https://launchpad.net/ubuntu/+source/ray/2.3.1-5ubuntu1/+build/14884031 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-020 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 15 May 12:39:05 ntpdate[1812]: adjust time server 10.211.37.1 offset 0.001166 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14884031 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-14884031 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14884031 Starting target for build PACKAGEBUILD-14884031 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14884031 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14884031 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14884031 Updating target for build PACKAGEBUILD-14884031 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1004 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8578 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4978 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [78.4 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [43.6 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [392 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [183 kB] Fetched 16.2 MB in 5s (3308 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 libmount1 libmpx2 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libquadmath0 libreadline7 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tzdata util-linux 74 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 49.7 MB of archives. After this operation, 1414 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-2ubuntu2 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 bsdutils i386 1:2.31.1-0.4ubuntu4 [62.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.1-2 [185 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.1-2 [428 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-2ubuntu2 [166 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libperl5.26 i386 5.26.2-3 [3182 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl i386 5.26.2-3 [201 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-base i386 5.26.2-3 [1495 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-2ubuntu2 [141 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libuuid1 i386 2.31.1-0.4ubuntu4 [20.6 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libblkid1 i386 2.31.1-0.4ubuntu4 [139 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libfdisk1 i386 2.31.1-0.4ubuntu4 [182 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmount1 i386 2.31.1-0.4ubuntu4 [149 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsmartcols1 i386 2.31.1-0.4ubuntu4 [91.8 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 fdisk i386 2.31.1-0.4ubuntu4 [116 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 util-linux i386 2.31.1-0.4ubuntu4 [929 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libquadmath0 i386 8.1.0-3ubuntu2 [208 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libitm1 i386 8.1.0-3ubuntu2 [30.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-8-base i386 8.1.0-3ubuntu2 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc1 i386 1:8.1.0-3ubuntu2 [48.1 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmpx2 i386 8.1.0-3ubuntu2 [12.9 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcc1-0 i386 8.1.0-3ubuntu2 [41.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libatomic1 i386 8.1.0-3ubuntu2 [9632 B] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgomp1 i386 8.1.0-3ubuntu2 [80.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++6 i386 8.1.0-3ubuntu2 [430 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~alpha0ubuntu1 [872 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 adduser all 3.117ubuntu1 [163 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~alpha0ubuntu1 [1195 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 mount i386 2.31.1-0.4ubuntu4 [112 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.1-2 [9684 B] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libgpg-error0 i386 1.31-1 [60.9 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.1-2 [11.6 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses5 i386 6.1+20180210-2ubuntu2 [101 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-2ubuntu2 [128 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-2ubuntu2 [79.7 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.10-2 [179 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps6 i386 2:3.3.12-3ubuntu2 [32.3 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-2ubuntu2 [108 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.12-3ubuntu2 [224 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-0 i386 0~20161029-2 [25.0 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsqlite3-0 i386 3.23.1-1 [536 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.30-17ubuntu1 [193 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.30-17ubuntu1 [3392 B] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.30-17ubuntu1 [2028 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.30-17ubuntu1 [544 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan4 i386 7.3.0-19ubuntu1 [361 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan0 i386 7.3.0-19ubuntu1 [141 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libcilkrts5 i386 7.3.0-19ubuntu1 [47.3 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 g++-7 i386 7.3.0-19ubuntu1 [7815 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7 i386 7.3.0-19ubuntu1 [7692 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-7-dev i386 7.3.0-19ubuntu1 [1505 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-7-dev i386 7.3.0-19ubuntu1 [2395 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-7 i386 7.3.0-19ubuntu1 [6965 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7-base i386 7.3.0-19ubuntu1 [18.8 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:7.3.0-3ubuntu3 [27.6 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:7.3.0-3ubuntu3 [5268 B] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:7.3.0-3ubuntu3 [1596 B] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.1-2 [2704 B] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.1-2 [2692 B] Get:75 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.15.0-21.22 [1007 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 pinentry-curses i386 1.1.0-1build1 [37.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.7 MB in 2s (26.3 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_i386.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_i386.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-2_i386.deb ... Unpacking libext2fs2:i386 (1.44.1-2) over (1.44.1-1) ... Setting up libext2fs2:i386 (1.44.1-2) ... (Reading database ... 12641 files and directories currently installed.) 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Setting up libcc1-0:i386 (8.1.0-3ubuntu2) ... Setting up e2fslibs:i386 (1.44.1-2) ... Setting up libncursesw5:i386 (6.1+20180210-2ubuntu2) ... Setting up libreadline7:i386 (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue May 15 12:39:38 UTC 2018. Universal Time is now: Tue May 15 12:39:38 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up linux-libc-dev:i386 (4.15.0-21.22) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up perl-modules-5.26 (5.26.2-3) ... Setting up libprocps6:i386 (2:3.3.12-3ubuntu2) ... Setting up libargon2-0:i386 (0~20161029-2) ... Setting up gcc-7-base:i386 (7.3.0-19ubuntu1) ... Setting up binutils-common:i386 (2.30-17ubuntu1) ... Setting up libmpx2:i386 (8.1.0-3ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:i386 (5.26.2-3) ... Setting up libsqlite3-0:i386 (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:i386 (1.44.1-2) ... Setting up libslang2:i386 (2.3.2-1ubuntu1) ... Setting up libncurses6:i386 (6.1+20180210-2ubuntu2) ... Setting up libusb-0.1-4:i386 (2:0.1.12-32) ... Setting up libitm1:i386 (8.1.0-3ubuntu2) ... Setting up libasan4:i386 (7.3.0-19ubuntu1) ... Setting up libbinutils:i386 (2.30-17ubuntu1) ... Setting up libcilkrts5:i386 (7.3.0-19ubuntu1) ... Setting up libubsan0:i386 (7.3.0-19ubuntu1) ... Setting up libgcc-7-dev:i386 (7.3.0-19ubuntu1) ... Setting up cpp-7 (7.3.0-19ubuntu1) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:i386 (7.3.0-19ubuntu1) ... Setting up perl (5.26.2-3) ... Setting up binutils-i686-linux-gnu (2.30-17ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-19ubuntu1) ... Setting up g++-7 (7.3.0-19ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14884031 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-14884031 --arch=i386 --dist=cosmic-proposed --nolog ray_2.3.1-5ubuntu1.dsc Initiating build PACKAGEBUILD-14884031 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-020.buildd +==============================================================================+ | ray 2.3.1-5ubuntu1 (i386) 15 May 2018 12:39 | +==============================================================================+ Package: ray Version: 2.3.1-5ubuntu1 Source Version: 2.3.1-5ubuntu1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/ray-8dtJdD/ray-2.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/ray-8dtJdD' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14884031/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ray_2.3.1-5ubuntu1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-RQx6uZ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-RQx6uZ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RQx6uZ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-RQx6uZ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RQx6uZ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-RQx6uZ/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (229 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-RQx6uZ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), zlib1g-dev, libbz2-dev, mpi-default-dev Filtered Build-Depends: debhelper (>= 10), zlib1g-dev, libbz2-dev, mpi-default-dev dpkg-deb: building package 'sbuild-build-depends-ray-dummy' in '/<>/resolver-TvJ3I2/apt_archive/sbuild-build-depends-ray-dummy.deb'. Ign:1 copy:/<>/resolver-TvJ3I2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-TvJ3I2/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-TvJ3I2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-TvJ3I2/apt_archive ./ Sources [231 B] Get:5 copy:/<>/resolver-TvJ3I2/apt_archive ./ Packages [547 B] Fetched 2897 B in 0s (251 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ray build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 librdmacm1 libsigsegv2 libssl1.0.0 libtimedate-perl libtool libxml2 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 librdmacm1 libsigsegv2 libssl1.0.0 libtimedate-perl libtool libxml2 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-ray-dummy zlib1g-dev 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 24.9 MB of archives. After this operation, 95.4 MB of additional disk space will be used. Get:1 copy:/<>/resolver-TvJ3I2/apt_archive ./ sbuild-build-depends-ray-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.8.7-1 [44.7 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.3-2 [1028 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.33-2 [193 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.33-2 [76.6 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.33-2 [22.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.56.1-2ubuntu1 [1232 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-6ubuntu1 [8192 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libxml2 i386 2.9.4+dfsg1-6.1ubuntu1 [697 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-6build1 [51.3 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 libedit2 i386 3.1-20170329-1build1 [80.7 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5support0 i386 1.16-2build1 [32.8 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libk5crypto3 i386 1.16-2build1 [90.0 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libkeyutils1 i386 1.5.9-9.2ubuntu3 [8940 B] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-3 i386 1.16-2build1 [303 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi-krb5-2 i386 1.16-2build1 [132 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 libnuma1 i386 2.0.11-2.2 [23.8 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.0.0 i386 1.0.2n-1ubuntu5 [913 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 openssh-client i386 1:7.7p1-2 [680 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-6build1 [412 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libtool all 2.4.6-2.1 [195 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 17 [15.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.041-1 [5188 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-6build1 [902 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.2.1ubuntu1 [906 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-3-200 i386 3.2.29-0ubuntu3 [55.9 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-route-3-200 i386 3.2.29-0ubuntu3 [154 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libibverbs1 i386 18.0-1 [51.8 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 ibverbs-providers i386 18.0-1 [186 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libbz2-dev i386 1.0.6-8.1 [28.6 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-2.1-6 i386 2.1.8-stable-4build1 [146 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-core-2.1-6 i386 2.1.8-stable-4build1 [93.6 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-pthreads-2.1-6 i386 2.1.8-stable-4build1 [5408 B] Get:48 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpsm-infinipath1 i386 3.3+20.604758e7-5 [182 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 librdmacm1 i386 18.0-1 [69.9 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfabric1 i386 1.5.3-1 [336 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libltdl7 i386 2.4.6-2.1 [40.5 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libltdl-dev i386 2.4.6-2.1 [164 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc5 i386 1.11.10-1 [115 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libpciaccess0 i386 0.14-1 [20.2 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 ocl-icd-libopencl1 i386 2.2.11-1ubuntu1 [31.3 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-plugins i386 1.11.10-1 [13.2 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpmix2 i386 2.1.1~rc1-4 [361 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libopenmpi3 i386 3.0.1.real-4 [2105 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 openmpi-common all 3.0.1.real-4 [143 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 openmpi-bin i386 3.0.1.real-4 [94.3 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libnuma-dev i386 2.0.11-2.2 [34.4 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-dev i386 1.11.10-1 [179 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libibverbs-dev i386 18.0-1 [114 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libopenmpi-dev i386 3.0.1.real-4 [821 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 mpi-default-dev i386 1.13 [3748 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.9 MB in 1s (34.3 MB/s) Selecting previously unselected package libbsd0:i386. 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No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:i386 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:i386 (0.8.7-1) ... Setting up libkrb5support0:i386 (1.16-2build1) ... Setting up libxml2:i386 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:i386 (1:5.33-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libevent-pthreads-2.1-6:i386 (2.1.8-stable-4build1) ... Setting up openmpi-common (3.0.1.real-4) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:i386 (2.4.6-2.1) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up libnuma-dev:i386 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:i386 (2.2.11-1ubuntu1) ... Setting up libkeyutils1:i386 (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:i386 (3.2.29-0ubuntu3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libk5crypto3:i386 (1.16-2build1) ... Setting up libltdl-dev:i386 (2.4.6-2.1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libnl-route-3-200:i386 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:i386 (1.11.10-1) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:i386 (1.16-2build1) ... Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:i386 (18.0-1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:i386 (1.11.10-1) ... Setting up libpmix2:i386 (2.1.1~rc1-4) ... Setting up librdmacm1:i386 (18.0-1) ... Setting up libgssapi-krb5-2:i386 (1.16-2build1) ... Setting up ibverbs-providers:i386 (18.0-1) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libibverbs-dev:i386 (18.0-1) ... Setting up libfabric1 (1.5.3-1) ... Setting up libopenmpi3:i386 (3.0.1.real-4) ... Setting up openmpi-bin (3.0.1.real-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:i386 (3.0.1.real-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-ray-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-124-generic amd64 (i686) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-19ubuntu1 gcc-7_7.3.0-19ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu2 linux-libc-dev_4.15.0-21.22 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-i686-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-19ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-19ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-19ubuntu1 gcc-7-base_7.3.0-19ubuntu1 gcc-8-base_8.1.0-3ubuntu2 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 ibverbs-providers_18.0-1 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-3ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-3ubuntu2 libcilkrts5_7.3.0-19ubuntu1 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20170329-1build1 libevent-2.1-6_2.1.8-stable-4build1 libevent-core-2.1-6_2.1.8-stable-4build1 libevent-pthreads-2.1-6_2.1.8-stable-4build1 libext2fs2_1.44.1-2 libfabric1_1.5.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-19ubuntu1 libgcc1_1:8.1.0-3ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-3ubuntu2 libgpg-error0_1.31-1 libgssapi-krb5-2_1.16-2build1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs-dev_18.0-1 libibverbs1_18.0-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-3ubuntu2 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu3 libkmod2_24-1ubuntu3 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-3ubuntu2 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libopenmpi-dev_3.0.1.real-4 libopenmpi3_3.0.1.real-4 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpmix2_2.1.1~rc1-4 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpsm-infinipath1_3.3+20.604758e7-5 libquadmath0_8.1.0-3ubuntu2 librdmacm1_18.0-1 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-19ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-21.22 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 mpi-default-dev_1.13 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.0.1.real-4 openmpi-common_3.0.1.real-4 openssh-client_1:7.7p1-2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ray-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue May 15 12:36:01 2018 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: issuer "ginggs@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ray_2.3.1-5ubuntu1.dsc dpkg-source: info: extracting ray in ray-2.3.1 dpkg-source: info: unpacking ray_2.3.1.orig.tar.bz2 dpkg-source: info: unpacking ray_2.3.1-5ubuntu1.debian.tar.xz dpkg-source: info: applying hardening.patch dpkg-source: info: applying mips.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying stable-link-order.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14884031 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14884031 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14884031 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ray dpkg-buildpackage: info: source version 2.3.1-5ubuntu1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build ray-2.3.1 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean -- CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make -j4 -Oline clean "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make -w -j -Oline --jobserver-fds=3,4 -C RayPlatform clean make[3]: Entering directory '/<>/RayPlatform' echo CLEAN RayPlatform CLEAN RayPlatform make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' rm -f libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o make[3]: Leaving directory '/<>/RayPlatform' make[2]: Entering directory '/<>' echo CLEAN Ray plugins CLEAN Ray plugins make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' rm -f Ray PREFIX code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o libRay.a libRayPlatform.a code/application_core/ray_main.o make[2]: Leaving directory '/<>' rm -rf install-prefix rm -f README.Ray README.RayPlatform make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" DEBLDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make -j4 -Oline "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "DEBLDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make[2]: Entering directory '/<>' echo " CXX code/application_core/ray_main.o" CXX code/application_core/ray_main.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Amos/Amos.o" CXX code/Amos/Amos.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/CoverageGatherer/CoverageDistribution.o" CXX code/CoverageGatherer/CoverageDistribution.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/CoverageGatherer/CoverageGatherer.o" CXX code/CoverageGatherer/CoverageGatherer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageDistribution.cpp -o code/CoverageGatherer/CoverageDistribution.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/EdgePurger/EdgePurger.o" CXX code/EdgePurger/EdgePurger.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Amos/Amos.cpp -o code/Amos/Amos.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/EdgePurger/EdgePurgerWorker.o" CXX code/EdgePurger/EdgePurgerWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageGatherer.cpp -o code/CoverageGatherer/CoverageGatherer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Example/Example.o" CXX code/Example/Example.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/FusionData/FusionData.o" CXX code/FusionData/FusionData.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/FusionTaskCreator/FusionWorker.o" CXX code/FusionTaskCreator/FusionWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurgerWorker.cpp -o code/EdgePurger/EdgePurgerWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/FusionTaskCreator/FusionTaskCreator.o" CXX code/FusionTaskCreator/FusionTaskCreator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/GeneOntology/KeyEncoder.o" CXX code/GeneOntology/KeyEncoder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/KeyEncoder.cpp -o code/GeneOntology/KeyEncoder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/GeneOntology/GeneOntology.o" CXX code/GeneOntology/GeneOntology.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionWorker.cpp -o code/FusionTaskCreator/FusionWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o" CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionTaskCreator.cpp -o code/FusionTaskCreator/FusionTaskCreator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/GenomeNeighbourhood/Neighbour.o" CXX code/GenomeNeighbourhood/Neighbour.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/GenomeNeighbourhood/NeighbourPair.o" CXX code/GenomeNeighbourhood/NeighbourPair.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/Neighbour.cpp -o code/GenomeNeighbourhood/Neighbour.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/JoinerTaskCreator/JoinerWorker.o" CXX code/JoinerTaskCreator/JoinerWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/NeighbourPair.cpp -o code/GenomeNeighbourhood/NeighbourPair.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/JoinerTaskCreator/JoinerTaskCreator.o" CXX code/JoinerTaskCreator/JoinerTaskCreator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerTaskCreator.cpp -o code/JoinerTaskCreator/JoinerTaskCreator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o" CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/GenomeNeighbourhood.cpp -o code/GenomeNeighbourhood/GenomeNeighbourhood.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/KmerAcademyBuilder/BloomFilter.o" CXX code/KmerAcademyBuilder/BloomFilter.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/BloomFilter.cpp -o code/KmerAcademyBuilder/BloomFilter.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/KmerAcademyBuilder/Kmer.o" CXX code/KmerAcademyBuilder/Kmer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerWorker.cpp -o code/JoinerTaskCreator/JoinerWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Library/LibraryPeakFinder.o" CXX code/Library/LibraryPeakFinder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/Kmer.cpp -o code/KmerAcademyBuilder/Kmer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Library/LibraryWorker.o" CXX code/Library/LibraryWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/KmerAcademyBuilder.cpp -o code/KmerAcademyBuilder/KmerAcademyBuilder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Library/Library.o" CXX code/Library/Library.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryPeakFinder.cpp -o code/Library/LibraryPeakFinder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/MachineHelper/MachineHelper.o" CXX code/MachineHelper/MachineHelper.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/GeneOntology.cpp -o code/GeneOntology/GeneOntology.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/MessageProcessor/MessageProcessor.o" CXX code/MessageProcessor/MessageProcessor.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryWorker.cpp -o code/Library/LibraryWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Mock/Parameters.o" CXX code/Mock/Parameters.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/Library.cpp -o code/Library/Library.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Mock/common_functions.o" CXX code/Mock/common_functions.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/common_functions.cpp -o code/Mock/common_functions.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Mock/Mock.o" CXX code/Mock/Mock.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MachineHelper/MachineHelper.cpp -o code/MachineHelper/MachineHelper.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/NetworkTest/NetworkTest.o" CXX code/NetworkTest/NetworkTest.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Mock.cpp -o code/Mock/Mock.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Partitioner/Partitioner.o" CXX code/Partitioner/Partitioner.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MessageProcessor/MessageProcessor.cpp -o code/MessageProcessor/MessageProcessor.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/PathEvaluator/PathEvaluator.o" CXX code/PathEvaluator/PathEvaluator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/NetworkTest/NetworkTest.cpp -o code/NetworkTest/NetworkTest.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Scaffolder/Scaffolder.o" CXX code/Scaffolder/Scaffolder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Partitioner/Partitioner.cpp -o code/Partitioner/Partitioner.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Scaffolder/ScaffoldingLink.o" CXX code/Scaffolder/ScaffoldingLink.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingLink.cpp -o code/Scaffolder/ScaffoldingLink.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Scaffolder/SummarizedLink.o" CXX code/Scaffolder/SummarizedLink.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/PathEvaluator/PathEvaluator.cpp -o code/PathEvaluator/PathEvaluator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Scaffolder/ScaffoldingAlgorithm.o" CXX code/Scaffolder/ScaffoldingAlgorithm.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/SummarizedLink.cpp -o code/Scaffolder/SummarizedLink.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Scaffolder/ScaffoldingVertex.o" CXX code/Scaffolder/ScaffoldingVertex.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingVertex.cpp -o code/Scaffolder/ScaffoldingVertex.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Scaffolder/ScaffoldingEdge.o" CXX code/Scaffolder/ScaffoldingEdge.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingEdge.cpp -o code/Scaffolder/ScaffoldingEdge.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/Searcher.o" CXX code/Searcher/Searcher.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Parameters.cpp -o code/Mock/Parameters.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/SearchDirectory.o" CXX code/Searcher/SearchDirectory.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/SearchDirectory.cpp -o code/Searcher/SearchDirectory.o code/Searcher/SearchDirectory.cpp: In member function ‘void SearchDirectory::readLineFromFile(char*, int)’: code/Searcher/SearchDirectory.cpp:320:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,length,m_currentFileStream); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/ContigSearchEntry.o" CXX code/Searcher/ContigSearchEntry.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingAlgorithm.cpp -o code/Scaffolder/ScaffoldingAlgorithm.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/ContigHit.o" CXX code/Searcher/ContigHit.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigSearchEntry.cpp -o code/Searcher/ContigSearchEntry.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/ColorSet.o" CXX code/Searcher/ColorSet.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigHit.cpp -o code/Searcher/ContigHit.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/VirtualKmerColor.o" CXX code/Searcher/VirtualKmerColor.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/VirtualKmerColor.cpp -o code/Searcher/VirtualKmerColor.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/QualityCaller.o" CXX code/Searcher/QualityCaller.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/Scaffolder.cpp -o code/Scaffolder/Scaffolder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/DistributionWriter.o" CXX code/Searcher/DistributionWriter.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/QualityCaller.cpp -o code/Searcher/QualityCaller.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Searcher/ColoredPeakFinder.o" CXX code/Searcher/ColoredPeakFinder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/SeedExtender.o" CXX code/SeedExtender/SeedExtender.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColoredPeakFinder.cpp -o code/Searcher/ColoredPeakFinder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/Direction.o" CXX code/SeedExtender/Direction.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/DistributionWriter.cpp -o code/Searcher/DistributionWriter.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/VertexMessenger.o" CXX code/SeedExtender/VertexMessenger.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Direction.cpp -o code/SeedExtender/Direction.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/ReadFetcher.o" CXX code/SeedExtender/ReadFetcher.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/VertexMessenger.cpp -o code/SeedExtender/VertexMessenger.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/BubbleTool.o" CXX code/SeedExtender/BubbleTool.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ReadFetcher.cpp -o code/SeedExtender/ReadFetcher.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/Chooser.o" CXX code/SeedExtender/Chooser.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/Searcher.cpp -o code/Searcher/Searcher.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/OpenAssemblerChooser.o" CXX code/SeedExtender/OpenAssemblerChooser.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Chooser.cpp -o code/SeedExtender/Chooser.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/TipWatchdog.o" CXX code/SeedExtender/TipWatchdog.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/BubbleTool.cpp -o code/SeedExtender/BubbleTool.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/NovaEngine.o" CXX code/SeedExtender/NovaEngine.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/OpenAssemblerChooser.cpp -o code/SeedExtender/OpenAssemblerChooser.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/ExtensionElement.o" CXX code/SeedExtender/ExtensionElement.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionElement.cpp -o code/SeedExtender/ExtensionElement.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/DepthFirstSearchData.o" CXX code/SeedExtender/DepthFirstSearchData.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/NovaEngine.cpp -o code/SeedExtender/NovaEngine.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedExtender/ExtensionData.o" CXX code/SeedExtender/ExtensionData.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/TipWatchdog.cpp -o code/SeedExtender/TipWatchdog.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedingData/GraphPath.o" CXX code/SeedingData/GraphPath.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionData.cpp -o code/SeedExtender/ExtensionData.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedingData/SeedWorker.o" CXX code/SeedingData/SeedWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/GraphPath.cpp -o code/SeedingData/GraphPath.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedingData/SeedingData.o" CXX code/SeedingData/SeedingData.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/SeedExtender.cpp -o code/SeedExtender/SeedExtender.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SeedingData/PathHandle.o" CXX code/SeedingData/PathHandle.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/DepthFirstSearchData.cpp -o code/SeedExtender/DepthFirstSearchData.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesIndexer/SequencesIndexer.o" CXX code/SequencesIndexer/SequencesIndexer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/PathHandle.cpp -o code/SeedingData/PathHandle.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesIndexer/IndexerWorker.o" CXX code/SequencesIndexer/IndexerWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedWorker.cpp -o code/SeedingData/SeedWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesIndexer/PairedRead.o" CXX code/SequencesIndexer/PairedRead.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/PairedRead.cpp -o code/SequencesIndexer/PairedRead.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesIndexer/ReadAnnotation.o" CXX code/SequencesIndexer/ReadAnnotation.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/ReadAnnotation.cpp -o code/SequencesIndexer/ReadAnnotation.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/SequencesLoader.o" CXX code/SequencesLoader/SequencesLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/SequencesIndexer.cpp -o code/SequencesIndexer/SequencesIndexer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/Read.o" CXX code/SequencesLoader/Read.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/IndexerWorker.cpp -o code/SequencesIndexer/IndexerWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/ArrayOfReads.o" CXX code/SequencesLoader/ArrayOfReads.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedingData.cpp -o code/SeedingData/SeedingData.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/ColorSpaceDecoder.o" CXX code/SequencesLoader/ColorSpaceDecoder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceDecoder.cpp -o code/SequencesLoader/ColorSpaceDecoder.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/ColorSpaceLoader.o" CXX code/SequencesLoader/ColorSpaceLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Read.cpp -o code/SequencesLoader/Read.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/FastaLoader.o" CXX code/SequencesLoader/FastaLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ArrayOfReads.cpp -o code/SequencesLoader/ArrayOfReads.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/FastaLoaderForReads.o" CXX code/SequencesLoader/FastaLoaderForReads.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceLoader.cpp -o code/SequencesLoader/ColorSpaceLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/FastqLoader.o" CXX code/SequencesLoader/FastqLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoaderForReads.cpp -o code/SequencesLoader/FastaLoaderForReads.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/ExportLoader.o" CXX code/SequencesLoader/ExportLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoader.cpp -o code/SequencesLoader/FastaLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/LoaderInterface.o" CXX code/SequencesLoader/LoaderInterface.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequencesLoader.cpp -o code/SequencesLoader/SequencesLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/LoaderFactory.o" CXX code/SequencesLoader/LoaderFactory.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqLoader.cpp -o code/SequencesLoader/FastqLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/SffLoader.o" CXX code/SequencesLoader/SffLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ExportLoader.cpp -o code/SequencesLoader/ExportLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/Loader.o" CXX code/SequencesLoader/Loader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderInterface.cpp -o code/SequencesLoader/LoaderInterface.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/BufferedReader.o" CXX code/SequencesLoader/BufferedReader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderFactory.cpp -o code/SequencesLoader/LoaderFactory.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/ReadHandle.o" CXX code/SequencesLoader/ReadHandle.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BufferedReader.cpp -o code/SequencesLoader/BufferedReader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/BzReader.o" CXX code/SequencesLoader/BzReader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ReadHandle.cpp -o code/SequencesLoader/ReadHandle.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/FastqBz2Loader.o" CXX code/SequencesLoader/FastqBz2Loader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Loader.cpp -o code/SequencesLoader/Loader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/FastaBz2Loader.o" CXX code/SequencesLoader/FastaBz2Loader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SffLoader.cpp -o code/SequencesLoader/SffLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/FastqGzLoader.o" CXX code/SequencesLoader/FastqGzLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BzReader.cpp -o code/SequencesLoader/BzReader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/FastaGzLoader.o" CXX code/SequencesLoader/FastaGzLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqBz2Loader.cpp -o code/SequencesLoader/FastqBz2Loader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SequencesLoader/SequenceFileDetector.o" CXX code/SequencesLoader/SequenceFileDetector.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaBz2Loader.cpp -o code/SequencesLoader/FastaBz2Loader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o" CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqGzLoader.cpp -o code/SequencesLoader/FastqGzLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o" CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaGzLoader.cpp -o code/SequencesLoader/FastaGzLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o" CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequenceFileDetector.cpp -o code/SequencesLoader/SequenceFileDetector.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o" CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnihilationWorker.cpp -o code/SpuriousSeedAnnihilator/AnnihilationWorker.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o" CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/NanoMerger.o" CXX code/SpuriousSeedAnnihilator/NanoMerger.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AttributeFetcher.cpp -o code/SpuriousSeedAnnihilator/AttributeFetcher.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o" CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnotationFetcher.cpp -o code/SpuriousSeedAnnihilator/AnnotationFetcher.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/GraphExplorer.o" CXX code/SpuriousSeedAnnihilator/GraphExplorer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.cpp -o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o" CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/NanoMerger.cpp -o code/SpuriousSeedAnnihilator/NanoMerger.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o" CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedMergingWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o" CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphSearchResult.cpp -o code/SpuriousSeedAnnihilator/GraphSearchResult.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Surveyor/Mother.o" CXX code/Surveyor/Mother.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphExplorer.cpp -o code/SpuriousSeedAnnihilator/GraphExplorer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Surveyor/StoreKeeper.o" CXX code/Surveyor/StoreKeeper.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp -o code/SpuriousSeedAnnihilator/SeedGossipSolver.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Surveyor/GenomeGraphReader.o" CXX code/Surveyor/GenomeGraphReader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/Mother.cpp -o code/Surveyor/Mother.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Surveyor/CoalescenceManager.o" CXX code/Surveyor/CoalescenceManager.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GossipAssetManager.cpp -o code/SpuriousSeedAnnihilator/GossipAssetManager.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Surveyor/ExperimentVertex.o" CXX code/Surveyor/ExperimentVertex.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/GenomeGraphReader.cpp -o code/Surveyor/GenomeGraphReader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/Surveyor/MatrixOwner.o" CXX code/Surveyor/MatrixOwner.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/CoalescenceManager.cpp -o code/Surveyor/CoalescenceManager.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/TaxonomyViewer/TaxonomyViewer.o" CXX code/TaxonomyViewer/TaxonomyViewer.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/StoreKeeper.cpp -o code/Surveyor/StoreKeeper.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/TaxonomyViewer/GenomeToTaxonLoader.o" CXX code/TaxonomyViewer/GenomeToTaxonLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/ExperimentVertex.cpp -o code/Surveyor/ExperimentVertex.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/TaxonomyViewer/TaxonomicTreeLoader.o" CXX code/TaxonomyViewer/TaxonomicTreeLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/GenomeToTaxonLoader.cpp -o code/TaxonomyViewer/GenomeToTaxonLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/TaxonomyViewer/TaxonNameLoader.o" CXX code/TaxonomyViewer/TaxonNameLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomicTreeLoader.cpp -o code/TaxonomyViewer/TaxonomicTreeLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/VerticesExtractor/VerticesExtractor.o" CXX code/VerticesExtractor/VerticesExtractor.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonNameLoader.cpp -o code/TaxonomyViewer/TaxonNameLoader.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/VerticesExtractor/GridTable.o" CXX code/VerticesExtractor/GridTable.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/MatrixOwner.cpp -o code/Surveyor/MatrixOwner.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/VerticesExtractor/GridTableIterator.o" CXX code/VerticesExtractor/GridTableIterator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTableIterator.cpp -o code/VerticesExtractor/GridTableIterator.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/VerticesExtractor/Vertex.o" CXX code/VerticesExtractor/Vertex.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTable.cpp -o code/VerticesExtractor/GridTable.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " CXX code/application_core/Machine.o" CXX code/application_core/Machine.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/VerticesExtractor.cpp -o code/VerticesExtractor/VerticesExtractor.o make[2]: Leaving directory '/<>' make -w -j -Oline --jobserver-fds=3,4 -C RayPlatform make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/memory/ReusableMemoryStore.o" CXX RayPlatform/memory/ReusableMemoryStore.o make[3]: Leaving directory '/<>/RayPlatform' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/Vertex.cpp -o code/VerticesExtractor/Vertex.o make[2]: Leaving directory '/<>' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/memory/MyAllocator.o" CXX RayPlatform/memory/MyAllocator.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/ReusableMemoryStore.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/memory/RingAllocator.o" CXX RayPlatform/memory/RingAllocator.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/MyAllocator.o RayPlatform/memory/MyAllocator.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/memory/allocator.o" CXX RayPlatform/memory/allocator.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/allocator.o RayPlatform/memory/allocator.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/memory/DefragmentationGroup.o" CXX RayPlatform/memory/DefragmentationGroup.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/DefragmentationGroup.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o" CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/memory/DefragmentationLane.o" CXX RayPlatform/memory/DefragmentationLane.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/memory/DirtyBuffer.o" CXX RayPlatform/memory/DirtyBuffer.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DefragmentationLane.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/ConnectionGraph.o" CXX RayPlatform/routing/ConnectionGraph.o make[3]: Leaving directory '/<>/RayPlatform' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomyViewer.cpp -o code/TaxonomyViewer/TaxonomyViewer.o make[2]: Leaving directory '/<>' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/GraphImplementation.o" CXX RayPlatform/routing/GraphImplementation.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/GraphImplementationRandom.o" CXX RayPlatform/routing/GraphImplementationRandom.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/ConnectionGraph.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/GraphImplementationComplete.o" CXX RayPlatform/routing/GraphImplementationComplete.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/GraphImplementationDeBruijn.o" CXX RayPlatform/routing/GraphImplementationDeBruijn.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationRandom.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/GraphImplementationKautz.o" CXX RayPlatform/routing/GraphImplementationKautz.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationComplete.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/GraphImplementationExperimental.o" CXX RayPlatform/routing/GraphImplementationExperimental.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationDeBruijn.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/GraphImplementationGroup.o" CXX RayPlatform/routing/GraphImplementationGroup.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationKautz.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/Polytope.o" CXX RayPlatform/routing/Polytope.o make[3]: Leaving directory '/<>/RayPlatform' make[2]: Entering directory '/<>' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/Machine.cpp -o code/application_core/Machine.o make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " AR libRay.a" AR libRay.a make[2]: Leaving directory '/<>' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/routing/Torus.o" CXX RayPlatform/routing/Torus.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/communication/mpi_tags.o" CXX RayPlatform/communication/mpi_tags.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/mpi_tags.o RayPlatform/communication/mpi_tags.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/communication/VirtualCommunicator.o" CXX RayPlatform/communication/VirtualCommunicator.o make[3]: Leaving directory '/<>/RayPlatform' make[2]: Entering directory '/<>' ar rcs libRay.a code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o make[2]: Leaving directory '/<>' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/communication/BufferedData.o" CXX RayPlatform/communication/BufferedData.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/communication/Message.o" CXX RayPlatform/communication/Message.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Torus.o RayPlatform/routing/Torus.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/communication/MessagesHandler.o" CXX RayPlatform/communication/MessagesHandler.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/Message.o RayPlatform/communication/Message.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/communication/MessageQueue.o" CXX RayPlatform/communication/MessageQueue.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/BufferedData.o RayPlatform/communication/BufferedData.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/communication/MessageRouter.o" CXX RayPlatform/communication/MessageRouter.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageQueue.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/scheduling/VirtualProcessor.o" CXX RayPlatform/scheduling/VirtualProcessor.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/VirtualCommunicator.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/scheduling/TaskCreator.o" CXX RayPlatform/scheduling/TaskCreator.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessagesHandler.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/scheduling/SwitchMan.o" CXX RayPlatform/scheduling/SwitchMan.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageRouter.o RayPlatform/communication/MessageRouter.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/core/ComputeCore.o" CXX RayPlatform/core/ComputeCore.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/VirtualProcessor.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/core/MiniRank.o" CXX RayPlatform/core/MiniRank.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/TaskCreator.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/core/slave_modes.o" CXX RayPlatform/core/slave_modes.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/slave_modes.o RayPlatform/core/slave_modes.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/core/OperatingSystem.o" CXX RayPlatform/core/OperatingSystem.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/SwitchMan.o RayPlatform/scheduling/SwitchMan.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/core/master_modes.o" CXX RayPlatform/core/master_modes.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/master_modes.o RayPlatform/core/master_modes.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/core/statistics.o" CXX RayPlatform/core/statistics.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/OperatingSystem.o RayPlatform/core/OperatingSystem.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/plugins/CorePlugin.o" CXX RayPlatform/plugins/CorePlugin.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/CorePlugin.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/plugins/RegisteredPlugin.o" CXX RayPlatform/plugins/RegisteredPlugin.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/MiniRank.o RayPlatform/core/MiniRank.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/structures/StaticVector.o" CXX RayPlatform/structures/StaticVector.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/structures/StaticVector.o RayPlatform/structures/StaticVector.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/profiling/Profiler.o" CXX RayPlatform/profiling/Profiler.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/statistics.o RayPlatform/core/statistics.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/profiling/Derivative.o" CXX RayPlatform/profiling/Derivative.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/plugins/RegisteredPlugin.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/profiling/TickLogger.o" CXX RayPlatform/profiling/TickLogger.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Profiler.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/profiling/TimePrinter.o" CXX RayPlatform/profiling/TimePrinter.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Derivative.o RayPlatform/profiling/Derivative.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/profiling/ProcessStatus.o" CXX RayPlatform/profiling/ProcessStatus.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TickLogger.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/handlers/MasterModeExecutor.o" CXX RayPlatform/handlers/MasterModeExecutor.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/MasterModeExecutor.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/handlers/SlaveModeExecutor.o" CXX RayPlatform/handlers/SlaveModeExecutor.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/handlers/MessageTagExecutor.o" CXX RayPlatform/handlers/MessageTagExecutor.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/handlers/MessageTagExecutor.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/cryptography/crypto.o" CXX RayPlatform/cryptography/crypto.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/cryptography/crypto.o RayPlatform/cryptography/crypto.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/store/KeyValueStore.o" CXX RayPlatform/store/KeyValueStore.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/TimePrinter.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/store/KeyValueStoreItem.o" CXX RayPlatform/store/KeyValueStoreItem.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/ProcessStatus.o RayPlatform/profiling/ProcessStatus.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/store/KeyValueStoreRequest.o" CXX RayPlatform/store/KeyValueStoreRequest.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreItem.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/actors/Actor.o" CXX RayPlatform/actors/Actor.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/store/KeyValueStoreRequest.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/actors/Playground.o" CXX RayPlatform/actors/Playground.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/ComputeCore.o RayPlatform/core/ComputeCore.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " CXX RayPlatform/files/FileReader.o" CXX RayPlatform/files/FileReader.o make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/files/FileReader.o RayPlatform/files/FileReader.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStore.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Actor.o RayPlatform/actors/Actor.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Playground.o RayPlatform/actors/Playground.cpp make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' echo " AR libRayPlatform.a" AR libRayPlatform.a make[3]: Leaving directory '/<>/RayPlatform' make[3]: Entering directory '/<>/RayPlatform' ar rcs libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o make[3]: Leaving directory '/<>/RayPlatform' make[2]: Entering directory '/<>' cp RayPlatform/libRayPlatform.a libRayPlatform.a make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo " LD Ray" LD Ray make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' mpicxx code/application_core/ray_main.o libRay.a libRayPlatform.a -oRay -lz -lbz2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread make[2]: Leaving directory '/<>' make[2]: Entering directory '/<>' echo install-prefix > PREFIX make[2]: Leaving directory '/<>' #Rename 2 docs to make more sence in package context cp README.md README.Ray cp RayPlatform/README.md README.RayPlatform cp RayPlatform/README.md RayPlatform/README make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j4 -Oline install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' mkdir -p install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' echo "" make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' echo "Installing Ray to install-prefix" Installing Ray to install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' echo "" make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp LICENSE.txt install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp gpl-3.0.txt install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp RayPlatform/lgpl-3.0.txt install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp Ray install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp -r Documentation install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp README.md install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp MANUAL_PAGE.txt install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp AUTHORS install-prefix make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp -r scripts REFIX make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' mkdir install-prefix/RayPlatform make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp RayPlatform/AUTHORS install-prefix/RayPlatform make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp RayPlatform/README.md install-prefix/RayPlatform make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' cp -r RayPlatform/Documentation install-prefix/RayPlatform make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing ray (in debian/ray); do_strip: , oemstrip: pkgstriptranslations: processing ray-dbgsym (in debian/.debhelper/ray/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/ray/DEBIAN/control, package ray, directory debian/ray pkgstripfiles: processing control file: debian/.debhelper/ray/dbgsym-root/DEBIAN/control, package ray-dbgsym, directory debian/.debhelper/ray/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package ray-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ray-dbgsym' in 'debian/.debhelper/scratch-space/build-ray/ray-dbgsym_2.3.1-5ubuntu1_i386.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package ray ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ray' in '../ray_2.3.1-5ubuntu1_i386.deb'. Renaming ray-dbgsym_2.3.1-5ubuntu1_i386.deb to ray-dbgsym_2.3.1-5ubuntu1_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ray_2.3.1-5ubuntu1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build ray-2.3.1 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180515-1241 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ray_2.3.1-5ubuntu1_i386.changes: -------------------------------- Format: 1.8 Date: Tue, 15 May 2018 12:24:44 +0000 Source: ray Binary: ray ray-doc ray-extra Architecture: i386 Version: 2.3.1-5ubuntu1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: ray - de novo genome assemblies of next-gen sequencing data ray-doc - documentation for ray parallel de novo genome assembler ray-extra - Scripts and XSL sheets for post-processing for ray Changes: ray (2.3.1-5ubuntu1) cosmic; urgency=medium . [ Nadiya Sitdykova ] * Allow mpi run without ssh dependency . [ Graham Inggs ] * Allow node oversubscription in autopkgtest Checksums-Sha1: a0502c00bc98236d088df9be75d423b80d8696bd 14064108 ray-dbgsym_2.3.1-5ubuntu1_i386.ddeb fa7ec2fd5eac3cc39a50c2d3d4a7a6fd12bd5409 6354 ray_2.3.1-5ubuntu1_i386.buildinfo 3b449725f4187fe00468f80442b7e096592faf25 923676 ray_2.3.1-5ubuntu1_i386.deb Checksums-Sha256: ec418e01cba78e9a797c9c238a94727d768d0df8216ae03174017a1ee69532f5 14064108 ray-dbgsym_2.3.1-5ubuntu1_i386.ddeb 4ed3e34c6b43fb392d7698ee6f646a74210382a729779483c770566503cc2176 6354 ray_2.3.1-5ubuntu1_i386.buildinfo 7fa80c001436433a0fe7f664bd0864077e6a4cef5db150df71ed3cb4a766d2d4 923676 ray_2.3.1-5ubuntu1_i386.deb Files: 6a01db926c5afdc6bef6ed0629faf8b3 14064108 debug optional ray-dbgsym_2.3.1-5ubuntu1_i386.ddeb f30e8f8351a9b2832e4c66ca316e4db6 6354 science optional ray_2.3.1-5ubuntu1_i386.buildinfo db983cc62f37d82b61dc805e64eab1d9 923676 science optional ray_2.3.1-5ubuntu1_i386.deb Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ray_2.3.1-5ubuntu1_i386.deb --------------------------- new debian package, version 2.0. size 923676 bytes: control archive=1276 bytes. 969 bytes, 20 lines control 1078 bytes, 15 lines md5sums Package: ray Version: 2.3.1-5ubuntu1 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 2557 Depends: libbz2-1.0, libc6 (>= 2.4), libgcc1 (>= 1:4.2), libopenmpi3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4), mpi-default-bin Section: science Priority: optional Homepage: http://denovoassembler.sourceforge.net/ Description: de novo genome assemblies of next-gen sequencing data Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard. Included: - Ray de novo assembly of single genomes - Ray Méta de novo assembly of metagenomes - Ray Communities microbe abundance + taxonomic profiling - Ray Ontologies gene ontology profiling Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2018-05-15 12:24 ./ drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/ drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/bin/ -rwxr-xr-x root/root 2111984 2018-05-15 12:24 ./usr/bin/Ray drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/share/ drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/share/doc/ray/ -rw-r--r-- root/root 331 2014-02-12 19:32 ./usr/share/doc/ray/AUTHORS -rw-r--r-- root/root 5749 2014-02-12 19:32 ./usr/share/doc/ray/MANUAL_PAGE.txt.gz -rw-r--r-- root/root 2870 2018-05-15 12:24 ./usr/share/doc/ray/README.Ray.gz -rw-r--r-- root/root 1584 2018-05-15 12:24 ./usr/share/doc/ray/README.RayPlatform.gz -rw-r--r-- root/root 261 2017-07-28 03:21 ./usr/share/doc/ray/README.test -rw-r--r-- root/root 1243 2018-05-15 12:24 ./usr/share/doc/ray/changelog.Debian.gz -rw-r--r-- root/root 1954 2017-07-28 03:21 ./usr/share/doc/ray/copyright -rw-r--r-- root/root 586 2018-05-15 12:22 ./usr/share/doc/ray/run-unit-test drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/share/doc/ray/test_data/ -rw-r--r-- root/root 58 2017-07-28 03:21 ./usr/share/doc/ray/test_data/Ray.conf drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/share/doc/ray/test_data/SampleDirectory/ -rw-r--r-- root/root 114568 2017-07-28 03:21 ./usr/share/doc/ray/test_data/SampleDirectory/s_6.first1000_1.fastq.gz -rw-r--r-- root/root 119266 2017-07-28 03:21 ./usr/share/doc/ray/test_data/SampleDirectory/s_6.first1000_2.fastq.gz -rw-r--r-- root/root 114568 2017-07-28 03:21 ./usr/share/doc/ray/test_data/ecoli_1K_1.fq.gz -rw-r--r-- root/root 119266 2017-07-28 03:21 ./usr/share/doc/ray/test_data/ecoli_1K_2.fq.gz drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-15 12:24 ./usr/share/man/man1/ -rw-r--r-- root/root 5335 2018-05-15 12:24 ./usr/share/man/man1/Ray.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 319668 Build-Time: 113 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 14 Job: ray_2.3.1-5ubuntu1.dsc Machine Architecture: amd64 Package: ray Package-Time: 127 Source-Version: 2.3.1-5ubuntu1 Space: 319668 Status: successful Version: 2.3.1-5ubuntu1 -------------------------------------------------------------------------------- Finished at 20180515-1241 Build needed 00:02:07, 319668k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14884031 Scanning for processes to kill in build PACKAGEBUILD-14884031 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14884031 Stopping target for build PACKAGEBUILD-14884031 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14884031 Removing build PACKAGEBUILD-14884031