rapmap 0.5.0+dfsg-3 source package in Ubuntu

Changelog

rapmap (0.5.0+dfsg-3) unstable; urgency=medium

  * Team upload

  [ Andreas Tille ]
  * Add binary package containing example data
  * debhelper 11
  * Standards-Version: 4.1.3

  [ Katerina Kalou ]
  * Provide autopkgtest
    Closes: #879616

 -- Katerina Kalou <email address hidden>  Fri, 12 Jan 2018 18:55:20 +0100

Upload details

Uploaded by:
Debian Med on 2018-01-18
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release on 2018-01-23 universe misc

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File Size SHA-256 Checksum
rapmap_0.5.0+dfsg-3.dsc 2.2 KiB 094d0a9531eb1c87da0fcb2518ac743e8e923772179434fbaea980da475359ed
rapmap_0.5.0+dfsg.orig.tar.xz 373.1 KiB 7b49db1d103da05c12761847eb9088f5321216cbb78e8af4c4165e1ae0e33585
rapmap_0.5.0+dfsg-3.debian.tar.xz 8.6 KiB 2b6f9370443ec6562cd6e6c67607947fe0595cd378359d3c8a2ca7abf06eff0d

Available diffs

No changes file available.

Binary packages built by this source

rapmap: rapid sensitive and accurate DNA read mapping via quasi-mapping

 RapMap is a testing ground for ideas in quasi-mapping / (lightweight /
 pseudo) transcriptome alignment. That means that, at this point, it is
 somewhat experimental. The develop branch will have the latest
 improvements and additions, but is not guaranteed to be stable between
 commits. Breaking changes to the master branch will be accompanied by a
 tag to the version before the breaking change. Currently, RapMap is a
 stand-alone quasi-mapper that can be used with other tools. It is also
 being used as part of Sailfish and Salmon. Eventually, the hope is to
 create and stabilize an API so that it can be used as a library from
 other tools.
 .
 Quasi-mapping / (lightweight / pseudo)-alignment is the term that is
 used here for the type of information required for certain tasks (e.g.
 transcript quantification) that is less "heavyweight" than what is
 provided by traditional alignment. For example, one may only need to
 know the transcripts / contigs to which a read aligns and, perhaps, the
 position within those transcripts rather than the optimal alignment and
 base-for-base CIGAR string that aligns the read and substring of the
 transcript. For details on RapMap (quasi-mapping in particular), please
 check out the associated paper. Note: RapMap implements both quasi-
 mapping and pseudo-alignment (originally introduced in Bray et al.
 2016), these two are not the same thing. They are distinct concepts, and
 RapMap simply happens to implement algorithms for computing both.

rapmap-dbgsym: debug symbols for rapmap
rapmap-example-data: example data for rapmap - rapid sensitive and accurate DNA read mapping

 RapMap is a testing ground for ideas in quasi-mapping / (lightweight /
 pseudo) transcriptome alignment. That means that, at this point, it is
 somewhat experimental. The develop branch will have the latest
 improvements and additions, but is not guaranteed to be stable between
 commits. Breaking changes to the master branch will be accompanied by a
 tag to the version before the breaking change. Currently, RapMap is a
 stand-alone quasi-mapper that can be used with other tools. It is also
 being used as part of Sailfish and Salmon. Eventually, the hope is to
 create and stabilize an API so that it can be used as a library from
 other tools.
 .
 This package contains example data to test this program.