https://launchpad.net/ubuntu/+source/ray/2.3.1-7/+build/18192650 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-015 4.4.0-169-generic #198-Ubuntu SMP Tue Nov 12 10:34:11 UTC 2019 s390x Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 2 Dec 17:12:41 ntpdate[1858]: adjust time server 10.211.37.1 offset 0.000409 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18192650 --image-type chroot /home/buildd/filecache-default/1ac0229cc48d8f596a1790116aa52d00551197b1 Creating target for build PACKAGEBUILD-18192650 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18192650 Starting target for build PACKAGEBUILD-18192650 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18192650 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18192650 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18192650 Updating target for build PACKAGEBUILD-18192650 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x Packages [921 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [504 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe s390x Packages [8388 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5187 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main s390x Packages [68.5 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [43.8 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x Packages [396 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [218 kB] Fetched 16.2 MB in 4s (4521 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: base-files bash binutils binutils-common binutils-s390x-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv hostname libacl1 libapparmor1 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 82 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 55.3 MB of archives. After this operation, 49.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libc6-dev s390x 2.30-0ubuntu3 [2060 kB] Get:2 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libc-dev-bin s390x 2.30-0ubuntu3 [63.9 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main s390x linux-libc-dev s390x 5.3.0-24.26 [1094 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libisl22 s390x 0.22-2 [546 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libcc1-0 s390x 9.2.1-21ubuntu1 [46.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x binutils-s390x-linux-gnu s390x 2.33.1-1ubuntu1 [1460 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x libbinutils s390x 2.33.1-1ubuntu1 [299 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x binutils-common s390x 2.33.1-1ubuntu1 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x binutils s390x 2.33.1-1ubuntu1 [3336 B] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gcc-9-base s390x 9.2.1-21ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgcc1 s390x 1:9.2.1-21ubuntu1 [25.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgomp1 s390x 9.2.1-21ubuntu1 [83.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libitm1 s390x 9.2.1-21ubuntu1 [27.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libatomic1 s390x 9.2.1-21ubuntu1 [8264 B] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libasan5 s390x 9.2.1-21ubuntu1 [361 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libubsan1 s390x 9.2.1-21ubuntu1 [125 kB] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/main s390x g++-9 s390x 9.2.1-21ubuntu1 [8609 kB] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libstdc++-9-dev s390x 9.2.1-21ubuntu1 [1673 kB] Get:19 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgcc-9-dev s390x 9.2.1-21ubuntu1 [704 kB] Get:20 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gcc-9 s390x 9.2.1-21ubuntu1 [8095 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main s390x cpp-9 s390x 9.2.1-21ubuntu1 [7454 kB] Get:22 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libstdc++6 s390x 9.2.1-21ubuntu1 [504 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libc6 s390x 2.30-0ubuntu3 [2289 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x base-files s390x 11ubuntu1 [60.3 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x debianutils s390x 4.9 [85.8 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x bash s390x 5.0-5ubuntu1 [622 kB] Get:27 http://ftpmaster.internal/ubuntu focal-proposed/main s390x bsdutils s390x 1:2.34-0.1ubuntu3 [61.8 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x hostname s390x 3.23 [11.1 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-bin s390x 6.1+20191019-1ubuntu1 [169 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x libperl5.30 s390x 5.30.0-9 [3782 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x perl s390x 5.30.0-9 [224 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x perl-base s390x 5.30.0-9 [1423 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x bzip2 s390x 1.0.8-2 [33.3 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-1.0 s390x 1.0.8-2 [32.6 kB] Get:36 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libblkid1 s390x 2.34-0.1ubuntu3 [128 kB] Get:37 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libuuid1 s390x 2.34-0.1ubuntu3 [20.6 kB] Get:38 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libfdisk1 s390x 2.34-0.1ubuntu3 [160 kB] Get:39 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libpcre2-8-0 s390x 10.34-1 [109 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x libselinux1 s390x 2.9-3 [66.7 kB] Get:41 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libmount1 s390x 2.34-0.1ubuntu3 [137 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x libncurses6 s390x 6.1+20191019-1ubuntu1 [94.7 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libtinfo6 s390x 6.1+20191019-1ubuntu1 [83.6 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x libncursesw6 s390x 6.1+20191019-1ubuntu1 [122 kB] Get:45 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libsmartcols1 s390x 2.34-0.1ubuntu3 [93.8 kB] Get:46 http://ftpmaster.internal/ubuntu focal-proposed/main s390x fdisk s390x 2.34-0.1ubuntu3 [114 kB] Get:47 http://ftpmaster.internal/ubuntu focal-proposed/main s390x util-linux s390x 2.34-0.1ubuntu3 [982 kB] Get:48 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libc-bin s390x 2.30-0ubuntu3 [547 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x lsb-base all 11.1.0ubuntu1 [12.2 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x sysvinit-utils s390x 2.96-1ubuntu1 [20.6 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x systemd-sysv s390x 243-3ubuntu1 [9364 B] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x libacl1 s390x 2.2.53-5 [18.3 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x libapparmor1 s390x 2.13.3-5ubuntu5 [33.2 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x libaudit-common all 1:2.8.5-2ubuntu3 [4108 B] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x libcap-ng0 s390x 0.7.9-2.1 [10.8 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libaudit1 s390x 1:2.8.5-2ubuntu3 [37.4 kB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libcap2 s390x 1:2.27-1 [14.2 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libudev1 s390x 243-3ubuntu1 [74.1 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libdevmapper1.02.1 s390x 2:1.02.155-2ubuntu7 [122 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libjson-c4 s390x 0.13.1+dfsg-6 [27.9 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libcryptsetup12 s390x 2:2.2.2-1ubuntu1 [160 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [124 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x libp11-kit0 s390x 0.23.18.1-2 [172 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x libtasn1-6 s390x 4.15.0-2 [36.9 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x libgnutls30 s390x 3.6.10-5 [676 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libkmod2 s390x 26-3ubuntu1 [40.0 kB] Get:69 http://ftpmaster.internal/ubuntu focal-proposed/main s390x liblz4-1 s390x 1.9.2-2 [53.8 kB] Get:70 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libseccomp2 s390x 2.4.2-2ubuntu1 [38.6 kB] Get:71 http://ftpmaster.internal/ubuntu focal-proposed/main s390x mount s390x 2.34-0.1ubuntu3 [110 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x systemd s390x 243-3ubuntu1 [3284 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libsystemd0 s390x 243-3ubuntu1 [242 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x libattr1 s390x 1:2.4.48-5 [12.4 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x libdebconfclient0 s390x 0.250ubuntu1 [6208 B] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x libgcrypt20 s390x 1.8.5-3ubuntu1 [349 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage-common all 2.9-3build1 [9736 B] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage1 s390x 2.9-3build1 [78.4 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libzstd1 s390x 1.4.4+dfsg-1 [217 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x gpgv s390x 2.2.17-3ubuntu1 [186 kB] Get:81 http://ftpmaster.internal/ubuntu focal-proposed/main s390x sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x libsqlite3-0 s390x 3.30.1-1 [504 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x gpg s390x 2.2.17-3ubuntu1 [442 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x gpgconf s390x 2.2.17-3ubuntu1 [119 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x gpg-agent s390x 2.2.17-3ubuntu1 [217 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile-bin s390x 1.16-1.1 [11.4 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile1 s390x 1.16-1.1 [6476 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.3 MB in 3s (17.2 MB/s) (Reading database ... 12530 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18192650 s390x focal-proposed -c chroot:build-PACKAGEBUILD-18192650 --arch=s390x --dist=focal-proposed --nolog ray_2.3.1-7.dsc Initiating build PACKAGEBUILD-18192650 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-169-generic #198-Ubuntu SMP Tue Nov 12 10:34:11 UTC 2019 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-015.buildd +==============================================================================+ | ray 2.3.1-7 (s390x) 02 Dec 2019 17:13 | +==============================================================================+ Package: ray Version: 2.3.1-7 Source Version: 2.3.1-7 Distribution: focal-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/ray-7gScib/ray-2.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/ray-7gScib' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18192650/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ray_2.3.1-7.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-nY1OxQ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-nY1OxQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nY1OxQ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-nY1OxQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nY1OxQ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-nY1OxQ/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-nY1OxQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14465 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), zlib1g-dev, libbz2-dev, mpi-default-dev Filtered Build-Depends: debhelper-compat (= 12), zlib1g-dev, libbz2-dev, mpi-default-dev dpkg-deb: building package 'sbuild-build-depends-ray-dummy' in '/<>/resolver-T0etsq/apt_archive/sbuild-build-depends-ray-dummy.deb'. Ign:1 copy:/<>/resolver-T0etsq/apt_archive ./ InRelease Get:2 copy:/<>/resolver-T0etsq/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-T0etsq/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-T0etsq/apt_archive ./ Sources [236 B] Get:5 copy:/<>/resolver-T0etsq/apt_archive ./ Packages [553 B] Fetched 2908 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ray build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cpp-8 debhelper dh-autoreconf dh-strip-nondeterminism dwz file gcc-8 gcc-8-base gettext gettext-base gfortran-8 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfile-stripnondeterminism-perl libgcc-8-dev libgfortran-8-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libhwloc5 libibverbs-dev libibverbs1 libicu63 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation gcc-8-locales dh-make gcc-8-multilib gcc-8-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-8-multilib gfortran-8-doc libcoarrays-dev groff krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libcoarrays-openmpi-dev xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cpp-8 debhelper dh-autoreconf dh-strip-nondeterminism dwz file gcc-8 gcc-8-base gettext gettext-base gfortran-8 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfile-stripnondeterminism-perl libgcc-8-dev libgfortran-8-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libhwloc5 libibverbs-dev libibverbs1 libicu63 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-ray-dummy zlib1g-dev 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 45.9 MB of archives. After this operation, 171 MB of additional disk space will be used. Get:1 copy:/<>/resolver-T0etsq/apt_archive ./ sbuild-build-depends-ray-dummy 0.invalid.0 [884 B] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libbsd0 s390x 0.10.0-1 [43.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x libuchardet0 s390x 0.0.6-3 [64.5 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x groff-base s390x 1.22.4-3 [819 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x libpipeline1 s390x 1.5.1-2 [24.5 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x man-db s390x 2.9.0-1 [1103 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x libmagic-mgc s390x 1:5.37-6 [210 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x libmagic1 s390x 1:5.37-6 [72.3 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x file s390x 1:5.37-6 [23.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x libelf1 s390x 0.176-1.1 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http://ftpmaster.internal/ubuntu focal/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x gettext s390x 0.19.8.1-10 [867 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x po-debconf all 1.0.21 [233 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x debhelper all 12.7.1ubuntu1 [875 kB] Get:47 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgfortran5 s390x 9.2.1-21ubuntu1 [359 kB] Get:48 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x libgfortran-8-dev s390x 8.3.0-26ubuntu1 [347 kB] Get:49 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x gfortran-8 s390x 8.3.0-26ubuntu1 [6987 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x libnl-3-200 s390x 3.4.0-1 [50.3 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libnl-route-3-200 s390x 3.4.0-1 [137 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x libibverbs1 s390x 26.0-2 [50.7 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x ibverbs-providers s390x 26.0-2 [226 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-dev s390x 1.0.8-2 [30.6 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x libevent-core-2.1-7 s390x 2.1.11-stable-1 [82.5 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x libevent-extra-2.1-7 s390x 2.1.11-stable-1 [54.6 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libevent-pthreads-2.1-7 s390x 2.1.11-stable-1 [7184 B] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x libevent-openssl-2.1-7 s390x 2.1.11-stable-1 [13.5 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libevent-dev s390x 2.1.11-stable-1 [251 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libltdl7 s390x 2.4.6-11 [37.0 kB] Get:61 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x libhwloc15 s390x 2.1.0+dfsg-2 [116 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libltdl-dev s390x 2.4.6-11 [161 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libnl-3-dev s390x 3.4.0-1 [89.9 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x libnl-route-3-dev s390x 3.4.0-1 [155 kB] Get:65 http://ftpmaster.internal/ubuntu focal/universe s390x libhwloc5 s390x 1.11.13-1 [92.4 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x libpciaccess0 s390x 0.16-0ubuntu1 [16.5 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x ocl-icd-libopencl1 s390x 2.2.11-1ubuntu1 [31.0 kB] Get:68 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x libhwloc-plugins s390x 2.1.0+dfsg-2 [12.4 kB] Get:69 http://ftpmaster.internal/ubuntu focal/universe s390x libpmix2 s390x 3.1.4-1build1 [376 kB] Get:70 http://ftpmaster.internal/ubuntu focal/universe s390x libopenmpi3 s390x 4.0.2-4 [1815 kB] Get:71 http://ftpmaster.internal/ubuntu focal/universe s390x openmpi-common all 4.0.2-4 [150 kB] Get:72 http://ftpmaster.internal/ubuntu focal/universe s390x openmpi-bin s390x 4.0.2-4 [65.4 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1ubuntu3 [173 kB] Get:74 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x libhwloc-dev s390x 2.1.0+dfsg-2 [189 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x libibverbs-dev s390x 26.0-2 [438 kB] Get:76 http://ftpmaster.internal/ubuntu focal/universe s390x libopenmpi-dev s390x 4.0.2-4 [797 kB] Get:77 http://ftpmaster.internal/ubuntu focal/universe s390x mpi-default-dev s390x 1.13 [3748 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.9 MB in 4s (12.6 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 14465 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_s390x.deb ... Unpacking libbsd0:s390x (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../02-libuchardet0_0.0.6-3_s390x.deb ... Unpacking libuchardet0:s390x (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_s390x.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../04-libpipeline1_1.5.1-2_s390x.deb ... Unpacking libpipeline1:s390x (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-1_s390x.deb ... Unpacking man-db (2.9.0-1) ... 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Preparing to unpack .../58-libltdl7_2.4.6-11_s390x.deb ... Unpacking libltdl7:s390x (2.4.6-11) ... Selecting previously unselected package libhwloc15:s390x. Preparing to unpack .../59-libhwloc15_2.1.0+dfsg-2_s390x.deb ... Unpacking libhwloc15:s390x (2.1.0+dfsg-2) ... Selecting previously unselected package libltdl-dev:s390x. Preparing to unpack .../60-libltdl-dev_2.4.6-11_s390x.deb ... Unpacking libltdl-dev:s390x (2.4.6-11) ... Selecting previously unselected package libnl-3-dev:s390x. Preparing to unpack .../61-libnl-3-dev_3.4.0-1_s390x.deb ... Unpacking libnl-3-dev:s390x (3.4.0-1) ... Selecting previously unselected package libnl-route-3-dev:s390x. Preparing to unpack .../62-libnl-route-3-dev_3.4.0-1_s390x.deb ... Unpacking libnl-route-3-dev:s390x (3.4.0-1) ... Selecting previously unselected package libhwloc5:s390x. Preparing to unpack .../63-libhwloc5_1.11.13-1_s390x.deb ... Unpacking libhwloc5:s390x (1.11.13-1) ... Selecting previously unselected package libpciaccess0:s390x. Preparing to unpack .../64-libpciaccess0_0.16-0ubuntu1_s390x.deb ... Unpacking libpciaccess0:s390x (0.16-0ubuntu1) ... Selecting previously unselected package ocl-icd-libopencl1:s390x. Preparing to unpack .../65-ocl-icd-libopencl1_2.2.11-1ubuntu1_s390x.deb ... Unpacking ocl-icd-libopencl1:s390x (2.2.11-1ubuntu1) ... Selecting previously unselected package libhwloc-plugins:s390x. Preparing to unpack .../66-libhwloc-plugins_2.1.0+dfsg-2_s390x.deb ... Unpacking libhwloc-plugins:s390x (2.1.0+dfsg-2) ... Selecting previously unselected package libpmix2:s390x. Preparing to unpack .../67-libpmix2_3.1.4-1build1_s390x.deb ... Unpacking libpmix2:s390x (3.1.4-1build1) ... Selecting previously unselected package libopenmpi3:s390x. Preparing to unpack .../68-libopenmpi3_4.0.2-4_s390x.deb ... Unpacking libopenmpi3:s390x (4.0.2-4) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../69-openmpi-common_4.0.2-4_all.deb ... Unpacking openmpi-common (4.0.2-4) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../70-openmpi-bin_4.0.2-4_s390x.deb ... Unpacking openmpi-bin (4.0.2-4) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../71-zlib1g-dev_1%3a1.2.11.dfsg-1ubuntu3_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu3) ... Selecting previously unselected package libhwloc-dev:s390x. Preparing to unpack .../72-libhwloc-dev_2.1.0+dfsg-2_s390x.deb ... Unpacking libhwloc-dev:s390x (2.1.0+dfsg-2) ... Selecting previously unselected package libibverbs-dev:s390x. Preparing to unpack .../73-libibverbs-dev_26.0-2_s390x.deb ... Unpacking libibverbs-dev:s390x (26.0-2) ... Selecting previously unselected package libopenmpi-dev:s390x. Preparing to unpack .../74-libopenmpi-dev_4.0.2-4_s390x.deb ... Unpacking libopenmpi-dev:s390x (4.0.2-4) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../75-mpi-default-dev_1.13_s390x.deb ... Unpacking mpi-default-dev (1.13) ... Selecting previously unselected package sbuild-build-depends-ray-dummy. Preparing to unpack .../76-sbuild-build-depends-ray-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-ray-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.1-2) ... Setting up libpciaccess0:s390x (0.16-0ubuntu1) ... Setting up libkeyutils1:s390x (1.6-6ubuntu1) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:s390x (2.63.1-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libmagic1:s390x (1:5.37-6) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libicu63:s390x (63.2-2) ... Setting up libkrb5support0:s390x (1.17-6) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up libevent-core-2.1-7:s390x (2.1.11-stable-1) ... Setting up libevent-2.1-7:s390x (2.1.11-stable-1) ... Setting up gcc-8-base:s390x (8.3.0-26ubuntu1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libk5crypto3:s390x (1.17-6) ... Setting up libltdl7:s390x (2.4.6-11) ... Setting up libgcc-8-dev:s390x (8.3.0-26ubuntu1) ... Setting up libgfortran5:s390x (9.2.1-21ubuntu1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu3) ... Setting up ocl-icd-libopencl1:s390x (2.2.11-1ubuntu1) ... Setting up libuchardet0:s390x (0.0.6-3) ... Setting up libnl-3-200:s390x (3.4.0-1) ... Setting up openmpi-common (4.0.2-4) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:s390x (1.17-6) ... Setting up cpp-8 (8.3.0-26ubuntu1) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.176-1.1) ... Setting up libxml2:s390x (2.9.4+dfsg1-8ubuntu1) ... Setting up libevent-pthreads-2.1-7:s390x (2.1.11-stable-1) ... Setting up libbz2-dev:s390x (1.0.8-2) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libgfortran-8-dev:s390x (8.3.0-26ubuntu1) ... Setting up libevent-extra-2.1-7:s390x (2.1.11-stable-1) ... Setting up gcc-8 (8.3.0-26ubuntu1) ... Setting up libtool (2.4.6-11) ... Setting up libhwloc5:s390x (1.11.13-1) ... Setting up gfortran-8 (8.3.0-26ubuntu1) ... Setting up libedit2:s390x (3.1-20191025-1) ... Setting up libevent-openssl-2.1-7:s390x (2.1.11-stable-1) ... Setting up m4 (1.4.18-4) ... Setting up libnl-route-3-200:s390x (3.4.0-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libevent-dev (2.1.11-stable-1) ... Setting up libhwloc15:s390x (2.1.0+dfsg-2) ... Setting up libgssapi-krb5-2:s390x (1.17-6) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-4) ... Setting up libnl-3-dev:s390x (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:s390x (26.0-2) ... Setting up gettext (0.19.8.1-10) ... Setting up ibverbs-providers:s390x (26.0-2) ... Setting up openssh-client (1:8.1p1-1) ... Setting up libhwloc-plugins:s390x (2.1.0+dfsg-2) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:s390x (3.4.0-1) ... Setting up libltdl-dev:s390x (2.4.6-11) ... Setting up libhwloc-dev:s390x (2.1.0+dfsg-2) ... Setting up libpmix2:s390x (3.1.4-1build1) ... Setting up po-debconf (1.0.21) ... Setting up libopenmpi3:s390x (4.0.2-4) ... Setting up libibverbs-dev:s390x (26.0-2) ... Setting up openmpi-bin (4.0.2-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:s390x (4.0.2-4) ... update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up sbuild-build-depends-ray-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-169-generic s390x (s390x) Toolchain package versions: binutils_2.33.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-8_8.3.0-26ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.3.0-24.26 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.4 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu1 base-passwd_3.5.46 bash_5.0-5ubuntu1 binutils_2.33.1-1ubuntu1 binutils-common_2.33.1-1ubuntu1 binutils-s390x-linux-gnu_2.33.1-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu3 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-8_8.3.0-26ubuntu1 cpp-9_9.2.1-21ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-4 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu3 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-8_8.3.0-26ubuntu1 gcc-8-base_8.3.0-26ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran-8_8.3.0-26ubuntu1 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.3-1build1 groff-base_1.22.4-3 gzip_1.10-0ubuntu3 hostname_3.23 ibverbs-providers_26.0-2 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapparmor1_2.13.3-5ubuntu5 libapt-pkg5.90_1.9.4 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-21ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-21ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu3 libaudit1_1:2.8.5-2ubuntu3 libbinutils_2.33.1-1ubuntu1 libblkid1_2.34-0.1ubuntu3 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-21ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu1 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libedit2_3.1-20191025-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu3 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-8-dev_8.3.0-26ubuntu1 libgcc-9-dev_9.2.1-21ubuntu1 libgcc1_1:9.2.1-21ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-8-dev_8.3.0-26ubuntu1 libgfortran5_9.2.1-21ubuntu1 libglib2.0-0_2.63.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-5 libgomp1_9.2.1-21ubuntu1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_2.1.0+dfsg-2 libhwloc-plugins_2.1.0+dfsg-2 libhwloc15_2.1.0+dfsg-2 libhwloc5_1.11.13-1 libibverbs-dev_26.0-2 libibverbs1_26.0-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_9.2.1-21ubuntu1 libjson-c4_0.13.1+dfsg-6 libk5crypto3_1.17-6 libkeyutils1_1.6-6ubuntu1 libkmod2_26-3ubuntu1 libkrb5-3_1.17-6 libkrb5support0_1.17-6 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 libltdl-dev_2.4.6-11 libltdl7_2.4.6-11 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu3 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-1 libopenmpi-dev_4.0.2-4 libopenmpi3_4.0.2-4 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpciaccess0_0.16-0ubuntu1 libpcre2-8-0_10.34-1 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libpmix2_3.1.4-1build1 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu1 libselinux1_2.9-3 libsemanage-common_2.9-3build1 libsemanage1_2.9-3build1 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu3 libsqlite3-0_3.30.1-1 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 libsub-override-perl_0.09-2 libsystemd0_243-3ubuntu1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libubsan1_9.2.1-21ubuntu1 libuchardet0_0.0.6-3 libudev1_243-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu3 libxml2_2.9.4+dfsg1-8ubuntu1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-24.26 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu3 mpi-default-dev_1.13 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_4.0.2-4 openmpi-common_4.0.2-4 openssh-client_1:8.1p1-1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ray-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_243-3ubuntu1 systemd-sysv_243-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Dec 2 12:26:29 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ray_2.3.1-7.dsc dpkg-source: info: extracting ray in ray-2.3.1 dpkg-source: info: unpacking ray_2.3.1.orig.tar.bz2 dpkg-source: info: unpacking ray_2.3.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying mips.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying stable-link-order.patch dpkg-source: info: applying 2to3.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18192650 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18192650 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18192650 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ray dpkg-buildpackage: info: source version 2.3.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean -- CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make -j4 clean "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make[2]: Entering directory '/<>' make -w -j4 --jobserver-auth=3,4 -C RayPlatform clean make[3]: Entering directory '/<>' make[3]: warning: -j4 forced in submake: resetting jobserver mode. echo CLEAN RayPlatform CLEAN RayPlatform rm -f libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o make[3]: Leaving directory '/<>/RayPlatform' echo CLEAN Ray plugins CLEAN Ray plugins rm -f Ray PREFIX code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o libRay.a libRayPlatform.a code/application_core/ray_main.o make[2]: Leaving directory '/<>' rm -rf install-prefix rm -f README.Ray README.RayPlatform make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" DEBLDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make -j4 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "DEBLDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make[2]: Entering directory '/<>' echo " CXX code/application_core/ray_main.o" echo " CXX code/Amos/Amos.o" echo " CXX code/CoverageGatherer/CoverageGatherer.o" CXX code/application_core/ray_main.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o CXX code/Amos/Amos.o CXX code/CoverageGatherer/CoverageGatherer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Amos/Amos.cpp -o code/Amos/Amos.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageGatherer.cpp -o code/CoverageGatherer/CoverageGatherer.o echo " CXX code/CoverageGatherer/CoverageDistribution.o" CXX code/CoverageGatherer/CoverageDistribution.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageDistribution.cpp -o code/CoverageGatherer/CoverageDistribution.o echo " CXX code/EdgePurger/EdgePurger.o" CXX code/EdgePurger/EdgePurger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o echo " CXX code/EdgePurger/EdgePurgerWorker.o" CXX code/EdgePurger/EdgePurgerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurgerWorker.cpp -o code/EdgePurger/EdgePurgerWorker.o echo " CXX code/Example/Example.o" CXX code/Example/Example.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o echo " CXX code/FusionData/FusionData.o" CXX code/FusionData/FusionData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o echo " CXX code/FusionTaskCreator/FusionWorker.o" CXX code/FusionTaskCreator/FusionWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionWorker.cpp -o code/FusionTaskCreator/FusionWorker.o echo " CXX code/FusionTaskCreator/FusionTaskCreator.o" CXX code/FusionTaskCreator/FusionTaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionTaskCreator.cpp -o code/FusionTaskCreator/FusionTaskCreator.o echo " CXX code/GeneOntology/KeyEncoder.o" CXX code/GeneOntology/KeyEncoder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/KeyEncoder.cpp -o code/GeneOntology/KeyEncoder.o echo " CXX code/GeneOntology/GeneOntology.o" CXX code/GeneOntology/GeneOntology.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/GeneOntology.cpp -o code/GeneOntology/GeneOntology.o echo " CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o" CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/GenomeNeighbourhood.cpp -o code/GenomeNeighbourhood/GenomeNeighbourhood.o echo " CXX code/GenomeNeighbourhood/Neighbour.o" CXX code/GenomeNeighbourhood/Neighbour.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/Neighbour.cpp -o code/GenomeNeighbourhood/Neighbour.o echo " CXX code/GenomeNeighbourhood/NeighbourPair.o" CXX code/GenomeNeighbourhood/NeighbourPair.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/NeighbourPair.cpp -o code/GenomeNeighbourhood/NeighbourPair.o echo " CXX code/JoinerTaskCreator/JoinerWorker.o" CXX code/JoinerTaskCreator/JoinerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerWorker.cpp -o code/JoinerTaskCreator/JoinerWorker.o echo " CXX code/JoinerTaskCreator/JoinerTaskCreator.o" CXX code/JoinerTaskCreator/JoinerTaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerTaskCreator.cpp -o code/JoinerTaskCreator/JoinerTaskCreator.o echo " CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o" CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/KmerAcademyBuilder.cpp -o code/KmerAcademyBuilder/KmerAcademyBuilder.o echo " CXX code/KmerAcademyBuilder/BloomFilter.o" CXX code/KmerAcademyBuilder/BloomFilter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/BloomFilter.cpp -o code/KmerAcademyBuilder/BloomFilter.o echo " CXX code/KmerAcademyBuilder/Kmer.o" CXX code/KmerAcademyBuilder/Kmer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/Kmer.cpp -o code/KmerAcademyBuilder/Kmer.o echo " CXX code/Library/LibraryPeakFinder.o" CXX code/Library/LibraryPeakFinder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryPeakFinder.cpp -o code/Library/LibraryPeakFinder.o echo " CXX code/Library/LibraryWorker.o" CXX code/Library/LibraryWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryWorker.cpp -o code/Library/LibraryWorker.o echo " CXX code/Library/Library.o" CXX code/Library/Library.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/Library.cpp -o code/Library/Library.o echo " CXX code/MachineHelper/MachineHelper.o" CXX code/MachineHelper/MachineHelper.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MachineHelper/MachineHelper.cpp -o code/MachineHelper/MachineHelper.o echo " CXX code/MessageProcessor/MessageProcessor.o" CXX code/MessageProcessor/MessageProcessor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MessageProcessor/MessageProcessor.cpp -o code/MessageProcessor/MessageProcessor.o echo " CXX code/Mock/Parameters.o" CXX code/Mock/Parameters.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Parameters.cpp -o code/Mock/Parameters.o echo " CXX code/Mock/common_functions.o" CXX code/Mock/common_functions.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/common_functions.cpp -o code/Mock/common_functions.o echo " CXX code/Mock/Mock.o" CXX code/Mock/Mock.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Mock.cpp -o code/Mock/Mock.o echo " CXX code/NetworkTest/NetworkTest.o" CXX code/NetworkTest/NetworkTest.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/NetworkTest/NetworkTest.cpp -o code/NetworkTest/NetworkTest.o echo " CXX code/Partitioner/Partitioner.o" CXX code/Partitioner/Partitioner.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Partitioner/Partitioner.cpp -o code/Partitioner/Partitioner.o echo " CXX code/PathEvaluator/PathEvaluator.o" CXX code/PathEvaluator/PathEvaluator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/PathEvaluator/PathEvaluator.cpp -o code/PathEvaluator/PathEvaluator.o echo " CXX code/Scaffolder/Scaffolder.o" CXX code/Scaffolder/Scaffolder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/Scaffolder.cpp -o code/Scaffolder/Scaffolder.o echo " CXX code/Scaffolder/ScaffoldingLink.o" CXX code/Scaffolder/ScaffoldingLink.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingLink.cpp -o code/Scaffolder/ScaffoldingLink.o echo " CXX code/Scaffolder/SummarizedLink.o" CXX code/Scaffolder/SummarizedLink.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/SummarizedLink.cpp -o code/Scaffolder/SummarizedLink.o echo " CXX code/Scaffolder/ScaffoldingAlgorithm.o" CXX code/Scaffolder/ScaffoldingAlgorithm.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingAlgorithm.cpp -o code/Scaffolder/ScaffoldingAlgorithm.o echo " CXX code/Scaffolder/ScaffoldingVertex.o" CXX code/Scaffolder/ScaffoldingVertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingVertex.cpp -o code/Scaffolder/ScaffoldingVertex.o echo " CXX code/Scaffolder/ScaffoldingEdge.o" CXX code/Scaffolder/ScaffoldingEdge.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingEdge.cpp -o code/Scaffolder/ScaffoldingEdge.o echo " CXX code/Searcher/Searcher.o" CXX code/Searcher/Searcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/Searcher.cpp -o code/Searcher/Searcher.o echo " CXX code/Searcher/SearchDirectory.o" CXX code/Searcher/SearchDirectory.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/SearchDirectory.cpp -o code/Searcher/SearchDirectory.o echo " CXX code/Searcher/ContigSearchEntry.o" CXX code/Searcher/ContigSearchEntry.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigSearchEntry.cpp -o code/Searcher/ContigSearchEntry.o code/Searcher/SearchDirectory.cpp: In member function ‘void SearchDirectory::readLineFromFile(char*, int)’: code/Searcher/SearchDirectory.cpp:320:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 320 | fgets(line,length,m_currentFileStream); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ echo " CXX code/Searcher/ContigHit.o" CXX code/Searcher/ContigHit.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigHit.cpp -o code/Searcher/ContigHit.o echo " CXX code/Searcher/ColorSet.o" CXX code/Searcher/ColorSet.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o echo " CXX code/Searcher/VirtualKmerColor.o" CXX code/Searcher/VirtualKmerColor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/VirtualKmerColor.cpp -o code/Searcher/VirtualKmerColor.o echo " CXX code/Searcher/QualityCaller.o" CXX code/Searcher/QualityCaller.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/QualityCaller.cpp -o code/Searcher/QualityCaller.o echo " CXX code/Searcher/DistributionWriter.o" CXX code/Searcher/DistributionWriter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/DistributionWriter.cpp -o code/Searcher/DistributionWriter.o echo " CXX code/Searcher/ColoredPeakFinder.o" CXX code/Searcher/ColoredPeakFinder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColoredPeakFinder.cpp -o code/Searcher/ColoredPeakFinder.o echo " CXX code/SeedExtender/SeedExtender.o" CXX code/SeedExtender/SeedExtender.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/SeedExtender.cpp -o code/SeedExtender/SeedExtender.o echo " CXX code/SeedExtender/Direction.o" CXX code/SeedExtender/Direction.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Direction.cpp -o code/SeedExtender/Direction.o echo " CXX code/SeedExtender/VertexMessenger.o" CXX code/SeedExtender/VertexMessenger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/VertexMessenger.cpp -o code/SeedExtender/VertexMessenger.o echo " CXX code/SeedExtender/ReadFetcher.o" CXX code/SeedExtender/ReadFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ReadFetcher.cpp -o code/SeedExtender/ReadFetcher.o echo " CXX code/SeedExtender/BubbleTool.o" CXX code/SeedExtender/BubbleTool.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/BubbleTool.cpp -o code/SeedExtender/BubbleTool.o echo " CXX code/SeedExtender/Chooser.o" CXX code/SeedExtender/Chooser.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Chooser.cpp -o code/SeedExtender/Chooser.o echo " CXX code/SeedExtender/OpenAssemblerChooser.o" CXX code/SeedExtender/OpenAssemblerChooser.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/OpenAssemblerChooser.cpp -o code/SeedExtender/OpenAssemblerChooser.o echo " CXX code/SeedExtender/TipWatchdog.o" CXX code/SeedExtender/TipWatchdog.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/TipWatchdog.cpp -o code/SeedExtender/TipWatchdog.o echo " CXX code/SeedExtender/NovaEngine.o" CXX code/SeedExtender/NovaEngine.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/NovaEngine.cpp -o code/SeedExtender/NovaEngine.o echo " CXX code/SeedExtender/ExtensionElement.o" CXX code/SeedExtender/ExtensionElement.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionElement.cpp -o code/SeedExtender/ExtensionElement.o echo " CXX code/SeedExtender/DepthFirstSearchData.o" CXX code/SeedExtender/DepthFirstSearchData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/DepthFirstSearchData.cpp -o code/SeedExtender/DepthFirstSearchData.o echo " CXX code/SeedExtender/ExtensionData.o" CXX code/SeedExtender/ExtensionData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionData.cpp -o code/SeedExtender/ExtensionData.o echo " CXX code/SeedingData/GraphPath.o" CXX code/SeedingData/GraphPath.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/GraphPath.cpp -o code/SeedingData/GraphPath.o echo " CXX code/SeedingData/SeedWorker.o" CXX code/SeedingData/SeedWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedWorker.cpp -o code/SeedingData/SeedWorker.o echo " CXX code/SeedingData/SeedingData.o" CXX code/SeedingData/SeedingData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedingData.cpp -o code/SeedingData/SeedingData.o echo " CXX code/SeedingData/PathHandle.o" CXX code/SeedingData/PathHandle.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/PathHandle.cpp -o code/SeedingData/PathHandle.o echo " CXX code/SequencesIndexer/SequencesIndexer.o" CXX code/SequencesIndexer/SequencesIndexer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/SequencesIndexer.cpp -o code/SequencesIndexer/SequencesIndexer.o echo " CXX code/SequencesIndexer/IndexerWorker.o" CXX code/SequencesIndexer/IndexerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/IndexerWorker.cpp -o code/SequencesIndexer/IndexerWorker.o echo " CXX code/SequencesIndexer/PairedRead.o" CXX code/SequencesIndexer/PairedRead.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/PairedRead.cpp -o code/SequencesIndexer/PairedRead.o echo " CXX code/SequencesIndexer/ReadAnnotation.o" CXX code/SequencesIndexer/ReadAnnotation.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/ReadAnnotation.cpp -o code/SequencesIndexer/ReadAnnotation.o echo " CXX code/SequencesLoader/SequencesLoader.o" CXX code/SequencesLoader/SequencesLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequencesLoader.cpp -o code/SequencesLoader/SequencesLoader.o echo " CXX code/SequencesLoader/Read.o" CXX code/SequencesLoader/Read.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Read.cpp -o code/SequencesLoader/Read.o echo " CXX code/SequencesLoader/ArrayOfReads.o" CXX code/SequencesLoader/ArrayOfReads.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ArrayOfReads.cpp -o code/SequencesLoader/ArrayOfReads.o echo " CXX code/SequencesLoader/ColorSpaceDecoder.o" CXX code/SequencesLoader/ColorSpaceDecoder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceDecoder.cpp -o code/SequencesLoader/ColorSpaceDecoder.o echo " CXX code/SequencesLoader/ColorSpaceLoader.o" CXX code/SequencesLoader/ColorSpaceLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceLoader.cpp -o code/SequencesLoader/ColorSpaceLoader.o echo " CXX code/SequencesLoader/FastaLoader.o" CXX code/SequencesLoader/FastaLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoader.cpp -o code/SequencesLoader/FastaLoader.o echo " CXX code/SequencesLoader/FastaLoaderForReads.o" CXX code/SequencesLoader/FastaLoaderForReads.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoaderForReads.cpp -o code/SequencesLoader/FastaLoaderForReads.o echo " CXX code/SequencesLoader/FastqLoader.o" CXX code/SequencesLoader/FastqLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqLoader.cpp -o code/SequencesLoader/FastqLoader.o echo " CXX code/SequencesLoader/ExportLoader.o" CXX code/SequencesLoader/ExportLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ExportLoader.cpp -o code/SequencesLoader/ExportLoader.o echo " CXX code/SequencesLoader/LoaderInterface.o" CXX code/SequencesLoader/LoaderInterface.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderInterface.cpp -o code/SequencesLoader/LoaderInterface.o echo " CXX code/SequencesLoader/LoaderFactory.o" CXX code/SequencesLoader/LoaderFactory.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderFactory.cpp -o code/SequencesLoader/LoaderFactory.o echo " CXX code/SequencesLoader/SffLoader.o" CXX code/SequencesLoader/SffLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SffLoader.cpp -o code/SequencesLoader/SffLoader.o echo " CXX code/SequencesLoader/Loader.o" CXX code/SequencesLoader/Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Loader.cpp -o code/SequencesLoader/Loader.o echo " CXX code/SequencesLoader/BufferedReader.o" CXX code/SequencesLoader/BufferedReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BufferedReader.cpp -o code/SequencesLoader/BufferedReader.o echo " CXX code/SequencesLoader/ReadHandle.o" CXX code/SequencesLoader/ReadHandle.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ReadHandle.cpp -o code/SequencesLoader/ReadHandle.o echo " CXX code/SequencesLoader/BzReader.o" CXX code/SequencesLoader/BzReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BzReader.cpp -o code/SequencesLoader/BzReader.o echo " CXX code/SequencesLoader/FastqBz2Loader.o" CXX code/SequencesLoader/FastqBz2Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqBz2Loader.cpp -o code/SequencesLoader/FastqBz2Loader.o echo " CXX code/SequencesLoader/FastaBz2Loader.o" CXX code/SequencesLoader/FastaBz2Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaBz2Loader.cpp -o code/SequencesLoader/FastaBz2Loader.o echo " CXX code/SequencesLoader/FastqGzLoader.o" CXX code/SequencesLoader/FastqGzLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqGzLoader.cpp -o code/SequencesLoader/FastqGzLoader.o echo " CXX code/SequencesLoader/FastaGzLoader.o" CXX code/SequencesLoader/FastaGzLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaGzLoader.cpp -o code/SequencesLoader/FastaGzLoader.o echo " CXX code/SequencesLoader/SequenceFileDetector.o" CXX code/SequencesLoader/SequenceFileDetector.o echo " CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o" mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequenceFileDetector.cpp -o code/SequencesLoader/SequenceFileDetector.o CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.cpp -o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o echo " CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o" CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnihilationWorker.cpp -o code/SpuriousSeedAnnihilator/AnnihilationWorker.o echo " CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o" CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o echo " CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o" CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AttributeFetcher.cpp -o code/SpuriousSeedAnnihilator/AttributeFetcher.o echo " CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o" CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnotationFetcher.cpp -o code/SpuriousSeedAnnihilator/AnnotationFetcher.o echo " CXX code/SpuriousSeedAnnihilator/NanoMerger.o" CXX code/SpuriousSeedAnnihilator/NanoMerger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/NanoMerger.cpp -o code/SpuriousSeedAnnihilator/NanoMerger.o echo " CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o" CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedMergingWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o echo " CXX code/SpuriousSeedAnnihilator/GraphExplorer.o" CXX code/SpuriousSeedAnnihilator/GraphExplorer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphExplorer.cpp -o code/SpuriousSeedAnnihilator/GraphExplorer.o echo " CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o" CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphSearchResult.cpp -o code/SpuriousSeedAnnihilator/GraphSearchResult.o echo " CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o" CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp -o code/SpuriousSeedAnnihilator/SeedGossipSolver.o echo " CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o" CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GossipAssetManager.cpp -o code/SpuriousSeedAnnihilator/GossipAssetManager.o echo " CXX code/Surveyor/Mother.o" CXX code/Surveyor/Mother.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/Mother.cpp -o code/Surveyor/Mother.o echo " CXX code/Surveyor/StoreKeeper.o" CXX code/Surveyor/StoreKeeper.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/StoreKeeper.cpp -o code/Surveyor/StoreKeeper.o echo " CXX code/Surveyor/GenomeGraphReader.o" CXX code/Surveyor/GenomeGraphReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/GenomeGraphReader.cpp -o code/Surveyor/GenomeGraphReader.o echo " CXX code/Surveyor/CoalescenceManager.o" CXX code/Surveyor/CoalescenceManager.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/CoalescenceManager.cpp -o code/Surveyor/CoalescenceManager.o echo " CXX code/Surveyor/ExperimentVertex.o" CXX code/Surveyor/ExperimentVertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/ExperimentVertex.cpp -o code/Surveyor/ExperimentVertex.o echo " CXX code/Surveyor/MatrixOwner.o" CXX code/Surveyor/MatrixOwner.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/MatrixOwner.cpp -o code/Surveyor/MatrixOwner.o echo " CXX code/TaxonomyViewer/TaxonomyViewer.o" CXX code/TaxonomyViewer/TaxonomyViewer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomyViewer.cpp -o code/TaxonomyViewer/TaxonomyViewer.o echo " CXX code/TaxonomyViewer/GenomeToTaxonLoader.o" CXX code/TaxonomyViewer/GenomeToTaxonLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/GenomeToTaxonLoader.cpp -o code/TaxonomyViewer/GenomeToTaxonLoader.o echo " CXX code/TaxonomyViewer/TaxonomicTreeLoader.o" CXX code/TaxonomyViewer/TaxonomicTreeLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomicTreeLoader.cpp -o code/TaxonomyViewer/TaxonomicTreeLoader.o echo " CXX code/TaxonomyViewer/TaxonNameLoader.o" CXX code/TaxonomyViewer/TaxonNameLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonNameLoader.cpp -o code/TaxonomyViewer/TaxonNameLoader.o echo " CXX code/VerticesExtractor/VerticesExtractor.o" CXX code/VerticesExtractor/VerticesExtractor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/VerticesExtractor.cpp -o code/VerticesExtractor/VerticesExtractor.o echo " CXX code/VerticesExtractor/GridTable.o" CXX code/VerticesExtractor/GridTable.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTable.cpp -o code/VerticesExtractor/GridTable.o echo " CXX code/VerticesExtractor/GridTableIterator.o" CXX code/VerticesExtractor/GridTableIterator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTableIterator.cpp -o code/VerticesExtractor/GridTableIterator.o echo " CXX code/VerticesExtractor/Vertex.o" CXX code/VerticesExtractor/Vertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/Vertex.cpp -o code/VerticesExtractor/Vertex.o echo " CXX code/application_core/Machine.o" CXX code/application_core/Machine.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/Machine.cpp -o code/application_core/Machine.o make -w -j4 --jobserver-auth=3,4 -C RayPlatform make[3]: Entering directory '/<>' make[3]: warning: -j4 forced in submake: resetting jobserver mode. echo " CXX RayPlatform/memory/ReusableMemoryStore.o" echo " CXX RayPlatform/memory/MyAllocator.o" CXX RayPlatform/memory/ReusableMemoryStore.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/ReusableMemoryStore.cpp CXX RayPlatform/memory/MyAllocator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/MyAllocator.o RayPlatform/memory/MyAllocator.cpp echo " CXX RayPlatform/memory/RingAllocator.o" echo " CXX RayPlatform/memory/allocator.o" CXX RayPlatform/memory/RingAllocator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp CXX RayPlatform/memory/allocator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/allocator.o RayPlatform/memory/allocator.cpp echo " CXX RayPlatform/memory/DefragmentationGroup.o" CXX RayPlatform/memory/DefragmentationGroup.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/DefragmentationGroup.cpp echo " CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o" CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp echo " CXX RayPlatform/memory/DefragmentationLane.o" CXX RayPlatform/memory/DefragmentationLane.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DefragmentationLane.cpp echo " CXX RayPlatform/memory/DirtyBuffer.o" CXX RayPlatform/memory/DirtyBuffer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp echo " CXX RayPlatform/routing/ConnectionGraph.o" CXX RayPlatform/routing/ConnectionGraph.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/ConnectionGraph.cpp echo " CXX RayPlatform/routing/GraphImplementation.o" CXX RayPlatform/routing/GraphImplementation.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp echo " CXX RayPlatform/routing/GraphImplementationRandom.o" CXX RayPlatform/routing/GraphImplementationRandom.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationRandom.cpp echo " CXX RayPlatform/routing/GraphImplementationComplete.o" CXX RayPlatform/routing/GraphImplementationComplete.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationComplete.cpp echo " CXX RayPlatform/routing/GraphImplementationDeBruijn.o" CXX RayPlatform/routing/GraphImplementationDeBruijn.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationDeBruijn.cpp echo " CXX RayPlatform/routing/GraphImplementationKautz.o" CXX RayPlatform/routing/GraphImplementationKautz.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationKautz.cpp echo " CXX RayPlatform/routing/GraphImplementationExperimental.o" CXX RayPlatform/routing/GraphImplementationExperimental.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp echo " CXX RayPlatform/routing/GraphImplementationGroup.o" CXX RayPlatform/routing/GraphImplementationGroup.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp echo " CXX RayPlatform/routing/Polytope.o" CXX RayPlatform/routing/Polytope.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp echo " CXX RayPlatform/routing/Torus.o" CXX RayPlatform/routing/Torus.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Torus.o RayPlatform/routing/Torus.cpp echo " CXX RayPlatform/communication/mpi_tags.o" CXX RayPlatform/communication/mpi_tags.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/mpi_tags.o RayPlatform/communication/mpi_tags.cpp echo " CXX RayPlatform/communication/VirtualCommunicator.o" CXX RayPlatform/communication/VirtualCommunicator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/VirtualCommunicator.cpp echo " CXX RayPlatform/communication/BufferedData.o" CXX RayPlatform/communication/BufferedData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/BufferedData.o RayPlatform/communication/BufferedData.cpp echo " CXX RayPlatform/communication/Message.o" CXX RayPlatform/communication/Message.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/Message.o RayPlatform/communication/Message.cpp echo " CXX RayPlatform/communication/MessagesHandler.o" CXX RayPlatform/communication/MessagesHandler.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessagesHandler.cpp echo " CXX RayPlatform/communication/MessageQueue.o" CXX RayPlatform/communication/MessageQueue.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageQueue.cpp echo " CXX RayPlatform/communication/MessageRouter.o" CXX RayPlatform/communication/MessageRouter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageRouter.o RayPlatform/communication/MessageRouter.cpp echo " CXX RayPlatform/scheduling/VirtualProcessor.o" CXX RayPlatform/scheduling/VirtualProcessor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/VirtualProcessor.cpp echo " CXX RayPlatform/scheduling/TaskCreator.o" CXX RayPlatform/scheduling/TaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/TaskCreator.cpp echo " CXX RayPlatform/scheduling/SwitchMan.o" CXX RayPlatform/scheduling/SwitchMan.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/SwitchMan.o RayPlatform/scheduling/SwitchMan.cpp echo " AR libRay.a" AR libRay.a ar rcs libRay.a code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o echo " CXX RayPlatform/core/ComputeCore.o" CXX RayPlatform/core/ComputeCore.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/ComputeCore.o RayPlatform/core/ComputeCore.cpp echo " CXX RayPlatform/core/MiniRank.o" CXX RayPlatform/core/MiniRank.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/MiniRank.o RayPlatform/core/MiniRank.cpp echo " CXX RayPlatform/core/slave_modes.o" CXX RayPlatform/core/slave_modes.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/slave_modes.o RayPlatform/core/slave_modes.cpp echo " CXX RayPlatform/core/OperatingSystem.o" CXX RayPlatform/core/OperatingSystem.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/OperatingSystem.o RayPlatform/core/OperatingSystem.cpp echo " CXX RayPlatform/core/master_modes.o" CXX RayPlatform/core/master_modes.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/master_modes.o RayPlatform/core/master_modes.cpp echo " CXX RayPlatform/core/statistics.o" CXX RayPlatform/core/statistics.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/statistics.o RayPlatform/core/statistics.cpp echo " CXX RayPlatform/plugins/CorePlugin.o" CXX RayPlatform/plugins/CorePlugin.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/CorePlugin.cpp echo " CXX RayPlatform/plugins/RegisteredPlugin.o" CXX RayPlatform/plugins/RegisteredPlugin.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/plugins/RegisteredPlugin.cpp echo " CXX RayPlatform/structures/StaticVector.o" CXX RayPlatform/structures/StaticVector.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/structures/StaticVector.o RayPlatform/structures/StaticVector.cpp echo " CXX RayPlatform/profiling/Profiler.o" CXX RayPlatform/profiling/Profiler.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Profiler.cpp echo " CXX RayPlatform/profiling/Derivative.o" CXX RayPlatform/profiling/Derivative.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Derivative.o RayPlatform/profiling/Derivative.cpp echo " CXX RayPlatform/profiling/TickLogger.o" CXX RayPlatform/profiling/TickLogger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TickLogger.cpp echo " CXX RayPlatform/profiling/TimePrinter.o" CXX RayPlatform/profiling/TimePrinter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/TimePrinter.cpp echo " CXX RayPlatform/profiling/ProcessStatus.o" CXX RayPlatform/profiling/ProcessStatus.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/ProcessStatus.o RayPlatform/profiling/ProcessStatus.cpp echo " CXX RayPlatform/handlers/MasterModeExecutor.o" CXX RayPlatform/handlers/MasterModeExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/MasterModeExecutor.cpp echo " CXX RayPlatform/handlers/SlaveModeExecutor.o" CXX RayPlatform/handlers/SlaveModeExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp echo " CXX RayPlatform/handlers/MessageTagExecutor.o" CXX RayPlatform/handlers/MessageTagExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/handlers/MessageTagExecutor.cpp echo " CXX RayPlatform/cryptography/crypto.o" CXX RayPlatform/cryptography/crypto.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/cryptography/crypto.o RayPlatform/cryptography/crypto.cpp echo " CXX RayPlatform/store/KeyValueStore.o" CXX RayPlatform/store/KeyValueStore.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStore.cpp echo " CXX RayPlatform/store/KeyValueStoreItem.o" CXX RayPlatform/store/KeyValueStoreItem.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreItem.cpp echo " CXX RayPlatform/store/KeyValueStoreRequest.o" CXX RayPlatform/store/KeyValueStoreRequest.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/store/KeyValueStoreRequest.cpp echo " CXX RayPlatform/actors/Actor.o" CXX RayPlatform/actors/Actor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Actor.o RayPlatform/actors/Actor.cpp echo " CXX RayPlatform/actors/Playground.o" CXX RayPlatform/actors/Playground.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Playground.o RayPlatform/actors/Playground.cpp echo " CXX RayPlatform/files/FileReader.o" CXX RayPlatform/files/FileReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/files/FileReader.o RayPlatform/files/FileReader.cpp echo " AR libRayPlatform.a" AR libRayPlatform.a ar rcs libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o make[3]: Leaving directory '/<>/RayPlatform' cp RayPlatform/libRayPlatform.a libRayPlatform.a echo " LD Ray" LD Ray mpicxx code/application_core/ray_main.o libRay.a libRayPlatform.a -oRay -lz -lbz2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread echo install-prefix > PREFIX make[2]: Leaving directory '/<>' #Rename 2 docs to make more sence in package context cp README.md README.Ray cp RayPlatform/README.md README.RayPlatform cp RayPlatform/README.md RayPlatform/README make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' mkdir -p install-prefix echo "" echo "Installing Ray to install-prefix" Installing Ray to install-prefix echo "" cp LICENSE.txt install-prefix cp gpl-3.0.txt install-prefix cp RayPlatform/lgpl-3.0.txt install-prefix cp Ray install-prefix cp -r Documentation install-prefix cp README.md install-prefix cp MANUAL_PAGE.txt install-prefix cp AUTHORS install-prefix cp -r scripts REFIX mkdir install-prefix/RayPlatform cp RayPlatform/AUTHORS install-prefix/RayPlatform cp RayPlatform/README.md install-prefix/RayPlatform cp -r RayPlatform/Documentation install-prefix/RayPlatform make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing ray (in debian/ray); do_strip: , oemstrip: pkgstriptranslations: processing ray-dbgsym (in debian/.debhelper/ray/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ray/DEBIAN/control, package ray, directory debian/ray pkgstripfiles: Running PNG optimization (using 4 cpus) for package ray ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ray' in '../ray_2.3.1-7_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/ray/dbgsym-root/DEBIAN/control, package ray-dbgsym, directory debian/.debhelper/ray/dbgsym-root dpkg-deb: building package 'ray-dbgsym' in 'debian/.debhelper/scratch-space/build-ray/ray-dbgsym_2.3.1-7_s390x.deb'. Renaming ray-dbgsym_2.3.1-7_s390x.deb to ray-dbgsym_2.3.1-7_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ray_2.3.1-7_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20191202-1714 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ray_2.3.1-7_s390x.changes: -------------------------- Format: 1.8 Date: Mon, 02 Dec 2019 12:51:58 +0100 Source: ray Binary: ray Architecture: s390x Version: 2.3.1-7 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: ray - de novo genome assemblies of next-gen sequencing data Closes: 945704 Changes: ray (2.3.1-7) unstable; urgency=medium . * Use 2to3 to port to Python3 Closes: #945704 * debhelper-compat 12 * Standards-Version: 4.4.1 * Remove trailing whitespace in debian/copyright * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g * Use secure URI in debian/watch. * Remove obsolete fields Name from debian/upstream/metadata. * Fix day-of-week for changelog entries 2.1.0-1. Checksums-Sha1: 6e3eebf59d9ae6e546b0ed2ffee24a2cbcce5899 13878944 ray-dbgsym_2.3.1-7_s390x.ddeb 667681e31507e6e9e8d9fdd3bc370abfe05a733b 6362 ray_2.3.1-7_s390x.buildinfo a94f9139d99db2280a6e680f7d25e6cf1edfb29c 812640 ray_2.3.1-7_s390x.deb Checksums-Sha256: d6117b95575a7cd2e130084eea3e8d1e9fd1961c81d8417925107ed23a8b6bfe 13878944 ray-dbgsym_2.3.1-7_s390x.ddeb 1009fd9c770f61554a03ff9123548ab1c969a3565ed8699a267bea5f81240ece 6362 ray_2.3.1-7_s390x.buildinfo 35c98730624277b015c61d5e3a5ee1634b904622f92c5a3a2dc437f5d768d31f 812640 ray_2.3.1-7_s390x.deb Files: 79d62810680c60210a8de36c3305b28d 13878944 debug optional ray-dbgsym_2.3.1-7_s390x.ddeb b61253b10895b4786b2e1a391466cfb1 6362 science optional ray_2.3.1-7_s390x.buildinfo 51b99d8c459902abc2e88dff7a807880 812640 science optional ray_2.3.1-7_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ray_2.3.1-7_s390x.deb --------------------- new debian package, version 2.0. size 812640 bytes: control archive=1280 bytes. 973 bytes, 20 lines control 1078 bytes, 15 lines md5sums Package: ray Version: 2.3.1-7 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2482 Depends: libbz2-1.0, libc6 (>= 2.29), libgcc1 (>= 1:3.0), libopenmpi3 (>= 4.0.2), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), mpi-default-bin Section: science Priority: optional Homepage: http://denovoassembler.sourceforge.net/ Description: de novo genome assemblies of next-gen sequencing data Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard. Included: - Ray de novo assembly of single genomes - Ray Méta de novo assembly of metagenomes - Ray Communities microbe abundance + taxonomic profiling - Ray Ontologies gene ontology profiling drwxr-xr-x root/root 0 2019-12-02 11:51 ./ drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/ drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/bin/ -rwxr-xr-x root/root 2034784 2019-12-02 11:51 ./usr/bin/Ray drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/share/ drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/share/doc/ray/ -rw-r--r-- root/root 331 2014-02-12 19:32 ./usr/share/doc/ray/AUTHORS -rw-r--r-- root/root 5749 2014-02-12 19:32 ./usr/share/doc/ray/MANUAL_PAGE.txt.gz -rw-r--r-- root/root 2870 2019-12-02 11:51 ./usr/share/doc/ray/README.Ray.gz -rw-r--r-- root/root 1584 2019-12-02 11:51 ./usr/share/doc/ray/README.RayPlatform.gz -rw-r--r-- root/root 261 2019-12-02 11:51 ./usr/share/doc/ray/README.test -rw-r--r-- root/root 1469 2019-12-02 11:51 ./usr/share/doc/ray/changelog.Debian.gz -rw-r--r-- root/root 1953 2019-12-02 11:51 ./usr/share/doc/ray/copyright -rw-r--r-- root/root 621 2019-12-02 11:51 ./usr/share/doc/ray/run-unit-test drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/share/doc/ray/test_data/ -rw-r--r-- root/root 58 2019-12-02 11:51 ./usr/share/doc/ray/test_data/Ray.conf drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/share/doc/ray/test_data/SampleDirectory/ -rw-r--r-- root/root 114568 2019-12-02 11:51 ./usr/share/doc/ray/test_data/SampleDirectory/s_6.first1000_1.fastq.gz -rw-r--r-- root/root 119266 2019-12-02 11:51 ./usr/share/doc/ray/test_data/SampleDirectory/s_6.first1000_2.fastq.gz -rw-r--r-- root/root 114568 2019-12-02 11:51 ./usr/share/doc/ray/test_data/ecoli_1K_1.fq.gz -rw-r--r-- root/root 119266 2019-12-02 11:51 ./usr/share/doc/ray/test_data/ecoli_1K_2.fq.gz drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/share/man/ drwxr-xr-x root/root 0 2019-12-02 11:51 ./usr/share/man/man1/ -rw-r--r-- root/root 5335 2019-12-02 11:51 ./usr/share/man/man1/Ray.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 602612 Build-Time: 61 Distribution: focal-proposed Host Architecture: s390x Install-Time: 12 Job: ray_2.3.1-7.dsc Machine Architecture: s390x Package: ray Package-Time: 73 Source-Version: 2.3.1-7 Space: 602612 Status: successful Version: 2.3.1-7 -------------------------------------------------------------------------------- Finished at 20191202-1714 Build needed 00:01:13, 602612k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18192650 Scanning for processes to kill in build PACKAGEBUILD-18192650