RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux panlong 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.2. Syncing the system clock with the buildd NTP service... 6 Feb 00:52:07 ntpdate[21925]: adjust time server 10.211.37.1 offset -0.000033 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5558200', '/home/buildd/filecache-default/0b388822c095e3a603c4fe082c1cce86a980f1ed'] Unpacking chroot for build PACKAGEBUILD-5558200 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5558200'] Mounting chroot for build PACKAGEBUILD-5558200 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5558200', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5558200 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5558200', 'amd64'] Updating debian chroot for build PACKAGEBUILD-5558200 Ign http://ftpmaster.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://ftpmaster.internal trusty-proposed InRelease Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Get:2 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty Release [58.5 kB] Ign http://archive-team.internal trusty InRelease Get:6 http://ftpmaster.internal trusty-security Release [58.5 kB] Ign http://archive-team.internal trusty Release.gpg Get:7 http://ftpmaster.internal trusty-updates Release [58.5 kB] Get:8 http://archive-team.internal trusty Release [730 B] Get:9 http://ftpmaster.internal trusty-proposed Release [58.5 kB] Get:10 http://ftpmaster.internal trusty/main amd64 Packages [1311 kB] Get:11 http://archive-team.internal trusty/main amd64 Packages Ign http://archive-team.internal trusty/main Translation-en Get:12 http://ftpmaster.internal trusty/universe amd64 Packages [5875 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [752 kB] Get:14 http://ftpmaster.internal trusty/universe Translation-en [4053 kB] Get:15 http://ftpmaster.internal trusty-security/main amd64 Packages [14 B] Get:16 http://ftpmaster.internal trusty-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal trusty-updates/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-proposed/main amd64 Packages [36.7 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe amd64 Packages [139 kB] Get:25 http://ftpmaster.internal trusty-proposed/main Translation-en [20.0 kB] Get:26 http://ftpmaster.internal trusty-proposed/universe Translation-en [98.2 kB] Fetched 12.5 MB in 4s (2634 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps1 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: libdebconfclient0 libprocps3 The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils bsdutils cpp cpp-4.8 dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gnupg gpgv grep gzip ifupdown libapt-pkg4.12 libasan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libcurl3-gnutls libdbus-1-3 libdpkg-perl libdrm2 libffi6 libgcc-4.8-dev libgcc1 libgmp10 libgomp1 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libmount1 libncurses5 libncursesw5 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth2 libpng12-0 libquadmath0 libselinux1 libsqlite3-0 libss2 libstdc++-4.8-dev libstdc++6 libtinfo5 libtsan0 libudev1 libuuid1 linux-libc-dev login mount multiarch-support ncurses-base ncurses-bin passwd perl perl-base perl-modules pkgbinarymangler plymouth procps tar udev upstart util-linux 82 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 48.0 MB of archives. After this operation, 2148 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files amd64 7.2ubuntu1 [45.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main dpkg amd64 1.17.5ubuntu3 [1962 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libc-bin amd64 2.18-0ubuntu6 [1160 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libdbus-1-3 amd64 1.6.18-0ubuntu3 [132 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libselinux1 amd64 2.2.2-1 [58.0 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpam0g amd64 1.1.8-1ubuntu2 [55.8 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libpam-modules-bin amd64 1.1.8-1ubuntu2 [31.1 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libpam-modules amd64 1.1.8-1ubuntu2 [234 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main passwd amd64 1:4.1.5.1-1ubuntu8 [757 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libuuid1 amd64 2.20.1-5.1ubuntu14 [11.0 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libblkid1 amd64 2.20.1-5.1ubuntu14 [62.5 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main util-linux amd64 2.20.1-5.1ubuntu14 [457 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libprocps3 amd64 1:3.3.9-1ubuntu2 [31.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libncursesw5 amd64 5.9+20131221-1ubuntu1 [118 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libtinfo5 amd64 5.9+20131221-1ubuntu1 [75.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libncurses5 amd64 5.9+20131221-1ubuntu1 [93.3 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main procps amd64 1:3.3.9-1ubuntu2 [209 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main udev amd64 204-5ubuntu10 [734 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libudev1 amd64 204-5ubuntu10 [35.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main ifupdown amd64 0.7.47.2ubuntu1 [52.1 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main upstart amd64 1.11-0ubuntu3 [386 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libc6-dev amd64 2.18-0ubuntu6 [1914 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main libc-dev-bin amd64 2.18-0ubuntu6 [68.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev amd64 3.13.0-7.25 [761 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libitm1 amd64 4.8.2-14ubuntu4 [28.5 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 amd64 4.8.2-14ubuntu4 [23.1 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libasan0 amd64 4.8.2-14ubuntu4 [63.0 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base amd64 4.8.2-14ubuntu4 [15.1 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 amd64 1:4.8.2-14ubuntu4 [37.5 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 amd64 4.8.2-14ubuntu4 [8616 B] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libtsan0 amd64 4.8.2-14ubuntu4 [94.7 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libquadmath0 amd64 4.8.2-14ubuntu4 [126 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 amd64 4.8.2-14ubuntu4 [4591 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev amd64 4.8.2-14ubuntu4 [1037 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 amd64 4.8.2-14ubuntu4 [4981 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 amd64 4.8.2-14ubuntu4 [5013 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev amd64 4.8.2-14ubuntu4 [1688 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 amd64 4.8.2-14ubuntu4 [251 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libgmp10 amd64 2:5.1.3+dfsg-1ubuntu1 [218 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main binutils amd64 2.24-2ubuntu3 [2068 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libc6 amd64 2.18-0ubuntu6 [4754 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs amd64 1.42.9-2ubuntu1 [181 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs amd64 1.42.9-2ubuntu1 [661 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main findutils amd64 4.4.2-7 [272 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main grep amd64 2.16-1 [163 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main gzip amd64 1.6-3ubuntu1 [86.8 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main login amd64 1:4.1.5.1-1ubuntu8 [303 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main mount amd64 2.20.1-5.1ubuntu14 [115 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main ncurses-bin amd64 5.9+20131221-1ubuntu1 [137 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main perl amd64 5.18.2-2 [2630 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main perl-base amd64 5.18.2-2 [1147 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.2-2 [2696 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main tar amd64 1.27.1-1 [195 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main libapt-pkg4.12 amd64 0.9.14.1ubuntu2 [627 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main gpgv amd64 1.4.16-1ubuntu1 [160 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main gnupg amd64 1.4.16-1ubuntu1 [610 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main apt amd64 0.9.14.1ubuntu2 [954 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main libdebconfclient0 amd64 0.187ubuntu1 [6662 B] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main base-passwd amd64 3.5.32 [46.5 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main bsdutils amd64 1:2.20.1-5.1ubuntu14 [33.8 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main ncurses-base all 5.9+20131221-1ubuntu1 [16.5 kB] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 amd64 1.42.9-2ubuntu1 [62.4 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main libmount1 amd64 2.20.1-5.1ubuntu14 [60.3 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/main libss2 amd64 1.42.9-2ubuntu1 [66.8 kB] Get:65 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 amd64 3.0.13-12 [17.3 kB] Get:66 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 amd64 3.8.2-1ubuntu2 [342 kB] Get:67 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 amd64 2.4.52-1 [22.7 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty/main plymouth amd64 0.8.8-0ubuntu14 [97.9 kB] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main libpng12-0 amd64 1.2.50-1ubuntu1 [117 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main libplymouth2 amd64 0.8.8-0ubuntu14 [76.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libk5crypto3 amd64 1.12+dfsg-2ubuntu1 [79.7 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssapi-krb5-2 amd64 1.12+dfsg-2ubuntu1 [113 kB] Get:73 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5-3 amd64 1.12+dfsg-2ubuntu1 [262 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5support0 amd64 1.12+dfsg-2ubuntu1 [29.8 kB] Get:75 http://ftpmaster.internal/ubuntu/ trusty/main libcurl3-gnutls amd64 7.35.0-1ubuntu1 [164 kB] Get:76 http://ftpmaster.internal/ubuntu/ trusty/main libpam-runtime all 1.1.8-1ubuntu2 [37.7 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/main multiarch-support amd64 2.18-0ubuntu6 [4486 B] Get:78 http://ftpmaster.internal/ubuntu/ trusty/main apt-transport-https amd64 0.9.14.1ubuntu2 [24.7 kB] Get:79 http://ftpmaster.internal/ubuntu/ trusty/main cpp amd64 4:4.8.2-1ubuntu3 [27.7 kB] Get:80 http://ftpmaster.internal/ubuntu/ trusty/main dpkg-dev all 1.17.5ubuntu3 [726 kB] Get:81 http://ftpmaster.internal/ubuntu/ trusty/main libdpkg-perl all 1.17.5ubuntu3 [179 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty/main gcc amd64 4:4.8.2-1ubuntu3 [5008 B] Get:83 http://ftpmaster.internal/ubuntu/ trusty/main g++ amd64 4:4.8.2-1ubuntu3 [1506 B] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main pkgbinarymangler all 119 [28.2 kB] debconf: delaying package 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Preparing to replace base-files 6.12ubuntu5 (using .../base-files_7.2ubuntu1_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (7.2ubuntu1) ... Installing new version of config file /etc/debian_version ... (Reading database ... 11962 files and directories currently installed.) Preparing to replace dpkg 1.17.1ubuntu1 (using .../dpkg_1.17.5ubuntu3_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.17.5ubuntu3) ... (Reading database ... 11964 files and directories currently installed.) Preparing to unpack .../libc-bin_2.18-0ubuntu6_amd64.deb ... Unpacking libc-bin (2.18-0ubuntu6) over (2.18-0ubuntu2) ... Preparing to unpack .../libc6_2.18-0ubuntu6_amd64.deb ... Unpacking libc6:amd64 (2.18-0ubuntu6) over (2.18-0ubuntu2) ... Preparing to unpack .../libgcc1_1%3a4.8.2-14ubuntu4_amd64.deb ... Unpacking libgcc1:amd64 (1:4.8.2-14ubuntu4) over (1:4.8.2-10ubuntu2) ... Preparing to unpack .../gcc-4.8-base_4.8.2-14ubuntu4_amd64.deb ... 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Unpacking util-linux (2.20.1-5.1ubuntu14) over (2.20.1-5.1ubuntu11) ... Setting up util-linux (2.20.1-5.1ubuntu14) ... Installing new version of config file /etc/cron.weekly/fstrim ... Selecting previously unselected package libprocps3:amd64. (Reading database ... 11965 files and directories currently installed.) Preparing to unpack .../libprocps3_1%3a3.3.9-1ubuntu2_amd64.deb ... Unpacking libprocps3:amd64 (1:3.3.9-1ubuntu2) ... Preparing to unpack .../libncursesw5_5.9+20131221-1ubuntu1_amd64.deb ... Unpacking libncursesw5:amd64 (5.9+20131221-1ubuntu1) over (5.9+20130608-1ubuntu1) ... Preparing to unpack .../libtinfo5_5.9+20131221-1ubuntu1_amd64.deb ... Unpacking libtinfo5:amd64 (5.9+20131221-1ubuntu1) over (5.9+20130608-1ubuntu1) ... Setting up libtinfo5:amd64 (5.9+20131221-1ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu6) ... (Reading database ... 11971 files and directories currently installed.) Preparing to unpack .../libncurses5_5.9+20131221-1ubuntu1_amd64.deb ... Unpacking libncurses5:amd64 (5.9+20131221-1ubuntu1) over (5.9+20130608-1ubuntu1) ... Setting up libncurses5:amd64 (5.9+20131221-1ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu6) ... (Reading database ... 11971 files and directories currently installed.) Preparing to unpack .../procps_1%3a3.3.9-1ubuntu2_amd64.deb ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (1:3.3.9-1ubuntu2) over (1:3.3.8-2ubuntu3) ... Preparing to unpack .../udev_204-5ubuntu10_amd64.deb ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking udev (204-5ubuntu10) over (204-5ubuntu6) ... Preparing to unpack .../libudev1_204-5ubuntu10_amd64.deb ... Unpacking libudev1:amd64 (204-5ubuntu10) over (204-5ubuntu6) ... Preparing to unpack .../ifupdown_0.7.47.2ubuntu1_amd64.deb ... Unpacking ifupdown (0.7.47.2ubuntu1) over (0.7.47.1ubuntu1) ... Preparing to unpack .../upstart_1.11-0ubuntu3_amd64.deb ... 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Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.47.2ubuntu1) ... Setting up upstart (1.11-0ubuntu3) ... Installing new version of config file /etc/init/rc.conf ... Setting up libc-dev-bin (2.18-0ubuntu6) ... Setting up linux-libc-dev:amd64 (3.13.0-7.25) ... Setting up libc6-dev:amd64 (2.18-0ubuntu6) ... Setting up libitm1:amd64 (4.8.2-14ubuntu4) ... Setting up libgomp1:amd64 (4.8.2-14ubuntu4) ... Setting up libasan0:amd64 (4.8.2-14ubuntu4) ... Setting up libatomic1:amd64 (4.8.2-14ubuntu4) ... Setting up libtsan0:amd64 (4.8.2-14ubuntu4) ... Setting up libquadmath0:amd64 (4.8.2-14ubuntu4) ... Setting up libgmp10:amd64 (2:5.1.3+dfsg-1ubuntu1) ... Setting up cpp-4.8 (4.8.2-14ubuntu4) ... Setting up libgcc-4.8-dev:amd64 (4.8.2-14ubuntu4) ... Setting up libstdc++-4.8-dev:amd64 (4.8.2-14ubuntu4) ... Setting up binutils (2.24-2ubuntu3) ... Setting up gcc-4.8 (4.8.2-14ubuntu4) ... 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Setting up libdpkg-perl (1.17.5ubuntu3) ... Setting up dpkg-dev (1.17.5ubuntu3) ... Processing triggers for libc-bin (2.18-0ubuntu6) ... Processing triggers for initramfs-tools (0.103ubuntu3) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5558200', 'amd64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'ray_2.3.0-1.dsc'] Initiating build PACKAGEBUILD-5558200 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Automatic build of ray_2.3.0-1 on panlong by sbuild/amd64 1.170.5 Build started at 20140206-0054 ****************************************************************************** ray_2.3.0-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), zlib1g-dev, libbz2-dev, mpi-default-dev Checking for already installed source dependencies... debhelper: missing zlib1g-dev: missing libbz2-dev: missing mpi-default-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper zlib1g-dev libbz2-dev mpi-default-dev Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps1 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcr0 libcroco3 libexpat1 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libmpdec2 libnuma1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libtorque2 libunistring0 libxml2 libxml2-dev man-db mime-support openmpi-common po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff blcr-dkms libhwloc-contrib-plugins pkg-config less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libhwloc-plugins xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libbz2-dev libcr0 libcroco3 libexpat1 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libmpdec2 libnuma1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libtorque2 libunistring0 libxml2 libxml2-dev man-db mime-support mpi-default-dev openmpi-common po-debconf python3 python3-minimal python3.3 python3.3-minimal zlib1g-dev 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB of archives. After this operation, 59.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 amd64 2.1.0-4ubuntu1 [71.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 amd64 1:5.14-2ubuntu1 [183 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 amd64 1.0.1f-1ubuntu1 [823 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal amd64 3.3.4~rc1-1ubuntu1 [396 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libmpdec2 amd64 2.4.0-6 [79.4 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib amd64 3.3.4~rc1-1ubuntu1 [1985 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal amd64 3.3.4~rc1-1ubuntu1 [1383 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 amd64 0.18.3.1-1ubuntu2 [6654 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 amd64 2.39.4-0ubuntu1 [1043 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libnuma1 amd64 2.0.9~rc5-1ubuntu1 [20.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libpci3 amd64 1:3.2.1-1ubuntu1 [26.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 amd64 1.2.6-1 [23.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 amd64 2.9.1+dfsg1-3ubuntu3 [571 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main groff-base amd64 1.22.2-5 [1053 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main man-db amd64 2.6.6-1 [857 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 amd64 0.6.8-2ubuntu1 [82.4 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libltdl7 amd64 2.4.2-1.6ubuntu3 [35.1 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 amd64 0.9.3-5ubuntu3 [271 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/universe libhwloc5 amd64 1.8-1ubuntu1 [77.9 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 amd64 3.3.4~rc1-1ubuntu1 [132 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty-proposed/main python3-minimal amd64 3.3.3-1 [23.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpython3-stdlib amd64 3.3.3-1 [7092 B] Get:25 http://ftpmaster.internal/ubuntu/ trusty-proposed/main python3 amd64 3.3.3-1 [8660 B] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main dh-python all 1.20140128-1ubuntu1 [50.9 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main file amd64 1:5.14-2ubuntu1 [18.8 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base amd64 0.18.3.1-1ubuntu2 [48.8 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main gettext amd64 0.18.3.1-1ubuntu2 [831 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu38 [20.1 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu38 [7286 B] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131127ubuntu2 [603 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libbz2-dev amd64 1.0.6-5 [33.2 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/universe libcr0 amd64 0.8.5-2.1 [18.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main zlib1g-dev amd64 1:1.2.8.dfsg-1ubuntu1 [183 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libpci-dev amd64 1:3.2.1-1ubuntu1 [43.8 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/universe libtorque2 amd64 2.4.16+dfsg-1.3ubuntu1 [76.3 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libxml2-dev amd64 2.9.1+dfsg1-3ubuntu3 [629 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/universe openmpi-common all 1.6.5-8 [101 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/universe libhwloc-dev amd64 1.8-1ubuntu1 [130 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libibverbs1 amd64 1.1.7-1ubuntu1 [23.3 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libibverbs-dev amd64 1.1.7-1ubuntu1 [68.1 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/universe libopenmpi1.6 amd64 1.6.5-8 [1396 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/universe libopenmpi-dev amd64 1.6.5-8 [379 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/universe mpi-default-dev amd64 1.0.2ubuntu1 [3822 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.3 MB in 2s (5218 kB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 11977 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.14-2ubuntu1) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu1_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1f-1ubuntu1) ... Selecting previously unselected package libpython3.3-minimal:amd64. Preparing to unpack .../libpython3.3-minimal_3.3.4~rc1-1ubuntu1_amd64.deb ... Unpacking libpython3.3-minimal:amd64 (3.3.4~rc1-1ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.54ubuntu1_all.deb ... Unpacking mime-support (3.54ubuntu1) ... Selecting previously unselected package libmpdec2:amd64. 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Setting up libexpat1:amd64 (2.1.0-4ubuntu1) ... Setting up libmagic1:amd64 (1:5.14-2ubuntu1) ... Setting up libssl1.0.0:amd64 (1.0.1f-1ubuntu1) ... Setting up libpython3.3-minimal:amd64 (3.3.4~rc1-1ubuntu1) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libmpdec2:amd64 (2.4.0-6) ... Setting up libpython3.3-stdlib:amd64 (3.3.4~rc1-1ubuntu1) ... Setting up python3.3-minimal (3.3.4~rc1-1ubuntu1) ... Setting up libasprintf0c2:amd64 (0.18.3.1-1ubuntu2) ... Setting up libglib2.0-0:amd64 (2.39.4-0ubuntu1) ... No schema files found: doing nothing. Setting up libnuma1:amd64 (2.0.9~rc5-1ubuntu1) ... Setting up libpci3:amd64 (1:3.2.1-1ubuntu1) ... Setting up libpipeline1:amd64 (1.2.6-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:amd64 (0.6.8-2ubuntu1) ... Setting up libltdl7:amd64 (2.4.2-1.6ubuntu3) ... Setting up libunistring0:amd64 (0.9.3-5ubuntu3) ... Setting up libhwloc5:amd64 (1.8-1ubuntu1) ... Setting up python3.3 (3.3.4~rc1-1ubuntu1) ... Setting up python3-minimal (3.3.3-1) ... Setting up libpython3-stdlib:amd64 (3.3.3-1) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up libbz2-dev:amd64 (1.0.6-5) ... Setting up libcr0 (0.8.5-2.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up libpci-dev (1:3.2.1-1ubuntu1) ... Setting up libtorque2 (2.4.16+dfsg-1.3ubuntu1) ... Setting up libxml2-dev:amd64 (2.9.1+dfsg1-3ubuntu3) ... Setting up openmpi-common (1.6.5-8) ... Setting up libhwloc-dev:amd64 (1.8-1ubuntu1) ... Setting up libibverbs1 (1.1.7-1ubuntu1) ... Setting up libibverbs-dev (1.1.7-1ubuntu1) ... Setting up libopenmpi1.6 (1.6.5-8) ... Setting up libopenmpi-dev (1.6.5-8) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.2ubuntu1) ... Setting up python3 (3.3.3-1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20140128-1ubuntu1) ... Setting up apparmor-easyprof (2.8.0-0ubuntu38) ... Setting up dh-apparmor (2.8.0-0ubuntu38) ... Setting up debhelper (9.20131127ubuntu2) ... Processing triggers for libc-bin (2.18-0ubuntu6) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu6 make_3.81-8.2ubuntu3 dpkg-dev_1.17.5ubuntu3 gcc-4.8_4.8.2-14ubuntu4 g++-4.8_4.8.2-14ubuntu4 binutils_2.24-2ubuntu3 libstdc++-4.8-dev_4.8.2-14ubuntu4 libstdc++6_4.8.2-14ubuntu4 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Wed Feb 5 10:18:29 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ray_2.3.0-1.dsc dpkg-source: info: extracting ray in ray-2.3.0 dpkg-source: info: unpacking ray_2.3.0.orig.tar.bz2 dpkg-source: info: unpacking ray_2.3.0-1.debian.tar.xz dpkg-source: info: applying hardening.patch dpkg-buildpackage: source package ray dpkg-buildpackage: source version 2.3.0-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build ray-2.3.0 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/ray-2.3.0' dh_auto_clean -- CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make[2]: Entering directory `/build/buildd/ray-2.3.0' make[3]: Entering directory `/build/buildd/ray-2.3.0/RayPlatform' CLEAN RayPlatform make[3]: Leaving directory `/build/buildd/ray-2.3.0/RayPlatform' CLEAN Ray plugins make[2]: Leaving directory `/build/buildd/ray-2.3.0' rm -rf install-prefix rm -f README.Ray README.RayPlatform make[1]: Leaving directory `/build/buildd/ray-2.3.0' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/ray-2.3.0' dh_auto_build -- CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security" DEBLDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" HAVE_LIBBZ2=y HAVE_LIBZ=y make[2]: Entering directory `/build/buildd/ray-2.3.0' CXX code/application_core/ray_main.o CXX code/Amos/Amos.o CXX code/CoverageGatherer/CoverageGatherer.o CXX code/CoverageGatherer/CoverageDistribution.o CXX code/EdgePurger/EdgePurger.o CXX code/EdgePurger/EdgePurgerWorker.o CXX code/Example/Example.o CXX code/FusionData/FusionData.o CXX code/FusionTaskCreator/FusionWorker.o CXX code/FusionTaskCreator/FusionTaskCreator.o CXX code/GeneOntology/KeyEncoder.o CXX code/GeneOntology/GeneOntology.o CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o CXX code/GenomeNeighbourhood/Neighbour.o CXX code/GenomeNeighbourhood/NeighbourPair.o CXX code/JoinerTaskCreator/JoinerWorker.o CXX code/JoinerTaskCreator/JoinerTaskCreator.o CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o CXX code/KmerAcademyBuilder/BloomFilter.o CXX code/KmerAcademyBuilder/Kmer.o CXX code/Library/LibraryPeakFinder.o CXX code/Library/LibraryWorker.o CXX code/Library/Library.o CXX code/MachineHelper/MachineHelper.o CXX code/MessageProcessor/MessageProcessor.o CXX code/Mock/Parameters.o CXX code/Mock/common_functions.o CXX code/Mock/Mock.o CXX code/NetworkTest/NetworkTest.o CXX code/Partitioner/Partitioner.o CXX code/PathEvaluator/PathEvaluator.o CXX code/Scaffolder/Scaffolder.o CXX code/Scaffolder/ScaffoldingLink.o CXX code/Scaffolder/SummarizedLink.o CXX code/Scaffolder/ScaffoldingAlgorithm.o CXX code/Scaffolder/ScaffoldingVertex.o CXX code/Scaffolder/ScaffoldingEdge.o CXX code/Searcher/Searcher.o CXX code/Searcher/SearchDirectory.o code/Searcher/SearchDirectory.cpp: In member function 'void SearchDirectory::readLineFromFile(char*, int)': code/Searcher/SearchDirectory.cpp:320:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,length,m_currentFileStream); ^ CXX code/Searcher/ContigSearchEntry.o CXX code/Searcher/ContigHit.o CXX code/Searcher/ColorSet.o CXX code/Searcher/VirtualKmerColor.o CXX code/Searcher/QualityCaller.o CXX code/Searcher/DistributionWriter.o CXX code/Searcher/ColoredPeakFinder.o CXX code/SeedExtender/SeedExtender.o CXX code/SeedExtender/Direction.o CXX code/SeedExtender/VertexMessenger.o CXX code/SeedExtender/ReadFetcher.o CXX code/SeedExtender/BubbleTool.o CXX code/SeedExtender/Chooser.o CXX code/SeedExtender/OpenAssemblerChooser.o CXX code/SeedExtender/TipWatchdog.o CXX code/SeedExtender/NovaEngine.o CXX code/SeedExtender/ExtensionElement.o CXX code/SeedExtender/DepthFirstSearchData.o CXX code/SeedExtender/ExtensionData.o CXX code/SeedingData/GraphPath.o CXX code/SeedingData/SeedWorker.o CXX code/SeedingData/SeedingData.o CXX code/SeedingData/PathHandle.o CXX code/SequencesIndexer/SequencesIndexer.o CXX code/SequencesIndexer/IndexerWorker.o CXX code/SequencesIndexer/PairedRead.o CXX code/SequencesIndexer/ReadAnnotation.o CXX code/SequencesLoader/SequencesLoader.o CXX code/SequencesLoader/Read.o CXX code/SequencesLoader/ArrayOfReads.o CXX code/SequencesLoader/ColorSpaceDecoder.o CXX code/SequencesLoader/ColorSpaceLoader.o CXX code/SequencesLoader/FastaLoader.o CXX code/SequencesLoader/FastaLoaderForReads.o CXX code/SequencesLoader/FastqLoader.o CXX code/SequencesLoader/ExportLoader.o CXX code/SequencesLoader/LoaderInterface.o CXX code/SequencesLoader/LoaderFactory.o CXX code/SequencesLoader/SffLoader.o CXX code/SequencesLoader/Loader.o CXX code/SequencesLoader/BufferedReader.o CXX code/SequencesLoader/ReadHandle.o CXX code/SequencesLoader/BzReader.o CXX code/SequencesLoader/FastqBz2Loader.o CXX code/SequencesLoader/FastaBz2Loader.o CXX code/SequencesLoader/FastqGzLoader.o CXX code/SequencesLoader/FastaGzLoader.o CXX code/SequencesLoader/SequenceFileDetector.o CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o CXX code/SpuriousSeedAnnihilator/NanoMerger.o CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o CXX code/SpuriousSeedAnnihilator/GraphExplorer.o CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o CXX code/Surveyor/Mother.o CXX code/Surveyor/StoreKeeper.o CXX code/Surveyor/GenomeGraphReader.o CXX code/Surveyor/CoalescenceManager.o CXX code/Surveyor/ExperimentVertex.o CXX code/Surveyor/MatrixOwner.o CXX code/TaxonomyViewer/TaxonomyViewer.o CXX code/TaxonomyViewer/GenomeToTaxonLoader.o CXX code/TaxonomyViewer/TaxonomicTreeLoader.o CXX code/TaxonomyViewer/TaxonNameLoader.o CXX code/VerticesExtractor/VerticesExtractor.o CXX code/VerticesExtractor/GridTable.o CXX code/VerticesExtractor/GridTableIterator.o CXX code/VerticesExtractor/Vertex.o CXX code/application_core/Machine.o AR libRay.a make[3]: Entering directory `/build/buildd/ray-2.3.0/RayPlatform' CXX RayPlatform/memory/ReusableMemoryStore.o CXX RayPlatform/memory/MyAllocator.o CXX RayPlatform/memory/RingAllocator.o CXX RayPlatform/memory/allocator.o CXX RayPlatform/memory/DefragmentationGroup.o CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o CXX RayPlatform/memory/DefragmentationLane.o CXX RayPlatform/memory/DirtyBuffer.o CXX RayPlatform/routing/ConnectionGraph.o CXX RayPlatform/routing/GraphImplementation.o CXX RayPlatform/routing/GraphImplementationRandom.o CXX RayPlatform/routing/GraphImplementationComplete.o CXX RayPlatform/routing/GraphImplementationDeBruijn.o CXX RayPlatform/routing/GraphImplementationKautz.o CXX RayPlatform/routing/GraphImplementationExperimental.o CXX RayPlatform/routing/GraphImplementationGroup.o CXX RayPlatform/routing/Polytope.o CXX RayPlatform/routing/Torus.o CXX RayPlatform/communication/mpi_tags.o CXX RayPlatform/communication/VirtualCommunicator.o CXX RayPlatform/communication/BufferedData.o CXX RayPlatform/communication/Message.o CXX RayPlatform/communication/MessagesHandler.o CXX RayPlatform/communication/MessageQueue.o CXX RayPlatform/communication/MessageRouter.o CXX RayPlatform/scheduling/VirtualProcessor.o CXX RayPlatform/scheduling/TaskCreator.o CXX RayPlatform/scheduling/SwitchMan.o CXX RayPlatform/core/ComputeCore.o CXX RayPlatform/core/MiniRank.o CXX RayPlatform/core/slave_modes.o CXX RayPlatform/core/OperatingSystem.o CXX RayPlatform/core/master_modes.o CXX RayPlatform/core/statistics.o CXX RayPlatform/plugins/CorePlugin.o CXX RayPlatform/plugins/RegisteredPlugin.o CXX RayPlatform/structures/StaticVector.o CXX RayPlatform/profiling/Profiler.o CXX RayPlatform/profiling/Derivative.o CXX RayPlatform/profiling/TickLogger.o CXX RayPlatform/profiling/TimePrinter.o CXX RayPlatform/profiling/ProcessStatus.o CXX RayPlatform/handlers/MasterModeExecutor.o CXX RayPlatform/handlers/SlaveModeExecutor.o CXX RayPlatform/handlers/MessageTagExecutor.o CXX RayPlatform/cryptography/crypto.o CXX RayPlatform/store/KeyValueStore.o CXX RayPlatform/store/KeyValueStoreItem.o CXX RayPlatform/store/KeyValueStoreRequest.o CXX RayPlatform/actors/Actor.o CXX RayPlatform/actors/Playground.o CXX RayPlatform/files/FileReader.o AR libRayPlatform.a make[3]: Leaving directory `/build/buildd/ray-2.3.0/RayPlatform' LD Ray make[2]: Leaving directory `/build/buildd/ray-2.3.0' #Rename 2 docs to make more sence in package context cp README.md README.Ray cp RayPlatform/README.md README.RayPlatform cp RayPlatform/README.md RayPlatform/README make[1]: Leaving directory `/build/buildd/ray-2.3.0' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make[1]: Entering directory `/build/buildd/ray-2.3.0' Installing Ray to install-prefix make[1]: Leaving directory `/build/buildd/ray-2.3.0' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: ray dh_strip debug symbol extraction: packages to act on: ray dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `ray-dbgsym' in `../ray-dbgsym_2.3.0-1_amd64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 119 pkgstriptranslations: processing ray (in debian/ray); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ray/DEBIAN/control, package ray, directory debian/ray pkgstripfiles: PNG optimization for package ray took 0 s dpkg-deb: warning: 'debian/ray/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `ray' in `../ray_2.3.0-1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../ray_2.3.0-1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build ray-2.3.0 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20140206-0059 Publishing debug debs. chroot-autobuild/build/buildd/ray_2.3.0-1_amd64.deb: new debian package, version 2.0. size 586738 bytes: control archive= 1026 bytes. 979 bytes, 20 lines control 513 bytes, 8 lines md5sums Package: ray Version: 2.3.0-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1836 Depends: libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libopenmpi1.6, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), mpi-default-bin Section: science Priority: optional Homepage: http://denovoassembler.sourceforge.net/ Description: parallel de novo genome assemblies of next-gen sequencing data Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard. Included: - Ray de novo assembly of single genomes - Ray Méta de novo assembly of metagenomes - Ray Communities microbe abundance + taxonomic profiling - Ray Ontologies gene ontology profiling chroot-autobuild/build/buildd/ray_2.3.0-1_amd64.deb: drwxr-xr-x root/root 0 2014-02-06 00:59 ./ drwxr-xr-x root/root 0 2014-02-06 00:58 ./usr/ drwxr-xr-x root/root 0 2014-02-06 00:58 ./usr/share/ drwxr-xr-x root/root 0 2014-02-06 00:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-02-06 00:58 ./usr/share/doc/ray/ -rw-r--r-- root/root 5521 2013-10-31 18:28 ./usr/share/doc/ray/MANUAL_PAGE.txt.gz -rw-r--r-- root/root 331 2013-10-31 18:28 ./usr/share/doc/ray/AUTHORS -rw-r--r-- root/root 1518 2014-02-06 00:58 ./usr/share/doc/ray/README.RayPlatform.gz -rw-r--r-- root/root 2817 2014-02-06 00:58 ./usr/share/doc/ray/README.Ray.gz -rw-r--r-- root/root 438 2014-02-05 10:14 ./usr/share/doc/ray/changelog.Debian.gz -rw-r--r-- root/root 1860 2014-02-05 10:14 ./usr/share/doc/ray/copyright drwxr-xr-x root/root 0 2014-02-06 00:58 ./usr/share/man/ drwxr-xr-x root/root 0 2014-02-06 00:58 ./usr/share/man/man1/ -rw-r--r-- root/root 5335 2014-02-06 00:58 ./usr/share/man/man1/Ray.1.gz drwxr-xr-x root/root 0 2014-02-06 00:59 ./usr/bin/ -rwxr-xr-x root/root 1824424 2014-02-06 00:59 ./usr/bin/Ray ray_2.3.0-1_amd64.changes: Format: 1.8 Date: Mon, 3 Feb 2014 13:17:00 -0500 Source: ray Binary: ray ray-doc ray-extra Architecture: amd64 Version: 2.3.0-1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Sébastien Boisvert Description: ray - parallel de novo genome assemblies of next-gen sequencing data ray-doc - focumentation for ray parallel de novo genome assembler ray-extra - Scripts and XSL sheets for post-processing for ray de novo assemb Changes: ray (2.3.0-1) unstable; urgency=low . [ Sébastien Boisvert ] * New upstream version (previous patches removed since applied upstream) . [ Andreas Tille ] * debian/control: - Priority should be optional - enhanced description - normalised d/control via `cme fix dpkg-control` * debian/watch: More precise regexp to fit also historic versions * debian/upstream: publication information * debian/Ray.1: Enhanced formatting * debian/patches/hardening.patch: Propagate hardening options Checksums-Sha1: 11fb4de68294c30d7be8751a6ba677b4234ff520 586738 ray_2.3.0-1_amd64.deb Checksums-Sha256: ffbd2d32b63fe22420c259b2d3662d25c27b70bde202d3284bf12318340f5512 586738 ray_2.3.0-1_amd64.deb Files: a82480805e0699597c83024edbd0407a 586738 science optional ray_2.3.0-1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140206-0059 Build needed 00:04:09, 400536k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5558200'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5558200/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5558200'] Unmounting chroot for build PACKAGEBUILD-5558200... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5558200'] Removing build PACKAGEBUILD-5558200