RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-034 4.4.0-66-generic #87+buildd1-Ubuntu SMP Thu Mar 9 01:49:33 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_142 python-lpbuildd_142 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.9. Syncing the system clock with the buildd NTP service... 17 Mar 12:43:32 ntpdate[1933]: adjust time server 10.211.37.1 offset 0.001655 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11160516', '/home/buildd/filecache-default/0309f704a9139dce864b78599cddd58acb3f260a'] Unpacking chroot for build PACKAGEBUILD-11160516 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11160516'] Mounting chroot for build PACKAGEBUILD-11160516 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11160516', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11160516 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11160516', 'arm64'] Updating debian chroot for build PACKAGEBUILD-11160516 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [246 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [244 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 Packages [1183 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [582 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe arm64 Packages [7834 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4677 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 Packages [50.9 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [31.7 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 Packages [198 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [94.8 kB] Fetched 15.3 MB in 5s (2702 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libidn2-0 libldap-common libperl5.24 libpsl5 libunistring0 perl-modules-5.24 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils bsdutils bzip2 ca-certificates coreutils cpp cpp-6 debianutils diffutils dmsetup e2fslibs e2fsprogs findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcomerr2 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libisl15 libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblockfile-bin liblockfile1 liblzma5 libmount1 libnettle6 libnpth0 libp11-kit0 libpng16-16 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev make mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym sed systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 115 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 51.5 MB of archives. After this operation, 43.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main arm64 perl-modules-5.24 all 5.24.1-1 [2662 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main arm64 libperl5.24 arm64 5.24.1-1 [3230 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main arm64 perl arm64 5.24.1-1 [219 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main arm64 perl-base arm64 5.24.1-1 [1180 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 libc6-dev arm64 2.24-7ubuntu2 [1928 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main arm64 libc-dev-bin arm64 2.24-7ubuntu2 [59.0 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main arm64 linux-libc-dev arm64 4.10.0-13.15 [870 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgomp1 arm64 6.3.0-9ubuntu1 [61.7 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libitm1 arm64 6.3.0-9ubuntu1 [25.2 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 gcc-6-base arm64 6.3.0-9ubuntu1 [17.7 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgcc1 arm64 1:6.3.0-9ubuntu1 [30.1 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libcc1-0 arm64 6.3.0-9ubuntu1 [27.7 kB] Get:13 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 binutils arm64 2.28-2ubuntu1 [2548 kB] Get:14 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libatomic1 arm64 6.3.0-9ubuntu1 [6658 B] Get:15 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libasan3 arm64 6.3.0-9ubuntu1 [275 kB] Get:16 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libubsan0 arm64 6.3.0-9ubuntu1 [97.5 kB] Get:17 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 g++-6 arm64 6.3.0-9ubuntu1 [5879 kB] Get:18 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libstdc++-6-dev arm64 6.3.0-9ubuntu1 [1410 kB] Get:19 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgcc-6-dev arm64 6.3.0-9ubuntu1 [565 kB] Get:20 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 gcc-6 arm64 6.3.0-9ubuntu1 [5770 kB] Get:21 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 cpp-6 arm64 6.3.0-9ubuntu1 [5148 kB] Get:22 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libstdc++6 arm64 6.3.0-9ubuntu1 [369 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main arm64 zlib1g arm64 1:1.2.11.dfsg-0ubuntu1 [49.3 kB] Get:24 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgmp10 arm64 2:6.1.2+dfsg-1 [200 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main arm64 libisl15 arm64 0.18-1 [420 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main arm64 libc6 arm64 2.24-7ubuntu2 [2198 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 bzip2 arm64 1.0.6-8.1 [31.2 kB] Get:28 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libbz2-1.0 arm64 1.0.6-8.1 [28.7 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main arm64 init-system-helpers all 1.47 [37.8 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main arm64 base-files arm64 9.6ubuntu12 [59.0 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main arm64 debianutils arm64 4.8.1 [84.9 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main arm64 bash arm64 4.4-2ubuntu1 [542 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main arm64 bsdutils arm64 1:2.29-1ubuntu2 [52.2 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main arm64 coreutils arm64 8.26-3ubuntu3 [1043 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main arm64 diffutils arm64 1:3.5-3 [150 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main arm64 e2fslibs arm64 1.43.4-2 [132 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main arm64 e2fsprogs arm64 1.43.4-2 [445 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main arm64 findutils arm64 4.6.0+git+20161106-2 [269 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main arm64 grep arm64 2.27-2 [138 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main arm64 libuuid1 arm64 2.29-1ubuntu2 [13.9 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main arm64 libblkid1 arm64 2.29-1ubuntu2 [90.6 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main arm64 libfdisk1 arm64 2.29-1ubuntu2 [117 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main arm64 libselinux1 arm64 2.6-3 [55.8 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main arm64 util-linux arm64 2.29-1ubuntu2 [832 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main arm64 mount arm64 2.29-1ubuntu2 [122 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main arm64 sed arm64 4.4-1 [174 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main arm64 tar arm64 1.29b-1.1 [197 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main arm64 base-passwd arm64 3.5.43 [47.0 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main arm64 libc-bin arm64 2.24-7ubuntu2 [493 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main arm64 liblzma5 arm64 5.2.2-1.2 [81.2 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main arm64 libapt-pkg5.0 arm64 1.4~rc2 [722 kB] Get:52 http://ftpmaster.internal/ubuntu zesty/main arm64 adduser all 3.113+nmu3ubuntu5 [161 kB] Get:53 http://ftpmaster.internal/ubuntu zesty/main arm64 ubuntu-keyring all 2016.10.27 [16.6 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main arm64 apt arm64 1.4~rc2 [1067 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main arm64 libapparmor1 arm64 2.11.0-2ubuntu2 [27.4 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main arm64 libgpg-error0 arm64 1.26-2 [30.5 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main arm64 libgcrypt20 arm64 1.7.6-1 [307 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main arm64 libmount1 arm64 2.29-1ubuntu2 [98.0 kB] Get:59 http://ftpmaster.internal/ubuntu zesty/main arm64 libseccomp2 arm64 2.3.1-2.1ubuntu1 [32.4 kB] Get:60 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 systemd arm64 232-19 [2042 kB] Get:61 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libsystemd0 arm64 232-19 [169 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main arm64 init arm64 1.47 [5832 B] Get:63 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 systemd-sysv arm64 232-19 [12.3 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main arm64 liblockfile-bin arm64 1.14-1 [10.4 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main arm64 liblockfile1 arm64 1.14-1 [5608 B] Get:66 http://ftpmaster.internal/ubuntu zesty/main arm64 libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main arm64 libcomerr2 arm64 1.43.4-2 [8824 B] Get:68 http://ftpmaster.internal/ubuntu zesty/main arm64 libsepol1 arm64 2.6-2 [176 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main arm64 libustr-1.0-1 arm64 1.0.4-6 [50.8 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main arm64 libsemanage-common all 2.6-2 [6794 B] Get:71 http://ftpmaster.internal/ubuntu zesty/main arm64 libsemanage1 arm64 2.6-2 [67.0 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main arm64 libsmartcols1 arm64 2.29-1ubuntu2 [57.1 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main arm64 libss2 arm64 1.43.4-2 [9620 B] Get:74 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libudev1 arm64 232-19 [46.3 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main arm64 multiarch-support arm64 2.24-7ubuntu2 [6816 B] Get:76 http://ftpmaster.internal/ubuntu zesty/main arm64 tzdata all 2017a-1 [203 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main arm64 libdevmapper1.02.1 arm64 2:1.02.136-1ubuntu2 [110 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main arm64 dmsetup arm64 2:1.02.136-1ubuntu2 [65.0 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main arm64 libroken18-heimdal arm64 7.1.0+dfsg-9ubuntu1 [34.5 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main arm64 libasn1-8-heimdal arm64 7.1.0+dfsg-9ubuntu1 [127 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main arm64 libassuan0 arm64 2.4.3-2 [28.3 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main arm64 libhogweed4 arm64 3.3-1 [128 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main arm64 libnettle6 arm64 3.3-1 [96.0 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main arm64 libp11-kit0 arm64 0.23.3-5 [86.2 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main arm64 libtasn1-6 arm64 4.10-1 [30.7 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main arm64 libgnutls30 arm64 3.5.6-4ubuntu3 [513 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main arm64 libheimbase1-heimdal arm64 7.1.0+dfsg-9ubuntu1 [24.4 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main arm64 libhcrypto4-heimdal arm64 7.1.0+dfsg-9ubuntu1 [74.2 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main arm64 libwind0-heimdal arm64 7.1.0+dfsg-9ubuntu1 [46.9 kB] Get:90 http://ftpmaster.internal/ubuntu zesty/main arm64 libhx509-5-heimdal arm64 7.1.0+dfsg-9ubuntu1 [86.4 kB] Get:91 http://ftpmaster.internal/ubuntu zesty/main arm64 libsqlite3-0 arm64 3.16.2-3 [408 kB] Get:92 http://ftpmaster.internal/ubuntu zesty/main arm64 libkrb5-26-heimdal arm64 7.1.0+dfsg-9ubuntu1 [166 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main arm64 libheimntlm0-heimdal arm64 7.1.0+dfsg-9ubuntu1 [13.3 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main arm64 libgssapi3-heimdal arm64 7.1.0+dfsg-9ubuntu1 [77.1 kB] Get:95 http://ftpmaster.internal/ubuntu zesty/main arm64 libksba8 arm64 1.3.5-2 [77.4 kB] Get:96 http://ftpmaster.internal/ubuntu zesty/main arm64 libsasl2-modules-db arm64 2.1.27~72-g88d82a3+dfsg-1 [13.6 kB] Get:97 http://ftpmaster.internal/ubuntu zesty/main arm64 libsasl2-2 arm64 2.1.27~72-g88d82a3+dfsg-1 [41.6 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/main arm64 libldap-common all 2.4.44+dfsg-3ubuntu2 [16.8 kB] Get:99 http://ftpmaster.internal/ubuntu zesty/main arm64 libldap-2.4-2 arm64 2.4.44+dfsg-3ubuntu2 [128 kB] Get:100 http://ftpmaster.internal/ubuntu zesty/main arm64 libnpth0 arm64 1.3-1 [7234 B] Get:101 http://ftpmaster.internal/ubuntu zesty/main arm64 libslang2 arm64 2.3.1-5ubuntu1 [368 kB] Get:102 http://ftpmaster.internal/ubuntu zesty/main arm64 libssl1.0.0 arm64 1.0.2g-1ubuntu11 [703 kB] Get:103 http://ftpmaster.internal/ubuntu zesty/main arm64 pinentry-curses arm64 1.0.0-2 [29.6 kB] Get:104 http://ftpmaster.internal/ubuntu zesty/main arm64 xz-utils arm64 5.2.2-1.2 [79.1 kB] Get:105 http://ftpmaster.internal/ubuntu zesty/main arm64 libgssapi-krb5-2 arm64 1.15-1 [97.6 kB] Get:106 http://ftpmaster.internal/ubuntu zesty/main arm64 libkrb5-3 arm64 1.15-1 [233 kB] Get:107 http://ftpmaster.internal/ubuntu zesty/main arm64 libkrb5support0 arm64 1.15-1 [28.8 kB] Get:108 http://ftpmaster.internal/ubuntu zesty/main arm64 libk5crypto3 arm64 1.15-1 [76.3 kB] Get:109 http://ftpmaster.internal/ubuntu zesty/universe arm64 libidn2-0 arm64 0.16-1 [45.8 kB] Get:110 http://ftpmaster.internal/ubuntu zesty/universe arm64 libpsl5 arm64 0.17.0-4 [38.6 kB] Get:111 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libcurl3-gnutls arm64 7.52.1-3ubuntu1 [160 kB] Get:112 http://ftpmaster.internal/ubuntu zesty/main arm64 apt-transport-https arm64 1.4~rc2 [31.3 kB] Get:113 http://ftpmaster.internal/ubuntu zesty/main arm64 openssl arm64 1.0.2g-1ubuntu11 [471 kB] Get:114 http://ftpmaster.internal/ubuntu zesty/main arm64 ca-certificates all 20161130 [193 kB] Get:115 http://ftpmaster.internal/ubuntu zesty/main arm64 libpng16-16 arm64 1.6.28-1 [158 kB] Get:116 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 advancecomp arm64 1.23-1 [169 kB] Get:117 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 cpp arm64 4:6.3.0-1ubuntu3 [27.5 kB] Get:118 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 gcc arm64 4:6.3.0-1ubuntu3 [5184 B] Get:119 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 g++ arm64 4:6.3.0-1ubuntu3 [1460 B] Get:120 http://ftpmaster.internal/ubuntu zesty/main arm64 make arm64 4.1-9.1 [137 kB] Get:121 http://ftpmaster.internal/ubuntu zesty/main arm64 pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 51.5 MB in 2s (25.5 MB/s) (Reading database ... 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Unpacking libstdc++6:arm64 (6.3.0-9ubuntu1) over (6.2.0-5ubuntu12) ... Setting up libstdc++6:arm64 (6.3.0-9ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14014 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-0ubuntu1_arm64.deb ... Unpacking zlib1g:arm64 (1:1.2.11.dfsg-0ubuntu1) over (1:1.2.8.dfsg-2ubuntu5) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-0ubuntu1) ... (Reading database ... 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Setting up libc6:arm64 (2.24-7ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14014 files and directories currently installed.) Preparing to unpack .../0-bzip2_1.0.6-8.1_arm64.deb ... Unpacking bzip2 (1.0.6-8.1) over (1.0.6-8build1) ... Preparing to unpack .../1-libbz2-1.0_1.0.6-8.1_arm64.deb ... Unpacking libbz2-1.0:arm64 (1.0.6-8.1) over (1.0.6-8build1) ... Setting up libbz2-1.0:arm64 (1.0.6-8.1) ... (Reading database ... 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Created symlink /etc/systemd/system/timers.target.wants/motd-news.timer -> /lib/systemd/system/motd-news.timer. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14018 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.1_arm64.deb ... Unpacking debianutils (4.8.1) over (4.8) ... Setting up debianutils (4.8.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14015 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1_arm64.deb ... Unpacking tar (1.29b-1.1) over (1.29b-1) ... Setting up tar (1.29b-1.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14015 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4~rc2_arm64.deb ... Unpacking libapt-pkg5.0:arm64 (1.4~rc2) over (1.3.1) ... Setting up libapt-pkg5.0:arm64 (1.4~rc2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14015 files and directories currently installed.) Preparing to unpack .../adduser_3.113+nmu3ubuntu5_all.deb ... Unpacking adduser (3.113+nmu3ubuntu5) over (3.113+nmu3ubuntu4) ... Setting up adduser (3.113+nmu3ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14015 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.10.27_all.deb ... Unpacking ubuntu-keyring (2016.10.27) over (2016.09.19) ... Setting up ubuntu-keyring (2016.10.27) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14013 files and directories currently installed.) Preparing to unpack .../archives/apt_1.4~rc2_arm64.deb ... Unpacking apt (1.4~rc2) over (1.3.1) ... Setting up apt (1.4~rc2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14022 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.11.0-2ubuntu2_arm64.deb ... Unpacking libapparmor1:arm64 (2.11.0-2ubuntu2) over (2.10.95-4ubuntu5) ... Preparing to unpack .../1-libgpg-error0_1.26-2_arm64.deb ... Unpacking libgpg-error0:arm64 (1.26-2) over (1.24-1) ... Setting up libgpg-error0:arm64 (1.26-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14022 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.6-1_arm64.deb ... Unpacking libgcrypt20:arm64 (1.7.6-1) over (1.7.2-2ubuntu1) ... Setting up libgcrypt20:arm64 (1.7.6-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14022 files and directories currently installed.) Preparing to unpack .../0-libseccomp2_2.3.1-2.1ubuntu1_arm64.deb ... Unpacking libseccomp2:arm64 (2.3.1-2.1ubuntu1) over (2.3.1-2ubuntu2) ... Preparing to unpack .../1-systemd_232-19_arm64.deb ... Unpacking systemd (232-19) over (231-9git1) ... Preparing to unpack .../2-libsystemd0_232-19_arm64.deb ... Unpacking libsystemd0:arm64 (232-19) over (231-9git1) ... Setting up libsystemd0:arm64 (232-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14022 files and directories currently installed.) Preparing to unpack .../archives/init_1.47_arm64.deb ... Unpacking init (1.47) over (1.45) ... Setting up libapparmor1:arm64 (2.11.0-2ubuntu2) ... Setting up libseccomp2:arm64 (2.3.1-2.1ubuntu1) ... Setting up systemd (232-19) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14022 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_232-19_arm64.deb ... Unpacking systemd-sysv (232-19) over (231-9git1) ... Preparing to unpack .../1-liblockfile-bin_1.14-1_arm64.deb ... Unpacking liblockfile-bin (1.14-1) over (1.09-6ubuntu1) ... Preparing to unpack .../2-liblockfile1_1.14-1_arm64.deb ... Unpacking liblockfile1:arm64 (1.14-1) over (1.09-6ubuntu1) ... Selecting previously unselected package libunistring0:arm64. Preparing to unpack .../3-libunistring0_0.9.3-5.2ubuntu1_arm64.deb ... Unpacking libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Preparing to unpack .../4-libcomerr2_1.43.4-2_arm64.deb ... Unpacking libcomerr2:arm64 (1.43.4-2) over (1.43.3-1) ... Setting up libcomerr2:arm64 (1.43.4-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14032 files and directories currently installed.) Preparing to unpack .../libudev1_232-19_arm64.deb ... Unpacking libudev1:arm64 (232-19) over (231-9git1) ... Setting up libudev1:arm64 (232-19) ... (Reading database ... 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Selecting previously unselected package libldap-common. Preparing to unpack .../22-libldap-common_2.4.44+dfsg-3ubuntu2_all.deb ... Unpacking libldap-common (2.4.44+dfsg-3ubuntu2) ... Replacing files in old package libldap-2.4-2:arm64 (2.4.42+dfsg-2ubuntu4) ... Preparing to unpack .../23-libldap-2.4-2_2.4.44+dfsg-3ubuntu2_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.44+dfsg-3ubuntu2) over (2.4.42+dfsg-2ubuntu4) ... Preparing to unpack .../24-libnpth0_1.3-1_arm64.deb ... Unpacking libnpth0:arm64 (1.3-1) over (1.2-3) ... Preparing to unpack .../25-libslang2_2.3.1-5ubuntu1_arm64.deb ... Unpacking libslang2:arm64 (2.3.1-5ubuntu1) over (2.3.0-2.3ubuntu1) ... Preparing to unpack .../26-libssl1.0.0_1.0.2g-1ubuntu11_arm64.deb ... Unpacking libssl1.0.0:arm64 (1.0.2g-1ubuntu11) over (1.0.2g-1ubuntu9) ... Preparing to unpack .../27-pinentry-curses_1.0.0-2_arm64.deb ... Unpacking pinentry-curses (1.0.0-2) over (0.9.7-5) ... Preparing to unpack .../28-xz-utils_5.2.2-1.2_arm64.deb ... 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Unpacking libcurl3-gnutls:arm64 (7.52.1-3ubuntu1) over (7.50.1-1ubuntu1) ... Preparing to unpack .../36-apt-transport-https_1.4~rc2_arm64.deb ... Unpacking apt-transport-https (1.4~rc2) over (1.3.1) ... Preparing to unpack .../37-openssl_1.0.2g-1ubuntu11_arm64.deb ... Unpacking openssl (1.0.2g-1ubuntu11) over (1.0.2g-1ubuntu9) ... Preparing to unpack .../38-ca-certificates_20161130_all.deb ... Unpacking ca-certificates (20161130) over (20160104ubuntu1) ... Preparing to unpack .../39-libpng16-16_1.6.28-1_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.28-1) over (1.6.25-1) ... Preparing to unpack .../40-advancecomp_1.23-1_arm64.deb ... Unpacking advancecomp (1.23-1) over (1.20-1) ... Preparing to unpack .../41-cpp_4%3a6.3.0-1ubuntu3_arm64.deb ... Unpacking cpp (4:6.3.0-1ubuntu3) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../42-gcc_4%3a6.3.0-1ubuntu3_arm64.deb ... Removing old gcc doc directory. Unpacking gcc (4:6.3.0-1ubuntu3) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../43-g++_4%3a6.3.0-1ubuntu3_arm64.deb ... Unpacking g++ (4:6.3.0-1ubuntu3) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../44-make_4.1-9.1_arm64.deb ... Unpacking make (4.1-9.1) over (4.1-9) ... Preparing to unpack .../45-pkg-create-dbgsym_0.73_all.deb ... Unpacking pkg-create-dbgsym (0.73) over (0.72) ... Setting up libnpth0:arm64 (1.3-1) ... Setting up libgomp1:arm64 (6.3.0-9ubuntu1) ... Setting up libatomic1:arm64 (6.3.0-9ubuntu1) ... Setting up perl-modules-5.24 (5.24.1-1) ... Setting up libperl5.24:arm64 (5.24.1-1) ... Setting up libnettle6:arm64 (3.3-1) ... Setting up liblockfile-bin (1.14-1) ... Setting up libcc1-0:arm64 (6.3.0-9ubuntu1) ... Setting up make (4.1-9.1) ... Setting up libasan3:arm64 (6.3.0-9ubuntu1) ... Setting up libssl1.0.0:arm64 (1.0.2g-1ubuntu11) ... Setting up libpng16-16:arm64 (1.6.28-1) ... Setting up libldap-common (2.4.44+dfsg-3ubuntu2) ... Setting up tzdata (2017a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 17 12:44:32 UTC 2017. Universal Time is now: Fri Mar 17 12:44:32 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (232-19) ... Setting up libubsan0:arm64 (6.3.0-9ubuntu1) ... Setting up liblockfile1:arm64 (1.14-1) ... Setting up libsasl2-modules-db:arm64 (2.1.27~72-g88d82a3+dfsg-1) ... Setting up linux-libc-dev:arm64 (4.10.0-13.15) ... Setting up advancecomp (1.23-1) ... Setting up libsasl2-2:arm64 (2.1.27~72-g88d82a3+dfsg-1) ... Setting up libroken18-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up libksba8:arm64 (1.3.5-2) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.136-1ubuntu2) ... Setting up libkrb5support0:arm64 (1.15-1) ... Setting up libtasn1-6:arm64 (4.10-1) ... Setting up bzip2 (1.0.6-8.1) ... Setting up perl (5.24.1-1) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up libgmp10:arm64 (2:6.1.2+dfsg-1) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up pkg-create-dbgsym (0.73) ... Setting up libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up libp11-kit0:arm64 (0.23.3-5) ... Setting up openssl (1.0.2g-1ubuntu11) ... Setting up libsqlite3-0:arm64 (3.16.2-3) ... Setting up dmsetup (2:1.02.136-1ubuntu2) ... Setting up binutils (2.28-2ubuntu1) ... Setting up libc-dev-bin (2.24-7ubuntu2) ... Setting up ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 10 added, 10 removed; done. Setting up libc6-dev:arm64 (2.24-7ubuntu2) ... Setting up libslang2:arm64 (2.3.1-5ubuntu1) ... Setting up libassuan0:arm64 (2.4.3-2) ... Setting up libitm1:arm64 (6.3.0-9ubuntu1) ... Setting up libk5crypto3:arm64 (1.15-1) ... Setting up libgcc-6-dev:arm64 (6.3.0-9ubuntu1) ... Setting up libidn2-0:arm64 (0.16-1) ... Setting up libstdc++-6-dev:arm64 (6.3.0-9ubuntu1) ... Setting up libwind0-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up libpsl5:arm64 (0.17.0-4) ... Setting up init (1.47) ... Setting up libasn1-8-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up libhcrypto4-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up libhx509-5-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up libhogweed4:arm64 (3.3-1) ... Setting up libisl15:arm64 (0.18-1) ... Setting up pinentry-curses (1.0.0-2) ... Setting up libkrb5-3:arm64 (1.15-1) ... Setting up cpp-6 (6.3.0-9ubuntu1) ... Setting up libkrb5-26-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up libheimntlm0-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up cpp (4:6.3.0-1ubuntu3) ... Setting up libgnutls30:arm64 (3.5.6-4ubuntu3) ... Setting up gcc-6 (6.3.0-9ubuntu1) ... Setting up libgssapi-krb5-2:arm64 (1.15-1) ... Setting up g++-6 (6.3.0-9ubuntu1) ... Setting up libgssapi3-heimdal:arm64 (7.1.0+dfsg-9ubuntu1) ... Setting up gcc (4:6.3.0-1ubuntu3) ... Setting up libldap-2.4-2:arm64 (2.4.44+dfsg-3ubuntu2) ... Setting up g++ (4:6.3.0-1ubuntu3) ... Setting up libcurl3-gnutls:arm64 (7.52.1-3ubuntu1) ... Setting up apt-transport-https (1.4~rc2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11160516', 'arm64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=zesty-proposed', '--purge=never', '--nolog', 'rdkit_201603.5-2.dsc'] Initiating build PACKAGEBUILD-11160516 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-66-generic #87+buildd1-Ubuntu SMP Thu Mar 9 01:49:33 UTC 2017 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-034.buildd +==============================================================================+ | rdkit 201603.5-2 (arm64) 17 Mar 2017 12:44 | +==============================================================================+ Package: rdkit Version: 201603.5-2 Source Version: 201603.5-2 Distribution: zesty-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/rdkit-3vswTj/rdkit-201603.5' with '<>' I: NOTICE: Log filtering will replace 'build/rdkit-3vswTj' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11160516/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- rdkit_201603.5-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-JXjJf1/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-JXjJf1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JXjJf1/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-JXjJf1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JXjJf1/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-JXjJf1/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (39.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-JXjJf1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, pandoc, python-dev, python-epydoc, python-imaging, python-numpy, python-pandas, python-sphinx, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended Filtered Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, pandoc, python-dev, python-epydoc, python-imaging, python-numpy, python-pandas, python-sphinx, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended dpkg-deb: building package 'sbuild-build-depends-rdkit-dummy' in '/<>/resolver-Y7wg40/apt_archive/sbuild-build-depends-rdkit-dummy.deb'. Ign:1 copy:/<>/resolver-Y7wg40/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Y7wg40/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Y7wg40/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Y7wg40/apt_archive ./ Sources [347 B] Get:5 copy:/<>/resolver-Y7wg40/apt_archive ./ Packages [673 B] Fetched 3139 B in 0s (107 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install rdkit build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common doxygen file flex fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas-common libblas3 libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost1.62-dev libbsd0 libcairo2 libclang1-4.0 libcroco3 libcups2 libcupsimage2 libcurl3 libdbus-1-3 libedit2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp1 libkpathsea6 liblapack3 liblcms2-2 libllvm4.0 liblua5.1-0 liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libnspr4 libnss3 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler64 libpotrace0 libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libsm6 libsqlite3-dev libsynctex1 libtexlua52 libtiff5 libtimedate-perl libtool libuv1 libwebp6 libwebpmux2 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-0-2 libzzip-0-13 m4 man-db mime-support pandoc pandoc-data po-debconf poppler-data preview-latex-style python python-alabaster python-babel python-babel-localedata python-chardet python-dateutil python-dev python-docutils python-epydoc python-imagesize python-imaging python-jinja2 python-markupsafe python-minimal python-numpy python-pandas python-pandas-lib python-pil python-pkg-resources python-pygments python-requests python-roman python-six python-sphinx python-tz python-urllib3 python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal sgml-base sphinx-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-generic-extra texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.62-doc gccxml libboost-context1.62-dev libboost-coroutine1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-random1.62-dev libboost-signals1.62-dev libboost-test1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev cups-common icu-doc liblcms2-utils sqlite3-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc less www-browser texlive-xetex texlive-luatex pandoc-citeproc wkhtmltopdf libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french epydoc-doc python-jinja2-doc gfortran python-nose python-numpy-dbg python-numpy-doc python-pandas-doc python-pil-doc python-pil-dbg python-setuptools ttf-bitstream-vera python-cryptography python-idna python-openssl python-socks python-sphinx-rtd-theme libjs-mathjax dvipng sphinx-doc python-ntlm python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc sgml-base-doc gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer libfile-which-perl libspreadsheet-parseexcel-perl texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby gvfs-bin Recommended packages: libfl-dev curl | wget | lynx-cur libcupsfilters1 dbus libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common libltdl-dev libmail-sendmail-perl docutils-doc python-tk graphviz python-scipy python-matplotlib python-tables python-numexpr python-xlrd python-statsmodels python-openpyxl python-xlwt python-bs4 python-html5lib python-lxml python-enum34 python-cryptography python-idna python-ipaddress python-openssl lmodern ruby wish tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc prosper texlive-latex-recommended-doc ruby | ruby-interpreter texlive-pictures-doc tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common doxygen file flex fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas-common libblas3 libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost1.62-dev libbsd0 libcairo2 libclang1-4.0 libcroco3 libcups2 libcupsimage2 libcurl3 libdbus-1-3 libedit2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp1 libkpathsea6 liblapack3 liblcms2-2 libllvm4.0 liblua5.1-0 liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libnspr4 libnss3 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler64 libpotrace0 libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libsm6 libsqlite3-dev libsynctex1 libtexlua52 libtiff5 libtimedate-perl libtool libuv1 libwebp6 libwebpmux2 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-0-2 libzzip-0-13 m4 man-db mime-support pandoc pandoc-data po-debconf poppler-data preview-latex-style python python-alabaster python-babel python-babel-localedata python-chardet python-dateutil python-dev python-docutils python-epydoc python-imagesize python-imaging python-jinja2 python-markupsafe python-minimal python-numpy python-pandas python-pandas-lib python-pil python-pkg-resources python-pygments python-requests python-roman python-six python-sphinx python-tz python-urllib3 python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal sbuild-build-depends-rdkit-dummy sgml-base sphinx-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-generic-extra texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils xml-core 0 upgraded, 206 newly installed, 0 to remove and 0 not upgraded. Need to get 220 MB of archives. After this operation, 996 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Y7wg40/apt_archive ./ sbuild-build-depends-rdkit-dummy 0.invalid.0 [914 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython3.5-minimal arm64 3.5.3-1 [521 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main arm64 libexpat1 arm64 2.2.0-2 [59.3 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main arm64 python3.5-minimal arm64 3.5.3-1 [1166 kB] Get:5 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 python3-minimal arm64 3.5.3-1 [23.4 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main arm64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main arm64 libmpdec2 arm64 2.4.2-1 [74.3 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython3.5-stdlib arm64 3.5.3-1 [2029 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main arm64 python3.5 arm64 3.5.3-1 [175 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libpython3-stdlib arm64 3.5.3-1 [6838 B] Get:11 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bsdmainutils arm64 9.0.12ubuntu1 [170 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main arm64 libpipeline1 arm64 1.4.1-2 [21.9 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main arm64 man-db arm64 2.7.6.1-2 [871 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main arm64 sgml-base all 1.29 [12.3 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main arm64 cmake-data all 3.7.2-1 [1199 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main arm64 liblzo2-2 arm64 2.08-1.2 [42.2 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main arm64 libicu57 arm64 57.1-5 [7523 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main arm64 libxml2 arm64 2.9.4+dfsg1-2.2 [568 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main arm64 libarchive13 arm64 3.2.1-6 [241 kB] Get:30 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libcurl3 arm64 7.52.1-3ubuntu1 [161 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main arm64 libjsoncpp1 arm64 1.7.4-3 [69.2 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main arm64 libuv1 arm64 1.9.1-3 [47.9 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main arm64 cmake arm64 3.7.2-1 [2688 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main arm64 libsigsegv2 arm64 2.10-5 [13.3 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main arm64 flex arm64 2.6.1-1.3 [283 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main arm64 x11-common all 1:7.7+16ubuntu2 [21.9 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main arm64 libice6 arm64 2:1.0.9-1 [32.8 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main arm64 libjpeg-turbo8 arm64 1.5.1-0ubuntu1 [90.0 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main arm64 libsm6 arm64 2:1.2.2-1 [13.7 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main arm64 libzzip-0-13 arm64 0.13.62-3 [22.5 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main arm64 poppler-data all 0.4.7-8 [1449 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython2.7-minimal arm64 2.7.13-2 [338 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main arm64 python2.7-minimal arm64 2.7.13-2 [1130 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main arm64 python-minimal arm64 2.7.13-2 [28.2 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython2.7-stdlib arm64 2.7.13-2 [1833 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main arm64 python2.7 arm64 2.7.13-2 [229 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython-stdlib arm64 2.7.13-2 [7774 B] Get:49 http://ftpmaster.internal/ubuntu zesty/main arm64 python arm64 2.7.13-2 [139 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main arm64 libjbig0 arm64 2.1-3.1 [23.8 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main arm64 libmagic-mgc arm64 1:5.29-3 [181 kB] Get:52 http://ftpmaster.internal/ubuntu zesty/main arm64 libmagic1 arm64 1:5.29-3 [60.2 kB] Get:53 http://ftpmaster.internal/ubuntu zesty/main arm64 file arm64 1:5.29-3 [21.6 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main arm64 libdbus-1-3 arm64 1.10.10-1ubuntu2 [138 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main arm64 ucf all 3.0036 [52.9 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main arm64 gettext-base arm64 0.19.8.1-1ubuntu2 [45.4 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main arm64 libedit2 arm64 3.1-20160903-3 [63.5 kB] Get:58 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libglib2.0-0 arm64 2.51.5-1 [954 kB] Get:59 http://ftpmaster.internal/ubuntu zesty/main arm64 libyaml-0-2 arm64 0.1.7-2 [40.2 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main arm64 xml-core all 0.17 [21.6 kB] Get:61 http://ftpmaster.internal/ubuntu zesty/main arm64 autoconf all 2.69-10 [321 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main arm64 autotools-dev all 20161112.1 [39.5 kB] Get:63 http://ftpmaster.internal/ubuntu zesty/main arm64 automake all 1:1.15-5ubuntu1 [509 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main arm64 autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main arm64 libbison-dev arm64 2:3.0.4.dfsg-1 [339 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main arm64 bison arm64 2:3.0.4.dfsg-1 [231 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main arm64 libtool all 2.4.6-2 [194 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-autoreconf all 13 [15.6 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main arm64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main arm64 libfile-stripnondeterminism-perl all 0.031-1 [12.8 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-strip-nondeterminism all 0.031-1 [4884 B] Get:73 http://ftpmaster.internal/ubuntu zesty/main arm64 libcroco3 arm64 0.6.11-2 [66.0 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main arm64 gettext arm64 0.19.8.1-1ubuntu2 [1012 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main arm64 po-debconf all 1.0.20 [232 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main arm64 debhelper all 10.2.2ubuntu1 [742 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main arm64 docutils-common all 0.13.1+dfsg-2 [154 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main arm64 libllvm4.0 arm64 1:4.0-1ubuntu1 [10.3 MB] Get:80 http://ftpmaster.internal/ubuntu zesty/main arm64 libclang1-4.0 arm64 1:4.0-1ubuntu1 [5340 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main arm64 libxapian30 arm64 1.4.3-1 [574 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main arm64 doxygen arm64 1.8.13-4ubuntu2 [3502 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main arm64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main arm64 fontconfig-config all 2.11.94-0ubuntu2 [49.9 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main arm64 fonts-lmodern all 2.004.5-3 [4551 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main arm64 icu-devtools arm64 57.1-5 [158 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main arm64 libavahi-common-data arm64 0.6.32-1ubuntu1 [22.0 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main arm64 libavahi-common3 arm64 0.6.32-1ubuntu1 [17.9 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main arm64 libavahi-client3 arm64 0.6.32-1ubuntu1 [21.0 kB] Get:90 http://ftpmaster.internal/ubuntu zesty/main arm64 libblas-common arm64 3.7.0-1 [5696 B] Get:91 http://ftpmaster.internal/ubuntu zesty/main arm64 libblas3 arm64 3.7.0-1 [84.9 kB] Get:92 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost1.62-dev arm64 1.62.0+dfsg-4 [6986 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-atomic1.62.0 arm64 1.62.0+dfsg-4 [7440 B] Get:94 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-atomic1.62-dev arm64 1.62.0+dfsg-4 [5086 B] Get:95 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-system1.62.0 arm64 1.62.0+dfsg-4 [9478 B] Get:96 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-chrono1.62.0 arm64 1.62.0+dfsg-4 [11.6 kB] Get:97 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-chrono1.62-dev arm64 1.62.0+dfsg-4 [12.5 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-date-time1.62.0 arm64 1.62.0+dfsg-4 [19.4 kB] Get:99 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-serialization1.62.0 arm64 1.62.0+dfsg-4 [93.1 kB] Get:100 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-serialization1.62-dev arm64 1.62.0+dfsg-4 [136 kB] Get:101 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-date-time1.62-dev arm64 1.62.0+dfsg-4 [26.1 kB] Get:102 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-dev arm64 1.62.0.1 [3074 B] Get:103 http://ftpmaster.internal/ubuntu zesty/universe arm64 libboost-python1.62.0 arm64 1.62.0+dfsg-4 [104 kB] Get:104 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython2.7 arm64 2.7.13-2 [905 kB] Get:105 http://ftpmaster.internal/ubuntu zesty/main arm64 libexpat1-dev arm64 2.2.0-2 [104 kB] Get:106 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython2.7-dev arm64 2.7.13-2 [27.9 MB] Get:107 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython-dev arm64 2.7.13-2 [7842 B] Get:108 http://ftpmaster.internal/ubuntu zesty/main arm64 python2.7-dev arm64 2.7.13-2 [277 kB] Get:109 http://ftpmaster.internal/ubuntu zesty/main arm64 python-dev arm64 2.7.13-2 [1160 B] Get:110 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython3.5 arm64 3.5.3-1 [1168 kB] Get:111 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython3.5-dev arm64 3.5.3-1 [2062 kB] Get:112 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libpython3-dev arm64 3.5.3-1 [6928 B] Get:113 http://ftpmaster.internal/ubuntu zesty/main arm64 python3.5-dev arm64 3.5.3-1 [413 kB] Get:114 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 python3-dev arm64 3.5.3-1 [1190 B] Get:115 http://ftpmaster.internal/ubuntu zesty/universe arm64 libboost-python1.62-dev arm64 1.62.0+dfsg-4 [141 kB] Get:116 http://ftpmaster.internal/ubuntu zesty/universe arm64 libboost-python-dev arm64 1.62.0.1 [3252 B] Get:117 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-regex1.62.0 arm64 1.62.0+dfsg-4 [232 kB] Get:118 http://ftpmaster.internal/ubuntu zesty/main arm64 libicu-dev arm64 57.1-5 [16.2 MB] Get:119 http://ftpmaster.internal/ubuntu zesty/universe arm64 libboost-regex1.62-dev arm64 1.62.0+dfsg-4 [285 kB] Get:120 http://ftpmaster.internal/ubuntu zesty/universe arm64 libboost-regex-dev arm64 1.62.0.1 [3120 B] Get:121 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-system1.62-dev arm64 1.62.0+dfsg-4 [9232 B] Get:122 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-system-dev arm64 1.62.0.1 [3006 B] Get:123 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-thread1.62.0 arm64 1.62.0+dfsg-4 [43.6 kB] Get:124 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-thread1.62-dev arm64 1.62.0+dfsg-4 [46.3 kB] Get:125 http://ftpmaster.internal/ubuntu zesty/main arm64 libboost-thread-dev arm64 1.62.0.1 [2882 B] Get:126 http://ftpmaster.internal/ubuntu zesty/main arm64 libfreetype6 arm64 2.6.3-3ubuntu2 [271 kB] Get:127 http://ftpmaster.internal/ubuntu zesty/main arm64 libfontconfig1 arm64 2.11.94-0ubuntu2 [117 kB] Get:128 http://ftpmaster.internal/ubuntu zesty/main arm64 libpixman-1-0 arm64 0.34.0-1 [113 kB] Get:129 http://ftpmaster.internal/ubuntu zesty/main arm64 libxcb-render0 arm64 1.11.1-1ubuntu1 [10.0 kB] Get:130 http://ftpmaster.internal/ubuntu zesty/main arm64 libxcb-shm0 arm64 1.11.1-1ubuntu1 [5246 B] Get:131 http://ftpmaster.internal/ubuntu zesty/main arm64 libxrender1 arm64 1:0.9.10-1 [16.1 kB] Get:132 http://ftpmaster.internal/ubuntu zesty/main arm64 libcairo2 arm64 1.14.8-1 [461 kB] Get:133 http://ftpmaster.internal/ubuntu zesty/main arm64 libcups2 arm64 2.2.2-1 [171 kB] Get:134 http://ftpmaster.internal/ubuntu zesty/main arm64 libcupsimage2 arm64 2.2.2-1 [16.3 kB] Get:135 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgfortran3 arm64 6.3.0-9ubuntu1 [200 kB] Get:136 http://ftpmaster.internal/ubuntu zesty/main arm64 libgraphite2-3 arm64 1.3.9-3 [56.9 kB] Get:137 http://ftpmaster.internal/ubuntu zesty/main arm64 libijs-0.35 arm64 0.35-12 [14.1 kB] Get:138 http://ftpmaster.internal/ubuntu zesty/main arm64 libjbig2dec0 arm64 0.13-4 [48.7 kB] Get:139 http://ftpmaster.internal/ubuntu zesty/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:140 http://ftpmaster.internal/ubuntu zesty/main arm64 liblcms2-2 arm64 2.7-1ubuntu1 [110 kB] Get:141 http://ftpmaster.internal/ubuntu zesty/main arm64 libpaper1 arm64 1.1.24+nmu4ubuntu1 [13.1 kB] Get:142 http://ftpmaster.internal/ubuntu zesty/main arm64 libtiff5 arm64 4.0.7-5 [124 kB] Get:143 http://ftpmaster.internal/ubuntu zesty/main arm64 libgs9-common all 9.19~dfsg+1-0ubuntu7.1 [2989 kB] Get:144 http://ftpmaster.internal/ubuntu zesty/main arm64 libgs9 arm64 9.19~dfsg+1-0ubuntu7.1 [1771 kB] Get:145 http://ftpmaster.internal/ubuntu zesty/main arm64 libharfbuzz0b arm64 1.4.2-1 [184 kB] Get:146 http://ftpmaster.internal/ubuntu zesty/main arm64 libharfbuzz-icu0 arm64 1.4.2-1 [4994 B] Get:147 http://ftpmaster.internal/ubuntu zesty/main arm64 libjs-jquery all 3.1.1-2 [151 kB] Get:148 http://ftpmaster.internal/ubuntu zesty/main arm64 libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:149 http://ftpmaster.internal/ubuntu zesty/main arm64 libjs-sphinxdoc all 1.5.3-1 [77.3 kB] Get:150 http://ftpmaster.internal/ubuntu zesty/main arm64 libkpathsea6 arm64 2016.20160513.41080.dfsg-1 [48.7 kB] Get:151 http://ftpmaster.internal/ubuntu zesty/main arm64 liblapack3 arm64 3.7.0-1 [1362 kB] Get:152 http://ftpmaster.internal/ubuntu zesty/universe arm64 liblua5.1-0 arm64 5.1.5-8.1build1 [91.1 kB] Get:153 http://ftpmaster.internal/ubuntu zesty/main arm64 libnspr4 arm64 2:4.12-6ubuntu1 [91.9 kB] Get:154 http://ftpmaster.internal/ubuntu zesty/main arm64 libnss3 arm64 2:3.26.2-1ubuntu1 [952 kB] Get:155 http://ftpmaster.internal/ubuntu zesty/main arm64 libpaper-utils arm64 1.1.24+nmu4ubuntu1 [8134 B] Get:156 http://ftpmaster.internal/ubuntu zesty/main arm64 libpoppler64 arm64 0.48.0-2ubuntu2 [658 kB] Get:157 http://ftpmaster.internal/ubuntu zesty/main arm64 libpotrace0 arm64 1.13-3 [14.3 kB] Get:158 http://ftpmaster.internal/ubuntu zesty/main arm64 libptexenc1 arm64 2016.20160513.41080.dfsg-1 [32.8 kB] Get:159 http://ftpmaster.internal/ubuntu zesty/main arm64 libsqlite3-dev arm64 3.16.2-3 [542 kB] Get:160 http://ftpmaster.internal/ubuntu zesty/main arm64 libsynctex1 arm64 2016.20160513.41080.dfsg-1 [37.6 kB] Get:161 http://ftpmaster.internal/ubuntu zesty/main arm64 libtexlua52 arm64 2016.20160513.41080.dfsg-1 [75.4 kB] Get:162 http://ftpmaster.internal/ubuntu zesty/main arm64 libwebp6 arm64 0.5.2-1 [156 kB] Get:163 http://ftpmaster.internal/ubuntu zesty/main arm64 libwebpmux2 arm64 0.5.2-1 [17.2 kB] Get:164 http://ftpmaster.internal/ubuntu zesty/main arm64 libxt6 arm64 1:1.1.5-1 [128 kB] Get:165 http://ftpmaster.internal/ubuntu zesty/main arm64 libxmu6 arm64 2:1.1.2-2 [38.8 kB] Get:166 http://ftpmaster.internal/ubuntu zesty/main arm64 libxpm4 arm64 1:3.5.12-1 [28.8 kB] Get:167 http://ftpmaster.internal/ubuntu zesty/main arm64 libxaw7 arm64 2:1.0.13-1 [137 kB] Get:168 http://ftpmaster.internal/ubuntu zesty/main arm64 libxi6 arm64 2:1.7.9-1 [25.4 kB] Get:169 http://ftpmaster.internal/ubuntu zesty/universe arm64 pandoc-data all 1.17.2~dfsg-3build1 [84.4 kB] Get:170 http://ftpmaster.internal/ubuntu zesty/universe arm64 pandoc arm64 1.17.2~dfsg-3build1 [11.3 MB] Get:171 http://ftpmaster.internal/ubuntu zesty/main arm64 tex-common all 6.06 [545 kB] Get:172 http://ftpmaster.internal/ubuntu zesty/main arm64 preview-latex-style all 11.90-1ubuntu1 [184 kB] Get:173 http://ftpmaster.internal/ubuntu zesty/main arm64 python-babel-localedata all 2.3.4+dfsg.1-2 [3401 kB] Get:174 http://ftpmaster.internal/ubuntu zesty/main arm64 python-pkg-resources all 33.1.1-1 [127 kB] Get:175 http://ftpmaster.internal/ubuntu zesty/main arm64 python-tz all 2014.10~dfsg1-0ubuntu2 [31.5 kB] Get:176 http://ftpmaster.internal/ubuntu zesty/main arm64 python-babel all 2.3.4+dfsg.1-2 [78.9 kB] Get:177 http://ftpmaster.internal/ubuntu zesty/main arm64 python-chardet all 2.3.0-2 [96.3 kB] Get:178 http://ftpmaster.internal/ubuntu zesty/main arm64 python-six all 1.10.0-3 [10.9 kB] Get:179 http://ftpmaster.internal/ubuntu zesty/main arm64 python-dateutil all 2.5.3-2 [51.1 kB] Get:180 http://ftpmaster.internal/ubuntu zesty/main arm64 python-roman all 2.0.0-2 [8062 B] Get:181 http://ftpmaster.internal/ubuntu zesty/main arm64 python-docutils all 0.13.1+dfsg-2 [359 kB] Get:182 http://ftpmaster.internal/ubuntu zesty/universe arm64 python-epydoc all 3.0.1+dfsg-14 [215 kB] Get:183 http://ftpmaster.internal/ubuntu zesty/universe arm64 python-imagesize all 0.7.1-1 [3854 B] Get:184 http://ftpmaster.internal/ubuntu zesty/main arm64 python-pil arm64 4.0.0-4 [304 kB] Get:185 http://ftpmaster.internal/ubuntu zesty/universe arm64 python-imaging all 4.0.0-4 [4136 B] Get:186 http://ftpmaster.internal/ubuntu zesty/main arm64 python-markupsafe arm64 0.23-3 [14.1 kB] Get:187 http://ftpmaster.internal/ubuntu zesty/main arm64 python-jinja2 all 2.9.5-1 [107 kB] Get:188 http://ftpmaster.internal/ubuntu zesty/main arm64 python-numpy arm64 1:1.12.0-2ubuntu1 [1684 kB] Get:189 http://ftpmaster.internal/ubuntu zesty/universe arm64 python-pandas-lib arm64 0.19.2-5ubuntu1 [1668 kB] Get:190 http://ftpmaster.internal/ubuntu zesty/universe arm64 python-pandas all 0.19.2-5ubuntu1 [2589 kB] Get:191 http://ftpmaster.internal/ubuntu zesty/main arm64 python-pygments all 2.2.0+dfsg-1 [577 kB] Get:192 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 python-urllib3 all 1.19.1-1 [65.9 kB] Get:193 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 python-requests all 2.12.4-1 [84.2 kB] Get:194 http://ftpmaster.internal/ubuntu zesty/universe arm64 python-alabaster all 0.7.8-1 [18.4 kB] Get:195 http://ftpmaster.internal/ubuntu zesty/main arm64 sphinx-common all 1.5.3-1 [384 kB] Get:196 http://ftpmaster.internal/ubuntu zesty/universe arm64 python-sphinx all 1.5.3-1 [427 kB] Get:197 http://ftpmaster.internal/ubuntu zesty/main arm64 t1utils arm64 1.39-2 [47.4 kB] Get:198 http://ftpmaster.internal/ubuntu zesty/main arm64 texlive-binaries arm64 2016.20160513.41080.dfsg-1 [5442 kB] Get:199 http://ftpmaster.internal/ubuntu zesty/main arm64 xdg-utils all 1.1.1-1ubuntu2 [59.6 kB] Get:200 http://ftpmaster.internal/ubuntu zesty/main arm64 texlive-base all 2016.20170123-5 [15.7 MB] Get:201 http://ftpmaster.internal/ubuntu zesty/universe arm64 texlive-fonts-recommended all 2016.20170123-5 [5280 kB] Get:202 http://ftpmaster.internal/ubuntu zesty/universe arm64 texlive-generic-extra all 2016.20170123-5 [14.8 MB] Get:203 http://ftpmaster.internal/ubuntu zesty/main arm64 texlive-latex-base all 2016.20170123-5 [833 kB] Get:204 http://ftpmaster.internal/ubuntu zesty/main arm64 texlive-latex-recommended all 2016.20170123-5 [13.2 MB] Get:205 http://ftpmaster.internal/ubuntu zesty/main arm64 texlive-pictures all 2016.20170123-5 [3881 kB] Get:206 http://ftpmaster.internal/ubuntu zesty/universe arm64 texlive-latex-extra all 2016.20170123-5 [10.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 220 MB in 9s (23.9 MB/s) Selecting previously unselected package libpython3.5-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14061 files and directories currently installed.) Preparing to unpack .../0-libpython3.5-minimal_3.5.3-1_arm64.deb ... Unpacking libpython3.5-minimal:arm64 (3.5.3-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../1-libexpat1_2.2.0-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.0-2) ... Selecting previously unselected package python3.5-minimal. 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Setting up fontconfig-config (2.11.94-0ubuntu2) ... Setting up tex-common (6.06) ... update-language: texlive-base not installed and configured, doing nothing! Setting up pandoc (1.17.2~dfsg-3build1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up flex (2.6.1-1.3) ... Setting up libarchive13:arm64 (3.2.1-6) ... Setting up libboost-thread1.62.0:arm64 (1.62.0+dfsg-4) ... Setting up liblapack3 (3.7.0-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:arm64 (3.5.3-1) ... Setting up libboost-regex1.62.0:arm64 (1.62.0+dfsg-4) ... Setting up doxygen (1.8.13-4ubuntu2) ... Setting up python2.7 (2.7.13-2) ... Setting up libwebpmux2:arm64 (0.5.2-1) ... Setting up libnss3:arm64 (2:3.26.2-1ubuntu1) ... Setting up libharfbuzz0b:arm64 (1.4.2-1) ... Setting up libtiff5:arm64 (4.0.7-5) ... Setting up preview-latex-style (11.90-1ubuntu1) ... Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-5) ... Setting up file (1:5.29-3) ... Setting up libpython-stdlib:arm64 (2.7.13-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-system1.62-dev:arm64 (1.62.0+dfsg-4) ... Setting up libpython2.7:arm64 (2.7.13-2) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:arm64 (2:1.0.9-1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:arm64 (2.7.13-2) ... Setting up libavahi-common3:arm64 (0.6.32-1ubuntu1) ... Setting up cmake (3.7.2-1) ... Setting up python2.7-dev (2.7.13-2) ... Setting up libxcb1:arm64 (1.11.1-1ubuntu1) ... Setting up python (2.7.13-2) ... Setting up libboost-chrono1.62.0:arm64 (1.62.0+dfsg-4) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.3-1) ... Setting up libpython3-stdlib:arm64 (3.5.3-1) ... Setting up libpython-dev:arm64 (2.7.13-2) ... Setting up libfontconfig1:arm64 (2.11.94-0ubuntu2) ... Setting up libsm6:arm64 (2:1.2.2-1) ... Setting up libxcb-render0:arm64 (1.11.1-1ubuntu1) ... Setting up libharfbuzz-icu0:arm64 (1.4.2-1) ... Setting up po-debconf (1.0.20) ... Setting up libboost-regex1.62-dev:arm64 (1.62.0+dfsg-4) ... Setting up libpython3.5:arm64 (3.5.3-1) ... Setting up python-dev (2.7.13-2) ... Setting up libboost-system-dev:arm64 (1.62.0.1) ... Setting up libpoppler64:arm64 (0.48.0-2ubuntu2) ... Setting up python-tz (2014.10~dfsg1-0ubuntu2) ... Setting up libx11-6:arm64 (2:1.6.3-1ubuntu3) ... Setting up python-imagesize (0.7.1-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-pkg-resources (33.1.1-1) ... Setting up python-roman (2.0.0-2) ... Setting up libboost-chrono1.62-dev:arm64 (1.62.0+dfsg-4) ... Setting up libpython3.5-dev:arm64 (3.5.3-1) ... Setting up python-markupsafe (0.23-3) ... Setting up python-numpy (1:1.12.0-2ubuntu1) ... Setting up python-epydoc (3.0.1+dfsg-14) ... Setting up python-six (1.10.0-3) ... Setting up python-pygments (2.2.0+dfsg-1) ... Setting up python-pandas-lib (0.19.2-5ubuntu1) ... Setting up libboost-thread1.62-dev:arm64 (1.62.0+dfsg-4) ... Setting up libxcb-shm0:arm64 (1.11.1-1ubuntu1) ... Setting up libxpm4:arm64 (1:3.5.12-1) ... Setting up libxt6:arm64 (1:1.1.5-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libboost-regex-dev:arm64 (1.62.0.1) ... Setting up libavahi-client3:arm64 (0.6.32-1ubuntu1) ... Setting up python3.5-dev (3.5.3-1) ... Setting up python-pil:arm64 (4.0.0-4) ... Setting up libcups2:arm64 (2.2.2-1) ... Setting up libpython3-dev:arm64 (3.5.3-1) ... Setting up python-urllib3 (1.19.1-1) ... Setting up python-chardet (2.3.0-2) ... Setting up libboost-thread-dev:arm64 (1.62.0.1) ... Setting up libxext6:arm64 (2:1.3.3-1) ... Setting up python-jinja2 (2.9.5-1) ... Setting up python-babel (2.3.4+dfsg.1-2) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libxmu6:arm64 (2:1.1.2-2) ... Setting up python-dateutil (2.5.3-2) ... Setting up python-imaging (4.0.0-4) ... Setting up libcupsimage2:arm64 (2.2.2-1) ... Setting up python-requests (2.12.4-1) ... Setting up libgs9:arm64 (9.19~dfsg+1-0ubuntu7.1) ... Setting up libxi6:arm64 (2:1.7.9-1) ... Setting up libxaw7:arm64 (2:1.0.13-1) ... Setting up libcairo2:arm64 (1.14.8-1) ... Setting up python-pandas (0.19.2-5ubuntu1) ... Setting up texlive-binaries (2016.20160513.41080.dfsg-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.13.1+dfsg-2) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.13.1+dfsg-2) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.5.3-1) ... Processing triggers for tex-common (6.06) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil --all call Setting up texlive-base (2016.20170123-5) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-fonts-recommended (2016.20170123-5) ... Setting up texlive-latex-base (2016.20170123-5) ... Setting up texlive-generic-extra (2016.20170123-5) ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-recommended (2016.20170123-5) ... Setting up texlive-pictures (2016.20170123-5) ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-extra (2016.20170123-5) ... Processing triggers for tex-common (6.06) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up dh-autoreconf (13) ... Setting up python3 (3.5.3-1) ... Setting up python3-dev (3.5.3-1) ... Setting up dh-strip-nondeterminism (0.031-1) ... Setting up dh-python (2.20170125) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up libboost-python1.62-dev (1.62.0+dfsg-4) ... Setting up libboost-python-dev (1.62.0.1) ... Setting up sbuild-build-depends-rdkit-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for systemd (232-19) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-66-generic arm64 (aarch64) Toolchain package versions: binutils_2.28-2ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.3.0-9ubuntu1 gcc-6_6.3.0-9ubuntu1 libc6-dev_2.24-7ubuntu2 libstdc++-6-dev_6.3.0-9ubuntu1 libstdc++6_6.3.0-9ubuntu1 linux-libc-dev_4.10.0-13.15 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.23-1 apt_1.4~rc2 apt-transport-https_1.4~rc2 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu12 base-passwd_3.5.43 bash_4.4-2ubuntu1 binutils_2.28-2ubuntu1 bison_2:3.0.4.dfsg-1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130 cmake_3.7.2-1 cmake-data_3.7.2-1 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-1ubuntu3 cpp-6_6.3.0-9ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_13 dh-python_2.20170125 dh-strip-nondeterminism_0.031-1 diffutils_1:3.5-3 dmsetup_2:1.02.136-1ubuntu2 docutils-common_0.13.1+dfsg-2 doxygen_1.8.13-4ubuntu2 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.29-3 findutils_4.6.0+git+20161106-2 flex_2.6.1-1.3 fontconfig-config_2.11.94-0ubuntu2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-3 g++_4:6.3.0-1ubuntu3 g++-6_6.3.0-9ubuntu1 gcc_4:6.3.0-1ubuntu3 gcc-6_6.3.0-9ubuntu1 gcc-6-base_6.3.0-9ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-4ubuntu1 hostname_3.18 icu-devtools_57.1-5 init_1.47 init-system-helpers_1.47 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 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libjs-sphinxdoc_1.5.3-1 libjs-underscore_1.8.3~dfsg-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkpathsea6_2016.20160513.41080.dfsg-1 libkrb5-26-heimdal_7.1.0+dfsg-9ubuntu1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 liblapack3_3.7.0-1 liblcms2-2_2.7-1ubuntu1 libldap-2.4-2_2.4.44+dfsg-3ubuntu2 libldap-common_2.4.44+dfsg-3ubuntu2 libllvm4.0_1:4.0-1ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblua5.1-0_5.1.5-8.1build1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.29-3 libmagic1_1:5.29-3 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libnspr4_2:4.12-6ubuntu1 libnss3_2:3.26.2-1ubuntu1 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpaper-utils_1.1.24+nmu4ubuntu1 libpaper1_1.1.24+nmu4ubuntu1 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1-1 libpipeline1_1.4.1-2 libpixman-1-0_0.34.0-1 libpng16-16_1.6.28-1 libpoppler64_0.48.0-2ubuntu2 libpotrace0_1.13-3 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-4 libptexenc1_2016.20160513.41080.dfsg-1 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-2 libpython2.7-dev_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libpython3-dev_3.5.3-1 libpython3-stdlib_3.5.3-1 libpython3.5_3.5.3-1 libpython3.5-dev_3.5.3-1 libpython3.5-minimal_3.5.3-1 libpython3.5-stdlib_3.5.3-1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.1.0+dfsg-9ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.16.2-3 libsqlite3-dev_3.16.2-3 libss2_1.43.4-2 libssl1.0.0_1.0.2g-1ubuntu11 libstdc++-6-dev_6.3.0-9ubuntu1 libstdc++6_6.3.0-9ubuntu1 libsynctex1_2016.20160513.41080.dfsg-1 libsystemd0_232-19 libtasn1-6_4.10-1 libtexlua52_2016.20160513.41080.dfsg-1 libtiff5_4.0.7-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_6.3.0-9ubuntu1 libudev1_232-19 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libuv1_1.9.1-3 libwebp6_0.5.2-1 libwebpmux2_0.5.2-1 libwind0-heimdal_7.1.0+dfsg-9ubuntu1 libx11-6_2:1.6.3-1ubuntu3 libx11-data_2:1.6.3-1ubuntu3 libxapian30_1.4.3-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-2.2 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libyaml-0-2_0.1.7-2 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texlive-binaries_2016.20160513.41080.dfsg-1 texlive-fonts-recommended_2016.20170123-5 texlive-generic-extra_2016.20170123-5 texlive-latex-base_2016.20170123-5 texlive-latex-extra_2016.20170123-5 texlive-latex-recommended_2016.20170123-5 texlive-pictures_2016.20170123-5 tzdata_2017a-1 ubuntu-keyring_2016.10.27 ucf_3.0036 util-linux_2.29-1ubuntu2 x11-common_1:7.7+16ubuntu2 xdg-utils_1.1.1-1ubuntu2 xml-core_0.17 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 7 13:15:30 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rdkit_201603.5-2.dsc dpkg-source: info: extracting rdkit in rdkit-201603.5 dpkg-source: info: unpacking rdkit_201603.5.orig.tar.gz dpkg-source: info: unpacking rdkit_201603.5-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package rdkit dpkg-buildpackage: info: source version 201603.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build rdkit-201603.5 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2 --buildsystem=cmake --parallel dh_testdir -O--buildsystem=cmake -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' find /<> -name "*.pyc" | xargs rm -f rm -f -r Projects/DbCLI/testData/bzr/ rdkit/Chem/inchi.py rm -f -r Docs/Book/_build Code/docs rdkit/docs Code/doxygen_sqlite3.db rm -f \ Code/ForceField/MMFF/test_data/MMFF94_dative_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_dative_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_reference.log \ Code/ForceField/MMFF/test_data/MMFF94s_reference.log \ Code/ForceField/MMFF/test_data/testMMFFForceField.log \ Code/GraphMol/Depictor/test_data/cis_trans_cpp.out.sdf \ Code/GraphMol/Depictor/test_data/collisions.out.sdf \ Code/GraphMol/Depictor/test_data/first_200.out.sdf \ Code/GraphMol/Depictor/test_data/test1.out.sdf \ Code/GraphMol/FileParsers/test_data/blah.sdf \ Code/GraphMol/FileParsers/test_data/cdk2_stereo.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.tdt \ Code/GraphMol/FileParsers/test_data/outNCI_first_200.props.sdf \ Code/GraphMol/FileParsers/test_data/outSmiles.csv \ Code/GraphMol/ForceFieldHelpers/UFF/test_data/Issue62.sdf \ Code/GraphMol/MolAlign/test_data/ref_e2_pyCrippenO3A.sdf \ Code/GraphMol/SLNParse/lex.yysln.cpp \ Code/GraphMol/SLNParse/sln.tab.cpp \ Code/GraphMol/SLNParse/sln.tab.hpp \ Code/GraphMol/SmilesParse/lex.yysmarts.cpp \ Code/GraphMol/SmilesParse/lex.yysmiles.cpp \ Code/GraphMol/SmilesParse/smarts.tab.cpp \ Code/GraphMol/SmilesParse/smarts.tab.hpp \ Code/GraphMol/SmilesParse/smiles.tab.cpp \ Code/GraphMol/SmilesParse/smiles.tab.hpp \ Code/GraphMol/Wrap/test_data/outNCI_few.sdf \ Code/GraphMol/Wrap/test_data/outSmiles.txt \ Code/RDGeneral/versions.cpp \ Docs/Book/Cartridge.rst \ Docs/Book/Cookbook.rst \ Docs/Book/Install.rst \ Docs/Book/Overview.rst \ rdkit/ML/Data/test_data/testgeneral.dat.pkl \ rdkit/ML/Data/test_data/testquant.qdat.pkl dh_auto_clean make[1]: Leaving directory '/<>' dh_clean -O--buildsystem=cmake -O--parallel debian/rules build-arch dh build-arch --with python2 --buildsystem=cmake --parallel dh_testdir -a -O--buildsystem=cmake -O--parallel dh_update_autotools_config -a -O--buildsystem=cmake -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON \ -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF \ -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON \ -DRDK_OPTIMIZE_NATIVE=OFF cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_OPTIMIZE_NATIVE=OFF -- The C compiler identification is GNU 6.3.0 -- The CXX compiler identification is GNU 6.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found PythonInterp: /usr/bin/python (found version "2.7.13") -- Found PythonLibs: /usr/lib/aarch64-linux-gnu/libpython2.7.so (found version "2.7.13") -- Boost version: 1.62.0 -- Found the following Boost libraries: -- python Python Install directory /usr/lib/python2.7/dist-packages -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.62.0 -- Found the following Boost libraries: -- thread -- system -- chrono -- date_time -- atomic -- Boost version: 1.62.0 -- Found the following Boost libraries: -- serialization == Using strict rotor definition == Updating Filters.cpp from pains file == Done updating pains files -- Boost version: 1.62.0 -- Found the following Boost libraries: -- regex -- Configuring done -- Generating done CMake 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'/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /<>/External/INCHI-API/python/noinchi.py /<>/rdkit/Chem/inchi.py make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /<>/Code/RDGeneral/Invariant.cpp Scanning dependencies of target hc [ 0%] Built target inchi_support make[4]: Leaving 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/<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc.dir/hc.c.o -c /<>/Code/ML/Cluster/Murtagh/hc.c [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function 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1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /<>/Code/RDGeneral/utils.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /<>/Code/RDGeneral/RDLog.cpp [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /<>/Code/RDGeneral/Dict.cpp [ 1%] Linking CXX shared library ../../lib/libChemicalFeatures.so cd /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libChemicalFeatures.so.1 -o ../../lib/libChemicalFeatures.so.1.2016.03.5 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libChemicalFeatures.so.1.2016.03.5 ../../lib/libChemicalFeatures.so.1 ../../lib/libChemicalFeatures.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /<>/Code/RDGeneral/LocaleSwitcher.cpp [ 1%] Built target ChemicalFeatures [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /<>/Code/RDGeneral/versions.cpp [ 2%] Linking CXX shared library ../../lib/libRDGeneral.so cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDGeneral.so.1 -o ../../lib/libRDGeneral.so.1.2016.03.5 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeneral.so.1.2016.03.5 ../../lib/libRDGeneral.so.1 ../../lib/libRDGeneral.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 2%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/RDBoost /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/RDBoost /<>/obj-aarch64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/RDGeneral /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/RDGeneral /<>/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics /<>/obj-aarch64-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataStructs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataStructs /<>/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target testDict Scanning dependencies of target RDBoost make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o Scanning dependencies of target testMatrices cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDict.dir/testDict.cpp.o -c /<>/Code/RDGeneral/testDict.cpp [ 3%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/RDBoost && /usr/bin/c++ -DRDBoost_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /<>/Code/RDBoost/Wrap.cpp make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' Scanning dependencies of target DataStructs make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 3%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Numerics && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /<>/Code/Numerics/testMatrices.cpp [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /<>/Code/DataStructs/BitVect.cpp [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /<>/Code/DataStructs/SparseBitVect.cpp [ 3%] Linking CXX shared library ../../lib/libRDBoost.so cd /<>/obj-aarch64-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDBoost.so.1 -o ../../lib/libRDBoost.so.1.2016.03.5 CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDGeneral.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization -lpthread -lboost_thread -lboost_system cd /<>/obj-aarch64-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDBoost.so.1.2016.03.5 ../../lib/libRDBoost.so.1 ../../lib/libRDBoost.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /<>/Code/DataStructs/ExplicitBitVect.cpp [ 3%] Built target RDBoost make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics/EigenSolvers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers /<>/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= Scanning dependencies of target EigenSolvers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 4%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /<>/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp [ 4%] Linking CXX executable testDict cd /<>/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testDict.dir/testDict.cpp.o -o testDict -rdynamic ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread [ 5%] Linking CXX executable testMatrices cd /<>/obj-aarch64-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices -rdynamic ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 5%] Built target testDict make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Catalogs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Catalogs /<>/obj-aarch64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= Scanning dependencies of target Catalogs make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /<>/Code/Catalogs/Catalog.cpp make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 5%] Built target testMatrices make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Query /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Query /<>/obj-aarch64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= Scanning dependencies of target testQuery make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 6%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Query && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testQuery.dir/test.cpp.o -c /<>/Code/Query/test.cpp [ 6%] Linking CXX shared library ../../../lib/libEigenSolvers.so cd /<>/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libEigenSolvers.so.1 -o ../../../lib/libEigenSolvers.so.1.2016.03.5 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1 ../../../lib/libEigenSolvers.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 6%] Built target EigenSolvers make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataManip/MetricMatrixCalc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= Scanning dependencies of target testMatCalc make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 6%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /<>/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /<>/Code/DataStructs/Utils.cpp [ 7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED 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CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /<>/Code/Catalogs/CatalogEntry.cpp [ 8%] Linking CXX shared library ../../lib/libCatalogs.so cd /<>/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libCatalogs.so.1 -o ../../lib/libCatalogs.so.1.2016.03.5 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libCatalogs.so.1.2016.03.5 ../../lib/libCatalogs.so.1 ../../lib/libCatalogs.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 8%] Built target Catalogs make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/SimDivPickers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/SimDivPickers /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target SimDivPickers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 8%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /<>/Code/SimDivPickers/DistPicker.cpp [ 8%] Linking CXX executable testMatCalc [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /<>/Code/DataStructs/base64.cpp cd /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc -rdynamic ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 8%] Built target testMatCalc make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ML/Cluster/Murtagh /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= Scanning dependencies of target Clustering make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 8%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DClustering_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /<>/Code/ML/Cluster/Murtagh/Clustering.cpp [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /<>/Code/DataStructs/BitOps.cpp [ 8%] Linking CXX executable testQuery cd /<>/obj-aarch64-linux-gnu/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testQuery.dir/test.cpp.o -o testQuery -rdynamic ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 8%] Built target testQuery make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /<>/Code/ChemicalFeatures/testChemicalFeatures.cpp [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /<>/Code/SimDivPickers/MaxMinPicker.cpp [ 10%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /<>/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 10%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /<>/Code/DataStructs/DiscreteDistMat.cpp [ 10%] Linking CXX executable testChemicalFeatures cd /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures -rdynamic ../../lib/libChemicalFeatures.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 10%] Built target testChemicalFeatures [ 10%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /<>/Code/DataStructs/DiscreteValueVect.cpp [ 11%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /<>/Code/DataStructs/FPBReader.cpp [ 12%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libhc.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 12%] Built target Clustering make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/RDBoost/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/RDBoost/Wrap /<>/obj-aarch64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= 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/usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libSimDivPickers.so.1 -o ../../lib/libSimDivPickers.so.1.2016.03.5 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libhc.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libSimDivPickers.so.1.2016.03.5 ../../lib/libSimDivPickers.so.1 ../../lib/libSimDivPickers.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 12%] Built target SimDivPickers [ 12%] Linking CXX shared library ../../lib/libDataStructs.so cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libDataStructs.so.1 -o ../../lib/libDataStructs.so.1.2016.03.5 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libDataStructs.so.1 ../../lib/libDataStructs.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' In file included from /<>/Code/RDBoost/Wrap/RDBase.cpp:15:0: /<>/Code/RDBoost/python_streambuf.h: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’: /<>/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate] " returning."); ^ /<>/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept [ 12%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataStructs/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataStructs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataStructs /<>/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataStructs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataStructs /<>/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= Scanning dependencies of target testFPB Scanning dependencies of target testDataStructs Scanning dependencies of target cDataStructs make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /<>/Code/DataStructs/Wrap/DataStructs.cpp [ 13%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /<>/Code/DataStructs/testFPB.cpp [ 14%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /<>/Code/DataStructs/testDatastructs.cpp [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /<>/Code/DataStructs/Wrap/DiscreteValueVect.cpp [ 15%] Linking CXX executable testFPB cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB -rdynamic ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 15%] Built target testFPB make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Geometry /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Geometry /<>/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeometryLib make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /<>/Code/Geometry/point.cpp [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /<>/Code/Geometry/Transform2D.cpp [ 15%] Linking CXX executable testDataStructs cd /<>/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs -rdynamic ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 15%] Built target testDataStructs make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataManip/MetricMatrixCalc/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= Scanning dependencies of target rdMetricMatrixCalc make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 15%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /<>/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /<>/Code/DataStructs/Wrap/SparseIntVect.cpp [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /<>/Code/Geometry/Transform3D.cpp [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /<>/Code/Geometry/UniformGrid3D.cpp [ 15%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 15%] Built target rdMetricMatrixCalc make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/SimDivPickers/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target rdSimDivPickers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /<>/Code/SimDivPickers/Wrap/MaxMinPicker.cpp [ 16%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /<>/Code/Geometry/GridUtils.cpp [ 17%] Linking CXX shared module ../../../rdkit/rdBase.so cd /<>/obj-aarch64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 17%] Built target rdBase make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ML/InfoTheory /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target InfoTheory make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 17%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory && /usr/bin/c++ -DInfoTheory_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /<>/Code/ML/InfoTheory/InfoBitRanker.cpp [ 17%] Linking CXX shared library ../../lib/libRDGeometryLib.so cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDGeometryLib.so.1 -o ../../lib/libRDGeometryLib.so.1.2016.03.5 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1 ../../lib/libRDGeometryLib.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 17%] Built target RDGeometryLib make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Geometry /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Geometry /<>/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= Scanning dependencies of target testGrid make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 17%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /<>/Code/Geometry/testGrid.cpp [ 17%] Linking CXX shared library ../../../lib/libInfoTheory.so cd /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libInfoTheory.so.1 -o ../../../lib/libInfoTheory.so.1.2016.03.5 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libInfoTheory.so.1.2016.03.5 ../../../lib/libInfoTheory.so.1 ../../../lib/libInfoTheory.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 17%] Built target InfoTheory make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Geometry /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Geometry /<>/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testTransforms make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 17%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /<>/Code/Geometry/testTransforms.cpp [ 17%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /<>/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp [ 17%] Linking CXX executable testGrid cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid -rdynamic ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 17%] Built target testGrid make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Geometry/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Geometry/Wrap /<>/obj-aarch64-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target rdGeometry make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 17%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /<>/Code/Geometry/Wrap/Point.cpp [ 18%] Linking CXX executable testTransforms cd /<>/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms -rdynamic ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 18%] Built target testTransforms make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics/Alignment /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target Alignment make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 18%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /<>/Code/Numerics/Alignment/AlignPoints.cpp [ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /<>/Code/DataStructs/Wrap/wrap_SparseBV.cpp [ 18%] Linking CXX shared library ../../../lib/libAlignment.so cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libAlignment.so.1 -o ../../../lib/libAlignment.so.1.2016.03.5 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libAlignment.so.1 ../../../lib/libAlignment.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 18%] Built target Alignment make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics/Optimizer /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 18%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /<>/Code/Numerics/Optimizer/BFGSOpt.cpp [ 18%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /<>/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp [ 19%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /<>/Code/Numerics/Optimizer/LinearSearch.cpp [ 19%] Linking CXX shared library ../../../lib/libOptimizer.so cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libOptimizer.so.1 -o ../../../lib/libOptimizer.so.1.2016.03.5 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libOptimizer.so.1 ../../../lib/libOptimizer.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 19%] Built target Optimizer make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= Scanning dependencies of target GraphMol make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /<>/Code/GraphMol/Atom.cpp [ 20%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libSimDivPickers.so.1.2016.03.5 ../../../lib/libhc.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 20%] Built target rdSimDivPickers make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ML/InfoTheory/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target rdInfoTheory make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /<>/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp [ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /<>/Code/Geometry/Wrap/UniformGrid3D.cpp [ 20%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /<>/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /<>/Code/GraphMol/QueryAtom.cpp [ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /<>/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /<>/Code/GraphMol/QueryBond.cpp [ 20%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /<>/Code/DataStructs/Wrap/wrap_BitOps.cpp [ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /<>/Code/Geometry/Wrap/rdGeometry.cpp [ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /<>/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /<>/Code/GraphMol/Bond.cpp [ 21%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /<>/obj-aarch64-linux-gnu/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 21%] Built target rdGeometry make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ML/Data /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ML/Data /<>/obj-aarch64-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= Scanning dependencies of target cQuantize make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 21%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ML/Data && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /<>/Code/ML/Data/cQuantize.cpp [ 22%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libInfoTheory.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 22%] Built target rdInfoTheory make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics/Alignment /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target testAlignment make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 22%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /<>/Code/Numerics/Alignment/testAlignment.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /<>/Code/GraphMol/MolOps.cpp [ 24%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /<>/obj-aarch64-linux-gnu/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libInfoTheory.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 24%] Built target cQuantize make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics/Alignment/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdAlignment make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 24%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /<>/Code/Numerics/Alignment/Wrap/rdAlignment.cpp [ 24%] Linking CXX executable testAlignment cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment -rdynamic ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 24%] Built target testAlignment make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics/Optimizer /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= Scanning dependencies of target testOptimizer make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 24%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /<>/Code/Numerics/Optimizer/testOptimizer.cpp [ 24%] Linking CXX executable testOptimizer cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer -rdynamic ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 24%] Built target testOptimizer make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ForceField /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ForceField /<>/obj-aarch64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= Scanning dependencies of target ForceField make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /<>/Code/ForceField/ForceField.cpp [ 25%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /<>/Code/DataStructs/Wrap/wrap_FPB.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /<>/Code/GraphMol/FindRings.cpp [ 25%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libAlignment.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 25%] Built target rdAlignment [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /<>/Code/GraphMol/ROMol.cpp [ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /<>/Code/ForceField/UFF/AngleBend.cpp [ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /<>/Code/ForceField/UFF/BondStretch.cpp [ 26%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /<>/Code/DataStructs/Wrap/wrap_Utils.cpp [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /<>/Code/GraphMol/RWMol.cpp [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /<>/Code/GraphMol/PeriodicTable.cpp [ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /<>/Code/ForceField/UFF/Nonbonded.cpp [ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /<>/Code/ForceField/UFF/Inversion.cpp [ 27%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /<>/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 27%] Built target cDataStructs [ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /<>/Code/ForceField/UFF/TorsionAngle.cpp [ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /<>/Code/ForceField/UFF/DistanceConstraint.cpp [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /<>/Code/GraphMol/atomic_data.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /<>/Code/ForceField/UFF/AngleConstraint.cpp [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /<>/Code/GraphMol/QueryOps.cpp [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /<>/Code/GraphMol/MolPickler.cpp [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /<>/Code/GraphMol/Canon.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /<>/Code/ForceField/UFF/TorsionConstraint.cpp [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /<>/Code/GraphMol/AtomIterators.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /<>/Code/ForceField/UFF/PositionConstraint.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /<>/Code/ForceField/UFF/Params.cpp [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /<>/Code/GraphMol/BondIterators.cpp [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /<>/Code/GraphMol/Aromaticity.cpp [ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /<>/Code/ForceField/MMFF/AngleBend.cpp [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /<>/Code/GraphMol/Kekulize.cpp [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /<>/Code/GraphMol/MolDiscriminators.cpp [ 30%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /<>/Code/GraphMol/ConjugHybrid.cpp [ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /<>/Code/ForceField/MMFF/BondStretch.cpp [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /<>/Code/GraphMol/AddHs.cpp [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /<>/Code/GraphMol/Matrices.cpp [ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /<>/Code/ForceField/MMFF/StretchBend.cpp [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /<>/Code/GraphMol/Chirality.cpp [ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /<>/Code/ForceField/MMFF/OopBend.cpp [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /<>/Code/GraphMol/RingInfo.cpp [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /<>/Code/GraphMol/Conformer.cpp [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /<>/Code/GraphMol/Renumber.cpp [ 32%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /<>/Code/ForceField/MMFF/TorsionAngle.cpp [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /<>/Code/GraphMol/AdjustQuery.cpp [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /<>/Code/GraphMol/Resonance.cpp [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /<>/Code/ForceField/MMFF/Nonbonded.cpp [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /<>/Code/ForceField/MMFF/DistanceConstraint.cpp [ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /<>/Code/GraphMol/new_canon.cpp [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /<>/Code/ForceField/MMFF/AngleConstraint.cpp [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /<>/Code/ForceField/MMFF/TorsionConstraint.cpp [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /<>/Code/ForceField/MMFF/PositionConstraint.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /<>/Code/ForceField/MMFF/Params.cpp [ 35%] Linking CXX shared library ../../lib/libGraphMol.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libGraphMol.so.1 -o ../../lib/libGraphMol.so.1.2016.03.5 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libGraphMol.so.1 ../../lib/libGraphMol.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 35%] Built target GraphMol make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Substruct /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolTransforms /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target MolTransforms make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' Scanning dependencies of target SmilesParse Scanning dependencies of target SubstructMatch make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /<>/Code/GraphMol/SmilesParse/SmilesParse.cpp [ 35%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /<>/Code/GraphMol/MolTransforms/MolTransforms.cpp [ 35%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /<>/Code/GraphMol/Substruct/SubstructMatch.cpp [ 35%] Linking CXX shared library ../../lib/libForceField.so cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libForceField.so.1 -o ../../lib/libForceField.so.1.2016.03.5 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libOptimizer.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libForceField.so.1.2016.03.5 ../../lib/libForceField.so.1 ../../lib/libForceField.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 35%] Built target ForceField [ 35%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /<>/Code/GraphMol/Substruct/SubstructUtils.cpp [ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /<>/Code/GraphMol/SmilesParse/SmilesParseOps.cpp [ 35%] Linking CXX shared library ../../../lib/libMolTransforms.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libMolTransforms.so.1 -o ../../../lib/libMolTransforms.so.1.2016.03.5 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1 ../../../lib/libMolTransforms.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 35%] Built target MolTransforms make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Depictor /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= Scanning dependencies of target Depictor make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /<>/Code/GraphMol/Depictor/RDDepictor.cpp [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /<>/Code/GraphMol/Depictor/EmbeddedFrag.cpp [ 35%] Linking CXX shared library ../../../lib/libSubstructMatch.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libSubstructMatch.so.1 -o ../../../lib/libSubstructMatch.so.1.2016.03.5 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1 ../../../lib/libSubstructMatch.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 35%] Built target SubstructMatch make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/PartialCharges /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target PartialCharges make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 35%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /<>/Code/GraphMol/PartialCharges/GasteigerCharges.cpp [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /<>/Code/GraphMol/Depictor/DepictUtils.cpp [ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /<>/Code/GraphMol/SmilesParse/SmilesWrite.cpp [ 36%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /<>/Code/GraphMol/PartialCharges/GasteigerParams.cpp [ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /<>/Code/GraphMol/SmilesParse/SmartsWrite.cpp [ 37%] Linking CXX shared library ../../../lib/libDepictor.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libDepictor.so.1 -o ../../../lib/libDepictor.so.1.2016.03.5 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libDepictor.so.1 ../../../lib/libDepictor.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 37%] Built target Depictor make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= Scanning dependencies of target Subgraphs make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 37%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -I/<>/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /<>/Code/GraphMol/Subgraphs/Subgraphs.cpp [ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /<>/Code/GraphMol/SmilesParse/smarts.tab.cpp [ 37%] Linking CXX shared library ../../../lib/libPartialCharges.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libPartialCharges.so.1 -o ../../../lib/libPartialCharges.so.1.2016.03.5 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1 ../../../lib/libPartialCharges.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 37%] Built target PartialCharges make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolTransforms/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolTransforms make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 37%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /<>/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp smarts.yy: In function ‘void yysmarts_error(const char*, std::vector*, void*, const char*)’: smarts.yy:25:29: warning: unused parameter ‘input’ [-Wunused-parameter] smarts.yy:26:46: warning: unused parameter ‘ms’ [-Wunused-parameter] smarts.yy:27:9: warning: unused parameter ‘scanner’ [-Wunused-parameter] [ 37%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -I/<>/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /<>/Code/GraphMol/Subgraphs/SubgraphUtils.cpp [ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /<>/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy: In function ‘void yysmiles_error(const char*, std::vector*, std::__cxx11::list*, void*, const char*)’: smiles.yy:38:29: warning: unused parameter ‘input’ [-Wunused-parameter] smiles.yy:40:42: warning: unused parameter ‘branchPoints’ [-Wunused-parameter] smiles.yy:41:9: warning: unused parameter ‘scanner’ [-Wunused-parameter] [ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /<>/Code/GraphMol/SmilesParse/lex.yysmarts.cpp [ 38%] Linking CXX shared library ../../../lib/libSubgraphs.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libSubgraphs.so.1 -o ../../../lib/libSubgraphs.so.1.2016.03.5 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1 ../../../lib/libSubgraphs.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 38%] Built target Subgraphs make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ShapeHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ShapeHelpers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 39%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /<>/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp [ 40%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /<>/Code/GraphMol/SmilesParse/lex.yysmiles.cpp [ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system /Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function ‘void yy_fatal_error(const char*, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2240:58: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function ‘void* yysmiles_alloc(yy_size_t, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2572:50: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function ‘void* yysmiles_realloc(void*, yy_size_t, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2577:65: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function ‘void yysmiles_free(void*, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2589:43: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 40%] Built target rdMolTransforms make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target MolCatalog make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 41%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /<>/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 41%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /<>/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp [ 41%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /<>/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 41%] Linking CXX shared library ../../../lib/libSmilesParse.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libSmilesParse.so.1 -o ../../../lib/libSmilesParse.so.1.2016.03.5 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1 ../../../lib/libSmilesParse.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 41%] Built target SmilesParse make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SLNParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target SLNParse make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 42%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /<>/Code/GraphMol/SLNParse/SLNParse.cpp [ 42%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /<>/Code/GraphMol/SLNParse/SLNAttribs.cpp [ 42%] Linking CXX shared library ../../../lib/libMolCatalog.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libMolCatalog.so.1 -o ../../../lib/libMolCatalog.so.1.2016.03.5 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread [ 42%] Linking CXX shared library ../../../lib/libShapeHelpers.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libShapeHelpers.so.1 -o ../../../lib/libShapeHelpers.so.1.2016.03.5 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolCatalog.so.1.2016.03.5 ../../../lib/libMolCatalog.so.1 ../../../lib/libMolCatalog.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 42%] Built target MolCatalog make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= Scanning dependencies of target rdqueries make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /<>/Code/GraphMol/Wrap/rdqueries.cpp cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libShapeHelpers.so.1.2016.03.5 ../../../lib/libShapeHelpers.so.1 ../../../lib/libShapeHelpers.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 42%] Built target ShapeHelpers make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ChemicalFeatures/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdChemicalFeatures make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 42%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /<>/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp [ 42%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /<>/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp [ 42%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /<>/Code/GraphMol/SLNParse/sln.tab.cpp [ 42%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /<>/Code/GraphMol/SLNParse/lex.yysln.cpp [ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /<>/Code/GraphMol/Wrap/Queries.cpp /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function ‘void yy_fatal_error(const char*, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2585:58: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function ‘void* yysln_alloc(yy_size_t, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2917:47: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function ‘void* yysln_realloc(void*, yy_size_t, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2922:62: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function ‘void yysln_free(void*, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2934:40: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] sln.yy: In function ‘void yysln_error(const char*, std::vector*, bool, void*, const char*)’: sln.yy:60:43: warning: unused parameter ‘ms’ [-Wunused-parameter] sln.yy:60:51: warning: unused parameter ‘doQ’ [-Wunused-parameter] sln.yy:61:13: warning: unused parameter ‘scanner’ [-Wunused-parameter] [ 42%] Linking CXX shared library ../../../lib/libSLNParse.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libSLNParse.so.1 -o ../../../lib/libSLNParse.so.1.2016.03.5 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_regex ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSLNParse.so.1.2016.03.5 ../../../lib/libSLNParse.so.1 ../../../lib/libSLNParse.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 42%] Built target SLNParse make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ForceFieldHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target FileParsers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build Scanning dependencies of target ForceFieldHelpers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 42%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o [ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /<>/Code/GraphMol/FileParsers/Mol2FileParser.cpp [ 43%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libChemicalFeatures.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 43%] Built target rdChemicalFeatures make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolAlign /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target MolAlign make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 43%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /<>/Code/GraphMol/MolAlign/AlignMolecules.cpp [ 43%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp [ 43%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /<>/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp [ 43%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 43%] Built target rdqueries make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMemTest1 make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /<>/Code/GraphMol/memtest1.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /<>/Code/GraphMol/FileParsers/MolFileParser.cpp [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp [ 44%] Linking CXX executable graphmolMemTest1 cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 -rdynamic ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 44%] Built target graphmolMemTest1 make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolqueryTest make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /<>/Code/GraphMol/querytest.cpp [ 44%] Linking CXX shared library ../../../lib/libMolAlign.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libMolAlign.so.1 -o ../../../lib/libMolAlign.so.1.2016.03.5 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libMolAlign.so.1 ../../../lib/libMolAlign.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 44%] Built target MolAlign make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolcpTest make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /<>/Code/GraphMol/cptest.cpp [ 45%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp [ 45%] Linking CXX executable graphmolqueryTest cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest -rdynamic ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 45%] Built target graphmolqueryTest make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolIterTest make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 46%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /<>/Code/GraphMol/itertest.cpp [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /<>/Code/GraphMol/FileParsers/MolFileStereochem.cpp [ 47%] Linking CXX executable graphmolcpTest cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest -rdynamic ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 47%] Built target graphmolcpTest make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestCanon make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 47%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /<>/Code/GraphMol/testCanon.cpp [ 47%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp [ 47%] Linking CXX executable graphmolIterTest cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest -rdynamic ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 47%] Built target graphmolIterTest make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemTransforms /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target ChemTransforms make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 47%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /<>/Code/GraphMol/ChemTransforms/ChemTransforms.cpp [ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /<>/Code/GraphMol/FileParsers/MolFileWriter.cpp [ 47%] Linking CXX executable graphmoltestCanon cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon -rdynamic ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 47%] Built target graphmoltestCanon make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smaTest1 make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 47%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /<>/Code/GraphMol/SmilesParse/smatest.cpp [ 47%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp [ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /<>/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp [ 48%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /<>/Code/GraphMol/ChemTransforms/MolFragmenter.cpp [ 48%] Linking CXX shared library ../../../lib/libForceFieldHelpers.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libForceFieldHelpers.so.1 -o ../../../lib/libForceFieldHelpers.so.1.2016.03.5 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1 ../../../lib/libForceFieldHelpers.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 48%] Built target ForceFieldHelpers make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Fingerprints /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target Fingerprints make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /<>/Code/GraphMol/Fingerprints/Fingerprints.cpp [ 48%] Linking CXX executable smaTest1 cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 -rdynamic ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 48%] Built target smaTest1 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs1 make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 49%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -I/<>/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /<>/Code/GraphMol/Subgraphs/test1.cpp [ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /<>/Code/GraphMol/FileParsers/SDMolSupplier.cpp [ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /<>/Code/GraphMol/Fingerprints/PatternFingerprints.cpp [ 50%] Linking CXX shared library ../../../lib/libChemTransforms.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libChemTransforms.so.1 -o ../../../lib/libChemTransforms.so.1.2016.03.5 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1 ../../../lib/libChemTransforms.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 50%] Built target ChemTransforms make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs2 make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 50%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -I/<>/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /<>/Code/GraphMol/Subgraphs/test2.cpp [ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /<>/Code/GraphMol/FileParsers/SDWriter.cpp [ 50%] Linking CXX executable testSubgraphs1 cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 -rdynamic ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 50%] Built target testSubgraphs1 make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FilterCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FilterCatalog make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 50%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /<>/Code/GraphMol/FilterCatalog/Filters.cpp [ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /<>/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp [ 50%] Linking CXX executable testSubgraphs2 cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 -rdynamic ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 50%] Built target testSubgraphs2 make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FragCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FragCatalog make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 51%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /<>/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp [ 51%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /<>/Code/GraphMol/Fingerprints/MorganFingerprints.cpp [ 51%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /<>/Code/GraphMol/FilterCatalog/FilterCatalog.cpp [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /<>/Code/GraphMol/FileParsers/SmilesWriter.cpp [ 51%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /<>/Code/GraphMol/FragCatalog/FragCatGenerator.cpp [ 51%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /<>/Code/GraphMol/Fingerprints/AtomPairs.cpp [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /<>/Code/GraphMol/FileParsers/TDTMolSupplier.cpp [ 51%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /<>/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp [ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /<>/Code/GraphMol/Fingerprints/MACCS.cpp [ 52%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /<>/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /<>/Code/GraphMol/FileParsers/TDTWriter.cpp [ 53%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /<>/Code/GraphMol/FragCatalog/FragCatParams.cpp [ 53%] Linking CXX shared library ../../../lib/libFingerprints.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libFingerprints.so.1 -o ../../../lib/libFingerprints.so.1.2016.03.5 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libFingerprints.so.1 ../../../lib/libFingerprints.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 53%] Built target Fingerprints [ 53%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /<>/Code/GraphMol/FragCatalog/FragFPGenerator.cpp In file included from /<>/Code/RDGeneral/types.h:20:0, from /<>/Code/GraphMol/FileParsers/MolWriters.h:14, from /<>/Code/GraphMol/FileParsers/TDTWriter.cpp:16: /<>/Code/GraphMol/FileParsers/TDTWriter.cpp: In destructor ‘virtual RDKit::TDTWriter::~TDTWriter()’: /<>/Code/RDGeneral/Invariant.h:100:11: warning: throw will always call terminate() [-Wterminate] throw inv; \ ^ /<>/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro ‘CHECK_INVARIANT’ CHECK_INVARIANT(dp_ostream, ^ /<>/Code/RDGeneral/Invariant.h:100:11: note: in C++11 destructors default to noexcept throw inv; \ ^ /<>/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro ‘CHECK_INVARIANT’ CHECK_INVARIANT(dp_ostream, ^ [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /<>/Code/GraphMol/FileParsers/TplFileParser.cpp [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /<>/Code/GraphMol/FileParsers/TplFileWriter.cpp [ 53%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /<>/Code/GraphMol/FilterCatalog/FilterMatchers.cpp [ 54%] Linking CXX shared library ../../../lib/libFragCatalog.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libFragCatalog.so.1 -o ../../../lib/libFragCatalog.so.1.2016.03.5 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFragCatalog.so.1.2016.03.5 ../../../lib/libFragCatalog.so.1 ../../../lib/libFragCatalog.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 54%] Built target FragCatalog make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/PartialCharges /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target testPartialCharges make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 54%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /<>/Code/GraphMol/PartialCharges/test1.cpp [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /<>/Code/GraphMol/FileParsers/PDBParser.cpp [ 55%] Linking CXX shared library ../../../lib/libFilterCatalog.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libFilterCatalog.so.1 -o ../../../lib/libFilterCatalog.so.1.2016.03.5 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 -lboost_serialization ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /<>/Code/GraphMol/FileParsers/PDBWriter.cpp cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFilterCatalog.so.1.2016.03.5 ../../../lib/libFilterCatalog.so.1 ../../../lib/libFilterCatalog.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 55%] Built target FilterCatalog make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/PartialCharges/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target rdPartialCharges make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 55%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /<>/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp [ 55%] Linking CXX executable testPartialCharges cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges -rdynamic ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 55%] Built target testPartialCharges make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ForceFieldHelpers/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceFieldHelpers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 56%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /<>/Code/GraphMol/FileParsers/PDBSupplier.cpp [ 57%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 57%] Built target rdPartialCharges make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolChemicalFeatures /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target MolChemicalFeatures make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /<>/Code/GraphMol/FileParsers/ProximityBonds.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /<>/Code/GraphMol/FileParsers/SequenceParsers.cpp [ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /<>/Code/GraphMol/FileParsers/SequenceWriters.cpp make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ShapeHelpers/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdShapeHelpers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 58%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /<>/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp [ 58%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 58%] Built target rdForceFieldHelpers make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ReducedGraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target ReducedGraphs make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 58%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /<>/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp [ 59%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp [ 60%] Linking CXX shared library ../../../lib/libFileParsers.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libFileParsers.so.1 -o ../../../lib/libFileParsers.so.1.2016.03.5 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libFileParsers.so.1 ../../../lib/libFileParsers.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 60%] Built target FileParsers make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SLNParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target testSLNParse make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 60%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /<>/Code/GraphMol/SLNParse/test.cpp [ 60%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /<>/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp [ 60%] Linking CXX shared library ../../../lib/libReducedGraphs.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libReducedGraphs.so.1 -o ../../../lib/libReducedGraphs.so.1.2016.03.5 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libReducedGraphs.so.1.2016.03.5 ../../../lib/libReducedGraphs.so.1 ../../../lib/libReducedGraphs.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 60%] Built target ReducedGraphs make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SLNParse/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target rdSLNParse make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 60%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /<>/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp [ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libShapeHelpers.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 60%] Built target rdShapeHelpers make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolfiles make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /<>/Code/GraphMol/Wrap/rdmolfiles.cpp [ 60%] Linking CXX shared library ../../../lib/libMolChemicalFeatures.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libMolChemicalFeatures.so.1 -o ../../../lib/libMolChemicalFeatures.so.1.2016.03.5 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread [ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libSLNParse.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization -lboost_regex ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolChemicalFeatures.so.1.2016.03.5 ../../../lib/libMolChemicalFeatures.so.1 ../../../lib/libMolChemicalFeatures.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 60%] Built target MolChemicalFeatures make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= Scanning dependencies of target rdchem make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /<>/Code/GraphMol/Wrap/rdchem.cpp make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 60%] Built target rdSLNParse make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ForceField/UFF /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ForceField/UFF /<>/obj-aarch64-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceField make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 60%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField/UFF && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /<>/Code/ForceField/UFF/testUFFForceField.cpp [ 61%] Linking CXX executable testSLNParse cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse -rdynamic ../../../lib/libSLNParse.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_regex ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 61%] Built target testSLNParse make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DistGeom /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DistGeom /<>/obj-aarch64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeometry make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 61%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /<>/Code/DistGeom/DistGeomUtils.cpp [ 61%] Linking CXX executable testUFFForceField cd /<>/obj-aarch64-linux-gnu/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField -rdynamic ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 61%] Built target testUFFForceField make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ForceField/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ForceField/Wrap /<>/obj-aarch64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceField make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 61%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /<>/Code/ForceField/Wrap/ForceField.cpp [ 61%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /<>/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp [ 62%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /<>/Code/DistGeom/TriangleSmooth.cpp [ 62%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Table.cpp.o -c /<>/Code/GraphMol/Wrap/Table.cpp In file included from /<>/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:23:0: /<>/Code/RDBoost/python_streambuf.h: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’: /<>/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate] " returning."); ^ /<>/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept [ 62%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /<>/Code/DistGeom/DistViolationContrib.cpp [ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /<>/Code/GraphMol/Wrap/SDMolSupplier.cpp [ 63%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /<>/Code/DistGeom/ChiralViolationContrib.cpp [ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /<>/Code/GraphMol/Wrap/Atom.cpp [ 63%] Linking CXX shared library ../../lib/libDistGeometry.so cd /<>/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libDistGeometry.so.1 -o ../../lib/libDistGeometry.so.1.2016.03.5 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libEigenSolvers.so.1.2016.03.5 ../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../lib/libForceField.so.1.2016.03.5 ../../lib/libOptimizer.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libDistGeometry.so.1.2016.03.5 ../../lib/libDistGeometry.so.1 ../../lib/libDistGeometry.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 63%] Built target DistGeometry make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= Scanning dependencies of target resMolSupplierTest make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /<>/Code/GraphMol/resMolSupplierTest.cpp [ 64%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /<>/obj-aarch64-linux-gnu/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 64%] Built target rdForceField make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolTest1 make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /<>/Code/GraphMol/test1.cpp [ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /<>/Code/GraphMol/Wrap/TDTMolSupplier.cpp [ 64%] Linking CXX executable resMolSupplierTest cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest -rdynamic ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 64%] Built target resMolSupplierTest make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= Scanning dependencies of target hanoiTest make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /<>/Code/GraphMol/hanoitest.cpp [ 64%] Linking CXX executable graphmolTest1 cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 -rdynamic ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 64%] Built target graphmolTest1 make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMolOpsTest make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /<>/Code/GraphMol/molopstest.cpp [ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /<>/Code/GraphMol/Wrap/Bond.cpp [ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /<>/Code/GraphMol/Wrap/SmilesMolSupplier.cpp [ 65%] Linking CXX executable hanoiTest cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest -rdynamic ../../lib/libFileParsers.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 65%] Built target hanoiTest make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPickler make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /<>/Code/GraphMol/testPickler.cpp [ 65%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /<>/Code/GraphMol/Wrap/SmilesWriter.cpp [ 65%] Linking CXX executable graphmoltestPickler cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler -rdynamic ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 65%] Built target graphmoltestPickler make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestChirality make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 66%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /<>/Code/GraphMol/testChirality.cpp [ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /<>/Code/GraphMol/Wrap/Mol.cpp In file included from /<>/Code/GraphMol/Wrap/SmilesWriter.cpp:20:0: /<>/Code/RDBoost/python_streambuf.h: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’: /<>/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate] " returning."); ^ /<>/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept [ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /<>/Code/GraphMol/Wrap/SDWriter.cpp In file included from /<>/Code/GraphMol/Wrap/SDWriter.cpp:21:0: /<>/Code/RDBoost/python_streambuf.h: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’: /<>/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate] " returning."); ^ /<>/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept [ 68%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /<>/Code/GraphMol/Wrap/TDTWriter.cpp [ 68%] Linking CXX executable graphmoltestChirality cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality -rdynamic ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 68%] Built target graphmoltestChirality make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Depictor /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target testDepictor make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 68%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /<>/Code/GraphMol/Depictor/testDepictor.cpp [ 68%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /<>/Code/GraphMol/Wrap/Conformer.cpp In file included from /<>/Code/GraphMol/Wrap/TDTWriter.cpp:21:0: /<>/Code/RDBoost/python_streambuf.h: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’: /<>/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate] " returning."); ^ /<>/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept [ 68%] Linking CXX executable testDepictor cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor -rdynamic ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 68%] Built target testDepictor make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Depictor/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target rdDepictor make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 68%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /<>/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp [ 69%] Linking CXX executable graphmolMolOpsTest cd /<>/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest -rdynamic ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 69%] Built target graphmolMolOpsTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest1 make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/smiTest1.dir/test.cpp.o -c /<>/Code/GraphMol/SmilesParse/test.cpp [ 69%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /<>/Code/GraphMol/Wrap/PDBWriter.cpp [ 69%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /<>/Code/GraphMol/Wrap/RingInfo.cpp In file included from /<>/Code/GraphMol/Wrap/PDBWriter.cpp:20:0: /<>/Code/RDBoost/python_streambuf.h: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’: /<>/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate] " returning."); ^ /<>/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept [ 69%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 69%] Built target rdDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= Scanning dependencies of target testMolWriter make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /<>/Code/GraphMol/FileParsers/testMolWriter.cpp [ 69%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 69%] Built target rdmolfiles make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersTest1 make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /<>/Code/GraphMol/FileParsers/test1.cpp [ 69%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /<>/Code/GraphMol/Wrap/EditableMol.cpp In file included from /<>/Code/GraphMol/RDKitBase.h:20:0, from /<>/Code/GraphMol/Wrap/EditableMol.cpp:22: /<>/Code/GraphMol/Wrap/EditableMol.cpp: In destructor ‘RDKit::{anonymous}::EditableMol::~EditableMol()’: /<>/Code/RDGeneral/Invariant.h:108:11: warning: throw will always call terminate() [-Wterminate] throw inv; \ ^ /<>/Code/RDGeneral/Invariant.h:108:11: note: in definition of macro ‘PRECONDITION’ throw inv; \ ^~~ /<>/Code/RDGeneral/Invariant.h:108:11: note: in C++11 destructors default to noexcept throw inv; \ ^ /<>/Code/RDGeneral/Invariant.h:108:11: note: in definition of macro ‘PRECONDITION’ throw inv; \ ^~~ [ 70%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /<>/Code/GraphMol/Wrap/MonomerInfo.cpp [ 71%] Linking CXX executable testMolWriter cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter -rdynamic ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 71%] Built target testMolWriter make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= Scanning dependencies of target testTplParser make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing 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/<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /<>/Code/GraphMol/FileParsers/testMolSupplier.cpp [ 73%] Linking CXX executable testTplParser cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser -rdynamic ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 73%] Built target testTplParser make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers 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-c /<>/Code/GraphMol/FileParsers/testSequence.cpp [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /<>/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp [ 73%] Linking CXX executable testSequence cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence -rdynamic ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 73%] Built target testSequence make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> 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-fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /<>/Code/GraphMol/FileParsers/testMol2ToMol.cpp [ 73%] Linking CXX executable testMol2ToMol cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol -rdynamic ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 73%] Built target testMol2ToMol make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Substruct /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target testSubstructMatch make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 74%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /<>/Code/GraphMol/Substruct/test1.cpp [ 74%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 74%] Built target rdchem make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Descriptors /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= Scanning dependencies of target Descriptors make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /<>/Code/GraphMol/Descriptors/Crippen.cpp [ 74%] Linking CXX executable testMolSupplier cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier -rdynamic ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 74%] Built target testMolSupplier make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemTransforms /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testChemTransforms make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 74%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /<>/Code/GraphMol/ChemTransforms/testChemTransforms.cpp [ 74%] Linking CXX executable fileParsersTest1 cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 -rdynamic ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 74%] Built target fileParsersTest1 make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FilterCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= Scanning dependencies of target filterCatalogTest make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 74%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /<>/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /<>/Code/GraphMol/Descriptors/MolDescriptors.cpp [ 74%] Linking CXX executable testSubstructMatch cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch -rdynamic ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 74%] Built target testSubstructMatch make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FilterCatalog/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfiltercatalog make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 74%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /<>/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp [ 74%] Linking CXX executable filterCatalogTest cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest -rdynamic ../../../lib/libFilterCatalog.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 -lboost_serialization ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 74%] Built target filterCatalogTest make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FragCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testFragCatalog make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 74%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /<>/Code/GraphMol/FragCatalog/test1.cpp [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /<>/Code/GraphMol/Descriptors/MolSurf.cpp [ 74%] Linking CXX executable testChemTransforms cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms -rdynamic ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 74%] Built target testChemTransforms make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FragCatalog/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfragcatalog make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 74%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /<>/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp [ 74%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /<>/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /<>/Code/GraphMol/Descriptors/Lipinski.cpp [ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /<>/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp [ 75%] Linking CXX executable testFragCatalog cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog -rdynamic ../../../lib/libFragCatalog.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 75%] Built target testFragCatalog make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Fingerprints /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprints make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 75%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /<>/Code/GraphMol/Fingerprints/test1.cpp [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /<>/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /<>/Code/GraphMol/Descriptors/MQN.cpp [ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /<>/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp [ 75%] Linking CXX shared library ../../../lib/libDescriptors.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libDescriptors.so.1 -o ../../../lib/libDescriptors.so.1.2016.03.5 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libDescriptors.so.1 ../../../lib/libDescriptors.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 75%] Built target Descriptors make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolTransforms /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testMolTransforms make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 75%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /<>/Code/GraphMol/MolTransforms/test1.cpp [ 75%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /<>/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp [ 75%] Linking CXX executable testMolTransforms cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms -rdynamic ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 75%] Built target testMolTransforms make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolAlign/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolAlign make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 76%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /<>/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp [ 77%] Linking CXX executable testFingerprints cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro 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../../../../lib/libCatalogs.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lboost_serialization -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 78%] Built target rdfiltercatalog make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /<>/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp [ 79%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o 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../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 79%] Built target testFeatures make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ShapeHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testShapeHelpers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 79%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /<>/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp [ 80%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /<>/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp [ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libDescriptors.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 80%] Built target rdMolAlign make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testMolCatalog make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 81%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /<>/Code/GraphMol/MolCatalog/test1.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libFragCatalog.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libCatalogs.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 81%] Built target rdfragcatalog make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolCatalog/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolCatalog make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 81%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /<>/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp [ 81%] Linking CXX executable testShapeHelpers cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers -rdynamic ../../../lib/libShapeHelpers.so.1.2016.03.5 ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 81%] Built target testShapeHelpers make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolDraw2D /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= Scanning dependencies of target MolDraw2D make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /<>/Code/GraphMol/MolDraw2D/MolDraw2D.cpp [ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /<>/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp [ 81%] Linking CXX executable testMolCatalog cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog -rdynamic ../../../lib/libMolCatalog.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 81%] Built target testMolCatalog make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FMCS /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= Scanning dependencies of target FMCS make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 81%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /<>/Code/GraphMol/FMCS/FMCS.cpp [ 81%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /<>/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libMolCatalog.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libCatalogs.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 81%] Built target rdMolCatalog make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolHash /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= Scanning dependencies of target MolHash make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 81%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /<>/Code/GraphMol/MolHash/MolHash.cpp [ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /<>/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp [ 82%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /<>/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp [ 82%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /<>/Code/GraphMol/FMCS/Seed.cpp [ 82%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /<>/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp [ 83%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /<>/Code/GraphMol/MolHash/HashToString.cpp [ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libMolChemicalFeatures.so.1.2016.03.5 ../../../../lib/libCatalogs.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 83%] Built target rdMolChemicalFeatures make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MMPA /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= Scanning dependencies of target MMPA make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 83%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /<>/Code/GraphMol/MMPA/MMPA.cpp [ 83%] Linking CXX shared library ../../../lib/libMolDraw2D.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libMolDraw2D.so.1 -o ../../../lib/libMolDraw2D.so.1.2016.03.5 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolDraw2D.so.1.2016.03.5 ../../../lib/libMolDraw2D.so.1 ../../../lib/libMolDraw2D.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 83%] Built target MolDraw2D make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ReducedGraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target testReducedGraphs make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 83%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /<>/Code/GraphMol/ReducedGraphs/test1.cpp [ 83%] Linking CXX shared library ../../../lib/libMolHash.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libMolHash.so.1 -o ../../../lib/libMolHash.so.1.2016.03.5 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolHash.so.1.2016.03.5 ../../../lib/libMolHash.so.1 ../../../lib/libMolHash.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 83%] Built target MolHash make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ReducedGraphs/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target rdReducedGraphs make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 84%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /<>/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp [ 84%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /<>/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp [ 85%] Linking CXX shared library ../../../lib/libMMPA.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libMMPA.so.1 -o ../../../lib/libMMPA.so.1.2016.03.5 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMMPA.so.1.2016.03.5 ../../../lib/libMMPA.so.1 ../../../lib/libMMPA.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 85%] Built target MMPA make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolops make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /<>/Code/GraphMol/Wrap/rdmolops.cpp [ 85%] Linking CXX executable testReducedGraphs cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs -rdynamic ../../../lib/libReducedGraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 85%] Built target testReducedGraphs make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/DistGeomHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeomHelpers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 85%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /<>/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp [ 85%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libReducedGraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 85%] Built target rdReducedGraphs make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DistGeom /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DistGeom /<>/obj-aarch64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeom make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 85%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /<>/Code/DistGeom/testDistGeom.cpp [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /<>/Code/GraphMol/Wrap/MolOps.cpp [ 85%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /<>/Code/GraphMol/DistGeomHelpers/Embedder.cpp [ 86%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /<>/Code/GraphMol/FMCS/SubstructMatchCustom.cpp [ 86%] Linking CXX executable testDistGeom cd /<>/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom -rdynamic ../../lib/libDistGeometry.so.1.2016.03.5 ../../lib/libEigenSolvers.so.1.2016.03.5 ../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../lib/libForceField.so.1.2016.03.5 ../../lib/libOptimizer.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 86%] Built target testDistGeom make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DistGeom/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DistGeom/Wrap /<>/obj-aarch64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeom make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 86%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/c++ -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /<>/Code/DistGeom/Wrap/DistGeom.cpp In file included from /<>/Code/GraphMol/Wrap/MolOps.cpp:31:0: /<>/Code/RDBoost/python_streambuf.h: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’: /<>/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate] " returning."); ^ /<>/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept [ 86%] Linking CXX shared library ../../../lib/libFMCS.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script 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/<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFMCS.so.1.2016.03.5 ../../../lib/libFMCS.so.1 ../../../lib/libFMCS.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 86%] Built target FMCS make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target ChemReactions make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /<>/Code/GraphMol/ChemReactions/Reaction.cpp [ 87%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /<>/obj-aarch64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. 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-lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 87%] Built target DistGeom make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Descriptors /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target testDescriptors make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 87%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /<>/Code/GraphMol/Descriptors/test.cpp [ 87%] Linking CXX shared library ../../../lib/libDistGeomHelpers.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libDistGeomHelpers.so.1 -o ../../../lib/libDistGeomHelpers.so.1.2016.03.5 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../lib/libDistGeomHelpers.so.1 ../../../lib/libDistGeomHelpers.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 87%] Built target DistGeomHelpers [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /<>/Code/GraphMol/ChemReactions/MDLParser.cpp [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /<>/Code/GraphMol/ChemReactions/DaylightParser.cpp [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /<>/Code/GraphMol/ChemReactions/ReactionPickler.cpp [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /<>/Code/GraphMol/ChemReactions/ReactionWriter.cpp [ 89%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libMolDraw2D.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 89%] Built target rdmolops make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Descriptors/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDescriptors make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 90%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /<>/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp [ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /<>/Code/GraphMol/ChemReactions/ReactionDepict.cpp [ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /<>/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp [ 91%] Linking CXX executable testDescriptors cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors -rdynamic ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 91%] Built target testDescriptors make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /<>/Code/GraphMol/ChemReactions/ReactionUtils.cpp [ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /<>/Code/GraphMol/ChemReactions/MoleculeParser.cpp [ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /<>/Code/GraphMol/ChemReactions/ReactionRunner.cpp make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp [ 92%] Linking CXX executable testMMFFForceFieldHelpers cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers -rdynamic ../../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../../lib/libDistGeometry.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 92%] Built target testMMFFForceFieldHelpers make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make 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/<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp [ 92%] Linking CXX shared library ../../../lib/libChemReactions.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libChemReactions.so.1 -o ../../../lib/libChemReactions.so.1.2016.03.5 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libChemReactions.so.1.2016.03.5 ../../../lib/libChemReactions.so.1 ../../../lib/libChemReactions.so make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 92%] Built target ChemReactions make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/DistGeomHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeomHelpers make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /<>/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp [ 93%] Linking CXX executable testCrystalForceField cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField -rdynamic ../../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../../lib/libDistGeometry.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 93%] Built target testCrystalForceField make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/DistGeomHelpers/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target rdDistGeom make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /<>/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libDescriptors.so.1.2016.03.5 ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libFingerprints.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 93%] Built target rdMolDescriptors make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolAlign /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target testMolAlign make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /<>/Code/GraphMol/MolAlign/testMolAlign.cpp [ 94%] Linking CXX executable testUFFForceFieldHelpers cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers -rdynamic ../../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../../lib/libDistGeometry.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 94%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix 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-fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /<>/Code/GraphMol/MolDraw2D/test1.cpp [ 95%] Linking CXX executable testDistGeomHelpers cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers -rdynamic ../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 95%] Built target testDistGeomHelpers make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolDraw2D/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDraw2D make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 95%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /<>/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp [ 95%] Linking CXX executable testMolAlign cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign -rdynamic ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 95%] Built target testMolAlign make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FMCS /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= Scanning dependencies of target testFMCS make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 95%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /<>/Code/GraphMol/FMCS/testFMCS_Unit.cpp [ 96%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../../lib/libDistGeometry.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target rdDistGeom make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FMCS/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= Scanning dependencies of target rdFMCS make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 96%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC 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../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target moldraw2DTest1 make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FMCS/Test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= Scanning dependencies of target FMCStest make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 96%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /<>/Code/GraphMol/FMCS/Test/testFMCS.cpp [ 96%] Linking CXX executable testFMCS cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS -rdynamic ../../../lib/libFMCS.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target testFMCS make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends 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-Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /<>/Code/GraphMol/MolHash/testMolHash.cpp [ 96%] Linking CXX executable FMCStest cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest -rdynamic ../../../../lib/libFMCS.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libChemTransforms.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target FMCStest make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolHash/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolHash make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make 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-lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target rdFMCS make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MMPA /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= Scanning dependencies of target testMMPA make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 97%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DRDK_64BIT_BUILD 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../../../lib/libMolHash.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 97%] Built target testMolHash make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MMPA/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= Scanning dependencies of target rdMMPA make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 97%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /<>/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp [ 97%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libMolDraw2D.so.1.2016.03.5 ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 97%] Built target rdMolDraw2D make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ForceField/MMFF /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ForceField/MMFF /<>/obj-aarch64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testMMFFForceField make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 98%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/ForceField/MMFF && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /<>/Code/ForceField/MMFF/testMMFFForceField.cpp [ 98%] Linking CXX executable testMMPA cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA -rdynamic ../../../lib/libMMPA.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 98%] Built target testMMPA make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= Scanning dependencies of target testReaction make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 98%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /<>/Code/GraphMol/ChemReactions/testReaction.cpp [ 99%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libMolHash.so.1.2016.03.5 ../../../../lib/libDescriptors.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 99%] Built target rdMolHash make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testReactionFingerprints make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [100%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /<>/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp [100%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libMMPA.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libChemTransforms.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target rdMMPA make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemReactions/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target rdChemReactions make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[4]: Entering directory '/<>/obj-aarch64-linux-gnu' [100%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/python2.7 -I/<>/Code -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /<>/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp [100%] Linking CXX executable testReactionFingerprints cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints -rdynamic ../../../lib/libChemReactions.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target testReactionFingerprints [100%] Linking CXX executable testMMFFForceField cd /<>/obj-aarch64-linux-gnu/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField -rdynamic ../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target testMMFFForceField [100%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libChemReactions.so.1.2016.03.5 ../../../../lib/libChemTransforms.so.1.2016.03.5 ../../../../lib/libDescriptors.so.1.2016.03.5 ../../../../lib/libFingerprints.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target rdChemReactions [100%] Linking CXX executable testReaction cd /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction -rdynamic ../../../lib/libChemReactions.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread make[4]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target testReaction make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' (cd /<>/Code; doxygen doxygen/doxygen.config) warning: Tag `SYMBOL_CACHE_SIZE' at line 337 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 557 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 971 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `USE_INLINE_TREES' at line 1162 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1425 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1431 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/Code/GraphMol Searching for files in directory /<>/Code/GraphMol/ChemReactions Searching for files in directory /<>/Code/GraphMol/ChemTransforms Searching for files in directory /<>/Code/GraphMol/Depictor Searching for files in directory /<>/Code/GraphMol/Descriptors Searching for files in directory /<>/Code/GraphMol/DistGeomHelpers Searching for files in directory /<>/Code/GraphMol/FileParsers Searching for files in directory /<>/Code/GraphMol/FilterCatalog Searching for files in directory /<>/Code/GraphMol/Fingerprints Searching for files in directory /<>/Code/GraphMol/FMCS Searching for files in directory /<>/Code/GraphMol/FMCS/Test Searching for files in directory /<>/Code/GraphMol/ForceFieldHelpers Searching for files in directory /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF Searching for files in directory /<>/Code/GraphMol/ForceFieldHelpers/MMFF Searching for files in directory /<>/Code/GraphMol/ForceFieldHelpers/UFF Searching for files in directory /<>/Code/GraphMol/FragCatalog Searching for files in directory /<>/Code/GraphMol/libs Searching for files in directory /<>/Code/GraphMol/MMPA Searching for files in directory /<>/Code/GraphMol/MolAlign Searching for files in directory /<>/Code/GraphMol/MolCatalog Searching for files in directory /<>/Code/GraphMol/MolChemicalFeatures Searching for files in directory /<>/Code/GraphMol/MolDraw2D Searching for files in directory /<>/Code/GraphMol/MolDraw2D/QTDemo Searching for files in directory /<>/Code/GraphMol/MolDrawing Searching for files in directory /<>/Code/GraphMol/MolHash Searching for files in directory /<>/Code/GraphMol/MolTransforms Searching for files in directory /<>/Code/GraphMol/PartialCharges Searching for files in directory /<>/Code/GraphMol/ReducedGraphs Searching for files in directory /<>/Code/GraphMol/ShapeHelpers Searching for files in directory /<>/Code/GraphMol/SLNParse Searching for files in directory /<>/Code/GraphMol/SmilesParse Searching for files in directory /<>/Code/GraphMol/Subgraphs Searching for files in directory /<>/Code/GraphMol/Substruct Searching for files in directory /<>/Code/Catalogs Searching for files in directory /<>/Code/DataStructs Searching for files in directory /<>/Code/Query Searching for files in directory /<>/Code/ML Searching for files in directory /<>/Code/ML/Cluster Searching for files in directory /<>/Code/ML/Cluster/Murtagh Searching for files in directory /<>/Code/ML/Data Searching for files in directory /<>/Code/ML/InfoTheory Searching for files in directory /<>/Code/DataManip Searching for files in directory /<>/Code/DataManip/MetricMatrixCalc Searching for files in directory /<>/Code/SimDivPickers Searching for files in directory /<>/Code/RDGeneral Searching for files in directory /<>/Code/RDGeneral/hash Searching for files in directory /<>/Code/RDGeneral/hash/detail Searching for files in directory /<>/Code/RDBoost Searching for files in directory /<>/Code/DistGeom Searching for files in directory /<>/Code/ForceField Searching for files in directory /<>/Code/ForceField/MMFF Searching for files in directory /<>/Code/ForceField/UFF Searching for files in directory /<>/Code/Numerics Searching for files in directory /<>/Code/Numerics/Alignment Searching for files in directory /<>/Code/Numerics/EigenSolvers Searching for files in directory /<>/Code/Numerics/Optimizer Searching for files in directory /<>/Code/Geometry Searching for files in directory /<>/Code/Features Searching for files in directory /<>/Code/ChemicalFeatures Reading and parsing tag files Parsing files Preprocessing /<>/Code/GraphMol/Atom.h... Parsing file /<>/Code/GraphMol/Atom.h... Preprocessing /<>/Code/GraphMol/atomic_data.h... Parsing file /<>/Code/GraphMol/atomic_data.h... Preprocessing /<>/Code/GraphMol/AtomIterators.h... Parsing file /<>/Code/GraphMol/AtomIterators.h... Preprocessing /<>/Code/GraphMol/Bond.h... Parsing file /<>/Code/GraphMol/Bond.h... Preprocessing /<>/Code/GraphMol/BondIterators.h... Parsing file /<>/Code/GraphMol/BondIterators.h... Preprocessing /<>/Code/GraphMol/Canon.h... Parsing file /<>/Code/GraphMol/Canon.h... Preprocessing /<>/Code/GraphMol/ChemReactions/Reaction.h... Parsing file /<>/Code/GraphMol/ChemReactions/Reaction.h... Preprocessing /<>/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Parsing file /<>/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Preprocessing /<>/Code/GraphMol/ChemReactions/ReactionParser.h... Parsing file /<>/Code/GraphMol/ChemReactions/ReactionParser.h... Preprocessing /<>/Code/GraphMol/ChemReactions/ReactionPickler.h... Parsing file /<>/Code/GraphMol/ChemReactions/ReactionPickler.h... Preprocessing /<>/Code/GraphMol/ChemReactions/ReactionRunner.h... Parsing file /<>/Code/GraphMol/ChemReactions/ReactionRunner.h... Preprocessing /<>/Code/GraphMol/ChemReactions/ReactionUtils.h... Parsing file /<>/Code/GraphMol/ChemReactions/ReactionUtils.h... Preprocessing /<>/Code/GraphMol/ChemTransforms/ChemTransforms.h... Parsing file /<>/Code/GraphMol/ChemTransforms/ChemTransforms.h... Preprocessing /<>/Code/GraphMol/ChemTransforms/MolFragmenter.h... Parsing file /<>/Code/GraphMol/ChemTransforms/MolFragmenter.h... Preprocessing /<>/Code/GraphMol/Chirality.h... Parsing file /<>/Code/GraphMol/Chirality.h... Preprocessing /<>/Code/GraphMol/Conformer.h... Parsing file /<>/Code/GraphMol/Conformer.h... Preprocessing /<>/Code/GraphMol/Depictor/DepictUtils.h... Parsing file /<>/Code/GraphMol/Depictor/DepictUtils.h... Preprocessing /<>/Code/GraphMol/Depictor/EmbeddedFrag.h... Parsing file /<>/Code/GraphMol/Depictor/EmbeddedFrag.h... Preprocessing /<>/Code/GraphMol/Depictor/RDDepictor.h... Parsing file /<>/Code/GraphMol/Depictor/RDDepictor.h... Preprocessing /<>/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Parsing file /<>/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Preprocessing /<>/Code/GraphMol/Descriptors/Crippen.h... Parsing file /<>/Code/GraphMol/Descriptors/Crippen.h... Preprocessing /<>/Code/GraphMol/Descriptors/Lipinski.h... Parsing file /<>/Code/GraphMol/Descriptors/Lipinski.h... Preprocessing /<>/Code/GraphMol/Descriptors/MolDescriptors.h... Parsing file /<>/Code/GraphMol/Descriptors/MolDescriptors.h... Preprocessing /<>/Code/GraphMol/Descriptors/MolSurf.h... Parsing file /<>/Code/GraphMol/Descriptors/MolSurf.h... Preprocessing /<>/Code/GraphMol/Descriptors/MQN.h... Parsing file /<>/Code/GraphMol/Descriptors/MQN.h... Preprocessing /<>/Code/GraphMol/details.h... Parsing file /<>/Code/GraphMol/details.h... Preprocessing /<>/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Parsing file /<>/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Preprocessing /<>/Code/GraphMol/DistGeomHelpers/Embedder.h... Parsing file /<>/Code/GraphMol/DistGeomHelpers/Embedder.h... Preprocessing /<>/Code/GraphMol/FileParsers/FileParsers.h... Parsing file /<>/Code/GraphMol/FileParsers/FileParsers.h... Preprocessing /<>/Code/GraphMol/FileParsers/FileParserUtils.h... Parsing file /<>/Code/GraphMol/FileParsers/FileParserUtils.h... Preprocessing /<>/Code/GraphMol/FileParsers/MolFileStereochem.h... Parsing file /<>/Code/GraphMol/FileParsers/MolFileStereochem.h... Preprocessing /<>/Code/GraphMol/FileParsers/MolSupplier.h... Parsing file /<>/Code/GraphMol/FileParsers/MolSupplier.h... Preprocessing /<>/Code/GraphMol/FileParsers/MolWriters.h... Parsing file /<>/Code/GraphMol/FileParsers/MolWriters.h... Preprocessing /<>/Code/GraphMol/FileParsers/ProximityBonds.h... Parsing file /<>/Code/GraphMol/FileParsers/ProximityBonds.h... Preprocessing /<>/Code/GraphMol/FileParsers/SequenceParsers.h... Parsing file /<>/Code/GraphMol/FileParsers/SequenceParsers.h... Preprocessing /<>/Code/GraphMol/FileParsers/SequenceWriters.h... Parsing file /<>/Code/GraphMol/FileParsers/SequenceWriters.h... Preprocessing /<>/Code/GraphMol/FilterCatalog/FilterCatalog.h... Parsing file /<>/Code/GraphMol/FilterCatalog/FilterCatalog.h... Preprocessing /<>/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Parsing file /<>/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Preprocessing /<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Parsing file /<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Preprocessing /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h... Parsing file /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h... Preprocessing /<>/Code/GraphMol/FilterCatalog/Filters.h... Parsing file /<>/Code/GraphMol/FilterCatalog/Filters.h... Preprocessing /<>/Code/GraphMol/Fingerprints/AtomPairs.h... Parsing file /<>/Code/GraphMol/Fingerprints/AtomPairs.h... Preprocessing /<>/Code/GraphMol/Fingerprints/Fingerprints.h... Parsing file /<>/Code/GraphMol/Fingerprints/Fingerprints.h... Preprocessing /<>/Code/GraphMol/Fingerprints/MACCS.h... Parsing file /<>/Code/GraphMol/Fingerprints/MACCS.h... Preprocessing /<>/Code/GraphMol/Fingerprints/MorganFingerprints.h... Parsing file /<>/Code/GraphMol/Fingerprints/MorganFingerprints.h... Preprocessing /<>/Code/GraphMol/FMCS/Composition2N.h... Parsing file /<>/Code/GraphMol/FMCS/Composition2N.h... Preprocessing /<>/Code/GraphMol/FMCS/DebugTrace.h... Parsing file /<>/Code/GraphMol/FMCS/DebugTrace.h... Preprocessing /<>/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Parsing file /<>/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Preprocessing /<>/Code/GraphMol/FMCS/FMCS.h... Parsing file /<>/Code/GraphMol/FMCS/FMCS.h... Preprocessing /<>/Code/GraphMol/FMCS/Graph.h... Parsing file /<>/Code/GraphMol/FMCS/Graph.h... Preprocessing /<>/Code/GraphMol/FMCS/MatchTable.h... Parsing file /<>/Code/GraphMol/FMCS/MatchTable.h... Preprocessing /<>/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Parsing file /<>/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Preprocessing /<>/Code/GraphMol/FMCS/RingMatchTableSet.h... Parsing file /<>/Code/GraphMol/FMCS/RingMatchTableSet.h... Preprocessing /<>/Code/GraphMol/FMCS/Seed.h... Parsing file /<>/Code/GraphMol/FMCS/Seed.h... Preprocessing /<>/Code/GraphMol/FMCS/SeedSet.h... Parsing file /<>/Code/GraphMol/FMCS/SeedSet.h... Preprocessing /<>/Code/GraphMol/FMCS/SubstructMatchCustom.h... Parsing file /<>/Code/GraphMol/FMCS/SubstructMatchCustom.h... Preprocessing /<>/Code/GraphMol/FMCS/SubstructureCache.h... Parsing file /<>/Code/GraphMol/FMCS/SubstructureCache.h... Preprocessing /<>/Code/GraphMol/FMCS/Target.h... Parsing file /<>/Code/GraphMol/FMCS/Target.h... Preprocessing /<>/Code/GraphMol/FMCS/TargetMatch.h... Parsing file /<>/Code/GraphMol/FMCS/TargetMatch.h... Preprocessing /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Parsing file /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Preprocessing /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Parsing file /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Preprocessing /<>/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Parsing file /<>/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Preprocessing /<>/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Parsing file /<>/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Preprocessing /<>/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Parsing file /<>/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Preprocessing /<>/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Parsing file /<>/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Preprocessing /<>/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Parsing file /<>/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Preprocessing /<>/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Parsing file /<>/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Preprocessing /<>/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Parsing file /<>/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Preprocessing /<>/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Parsing file /<>/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Preprocessing /<>/Code/GraphMol/FragCatalog/FragCatGenerator.h... Parsing file /<>/Code/GraphMol/FragCatalog/FragCatGenerator.h... Preprocessing /<>/Code/GraphMol/FragCatalog/FragCatParams.h... Parsing file /<>/Code/GraphMol/FragCatalog/FragCatParams.h... Preprocessing /<>/Code/GraphMol/FragCatalog/FragFPGenerator.h... Parsing file /<>/Code/GraphMol/FragCatalog/FragFPGenerator.h... Preprocessing /<>/Code/GraphMol/GraphMol.h... Parsing file /<>/Code/GraphMol/GraphMol.h... Preprocessing /<>/Code/GraphMol/MMPA/MMPA.h... Parsing file /<>/Code/GraphMol/MMPA/MMPA.h... Preprocessing /<>/Code/GraphMol/MolAlign/AlignMolecules.h... Parsing file /<>/Code/GraphMol/MolAlign/AlignMolecules.h... Preprocessing /<>/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Parsing file /<>/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Preprocessing /<>/Code/GraphMol/MolCatalog/MolCatalog.h... Parsing file /<>/Code/GraphMol/MolCatalog/MolCatalog.h... Preprocessing /<>/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Parsing file /<>/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Preprocessing /<>/Code/GraphMol/MolCatalog/MolCatalogParams.h... Parsing file /<>/Code/GraphMol/MolCatalog/MolCatalogParams.h... Preprocessing /<>/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Parsing file /<>/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Preprocessing /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Parsing file /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Preprocessing /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Parsing file /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Preprocessing /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Parsing file /<>/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Preprocessing /<>/Code/GraphMol/MolDraw2D/MolDraw2D.h... Parsing file /<>/Code/GraphMol/MolDraw2D/MolDraw2D.h... Preprocessing /<>/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Parsing file /<>/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Preprocessing /<>/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Parsing file /<>/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Preprocessing /<>/Code/GraphMol/MolDraw2D/MolDraw2DQt.h... Parsing file /<>/Code/GraphMol/MolDraw2D/MolDraw2DQt.h... Preprocessing /<>/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Parsing file /<>/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Preprocessing /<>/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Parsing file /<>/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Preprocessing /<>/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Parsing file /<>/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Preprocessing /<>/Code/GraphMol/MolDrawing/DrawingToCairo.h... Parsing file /<>/Code/GraphMol/MolDrawing/DrawingToCairo.h... Preprocessing /<>/Code/GraphMol/MolDrawing/DrawingToSVG.h... Parsing file /<>/Code/GraphMol/MolDrawing/DrawingToSVG.h... Preprocessing /<>/Code/GraphMol/MolDrawing/MolDrawing.h... Parsing file /<>/Code/GraphMol/MolDrawing/MolDrawing.h... Preprocessing /<>/Code/GraphMol/MolHash/MolHash.h... Parsing file /<>/Code/GraphMol/MolHash/MolHash.h... Preprocessing /<>/Code/GraphMol/MolOps.h... Parsing file /<>/Code/GraphMol/MolOps.h... Preprocessing /<>/Code/GraphMol/MolPickler.h... Parsing file /<>/Code/GraphMol/MolPickler.h... Preprocessing /<>/Code/GraphMol/MolTransforms/MolTransforms.h... Parsing file /<>/Code/GraphMol/MolTransforms/MolTransforms.h... Preprocessing /<>/Code/GraphMol/MonomerInfo.h... Parsing file /<>/Code/GraphMol/MonomerInfo.h... Preprocessing /<>/Code/GraphMol/new_canon.h... Parsing file /<>/Code/GraphMol/new_canon.h... Preprocessing /<>/Code/GraphMol/PartialCharges/GasteigerCharges.h... Parsing file /<>/Code/GraphMol/PartialCharges/GasteigerCharges.h... Preprocessing /<>/Code/GraphMol/PartialCharges/GasteigerParams.h... Parsing file /<>/Code/GraphMol/PartialCharges/GasteigerParams.h... Preprocessing /<>/Code/GraphMol/PeriodicTable.h... Parsing file /<>/Code/GraphMol/PeriodicTable.h... Preprocessing /<>/Code/GraphMol/QueryAtom.h... Parsing file /<>/Code/GraphMol/QueryAtom.h... Preprocessing /<>/Code/GraphMol/QueryBond.h... Parsing file /<>/Code/GraphMol/QueryBond.h... Preprocessing /<>/Code/GraphMol/QueryOps.h... Parsing file /<>/Code/GraphMol/QueryOps.h... Preprocessing /<>/Code/GraphMol/RDKitBase.h... Parsing file /<>/Code/GraphMol/RDKitBase.h... Preprocessing /<>/Code/GraphMol/RDKitQueries.h... Parsing file /<>/Code/GraphMol/RDKitQueries.h... Preprocessing /<>/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Parsing file /<>/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Preprocessing /<>/Code/GraphMol/Resonance.h... Parsing file /<>/Code/GraphMol/Resonance.h... Preprocessing /<>/Code/GraphMol/RingInfo.h... Parsing file /<>/Code/GraphMol/RingInfo.h... Preprocessing /<>/Code/GraphMol/Rings.h... Parsing file /<>/Code/GraphMol/Rings.h... Preprocessing /<>/Code/GraphMol/ROMol.h... Parsing file /<>/Code/GraphMol/ROMol.h... Preprocessing /<>/Code/GraphMol/RWMol.h... Parsing file /<>/Code/GraphMol/RWMol.h... Preprocessing /<>/Code/GraphMol/SanitException.h... Parsing file /<>/Code/GraphMol/SanitException.h... Preprocessing /<>/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Parsing file /<>/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Preprocessing /<>/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Parsing file /<>/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Preprocessing /<>/Code/GraphMol/SLNParse/SLNAttribs.h... Parsing file /<>/Code/GraphMol/SLNParse/SLNAttribs.h... Preprocessing /<>/Code/GraphMol/SLNParse/SLNParse.h... Parsing file /<>/Code/GraphMol/SLNParse/SLNParse.h... Preprocessing /<>/Code/GraphMol/SLNParse/SLNParseOps.h... Parsing file /<>/Code/GraphMol/SLNParse/SLNParseOps.h... Preprocessing /<>/Code/GraphMol/SmilesParse/primes.h... Parsing file /<>/Code/GraphMol/SmilesParse/primes.h... Preprocessing /<>/Code/GraphMol/SmilesParse/SmartsWrite.h... Parsing file /<>/Code/GraphMol/SmilesParse/SmartsWrite.h... Preprocessing /<>/Code/GraphMol/SmilesParse/SmilesParse.h... Parsing file /<>/Code/GraphMol/SmilesParse/SmilesParse.h... Preprocessing /<>/Code/GraphMol/SmilesParse/SmilesParseOps.h... Parsing file /<>/Code/GraphMol/SmilesParse/SmilesParseOps.h... Preprocessing /<>/Code/GraphMol/SmilesParse/SmilesWrite.h... Parsing file /<>/Code/GraphMol/SmilesParse/SmilesWrite.h... Preprocessing /<>/Code/GraphMol/Subgraphs/Subgraphs.h... Parsing file /<>/Code/GraphMol/Subgraphs/Subgraphs.h... Preprocessing /<>/Code/GraphMol/Subgraphs/SubgraphUtils.h... Parsing file /<>/Code/GraphMol/Subgraphs/SubgraphUtils.h... Preprocessing /<>/Code/GraphMol/Substruct/SubstructMatch.h... Parsing file /<>/Code/GraphMol/Substruct/SubstructMatch.h... Preprocessing /<>/Code/GraphMol/Substruct/SubstructUtils.h... Parsing file /<>/Code/GraphMol/Substruct/SubstructUtils.h... Preprocessing /<>/Code/Catalogs/Catalog.h... Parsing file /<>/Code/Catalogs/Catalog.h... Preprocessing /<>/Code/Catalogs/CatalogEntry.h... Parsing file /<>/Code/Catalogs/CatalogEntry.h... Preprocessing /<>/Code/Catalogs/CatalogParams.h... Parsing file /<>/Code/Catalogs/CatalogParams.h... Preprocessing /<>/Code/DataStructs/base64.h... Parsing file /<>/Code/DataStructs/base64.h... Preprocessing /<>/Code/DataStructs/BitOps.h... Parsing file /<>/Code/DataStructs/BitOps.h... Preprocessing /<>/Code/DataStructs/BitVect.h... Parsing file /<>/Code/DataStructs/BitVect.h... Preprocessing /<>/Code/DataStructs/BitVects.h... Parsing file /<>/Code/DataStructs/BitVects.h... Preprocessing /<>/Code/DataStructs/BitVectUtils.h... Parsing file /<>/Code/DataStructs/BitVectUtils.h... Preprocessing /<>/Code/DataStructs/DatastructsException.h... Parsing file /<>/Code/DataStructs/DatastructsException.h... Preprocessing /<>/Code/DataStructs/DiscreteDistMat.h... Parsing file /<>/Code/DataStructs/DiscreteDistMat.h... Preprocessing /<>/Code/DataStructs/DiscreteValueVect.h... Parsing file /<>/Code/DataStructs/DiscreteValueVect.h... Preprocessing /<>/Code/DataStructs/ExplicitBitVect.h... Parsing file /<>/Code/DataStructs/ExplicitBitVect.h... Preprocessing /<>/Code/DataStructs/FPBReader.h... Parsing file /<>/Code/DataStructs/FPBReader.h... Preprocessing /<>/Code/DataStructs/SparseBitVect.h... Parsing file /<>/Code/DataStructs/SparseBitVect.h... Preprocessing /<>/Code/DataStructs/SparseIntVect.h... Parsing file /<>/Code/DataStructs/SparseIntVect.h... Preprocessing /<>/Code/Query/AndQuery.h... Parsing file /<>/Code/Query/AndQuery.h... Preprocessing /<>/Code/Query/EqualityQuery.h... Parsing file /<>/Code/Query/EqualityQuery.h... Preprocessing /<>/Code/Query/GreaterEqualQuery.h... Parsing file /<>/Code/Query/GreaterEqualQuery.h... Preprocessing /<>/Code/Query/GreaterQuery.h... Parsing file /<>/Code/Query/GreaterQuery.h... Preprocessing /<>/Code/Query/LessEqualQuery.h... Parsing file /<>/Code/Query/LessEqualQuery.h... Preprocessing /<>/Code/Query/LessQuery.h... Parsing file /<>/Code/Query/LessQuery.h... Preprocessing /<>/Code/Query/OrQuery.h... Parsing file /<>/Code/Query/OrQuery.h... Preprocessing /<>/Code/Query/Query.h... Parsing file /<>/Code/Query/Query.h... Preprocessing /<>/Code/Query/QueryObjects.h... Parsing file /<>/Code/Query/QueryObjects.h... Preprocessing /<>/Code/Query/RangeQuery.h... Parsing file /<>/Code/Query/RangeQuery.h... Preprocessing /<>/Code/Query/SetQuery.h... Parsing file /<>/Code/Query/SetQuery.h... Preprocessing /<>/Code/Query/XOrQuery.h... Parsing file /<>/Code/Query/XOrQuery.h... Preprocessing /<>/Code/ML/InfoTheory/CorrMatGenerator.h... Parsing file /<>/Code/ML/InfoTheory/CorrMatGenerator.h... Preprocessing /<>/Code/ML/InfoTheory/InfoBitRanker.h... Parsing file /<>/Code/ML/InfoTheory/InfoBitRanker.h... Preprocessing /<>/Code/ML/InfoTheory/InfoGainFuncs.h... Parsing file /<>/Code/ML/InfoTheory/InfoGainFuncs.h... Preprocessing /<>/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Parsing file /<>/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Preprocessing /<>/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Parsing file /<>/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Preprocessing /<>/Code/SimDivPickers/DistPicker.h... Parsing file /<>/Code/SimDivPickers/DistPicker.h... Preprocessing /<>/Code/SimDivPickers/HierarchicalClusterPicker.h... Parsing file /<>/Code/SimDivPickers/HierarchicalClusterPicker.h... Preprocessing /<>/Code/SimDivPickers/MaxMinPicker.h... Parsing file /<>/Code/SimDivPickers/MaxMinPicker.h... Preprocessing /<>/Code/RDGeneral/BadFileException.h... Parsing file /<>/Code/RDGeneral/BadFileException.h... Preprocessing /<>/Code/RDGeneral/BoostEndInclude.h... Parsing file /<>/Code/RDGeneral/BoostEndInclude.h... Preprocessing /<>/Code/RDGeneral/BoostStartInclude.h... Parsing file /<>/Code/RDGeneral/BoostStartInclude.h... Preprocessing /<>/Code/RDGeneral/Dict.h... Parsing file /<>/Code/RDGeneral/Dict.h... Preprocessing /<>/Code/RDGeneral/Exceptions.h... Parsing file /<>/Code/RDGeneral/Exceptions.h... Preprocessing /<>/Code/RDGeneral/FileParseException.h... Parsing file /<>/Code/RDGeneral/FileParseException.h... Preprocessing /<>/Code/RDGeneral/hanoiSort.h... Parsing file /<>/Code/RDGeneral/hanoiSort.h... Preprocessing /<>/Code/RDGeneral/Invariant.h... Parsing file /<>/Code/RDGeneral/Invariant.h... Preprocessing /<>/Code/RDGeneral/LocaleSwitcher.h... Parsing file /<>/Code/RDGeneral/LocaleSwitcher.h... Preprocessing /<>/Code/RDGeneral/Ranking.h... Parsing file /<>/Code/RDGeneral/Ranking.h... Preprocessing /<>/Code/RDGeneral/RDLog.h... Parsing file /<>/Code/RDGeneral/RDLog.h... Preprocessing /<>/Code/RDGeneral/RDThreads.h... Parsing file /<>/Code/RDGeneral/RDThreads.h... Preprocessing /<>/Code/RDGeneral/StreamOps.h... Parsing file /<>/Code/RDGeneral/StreamOps.h... Preprocessing /<>/Code/RDGeneral/types.h... Parsing file /<>/Code/RDGeneral/types.h... Preprocessing /<>/Code/RDGeneral/utils.h... Parsing file /<>/Code/RDGeneral/utils.h... Preprocessing /<>/Code/RDGeneral/versions.h... Parsing file /<>/Code/RDGeneral/versions.h... Preprocessing /<>/Code/RDBoost/import_array.h... Parsing file /<>/Code/RDBoost/import_array.h... Preprocessing /<>/Code/RDBoost/iterator_next.h... Parsing file /<>/Code/RDBoost/iterator_next.h... Preprocessing /<>/Code/RDBoost/pyint_api.h... Parsing file /<>/Code/RDBoost/pyint_api.h... Preprocessing /<>/Code/RDBoost/PySequenceHolder.h... Parsing file /<>/Code/RDBoost/PySequenceHolder.h... Preprocessing /<>/Code/RDBoost/python.h... Parsing file /<>/Code/RDBoost/python.h... Preprocessing /<>/Code/RDBoost/python_streambuf.h... Parsing file /<>/Code/RDBoost/python_streambuf.h... Preprocessing /<>/Code/DistGeom/BoundsMatrix.h... Parsing file /<>/Code/DistGeom/BoundsMatrix.h... Preprocessing /<>/Code/DistGeom/ChiralSet.h... Parsing file /<>/Code/DistGeom/ChiralSet.h... Preprocessing /<>/Code/DistGeom/ChiralViolationContrib.h... Parsing file /<>/Code/DistGeom/ChiralViolationContrib.h... Preprocessing /<>/Code/DistGeom/DistGeomUtils.h... Parsing file /<>/Code/DistGeom/DistGeomUtils.h... Preprocessing /<>/Code/DistGeom/DistViolationContrib.h... Parsing file /<>/Code/DistGeom/DistViolationContrib.h... Preprocessing /<>/Code/DistGeom/FourthDimContrib.h... Parsing file /<>/Code/DistGeom/FourthDimContrib.h... Preprocessing /<>/Code/DistGeom/TriangleSmooth.h... Parsing file /<>/Code/DistGeom/TriangleSmooth.h... Preprocessing /<>/Code/ForceField/Contrib.h... Parsing file /<>/Code/ForceField/Contrib.h... Preprocessing /<>/Code/ForceField/ForceField.h... Parsing file /<>/Code/ForceField/ForceField.h... Preprocessing /<>/Code/ForceField/MMFF/AngleBend.h... Parsing file /<>/Code/ForceField/MMFF/AngleBend.h... Preprocessing /<>/Code/ForceField/MMFF/AngleConstraint.h... Parsing file /<>/Code/ForceField/MMFF/AngleConstraint.h... Preprocessing /<>/Code/ForceField/MMFF/BondStretch.h... Parsing file /<>/Code/ForceField/MMFF/BondStretch.h... Preprocessing /<>/Code/ForceField/MMFF/Contribs.h... Parsing file /<>/Code/ForceField/MMFF/Contribs.h... Preprocessing /<>/Code/ForceField/MMFF/DistanceConstraint.h... Parsing file /<>/Code/ForceField/MMFF/DistanceConstraint.h... Preprocessing /<>/Code/ForceField/MMFF/Nonbonded.h... Parsing file /<>/Code/ForceField/MMFF/Nonbonded.h... Preprocessing /<>/Code/ForceField/MMFF/OopBend.h... Parsing file /<>/Code/ForceField/MMFF/OopBend.h... Preprocessing /<>/Code/ForceField/MMFF/Params.h... Parsing file /<>/Code/ForceField/MMFF/Params.h... Preprocessing /<>/Code/ForceField/MMFF/PositionConstraint.h... Parsing file /<>/Code/ForceField/MMFF/PositionConstraint.h... Preprocessing /<>/Code/ForceField/MMFF/StretchBend.h... Parsing file /<>/Code/ForceField/MMFF/StretchBend.h... Preprocessing /<>/Code/ForceField/MMFF/TorsionAngle.h... Parsing file /<>/Code/ForceField/MMFF/TorsionAngle.h... Preprocessing /<>/Code/ForceField/MMFF/TorsionConstraint.h... Parsing file /<>/Code/ForceField/MMFF/TorsionConstraint.h... Preprocessing /<>/Code/ForceField/UFF/AngleBend.h... Parsing file /<>/Code/ForceField/UFF/AngleBend.h... Preprocessing /<>/Code/ForceField/UFF/AngleConstraint.h... Parsing file /<>/Code/ForceField/UFF/AngleConstraint.h... Preprocessing /<>/Code/ForceField/UFF/BondStretch.h... Parsing file /<>/Code/ForceField/UFF/BondStretch.h... Preprocessing /<>/Code/ForceField/UFF/Contribs.h... Parsing file /<>/Code/ForceField/UFF/Contribs.h... Preprocessing /<>/Code/ForceField/UFF/DistanceConstraint.h... Parsing file /<>/Code/ForceField/UFF/DistanceConstraint.h... Preprocessing /<>/Code/ForceField/UFF/Inversion.h... Parsing file /<>/Code/ForceField/UFF/Inversion.h... Preprocessing /<>/Code/ForceField/UFF/Nonbonded.h... Parsing file /<>/Code/ForceField/UFF/Nonbonded.h... Preprocessing /<>/Code/ForceField/UFF/Params.h... Parsing file /<>/Code/ForceField/UFF/Params.h... Preprocessing /<>/Code/ForceField/UFF/PositionConstraint.h... Parsing file /<>/Code/ForceField/UFF/PositionConstraint.h... Preprocessing /<>/Code/ForceField/UFF/TorsionAngle.h... Parsing file /<>/Code/ForceField/UFF/TorsionAngle.h... Preprocessing /<>/Code/ForceField/UFF/TorsionConstraint.h... Parsing file /<>/Code/ForceField/UFF/TorsionConstraint.h... Preprocessing /<>/Code/Numerics/Alignment/AlignPoints.h... Parsing file /<>/Code/Numerics/Alignment/AlignPoints.h... Preprocessing /<>/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Parsing file /<>/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Preprocessing /<>/Code/Numerics/Matrix.h... Parsing file /<>/Code/Numerics/Matrix.h... Preprocessing /<>/Code/Numerics/Optimizer/BFGSOpt.h... Parsing file /<>/Code/Numerics/Optimizer/BFGSOpt.h... Preprocessing /<>/Code/Numerics/SquareMatrix.h... Parsing file /<>/Code/Numerics/SquareMatrix.h... Preprocessing /<>/Code/Numerics/SymmMatrix.h... Parsing file /<>/Code/Numerics/SymmMatrix.h... Preprocessing /<>/Code/Numerics/Vector.h... Parsing file /<>/Code/Numerics/Vector.h... Preprocessing /<>/Code/Geometry/Grid3D.h... Parsing file /<>/Code/Geometry/Grid3D.h... Preprocessing /<>/Code/Geometry/GridUtils.h... Parsing file /<>/Code/Geometry/GridUtils.h... Preprocessing /<>/Code/Geometry/point.h... Parsing file /<>/Code/Geometry/point.h... Preprocessing /<>/Code/Geometry/Transform.h... /<>/Code/ForceField/MMFF/Contribs.h:14: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files: /<>/Code/ForceField/MMFF/Contribs.h /<>/Code/ForceField/UFF/Contribs.h Please use a more specific name by including a (larger) part of the path! /<>/Code/ForceField/UFF/Contribs.h:12: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files: /<>/Code/ForceField/MMFF/Contribs.h /<>/Code/ForceField/UFF/Contribs.h Please use a more specific name by including a (larger) part of the path! /<>/Code/GraphMol/Bond.h:356: warning: Found unknown command `\Overload' Parsing file /<>/Code/Geometry/Transform.h... Preprocessing /<>/Code/Geometry/Transform2D.h... Parsing file /<>/Code/Geometry/Transform2D.h... Preprocessing /<>/Code/Geometry/Transform3D.h... Parsing file /<>/Code/Geometry/Transform3D.h... Preprocessing /<>/Code/Geometry/UniformGrid3D.h... Parsing file /<>/Code/Geometry/UniformGrid3D.h... Preprocessing /<>/Code/Geometry/Utils.h... Parsing file /<>/Code/Geometry/Utils.h... Preprocessing /<>/Code/Features/Feature.h... Parsing file /<>/Code/Features/Feature.h... Preprocessing /<>/Code/ChemicalFeatures/ChemicalFeature.h... Parsing file /<>/Code/ChemicalFeatures/ChemicalFeature.h... Preprocessing /<>/Code/ChemicalFeatures/FreeChemicalFeature.h... Parsing file /<>/Code/ChemicalFeatures/FreeChemicalFeature.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file AlignMolecules.h... Generating code for file AlignPoints.h... Generating code for file AndQuery.h... Generating code for file AngleBend.h... Generating code for file AngleBend.h... Generating code for file AngleConstraint.h... Generating code for file AngleConstraint.h... Generating code for file Atom.h... Generating code for file atomic_data.h... Generating code for file AtomIterators.h... Generating code for file AtomPairs.h... Generating code for file AtomTyper.h... Generating code for file AtomTyper.h... Generating code for file BadFileException.h... Generating code for file base64.h... Generating code for file BFGSOpt.h... Generating code for file BitOps.h... Generating code for file BitVect.h... Generating code for file BitVects.h... Generating code for file BitVectUtils.h... Generating code for file Bond.h... Generating code for file BondIterators.h... Generating code for file BondStretch.h... Generating code for file BondStretch.h... Generating code for file BoostEndInclude.h... Generating code for file BoostStartInclude.h... Generating code for file BoundsMatrix.h... Generating code for file BoundsMatrixBuilder.h... Generating code for file Builder.h... Generating code for file Builder.h... Generating code for file Canon.h... Generating code for file Catalog.h... Generating code for file CatalogEntry.h... Generating code for file CatalogParams.h... Generating code for file ChemicalFeature.h... Generating code for file ChemTransforms.h... Generating code for file Chirality.h... Generating code for file ChiralSet.h... Generating code for file ChiralViolationContrib.h... Generating code for file Composition2N.h... Generating code for file Conformer.h... Generating code for file ConnectivityDescriptors.h... Generating code for file Contrib.h... Generating code for file Contribs.h... Generating code for file Contribs.h... Generating code for file CorrMatGenerator.h... Generating code for file Crippen.h... Generating code for file DatastructsException.h... Generating code for file DebugTrace.h... Generating code for file DepictUtils.h... Generating code for file details.h... Generating code for file Dict.h... Generating code for file DiscreteDistMat.h... Generating code for file DiscreteValueVect.h... Generating code for file DistanceConstraint.h... Generating code for file DistanceConstraint.h... Generating code for file DistGeomUtils.h... Generating code for file DistPicker.h... Generating code for file DistViolationContrib.h... Generating code for file DrawingToCairo.h... Generating code for file DrawingToSVG.h... Generating code for file DuplicatedSeedCache.h... Generating code for file EmbeddedFrag.h... Generating code for file Embedder.h... Generating code for file EqualityQuery.h... Generating code for file Exceptions.h... Generating code for file ExplicitBitVect.h... Generating code for file Feature.h... Generating code for file FeatureParser.h... Generating code for file FileParseException.h... Generating code for file FileParsers.h... Generating code for file FileParserUtils.h... Generating code for file FilterCatalog.h... Generating code for file FilterCatalogEntry.h... Generating code for file FilterMatcherBase.h... Generating code for file FilterMatchers.h... Generating code for file Filters.h... Generating code for file Fingerprints.h... Generating code for file FMCS.h... Generating code for file ForceField.h... Generating code for file FourthDimContrib.h... Generating code for file FPBReader.h... Generating code for file FragCatalogEntry.h... Generating code for file FragCatalogUtils.h... Generating code for file FragCatGenerator.h... Generating code for file FragCatParams.h... Generating code for file FragFPGenerator.h... Generating code for file FreeChemicalFeature.h... Generating code for file GasteigerCharges.h... Generating code for file GasteigerParams.h... Generating code for file Graph.h... Generating code for file GraphMol.h... Generating code for file GreaterEqualQuery.h... Generating code for file GreaterQuery.h... Generating code for file Grid3D.h... Generating code for file GridUtils.h... Generating code for file hanoiSort.h... Generating code for file HierarchicalClusterPicker.h... Generating code for file import_array.h... Generating code for file InfoBitRanker.h... Generating code for file InfoGainFuncs.h... Generating code for file Invariant.h... Generating code for file Inversion.h... Generating code for file iterator_next.h... Generating code for file LessEqualQuery.h... Generating code for file LessQuery.h... Generating code for file Lipinski.h... Generating code for file LocaleSwitcher.h... Generating code for file MACCS.h... Generating code for file MatchTable.h... Generating code for file Matrix.h... Generating code for file MaximumCommonSubgraph.h... Generating code for file MaxMinPicker.h... Generating code for file MetricFuncs.h... Generating code for file MetricMatrixCalc.h... Generating code for file MMFF.h... Generating code for file MMPA.h... Generating code for file MolCatalog.h... Generating code for file MolCatalogEntry.h... Generating code for file MolCatalogParams.h... Generating code for file MolChemicalFeature.h... Generating code for file MolChemicalFeatureDef.h... Generating code for file MolChemicalFeatureFactory.h... Generating code for file MolDescriptors.h... Generating code for file MolDraw2D.h... Generating code for file MolDraw2DCairo.h... Generating code for file MolDraw2DDetails.h... Generating code for file MolDraw2DQt.h... Generating code for file MolDraw2DSVG.h... Generating code for file MolDraw2DUtils.h... Generating code for file MolDraw2Dwx.h... Generating code for file MolDrawing.h... Generating code for file MolFileStereochem.h... Generating code for file MolFragmenter.h... Generating code for file MolHash.h... Generating code for file MolOps.h... Generating code for file MolPickler.h... Generating code for file MolSupplier.h... Generating code for file MolSurf.h... Generating code for file MolTransforms.h... Generating code for file MolWriters.h... Generating code for file MonomerInfo.h... Generating code for file MorganFingerprints.h... Generating code for file MQN.h... Generating code for file new_canon.h... Generating code for file Nonbonded.h... Generating code for file Nonbonded.h... Generating code for file O3AAlignMolecules.h... Generating code for file OopBend.h... Generating code for file OrQuery.h... Generating code for file Params.h... Generating code for file Params.h... Generating code for file PeriodicTable.h... Generating code for file point.h... Generating code for file PositionConstraint.h... Generating code for file PositionConstraint.h... Generating code for file PowerEigenSolver.h... Generating code for file primes.h... Generating code for file ProximityBonds.h... Generating code for file pyint_api.h... Generating code for file PySequenceHolder.h... Generating code for file python.h... Generating code for file python_streambuf.h... Generating code for file Query.h... Generating code for file QueryAtom.h... Generating code for file QueryBond.h... Generating code for file QueryObjects.h... Generating code for file QueryOps.h... Generating code for file RangeQuery.h... Generating code for file Ranking.h... Generating code for file RDDepictor.h... Generating code for file RDKitBase.h... Generating code for file RDKitQueries.h... Generating code for file RDLog.h... Generating code for file RDThreads.h... Generating code for file Reaction.h... Generating code for file ReactionFingerprints.h... Generating code for file ReactionParser.h... Generating code for file ReactionPickler.h... Generating code for file ReactionRunner.h... Generating code for file ReactionUtils.h... Generating code for file ReducedGraphs.h... Generating code for file Resonance.h... Generating code for file RingInfo.h... Generating code for file RingMatchTableSet.h... Generating code for file Rings.h... Generating code for file ROMol.h... Generating code for file RWMol.h... Generating code for file SanitException.h... Generating code for file Seed.h... Generating code for file SeedSet.h... Generating code for file SequenceParsers.h... Generating code for file SequenceWriters.h... Generating code for file SetQuery.h... Generating code for file ShapeEncoder.h... Generating code for file ShapeUtils.h... Generating code for file SLNAttribs.h... Generating code for file SLNParse.h... Generating code for file SLNParseOps.h... Generating code for file SmartsWrite.h... Generating code for file SmilesParse.h... Generating code for file SmilesParseOps.h... Generating code for file SmilesWrite.h... Generating code for file SparseBitVect.h... Generating code for file SparseIntVect.h... Generating code for file SquareMatrix.h... Generating code for file StreamOps.h... Generating code for file StretchBend.h... Generating code for file Subgraphs.h... Generating code for file SubgraphUtils.h... Generating code for file SubstructMatch.h... Generating code for file SubstructMatchCustom.h... Generating code for file SubstructureCache.h... Generating code for file SubstructUtils.h... Generating code for file SymmMatrix.h... Generating code for file Target.h... Generating code for file TargetMatch.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAng/<>/Code/DataStructs/BitOps.h:173: warning: found at different nesting level (7) than expected (4) /<>/Code/DataStructs/BitOps.h:174: warning: end of comment block while expecting command leM6.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionPreferences.h... Generating code for file Transform.h... Generating code for file Transform2D.h... Generating code for file Transform3D.h... Generating code for file TriangleSmooth.h... Generating code for file types.h... Generating code for file UFF.h... Generating code for file UniformGrid3D.h... Generating code for file Utils.h... Generating code for file utils.h... Generating code for file Vector.h... Generating code for file versions.h... Generating code for file XOrQuery.h... Generating file documentation... Generating docs for file AlignMolecules.h... Generating docs for file AlignPoints.h... Generating docs for file AndQuery.h... Generating docs for file AngleBend.h... Generating docs for file AngleBend.h... Generating docs for file AngleConstraint.h... Generating docs for file AngleConstraint.h... Generating docs for file Atom.h... Generating docs for file atomic_data.h... Generating docs for file AtomIterators.h... Generating docs for file AtomPairs.h... Generating docs for file AtomTyper.h... Generating docs for file AtomTyper.h... Generating docs for file BadFileException.h... Generating docs for file base64.h... Generating docs for file BFGSOpt.h... Generating docs for file BitOps.h... Generating docs for file BitVect.h... Generating docs for file BitVects.h... Generating docs for file BitVectUtils.h... Generating docs for file Bond.h... Generating docs for file BondIterators.h... Generating docs for file BondStretch.h... Generating docs for file BondStretch.h... Generating docs for file BoostEndInclude.h... Generating docs for file BoostStartInclude.h... Generating docs for file BoundsMatrix.h... Generating docs for file BoundsMatrixBuilder.h... Generating docs for file Builder.h... Generating docs for file Builder.h... Generating docs for file Canon.h... Generating docs for file Catalog.h... Generating docs for file CatalogEntry.h... Generating docs for file CatalogParams.h... Generating docs for file ChemicalFeature.h... Generating docs for file ChemTransforms.h... Generating docs for file Chirality.h... Generating docs for file ChiralSet.h... Generating docs for file ChiralViolationContrib.h... Generating docs for file Composition2N.h... Generating docs for file Conformer.h... Generating docs for file ConnectivityDescriptors.h... Generating docs for file Contrib.h... Generating docs for file Contribs.h... Generating docs for file Contribs.h... Generating docs for file CorrMatGenerator.h... Generating docs for file Crippen.h... Generating docs for file DatastructsException.h... Generating docs for file DebugTrace.h... Generating docs for file DepictUtils.h... Generating docs for file details.h... Generating docs for file Dict.h... Generating docs for file DiscreteDistMat.h... Generating docs for file DiscreteValueVect.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistGeomUtils.h... Generating docs for file DistPicker.h... Generating docs for file DistViolationContrib.h... Generating docs for file DrawingToCairo.h... Generating docs for file DrawingToSVG.h... Generating docs for file DuplicatedSeedCache.h... Generating docs for file EmbeddedFrag.h... Generating docs for file Embedder.h... Generating docs for file EqualityQuery.h... Generating docs for file Exceptions.h... Generating docs for file ExplicitBitVect.h... Generating docs for file Feature.h... Generating docs for file FeatureParser.h... Generating docs for file FileParseException.h... Generating docs for file FileParsers.h... Generating docs for file FileParserUtils.h... Generating docs for file FilterCatalog.h... Generating docs for file FilterCatalogEntry.h... Generating docs for file FilterMatcherBase.h... Generating docs for file FilterMatchers.h... Generating docs for file Filters.h... Generating docs for file Fingerprints.h... Generating docs for file FMCS.h... Generating docs for file ForceField.h... Generating docs for file FourthDimContrib.h... Generating docs for file FPBReader.h... Generating docs for file FragCatalogEntry.h... Generating docs for file FragCatalogUtils.h... Generating docs for file FragCatGenerator.h... Generating docs for file FragCatParams.h... Generating docs for file FragFPGenerator.h... Generating docs for file FreeChemicalFeature.h... Generating docs for file GasteigerCharges.h... Generating docs for file GasteigerParams.h... Generating docs for file Graph.h... Generating docs for file GraphMol.h... Generating docs for file GreaterEqualQuery.h... Generating docs for file GreaterQuery.h... Generating docs for file Grid3D.h... Generating docs for file GridUtils.h... Generating docs for file hanoiSort.h... Generating docs for file HierarchicalClusterPicker.h... Generating docs for file import_array.h... Generating docs for file InfoBitRanker.h... Generating docs for file InfoGainFuncs.h... Generating docs for file Invariant.h... Generating docs for file Inversion.h... Generating docs for file iterator_next.h... Generating docs for file LessEqualQuery.h... Generating docs for file LessQuery.h... Generating docs for file Lipinski.h... Generating docs for file LocaleSwitcher.h... Generating docs for file MACCS.h... Generating docs for file MatchTable.h... Generating docs for file Matrix.h... Generating docs for file MaximumCommonSubgraph.h... Generating docs for file MaxMinPicker.h... Generating docs for file MetricFuncs.h... Generating docs for file MetricMatrixCalc.h... Generating docs for file MMFF.h... Generating docs for file MMPA.h... Generating docs for file MolCatalog.h... Generating docs for file MolCatalogEntry.h... Generating docs for file MolCatalogParams.h... Generating docs for file MolChemicalFeature.h... Generating docs for file MolChemicalFeatureDef.h... Generating docs for file MolChemicalFeatureFactory.h... Generating docs for file MolDescriptors.h... Generating docs for file MolDraw2D.h... Generating docs for file MolDraw2DCairo.h... Generating docs for file MolDraw2DDetails.h... Generating docs for file MolDraw2DQt.h... Generating docs for file MolDraw2DSVG.h... Generating docs for file MolDraw2DUtils.h... Generating docs for file MolDraw2Dwx.h... Generating docs for file MolDrawing.h... Generating docs for file MolFileStereochem.h... Generating docs for file MolFragmenter.h... Generating docs for file MolHash.h... Generating docs for file MolOps.h... Generating docs for file MolPickler.h... Generating docs for file MolSupplier.h... Generating docs for file MolSurf.h... Generating docs for file MolTransforms.h... Generating docs for file MolWriters.h... Generating docs for file MonomerInfo.h... Generating docs for file MorganFingerprints.h... Generating docs for file MQN.h... Generating docs for file new_canon.h... Generating docs for file Nonbonded.h... Generating docs for file Nonbonded.h... Generating docs for file O3AAlignMolecules.h... Generating docs for file OopBend.h... Generating docs for file OrQuery.h... Generating docs for file Params.h... Generating docs for file Params.h... Generating docs for file PeriodicTable.h... Generating docs for file point.h... Generating docs for file PositionConstraint.h... Generating docs for file PositionConstraint.h... Generating docs for file PowerEigenSolver.h... Generating docs for file primes.h... Generating docs for file ProximityBonds.h... Generating docs for file pyint_api.h... Generating docs for file PySequenceHolder.h... Generating docs for file python.h... Generating docs for file python_streambuf.h... Generating docs for file Query.h... Generating docs for file QueryAtom.h... Generating docs for file QueryBond.h... Generating docs for file QueryObjects.h... Generating docs for file QueryOps.h... Generating docs for file RangeQuery.h... Generating docs for file Ranking.h... Generating docs for file RDDepictor.h... Generating docs for file RDKitBase.h... Generating docs for file RDKitQueries.h... Generating docs for file RDLog.h... Generating docs for file RDThreads.h... Generating docs for file Reaction.h... Generating docs for file ReactionFingerprints.h... Generating docs for file ReactionParser.h... Generating docs for file ReactionPickler.h... Generating docs for file ReactionRunner.h... Generating docs for file ReactionUtils.h... Generating docs for file ReducedGraphs.h... Generating docs for file Resonance.h... Generating docs for file RingInfo.h... Generating docs for file RingMatchTableSet.h... Generating docs for file Rings.h... Generating docs for file ROMol.h... Generating docs for file RWMol.h... Generating docs for file SanitException.h... Generating docs for file Seed.h... Generating docs for file SeedSet.h... Generating docs for file SequenceParsers.h... Generating docs for file SequenceWriters.h... Generating docs for file SetQuery.h... Generating docs for file ShapeEncoder.h... Generating docs for file ShapeUtils.h... Generating docs for file SLNAttribs.h... Generating docs for file SLNParse.h... Generating docs for file SLNParseOps.h... Generating docs for file SmartsWrite.h... Generating docs for file SmilesParse.h... Generating docs for file SmilesParseOps.h... Generating docs for file SmilesWrite.h... Generating docs for file SparseBitVect.h... Generating docs for file SparseIntVect.h... Generating docs for file SquareMatrix.h... Generating docs for file StreamOps.h... Generating docs for file StretchBend.h... Generating docs for file Subgraphs.h... Generating docs for file SubgraphUtils.h... Generating docs for file SubstructMatch.h... Generating docs for file SubstructMatchCustom.h... Generating docs for file SubstructureCache.h... Generating docs for file SubstructUtils.h... Generating docs for file SymmMatrix.h... Generating docs for file Target.h... Generating docs for file TargetMatch.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngleM6.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionPreferences.h... Generating docs for file Transform.h... Generating docs for file Transform2D.h... Generating docs for file Transform3D.h... Generating docs for file TriangleSmooth.h... Generating docs for file types.h... Generating docs for file UFF.h... Generating docs for file UniformGrid3D.h... Generating docs for file Utils.h... Generating docs for file utils.h... Generating docs for file Vector.h... Generating docs for file versions.h... Generating docs for file XOrQuery.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound BitVect... Generating docs for compound DatastructsException... Generating docs for compound ExplicitBitVect... Generating docs for compound IndexErrorException... Generating docs for compound KeyErrorException... Generating docs for compound PySequenceHolder... Generating docs for compound SparseBitVect... Generating docs for compound ValueErrorException... Generating namespace index... Generating docs for namespace BFGSOpt Generating docs for namespace boost Generating docs for namespace boost::logging Generating docs for compound boost::logging::rdLogger... Generating docs for namespace boost_adaptbx Generating docs for namespace boost_adaptbx::python Generating docs for compound boost_adaptbx::python::ostream... Generating docs for compound boost_adaptbx::python::streambuf... Generating docs for nested compound boost_adaptbx::python::streambuf::istream... Generating docs for nested compound boost_adaptbx::python::streambuf::ostream... Generating docs for compound boost_adaptbx::python::streambuf_capsule... Generating docs for namespace ChemicalFeatures Generating docs for compound ChemicalFeatures::ChemicalFeature... Generating docs for compound ChemicalFeatures::FreeChemicalFeature... Generating docs for namespace detail Generating docs for namespace DistGeom Generating docs for compound DistGeom::BoundsMatrix... Generating docs for compound DistGeom::ChiralSet... Generating docs for compound DistGeom::ChiralViolationContrib... Generating docs for compound DistGeom::DistViolationCont/<>/Code/ForceField/MMFF/AngleBend.h:30: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) /<>/Code/ForceField/MMFF/AngleBend.h:39: warning: The following parameters of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) are not documented: parameter 'mmffAngleParams' parameter 'mmffPropParamsCentralAtom' /<>/Code/ForceField/MMFF/AngleConstraint.h:26: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /<>/Code/ForceField/MMFF/AngleConstraint.h:26: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /<>/Code/ForceField/MMFF/AngleConstraint.h:35: warning: The following parameters of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /<>/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'bondType' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /<>/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'end1Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /<>/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'end2Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /<>/Code/ForceField/MMFF/BondStretch.h:35: warning: The following parameters of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) are not documented: parameter 'mmffBondParams' /<>/Code/ForceField/MMFF/Nonbonded.h:58: warning: The following parameters of ForceFields::MMFF::EleContrib::EleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, double chargeTerm, boost::uint8_t dielModel, bool is1_4) are not documented: parameter 'chargeTerm' parameter 'dielModel' parameter 'is1_4' /<>/Code/ForceField/MMFF/Params.h:160: warning: argument 'mmffArom' of command @param is not found in the argument list of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) /<>/Code/ForceField/MMFF/Params.h:176: warning: The following parameters of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) are not documented: parameter 'aromatic_types' /<>/Code/ForceField/MMFF/Params.h:1085: warning: The following parameters of ForceFields::MMFF::MMFFOopCollection::getMMFFOop(const bool isMMFFs=false, const std::string &mmffOop="") are not documented: parameter 'isMMFFs' /<>/Code/ForceField/MMFF/Params.h:1214: warning: The following parameters of ForceFields::MMFF::MMFFTorCollection::getMMFFTor(const bool isMMFFs, const std::string &mmffTor="") are not documented: parameter 'isMMFFs' /<>/Code/ForceField/MMFF/PositionConstraint.h:27: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::MMFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) /<>/Code/ForceField/MMFF/StretchBend.h:31: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) /<>/Code/ForceField/MMFF/StretchBend.h:40: warning: The following parameters of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) are not documented: parameter 'mmffStbnParams' parameter 'mmffAngleParams' parameter 'mmffBondParams1' parameter 'mmffBondParams2' /<>/Code/ForceField/MMFF/TorsionAngle.h:33: warning: argument 'torsionType' of command @param is not found in the argument list of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) /<>/Code/ForceField/MMFF/TorsionAngle.h:44: warning: The following parameters of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) are not documented: parameter 'mmffTorParams' /<>/Code/ForceField/MMFF/Nonbonded.h:34: warning: The following parameters of ForceFields::MMFF::VdWContrib::VdWContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, const MMFFVdWRijstarEps *mmffVdWConstants) are not documented: parameter 'mmffVdWConstants' /<>/Code/ForceField/UFF/AngleConstraint.h:26: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /<>/Code/ForceField/UFF/AngleConstraint.h:26: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /<>/Code/ForceField/UFF/AngleConstraint.h:35: warning: The following parameters of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /<>/Code/ForceField/UFF/PositionConstraint.h:27: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::UFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) rib... Generating docs for compound DistGeom::FourthDimContrib... Generating docs for namespace ForceFields Generating docs for compound ForceFields::ForceField... Generating docs for compound ForceFields::ForceFieldContrib... Generating docs for namespace ForceFields::CrystalFF Generating docs for compound ForceFields::CrystalFF::TorsionAngleContribM6... Generating docs for namespace ForceFields::MMFF Generating docs for compound ForceFields::MMFF::AngleBendContrib... Generating docs for compound ForceFields::MMFF::AngleConstraintContrib... Generating docs for compound ForceFields::MMFF::BondStretchContrib... Generating docs for compound ForceFields::MMFF::DistanceConstraintContrib... Generating docs for compound ForceFields::MMFF::EleContrib... Generating docs for compound ForceFields::MMFF::MMFFAngle... Generating docs for compound ForceFields::MMFF::MMFFAngleCollection... Generating docs for compound ForceFields::MMFF::MMFFAromCollection... Generating docs for compound ForceFields::MMFF::MMFFBndkCollection... Generating docs for compound ForceFields::MMFF::MMFFBond... Generating docs for compound ForceFields::MMFF::MMFFBondCollection... Generating docs for compound ForceFields::MMFF::MMFFChg... Generating docs for compound ForceFields::MMFF::MMFFChgCollection... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEle... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEleCollection... Generating docs for compound ForceFields::MMFF::MMFFDef... Generating docs for compound ForceFields::MMFF::MMFFDefCollection... Generating docs for compound ForceFields::MMFF::MMFFDfsbCollection... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurie... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurieCollection... Generating docs for compound ForceFields::MMFF::MMFFOop... Generating docs for compound ForceFields::MMFF::MMFFOopCollection... Generating docs for compound ForceFields::MMFF::MMFFPBCI... Generating docs for compound ForceFields::MMFF::MMFFPBCICollection... Generating docs for compound ForceFields::MMFF::MMFFProp... Generating docs for compound ForceFields::MMFF::MMFFPropCollection... Generating docs for compound ForceFields::MMFF::MMFFStbn... Generating docs for compound ForceFields::MMFF::MMFFStbnCollection... Generating docs for compound ForceFields::MMFF::MMFFTor... Generating docs for compound ForceFields::MMFF::MMFFTorCollection... Generating docs for compound ForceFields::MMFF::MMFFVdW... Generating docs for compound ForceFields::MMFF::MMFFVdWCollection... Generating docs for compound ForceFields::MMFF::MMFFVdWRijstarEps... Generating docs for compound ForceFields::MMFF::OopBendContrib... Generating docs for compound ForceFields::MMFF::PositionConstraintContrib... Generating docs for compound ForceFields::MMFF::StretchBendContrib... Generating docs for compound ForceFields::MMFF::TorsionAngleContrib... Generating docs for compound ForceFields::MMFF::TorsionConstraintContrib... Generating docs for compound ForceFields::MMFF::VdWContrib... Generating docs for namespace ForceFields::MMFF::Utils Generating docs for namespace ForceFields::UFF Generating docs for compound ForceFields::UFF::AngleBendContrib... Generating docs for compound ForceFields::UFF::AngleConstraintContrib... Generating docs for compound ForceFields::UFF::AtomicParams... Generating docs for compound ForceFields::UFF::BondStretchContrib... Generating docs for compound ForceFields::UFF::DistanceConstraintContrib... Generating docs for compound ForceFields::UFF::InversionContrib... Generating docs for compound ForceFields::UFF::ParamCollection... Generating docs for compound ForceFields::UFF::PositionConstraintContrib... Generating docs for compound ForceFields::UFF::TorsionAngleContrib... Generating docs for compound ForceFields::UFF::TorsionConstraintContrib... Generating docs for compound ForceFields::UFF::UFFAngle... Generating docs for compound ForceFields::UFF::UFFBond... Generating docs for compound ForceFields::UFF::UFFInv... Generating docs for compound ForceFields::UFF::UFFTor... Generating /<>/Code/GraphMol/FileParsers/SequenceParsers.h:51: warning: argument 'seq' of command @param is not found in the argument list of RDKit::HELMToMol(const char *helm, bool sanitize=true) /<>/Code/GraphMol/FileParsers/SequenceParsers.h:56: warning: The following parameters of RDKit::HELMToMol(const char *helm, bool sanitize=true) are not documented: parameter 'helm' /<>/Code/GraphMol/Fingerprints/Fingerprints.h:104: warning: The following parameters of RDKit::LayeredFingerprintMol(const ROMol &mol, unsigned int layerFlags=0xFFFFFFFF, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, std::vector< unsigned int > *atomCounts=0, ExplicitBitVect *setOnlyBits=0, bool branchedPaths=true, const std::vector< boost::uint32_t > *fromAtoms=0) are not documented: parameter 'fromAtoms' /<>/Code/GraphMol/FileParsers/FileParsers.h:228: warning: argument 'fName' of command @param is not found in the argument list of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) /<>/Code/GraphMol/FileParsers/FileParsers.h:239: warning: The following parameters of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) are not documented: parameter 'fname' /<>/Code/GraphMol/ChemTransforms/ChemTransforms.h:183: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /<>/Code/GraphMol/ChemTransforms/ChemTransforms.h:183: warning: argument 'comment' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /<>/Code/GraphMol/ChemTransforms/ChemTransforms.h:183: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /<>/Code/GraphMol/ChemTransforms/ChemTransforms.h:183: warning: argument 'smartsColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /<>/Code/GraphMol/Fingerprints/Fingerprints.h:25: warning: argument 'useBondOrders' of command @param is not found in the argument list of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) /<>/Code/GraphMol/Fingerprints/Fingerprints.h:52: warning: The following parameters of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) are not documented: parameter 'useBondOrder' parameter 'bitInfo' /<>/Code/GraphMol/ChemReactions/ReactionRunner.h:93: warning: The following parameters of RDKit::reduceProductToSideChains(const ROMOL_SPTR &product, bool addDummyAtoms=true) are not documented: parameter 'product' /<>/Code/GraphMol/ChemReactions/ReactionRunner.h:61: warning: argument 'reactantTemplateIdx' of command @param is not found in the argument list of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) /<>/Code/GraphMol/ChemReactions/ReactionRunner.h:74: warning: The following parameters of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) are not documented: parameter 'rxn' parameter 'reactantIdx' /<>/Code/GraphMol/Bond.h:356: warning: Found unknown command `\Overload' /<>/Code/GraphMol/Bond.h:356: warning: Found unknown command `\Overload' /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:414: warning: argument 'matches' of command @param is not found in the argument list of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:414: warning: The following parameters of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' docs for compound ForceFields::UFF::UFFVdW... Generating docs for compound ForceFields::UFF::vdWContrib... Generating docs for namespace ForceFields::UFF::Params Generating docs for namespace ForceFields::UFF::Utils Generating docs for namespace Invar Generating docs for compound Invar::Invariant... Generating docs for namespace MolTransforms Generating docs for namespace Queries Generating docs for compound Queries::AndQuery... Generating docs for compound Queries::EqualityQuery... Generating docs for compound Queries::GreaterEqualQuery... Generating docs for compound Queries::GreaterQuery... Generating docs for compound Queries::Int2Type... Generating docs for compound Queries::LessEqualQuery... Generating docs for compound Queries::LessQuery... Generating docs for compound Queries::OrQuery... Generating docs for compound Queries::Query... Generating docs for compound Queries::RangeQuery... Generating docs for compound Queries::SetQuery... Generating docs for compound Queries::XOrQuery... Generating docs for namespace Rankers Generating docs for compound Rankers::argless... Generating docs for compound Rankers::pairGreater... Generating docs for compound Rankers::pairLess... Generating docs for namespace RDCatalog Generating docs for compound RDCatalog::Catalog... Generating docs for compound RDCatalog::CatalogEntry... Generating docs for compound RDCatalog::CatalogParams... Generating docs for compound RDCatalog::HierarchCatalog... Generating docs for nested compound RDCatalog::HierarchCatalog::vertex_entry_t... Generating docs for compound RDCatalog::LinearCatalog... Generating docs for namespace RDDataManip Generating docs for compound RDDataManip::MetricMatrixCalc... Generating docs for namespace RDDepict Generating docs for compound RDDepict::EmbeddedAtom... Generating docs for compound RDDepict::EmbeddedFrag... Generating docs for compound RDDepict::gtIIPair... Generating docs for namespace RDFeatures Generating docs for compound RDFeatures::ExplicitFeature... Generating docs for compound RDFeatures::ImplicitFeature... Generating docs for namespace RDGeom Generating docs for compound RDGeom::Grid3D... Generating docs for compound RDGeom::GridException... Generating docs for compound RDGeom::Point... Generating docs for compound RDGeom::Point2D... Generating docs for compound RDGeom::Point3D... Generating docs for compound RDGeom::PointND... Generating docs for compound RDGeom::Transform2D... Generating docs for compound RDGeom::Transform3D... Generating docs for compound RDGeom::UniformGrid3D... Generating docs for namespace RDInfoTheory Generating docs for compound RDInfoTheory::BitCorrMatGenerator... Generating docs for compound RDInfoTheory::InfoBitRanker... Generating docs for namespace RDKit Generating docs for compound RDKit::AromaticAtomIterator_... Generating docs for compound RDKit::Atom... Generating docs for compound RDKit::atomicData... Generating docs for compound RDKit::AtomIterator_... Generating docs for compound RDKit::AtomMonomerInfo... Generating docs for compound RDKit::AtomPDBResidueInfo... Generating docs for compound RDKit::AtomRingQuery... Generating docs for compound RDKit::BadFileException... Generating docs for compound RDKit::Bond... Generating docs for compound RDKit::BondIterator_... Generating docs for compound RDKit::charptr_functor... Generating docs for compound RDKit::ChemicalReaction... Generating docs for compound RDKit::ChemicalReactionException... Generating docs for compound RDKit::ChemicalReactionParserException... Generating docs for compound RDKit::Conformer... Generating docs for compound RDKit::ConformerException... Generating docs for compound RDKit::ConstBondIterator_... Generating docs for compound RDKit::Dict... Generating docs for compound RDKit::DiscreteDistMat... Generating docs for compound RDKit::DiscreteValueVect... Generating docs for compound RDKit::ExclusionList... Generating docs for compound RDKit::FeatureFileParseException... Generating docs for compound RDKit::FileParseException... Generating docs for compound RDKit::FilterCatalog... Generating docs fo/<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:92: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 /<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: The following parameters of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 are not documented: parameter 'matchVect' /<>/Code/GraphMol/Bond.h:356: warning: Found unknown command `\Overload' /<>/Code/GraphMol/Resonance.h:55: warning: argument 'numThreads' of command @param is not found in the argument list of RDKit::ResonanceMolSupplier::ResonanceMolSupplier(ROMol &mol, unsigned int flags=0, unsigned int maxStructs=1000) /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:321: warning: argument 'matches' of command @param is not found in the argument list of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:321: warning: The following parameters of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'smilesColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'titleLine' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'sanitize' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/Code/GraphMol/Fingerprints/AtomPairs.h:160: warning: The following parameters of RDKit::AtomPairs::getHashedAtomPairFingerprint(const ROMol &mol, unsigned int nBits=2048, unsigned int minLength=1, unsigned int maxLength=maxPathLen - 1, const std::vector< boost::uint32_t > *fromAtoms=0, const std::vector< boost::uint32_t > *ignoreAtoms=0, const std::vector< boost::uint32_t > *atomInvariants=0, bool includeChirality=false, bool use2D=true, int confId=-1) are not documented: parameter 'confId' /<>/Code/GraphMol/Fingerprints/AtomPairs.h:210: warning: The following parameters of RDKit::AtomPairs::getTopologicalTorsionCode(const std::vector< boost::uint32_t > &atomCodes, bool includeChirality=false) are not documented: parameter 'includeChirality' /<>/Code/GraphMol/Canon.h:110: warning: The following parameters of RDKit::Canon::canonicalizeFragment(ROMol &mol, int atomIdx, std::vector< AtomColors > &colors, const std::vector< unsigned int > &ranks, MolStack &molStack, const boost::dynamic_bitset<> *bondsInPlay=0, const std::vector< std::string > *bondSymbols=0, bool doIsomericSmiles=false) are not documented: parameter 'bondsInPlay' parameter 'bondSymbols' parameter 'doIsomericSmiles' r compound RDKit::FilterCatalogEntry... Generating docs for compound RDKit::FilterCatalogParams... Generating docs for compound RDKit::FilterData_t... Generating docs for compound RDKit::FilterMatch... Generating docs for compound RDKit::FilterMatcherBase... Generating docs for compound RDKit::FilterProperty_t... Generating docs for compound RDKit::ForwardSDMolSupplier... Generating docs for compound RDKit::FPBReader... Generating docs for compound RDKit::FragCatalogEntry... Generating docs for compound RDKit::FragCatGenerator... Generating docs for compound RDKit::FragCatParams... Generating docs for compound RDKit::FragFPGenerator... Generating docs for compound RDKit::GasteigerParams... Generating docs for compound RDKit::HasPropQuery... Generating docs for compound RDKit::HasPropWithValueQuery... Generating docs for compound RDKit::HasPropWithValueQuery< TargetPtr, std::string >... Generating docs for compound RDKit::HeteroatomIterator_... Generating docs for compound RDKit::larger_of... Generating docs for compound RDKit::ltDouble... Generating docs for compound RDKit::MatchingAtomIterator_... Generating docs for compound RDKit::MCSAtomCompareParameters... Generating docs for compound RDKit::MCSBondCompareParameters... Generating docs for compound RDKit::MCSParameters... Generating docs for compound RDKit::MCSProgressData... Generating docs for compound RDKit::MCSResult... Generating docs for compound RDKit::MolCatalogEntry... Generating docs for compound RDKit::MolCatalogParams... Generating docs for compound RDKit::MolChemicalFeature... Generating docs for compound RDKit::MolChemicalFeatureDef... Generating docs for compound RDKit::MolChemicalFeatureFactory... Generating docs for compound RDKit::MolDraw2D... Generating docs for compound RDKit::MolDraw2DCairo... Generating docs for compound RDKit::MolDraw2DQt... Generating docs for compound RDKit::MolDraw2DSVG... Generating docs for compound RDKit::MolDraw2Dwx... Generating docs for compound RDKit::MolDrawOptions... Generating docs for compound RDKit::MolPickler... Generating docs for compound RDKit::MolPicklerException... Generating docs for compound RDKit::MolSanitizeException... Generating docs for compound RDKit::MolSupplier... Generating docs for compound RDKit::MolWriter... Generating docs for compound RDKit::PDBMolSupplier... Generating docs for compound RDKit::PDBWriter... Generating docs for compound RDKit::PeriodicTable... Generating docs for compound RDKit::QueryAtom... Generating docs for compound RDKit::QueryAtomIterator_... Generating docs for compound RDKit::QueryBond... Generating docs for compound RDKit::ReactionFingerprintParams... Generating docs for compound RDKit::ReactionPickler... Generating docs for compound RDKit::ReactionPicklerException... Generating docs for compound RDKit::RecursiveStructureQuery... Generating docs for compound RDKit::ResonanceMolSupplier... Generating docs for compound RDKit::RingInfo... Generating docs for compound RDKit::ROMol... Generating docs for compound RDKit::RWMol... Generating docs for compound RDKit::SDMolSupplier... Generating docs for compound RDKit::SDWriter... Generating docs for compound RDKit::SLNParseException... Generating docs for compound RDKit::SmartsMatcher... Generating docs for compound RDKit::SmilesMolSupplier... Generating docs for compound RDKit::SmilesParseException... Generating docs for compound RDKit::SmilesWriter... Generating docs for compound RDKit::SparseIntVect... Generating docs for compound RDKit::TDTMolSupplier... Generating docs for compound RDKit::TDTWriter... Generating docs for namespace RDKit::AtomPairs Generating docs for namespace RDKit::Canon Generating docs for compound RDKit::Canon::AtomCompareFunctor... Generating docs for compound RDKit::Canon::bondholder... Generating docs for compound RDKit::Canon::canon_atom... Generating docs for compound RDKit::Canon::ChiralAtomCompareFunctor... Generating docs for compound RDKit::Canon::MolStackElem... Generating docs for compound RDKit::Canon::MolStackUnion... Generating docs for compound RDKit::Canon::SpecialChiralityAtomCompa/<>/Code/GraphMol/Descriptors/Lipinski.h:42: warning: argument 'strict' of command @param is not found in the argument list of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) /<>/Code/GraphMol/Descriptors/Lipinski.h:49: warning: The following parameters of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) are not documented: parameter 'useStrictDefinition' /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:85: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:85: warning: The following parameters of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:203: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:203: warning: The following parameters of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:147: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<>/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/Code/GraphMol/FilterCatalog/FilterMatchers.h:147: warning: The following parameters of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/Code/GraphMol/MMPA/MMPA.h:35: warning: The following parameters of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int maxCuts=3, unsigned int maxCutBonds=20, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") are not documented: parameter 'pattern' /<>/Code/GraphMol/MolOps.h:577: warning: The following parameters of RDKit::MolOps::getAdjacencyMatrix(const ROMol &mol, bool useBO=false, int emptyVal=0, bool force=false, const char *propNamePrefix=0, const boost::dynamic_bitset<> *bondsToUse=0) are not documented: parameter 'bondsToUse' /<>/Code/GraphMol/MolOps.h:239: warning: The following parameters of RDKit::MolOps::mergeQueryHs(const ROMol &mol, bool mergeUnmappedOnly=false) are not documented: parameter 'mergeUnmappedOnly' /<>/Code/GraphMol/Fingerprints/MorganFingerprints.h:152: warning: The following parameters of RDKit::MorganFingerprints::getHashedFingerprint(const ROMol &mol, unsigned int radius, unsigned int nBits=2048, std::vector< boost::uint32_t > *invariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, bool useChirality=false, bool useBondTypes=true, bool onlyNonzeroInvariants=false, BitInfoMap *atomsSettingBits=0) are not documented: parameter 'nBits' /<>/Code/GraphMol/ReducedGraphs/ReducedGraphs.h:33: warning: The following parameters of RDKit::ReducedGraphs::generateMolExtendedReducedGraph(const ROMol &mol, std::vector< boost::dynamic_bitset<> > *atomTypes=0) are not documented: parameter 'atomTypes' reFunctor... Generating docs for compound RDKit::Canon::SpecialSymmetryAtomCompareFunctor... Generating docs for namespace RDKit::common_properties Generating docs for namespace RDKit::constants Generating docs for namespace RDKit::Descriptors Generating docs for compound RDKit::Descriptors::CrippenParamCollection... Generating docs for compound RDKit::Descriptors::CrippenParams... Generating docs for namespace RDKit::Descriptors::detail Generating docs for namespace RDKit::detail Generating docs for namespace RDKit::DGeomHelpers Generating docs for namespace RDKit::Drawing Generating docs for namespace RDKit::Drawing::detail Generating docs for namespace RDKit::FileParserUtils Generating docs for namespace RDKit::FilterMatchOps Generating docs for compound RDKit::FilterMatchOps::And... Generating docs for compound RDKit::FilterMatchOps::Not... Generating docs for compound RDKit::FilterMatchOps::Or... Generating docs for namespace RDKit::FMCS Generating docs for compound RDKit::FMCS::Composition2N... Generating docs for compound RDKit::FMCS::DuplicatedSeedCache... Generating docs for nested compound RDKit::FMCS::DuplicatedSeedCache::TKey... Generating docs for compound RDKit::FMCS::ExecStatistics... Generating docs for compound RDKit::FMCS::Graph... Generating docs for compound RDKit::FMCS::MaximumCommonSubgraph... Generating docs for compound RDKit::FMCS::MolFragment... Generating docs for compound RDKit::FMCS::NewBond... Generating docs for compound RDKit::FMCS::RingMatchTableSet... Generating docs for compound RDKit::FMCS::Seed... Generating docs for compound RDKit::FMCS::SeedSet... Generating docs for compound RDKit::FMCS::SubstructureCache... Generating docs for nested compound RDKit::FMCS::SubstructureCache::HashKey... Generating docs for nested compound RDKit::FMCS::SubstructureCache::KeyNumericMetrics... Generating docs for compound RDKit::FMCS::Target... Generating docs for compound RDKit::FMCS::TargetMatch... Generating docs for compound RDKit::FMCS::TArray2D... Generating docs for namespace RDKit::Local Generating docs for namespace RDKit::MACCSFingerprints Generating docs for namespace RDKit::MMFF Generating docs for compound RDKit::MMFF::MMFFAtomProperties... Generating docs for compound RDKit::MMFF::MMFFMolProperties... Generating docs for namespace RDKit::MMFF::Tools Generating docs for namespace RDKit::MMPA Generating docs for namespace RDKit::MolAlign Generating docs for compound RDKit::MolAlign::LAP... Generating docs for compound RDKit::MolAlign::MolAlignException... Generating docs for compound RDKit::MolAlign::MolHistogram... Generating docs for compound RDKit::MolAlign::O3A... Generating docs for compound RDKit::MolAlign::O3AConstraint... Generating docs for compound RDKit::MolAlign::O3AConstraintVect... Generating docs for compound RDKit::MolAlign::O3AFuncData... Generating docs for compound RDKit::MolAlign::SDM... Generating docs for namespace RDKit::MolDraw2D_detail Generating docs for namespace RDKit::MolDraw2DUtils Generating docs for namespace RDKit::MolFragmenter Generating docs for compound RDKit::MolFragmenter::FragmenterBondType... Generating docs for namespace RDKit::MolHash Generating docs for compound RDKit::MolHash::HashSet... Generating docs for namespace RDKit::MolOps Generating docs for compound RDKit::MolOps::AdjustQueryParameters... Generating docs for namespace RDKit::MolShapes Generating docs for namespace RDKit::MorganFingerprints Generating docs for namespace RDKit::ReactionRunnerUtils Generating docs for namespace RDKit::ReducedGraphs Generating docs for namespace RDKit::SLNParse Generating docs for compound RDKit::SLNParse::AttribType... Generating docs for namespace RDKit::SmartsWrite Generating docs for namespace RDKit::SmilesWrite Generating docs for namespace RDKit::Subgraphs Generating docs for namespace RDKit::UFF Generating docs for namespace RDKit::UFF::Tools Generating docs for namespace RDKit::Utils Generating docs for compound RDKit::Utils::LocaleSwitcher... Generating docs for namespace RDKit::Utils::detail Generating docs for namespace RDLog Generating docs for /<>/Code/SimDivPickers/HierarchicalClusterPicker.h:79: warning: The following parameters of RDPickers::HierarchicalClusterPicker::pick(const double *distMat, unsigned int poolSize, unsigned int pickSize) const are not documented: parameter 'distMat' namespace RDNumeric Generating docs for compound RDNumeric::Matrix... Generating docs for compound RDNumeric::SquareMatrix... Generating docs for compound RDNumeric::SymmMatrix... Generating docs for compound RDNumeric::Vector... Generating docs for namespace RDNumeric::Alignments Generating docs for namespace RDNumeric::EigenSolvers Generating docs for namespace RDPickers Generating docs for compound RDPickers::DistPicker... Generating docs for compound RDPickers::HierarchicalClusterPicker... Generating docs for compound RDPickers::MaxMinPicker... Generating docs for namespace RingUtils Generating docs for namespace SmilesParseOps Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 10576/65536 hits=80875 misses=11521 finished... (cd /<>/rdkit; epydoc --config epydoc.config) [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/AllChem.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/PandasTools.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/PeriodicTable.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Lipinski.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MACCSkeys.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FeatFinderCLI.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolSurf.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ReducedGraphs.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MCS.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/SaltRemover.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/TemplateAlign.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ | BuildFragmentCatalog.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ | TorsionFingerprints.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Recap.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/PyMol.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/PropertyMol.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Graphs.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolCatalog.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ShowMols.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ | ChemicalForceFields.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ | FunctionalGroups.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ | FastSDMolSupplier.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FragmentCatalog.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Randomize.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ | ChemicalFeatures.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FilterCatalog.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Descriptors.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/inchi.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/DSViewer.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Crippen.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/BRICS.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FragmentMatcher.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fragments.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/SATIS.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ | GraphDescriptors.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Subshape/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Subshape/ | SubshapeObjects.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Subshape/ | SubshapeBuilder.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Subshape/ | SubshapeAligner.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.. +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Subshape/ | BuilderUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/SimpleEnum/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/SimpleEnum/ | Enumerator.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fingerprints/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fingerprints/ | DbFpSupplier.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fingerprints/ | MolSimilarity.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fingerprints/ | ClusterMols.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fingerprints/ | SimilarityScreener.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fingerprints/ | FingerprintMols.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Scaffolds/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Scaffolds/ | MurckoScaffold.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ChemUtils/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ChemUtils/ | AlignDepict.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ChemUtils/ | SDFToCSV.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ChemUtils/ | BulkTester.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/ChemUtils/ | TemplateExpand.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fraggle/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Fraggle/ | FraggleSim.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm3D/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm3D/ | EmbedLib.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm3D/ | ExcludedVolume.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm3D/ | Pharmacophore.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Features/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Features/ | ShowFeats.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Features/ | FeatDirUtilsRD.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/EState/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/EState/EState.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/EState/ | AtomTypes.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/EState/ | Fingerprinter.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/EState/ | EState_VSA.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/fmcs/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/fmcs/fmcs.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolDb/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolDb/ | FingerprintUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolDb/Loader_sa.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolDb/Loader.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolDb/ | Loader_orig.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FeatMaps/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FeatMaps/ | FeatMapParser.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FeatMaps/ | FeatMaps.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [..... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FeatMaps/ | FeatMapUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/FeatMaps/ | FeatMapPoint.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/mplCanvas.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/MolDrawing.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/ | IPythonConsole.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/ | cairoCanvas.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/qtCanvas.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/aggCanvas.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/ | SimilarityMaps.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/canvasbase.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Draw/ | spingCanvas.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm2D/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm2D/ | SigFactory.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [...... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm2D/ | Gobbi_Pharm2D.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm2D/ | Generate.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm2D/Matcher.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm2D/Utils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Pharm2D/ | LazyGenerator.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/AtomPairs/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/AtomPairs/ | Torsions.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/AtomPairs/ | Sheridan.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/AtomPairs/Utils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/AtomPairs/Pairs.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Suppliers/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Suppliers/ | MolSupplier.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [....... +--------------------------------------------------------------------- | In /<>/rdkit/Chem/Suppliers/ | DbMolSupplier.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolKey/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolKey/MolKey.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/Chem/MolKey/ | InchiInfo.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataManip/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataManip/Metric/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataStructs/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataStructs/ | BitEnsembleDb.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataStructs/ | BitEnsemble.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataStructs/ | VectCollection.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataStructs/ | HierarchyVis.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataStructs/ | LazySignature.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataStructs/ | TopNContainer.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........ +--------------------------------------------------------------------- | In /<>/rdkit/DataStructs/BitUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Dbase/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Dbase/DbInfo.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Dbase/StorageUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Dbase/DbConnection.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Dbase/DbModule.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Dbase/DbReport.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Dbase/DbUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Dbase/DbResultSet.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/DistanceGeometry/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/ForceField/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/Geometry/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/BuildComposite.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/GrowComposite.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/MatOps.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/files.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/CompositeRun.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/AnalyzeComposite.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/EnrichPlot.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/ScreenComposite.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Cluster/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Cluster/ | Resemblance.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Cluster/Clusters.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Cluster/Murtagh.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Cluster/ | ClusterVis.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.......... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Cluster/ | Standardize.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Cluster/Butina.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Cluster/ | ClusterUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Descriptors/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Descriptors/ | Descriptors.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Descriptors/ | MoleculeDescriptors.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Descriptors/ | CompoundDescriptors.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Descriptors/ | Parser.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/ModelPackage/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/ModelPackage/ | Packager.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/ModelPackage/ | PackageUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [........... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Data/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Data/Transforms.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Data/Quantize.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Data/SplitData.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Data/MLData.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Data/DataUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Data/Stats.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Data/ | FindQuantBounds.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Neural/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Neural/NetNode.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Neural/Trainers.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Neural/Network.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/Neural/ | CrossValidate.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/Neural/ActFuncs.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/NaiveBayes/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/NaiveBayes/ | CrossValidate.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/NaiveBayes/ | ClassificationModel.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/InfoTheory/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/InfoTheory/ | BitClusterer.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/InfoTheory/ | BitRank.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/InfoTheory/ | entropy.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/SLT/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/SLT/Risk.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/SigTree.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/PruneTree.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/TreeUtils.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/ | BuildQuantTree.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/ID3.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/ | CrossValidate.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/QuantTree.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/Forest.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/DecTree.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.............. +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/Tree.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/ | BuildSigTree.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/DecTree/TreeVis.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Scoring/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/Scoring/Scoring.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/KNN/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/KNN/CrossValidate.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/KNN/ | KNNRegressionModel.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/KNN/ | KNNClassificationModel.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/KNN/KNNModel.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/KNN/DistFunctions.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/MLUtils/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [............... +--------------------------------------------------------------------- | In /<>/rdkit/ML/MLUtils/VoteImg.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Composite/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Composite/ | AdjustComposite.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Composite/ | Composite.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................ +--------------------------------------------------------------------- | In /<>/rdkit/ML/Composite/ | BayesComposite.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................ +--------------------------------------------------------------------- | In /<>/rdkit/Numerics/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................ +--------------------------------------------------------------------- | In rdBase: | No documentation available! | Error: Import failed: | ImportError: No module named rdBase | [................ +--------------------------------------------------------------------- | In RDConfig: | No documentation available! | Error: Import failed: | ImportError: No module named rdkit.RDPaths (line 37) | Error: Two of the specified items, 'rdBase' and 'RDConfig', have the same canonical name ("None"). This may mean that you specified two different files that both use the same module name. Ignoring the second item ('rdBase') [................ +--------------------------------------------------------------------- | In /<>/rdkit/SimDivFilters/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................ +--------------------------------------------------------------------- | In /<>/rdkit/SimDivFilters/ | SimilarityPickers.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................ +--------------------------------------------------------------------- | In /<>/rdkit/VLib/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/Output.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/Filter.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/Node.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/Supply.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/Transform.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | __init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | SmartsMolFilter.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | SmilesSupply.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/demo.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | SDSupply.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | DbMolSupply.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | DbPickleSupplier.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | SmartsRemover.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | SmilesDupeFilter.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/VLib/NodeLib/ | SmilesOutput.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [................. +--------------------------------------------------------------------- | In /<>/rdkit/Avalon/__init__.py: | Import failed (but source code parsing was successful). | Error: ImportError: No module named rdBase (line 2) | [.................... Warning: No information available for rdkit.Chem.ChemUtils.SDFToCSV.TestCase's base unittest.TestCase [.................... Warning: No information available for rdkit.Chem.FastSDMolSupplier.FastSDMolSupplier's base rdkit.Chem.SDMolSupplier [.................... Warning: No information available for rdkit.Chem.FeatMaps.FeatMapPoint.FeatMapPoint's base rdkit.Chem.ChemicalFeatures.FreeChemicalFeature [.................... Warning: rdkit.Chem.MolDb.Loader_sa.Compound's base declarative_base() is not a class [.................... Warning: No information available for rdkit.Chem.MolKey.InchiInfo.TestInchiInfo's base unittest.TestCase [.................... Warning: No information available for rdkit.Chem.PropertyMol.PropertyMol's base rdkit.Chem.Mol [................................ Warning: No information available for rdkit.Chem.ChemUtils.SDFToCSV.TestCase's base unittest.TestCase [................................ Warning: No information available for rdkit.Chem.FastSDMolSupplier.FastSDMolSupplier's base rdkit.Chem.SDMolSupplier [................................ Warning: No information available for rdkit.Chem.FeatMaps.FeatMapPoint.FeatMapPoint's base rdkit.Chem.ChemicalFeatures.FreeChemicalFeature [................................ Warning: rdkit.Chem.MolDb.Loader_sa.Compound's base declarative_base() is not a class [................................ Warning: No information available for rdkit.Chem.MolKey.InchiInfo.TestInchiInfo's base unittest.TestCase [................................ Warning: No information available for rdkit.Chem.PropertyMol.PropertyMol's base rdkit.Chem.Mol [.........................................................................] (cd /<>/Docs/Book; RDBASE=/<> /usr/bin/make html) make[2]: Entering directory '/<>/Docs/Book' mkdir -p _build/html/api mkdir -p _build/html/cppapi cp /<>/rdkit/docs/* _build/html/api cp -r /<>/Code/docs/* _build/html/cppapi pandoc -t rst -f markdown_github -o Overview.rst Overview.md pandoc -t rst -f markdown_github -o Cartridge.rst Cartridge.md pandoc -t rst -f markdown_github -o Cookbook.rst Cookbook.md pandoc -t rst -f markdown_github -o Install.rst Install.md sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.5.3 loading pickled environment... not yet created building [mo]: targets for 0 po files that are out of date building [html]: targets for 7 source files that are out of date updating environment: 7 added, 0 changed, 0 removed reading sources... [ 14%] Cartridge reading sources... [ 28%] Cookbook reading sources... [ 42%] GettingStartedInPython reading sources... [ 57%] Install reading sources... [ 71%] Overview reading sources... [ 85%] RDKit_Book reading sources... [100%] index /<>/Docs/Book/Cookbook.rst:839: ERROR: Duplicate substitution definition name: "image". /<>/Docs/Book/GettingStartedInPython.rst:2245: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 14%] Cartridge writing output... [ 28%] Cookbook writing output... [ 42%] GettingStartedInPython writing output... [ 57%] Install writing output... [ 71%] Overview writing output... [ 85%] RDKit_Book writing output... [100%] index generating indices... genindex writing additional pages... search copying images... [ 4%] images/similarity_map_charges.png copying images... [ 8%] images/similarity_map_crippen.png copying images... [ 12%] images/picture_9.png copying images... [ 16%] images/similarity_map_fp3.png copying images... [ 20%] images/similarity_map_fp1.png copying images... [ 25%] images/cdk2_molgrid.png copying images... [ 29%] images/cdk2_molgrid_aligned.png copying images... [ 33%] images/indole1.png copying images... [ 37%] images/picture_11.png copying images... [ 41%] images/picture_10.png copying images... [ 45%] images/picture_4.png copying images... [ 50%] images/picture_7.png copying images... [ 54%] images/picture_10.jpg copying images... [ 58%] images/picture_5.png copying images... [ 62%] images/similarity_map_fp2.png copying images... [ 66%] images/picture_3.png copying images... [ 70%] images/picture_2.png copying images... [ 75%] images/picture_1.png copying images... [ 79%] images/similarity_map_rf.png copying images... [ 83%] images/cdk2_mol2.png copying images... [ 87%] images/cdk2_mol1.png copying images... [ 91%] images/picture_8.png copying images... [ 95%] images/picture_0.png copying images... [100%] images/picture_6.png copying static files... WARNING: html_static_path entry u'/<>/Docs/Book/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 3 warnings. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/<>/Docs/Book' (cd /<>/Docs/Book; RDBASE=/<> /usr/bin/make latexpdf) make[2]: Entering directory '/<>/Docs/Book' mkdir -p _build/html/api mkdir -p _build/html/cppapi cp /<>/rdkit/docs/* _build/html/api cp -r /<>/Code/docs/* _build/html/cppapi sphinx-build -b latex -d _build/doctrees . _build/latex Running Sphinx v1.5.3 making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found processing RDKit.tex... index Overview Install GettingStartedInPython RDKit_Book Cookbook Cartridge resolving references... writing... /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.AllChem-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.AllChem-module.html#GenerateDepictionMatching3DStructure /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.Draw-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.Fingerprints.FingerprintMols-module.html#FingerprintMol /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.DataStructs-module.html#FingerprintSimilarity /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.DataStructs-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem-module.html#MolFragmentToSmiles /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.SimDivFilters-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.Draw.SimilarityMaps-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.Descriptors-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.Recap-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.Pharm2D.Generate-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.Pharm2D.Gobbi_Pharm2D-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem-module.html /<>/Docs/Book/GettingStartedInPython.rst:: WARNING: unusable reference target found: api/rdkit.Chem.AllChem-module.html /<>/Docs/Book/index.rst:: WARNING: unusable reference target found: api/index.html /<>/Docs/Book/index.rst:: WARNING: unusable reference target found: cppapi/index.html done copying images... images/similarity_map_charges.png images/similarity_map_crippen.png images/picture_9.png images/similarity_map_fp3.png images/similarity_map_fp1.png images/cdk2_molgrid.png images/cdk2_molgrid_aligned.png images/indole1.png images/picture_11.png images/picture_10.png images/picture_4.png images/picture_7.png images/picture_10.jpg images/picture_5.png images/similarity_map_fp2.png images/picture_3.png images/picture_2.png images/picture_1.png images/similarity_map_rf.png images/cdk2_mol2.png images/cdk2_mol1.png images/picture_8.png images/picture_0.png images/picture_6.png copying TeX support files... done build succeeded, 19 warnings. Running LaTeX files through pdflatex... make -C _build/latex all-pdf make[3]: Entering directory '/<>/Docs/Book/_build/latex' pdflatex 'RDKit.tex' This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./RDKit.tex LaTeX2e <2017/01/01> patch level 3 Babel <3.9r> and hyphenation patterns for 3 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2016/10/12 v1.5 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 155. LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 156. LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 205. LaTeX Warning: Hyper reference `Overview:footnote2' on page 2 undefined on inpu t line 214. LaTeX Warning: Hyper reference `Overview:footnote6' on page 2 undefined on inpu t line 239. LaTeX Warning: Hyper reference `Overview:footnote7' on page 2 undefined on inpu t line 242. [2] LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 272. LaTeX Warning: Hyper reference `Overview:footnote3' on page 3 undefined on inpu t line 284. LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 285. LaTeX Warning: Hyper reference `Overview:footnote4' on page 3 undefined on inpu t line 289. 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Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [15] Underfull \hbox (badness 10000) in paragraph at lines 1--1259 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1--1265 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [16] Chapter 3. 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[25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)> <./picture_2.png> <./picture_4.png>] [26] [27] [28 <./cdk 2_mol1.png> <./cdk2_mol2.png>] [29 <./cdk2_molgrid.png>] [30 <./cdk2_molgrid_al igned.png (PNG copy)>] [31] LaTeX Warning: Hyper reference `GettingStartedInPython:chemical-reactions' on p age 32 undefined on input line 2222. [32] [33] [34] [35] [36] [37] LaTeX Warning: Hyper reference `GettingStartedInPython:feature-definitions-used -in-the-morgan-fingerprints' on page 38 undefined on input line 2651. [38] [39] [40] [41 <./similarity_map_fp1.png>] [42 <./similarity_map_fp2.png>] LaTeX Warning: Hyper reference `GettingStartedInPython:list-of-available-descri ptors' on page 43 undefined on input line 2909. [43 <./similarity_map_fp3.png>] [44] [45 <./similarity_map_charges.png>] LaTeX Warning: Hyper reference `RDKit_Book::doc' on page 46 undefined on input line 2972. 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No file RDKit.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. [111] (./RDKit.aux) Package rerunfilecheck Warning: File `RDKit.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on RDKit.pdf (115 pages, 1548707 bytes). Transcript written on RDKit.log. pdflatex 'RDKit.tex' This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./RDKit.tex LaTeX2e <2017/01/01> patch level 3 Babel <3.9r> and hyphenation patterns for 3 language(s) loaded. 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LaTeX Warning: Hyper reference `Overview:footnote5' on page 3 undefined on inpu t line 298. LaTeX Warning: Hyper reference `Overview:footnote8' on page 3 undefined on inpu t line 302. LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 323. [3] [4] [5] [6] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [7] [8] [9] Underfull \hbox (badness 5008) in paragraph at lines 762--764 []\T1/ptm/m/n/10 If not us-ing the python wrap-pers: \T1/pcr/m/n/10 ./bootstrap .sh --with-libraries=regex,thread, [10] [11] Underfull \hbox (badness 10000) in paragraph at lines 903--905 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [12] Underfull \hbox (badness 10000) in paragraph at lines 1012--1014 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ Underfull \hbox (badness 10000) in paragraph at lines 1029--1031 []\T1/ptm/m/n/10 This can be solved by us-ing cmake ver-sion 2.8.3 (or more re- cent) and pro-vid-ing the \T1/pcr/m/n/10 -D [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [15] Underfull \hbox (badness 10000) in paragraph at lines 1--1259 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1--1265 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [16] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 1366--1367 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [17] [18] [19] [20] Overfull \vbox (1.12761pt too high) detected at line 1636 [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1888--1893 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)> <./picture_2.png> <./picture_4.png>] [26] [27] [28 <./cd k2_mol1.png> <./cdk2_mol2.png>] [29 <./cdk2_molgrid.png>] [30 <./cdk2_molgrid_al igned.png (PNG copy)>] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41 <./similarity_map_fp1.png>] [42 <./similarity_map_fp2.png>] [43 <./similarity_map_fp3.png>] [44] [45 <./similarity_map_charges.png>] [46 <./sim ilarity_map_crippen.png>] [47] [48] [49] [50] [51] [52] [53] Overfull \vbox (1.82732pt too high) detected at line 3556 [54] Underfull \hbox (badness 6792) in paragraph at lines 3620--3623 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [55] [56] [57 <./picture_6.png>] [58] Overfull \hbox (38.28595pt too wide) in alignment at lines 3830--3832 [] [] [] Underfull \hbox (badness 10000) in paragraph at lines 3937--3941 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3947--3951 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 4015--4016 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 4020--4021 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 4049--4052 []|\T1/ptm/m/n/10 Number of bridge-head atoms Underfull \hbox (badness 10000) in paragraph at lines 4075--4078 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4084--4088 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4094--4098 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4130--4133 []|\T1/ptm/m/n/10 implemented us-ing a set of Underfull \hbox (badness 10000) in paragraph at lines 4130--4133 \T1/ptm/m/n/10 SMARTS def-i-ni-tions in $(RD- Overfull \hbox (9.18636pt too wide) in paragraph at lines 4130--4133 \T1/ptm/m/n/10 BASE)/Data/FragmentDescriptors.csv| [59] Package longtable Warning: Column widths have changed (longtable) in table 3.1 on input line 4136. [60] Overfull \hbox (2.77637pt too wide) in paragraph at lines 4211--4211 \T1/ptm/m/n/10 guage| Overfull \hbox (1.84311pt too wide) in paragraph at lines 4256--4256 []\T1/ptm/m/n/10 Donor| Overfull \hbox (2.95282pt too wide) in paragraph at lines 4256--4256 []\T1/ptm/m/n/10 Acidic| [61] [62 <./picture_5.png (PNG copy)>] Chapter 4. [63 <./pic ture_9.png (PNG copy)>] [64 <./picture_8.png> <./picture_7.png (PNG copy)>] [65 <./pict ure_10.png> <./picture_11.png>] [66] [67] Overfull \vbox (1.36992pt too high) detected at line 4629 [68] [69] [70] [71] [72 <./picture_10.jpg>] [73] [74] [75] [76] [77] [78] Chapter 5. [79] [80 <./similarity_map_rf.png>] [81] Overfull \vbox (1.12766pt too high) detected at line 5592 [82] [83] [84] [85] [86] [87] [88] Underfull \hbox (badness 10000) in paragraph at lines 5960--5962 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [89] [90] [91] Underfull \vbox (badness 10000) detected at line 6198 Underfull \vbox (badness 10000) detected at line 6198 [92] [93] [94] Chapter 6. [95] [96] [97] [98] Overfull \hbox (75.64436pt too wide) in paragraph at lines 6484--6484 []\T1/pcr/m/n/9 COc1ccc(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NC C(N)[]=[]O)N(C)C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([ ]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC(C)C)NC([]=[]O)C(C)NC([]=[]O)OCc2 ccccc2)cc1| Overfull \hbox (491.4439pt too wide) in paragraph at lines 6488--6488 []\T1/pcr/m/n/9 CCC(C)C1NC([]=[]O)C(NC([]=[]O)C(CC(C)C)N(C)C([]=[]O)[C[]@[][]\T 1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CC(O)CN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C)O)C(C)OC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(OC)c c2)N(C)C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC(C)C)NC([]=[]O)C(C)C([]=[]O)[C[]\T1/pcr/b /n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)OC([]=[]O)CC1O| Overfull \hbox (378.04402pt too wide) in paragraph at lines 6489--6489 []\T1/pcr/m/n/9 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](OC(C)(C)C)CN1C([]=[]O)[C[]@[][]\T 1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[][C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]O C(C)(C)O[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CN1C([]=[]O)OCC1c2ccccc2[]- Overfull \hbox (280.84413pt too wide) in paragraph at lines 6513--6513 []\T1/pcr/m/n/9 COC1[]=[]CC2C([]=[]O)N(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n /9 ](C)C([]=[]O)N3NCCC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]C([]=[]O)N 3[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C[C[]@[][]@[]][]4[](O)c5ccc(Cl)cc5N [C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]34[])C([]=[]O)N[C[]\T1/pcr/b/n/9 @H []\T1/pcr/m/n/9 ](C(C)C)C([]=[]O)N3NCCC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]C([]=[]O)N2N[]=[]C1| Overfull \hbox (178.24425pt too wide) in paragraph at lines 6516--6516 []\T1/pcr/m/n/9 CCCCCCCC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O )N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N(C)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N( C)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)C([]=[]O)NCc1ccc(OC)cc1OC)C(C)C)C(C)C )C(C)C| Overfull \hbox (243.04417pt too wide) in paragraph at lines 6517--6517 []\T1/pcr/m/n/9 CC(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[ C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]@[][]@[]][]3[](O)c4ccc(Cl)cc 4N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]N2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T 1/pcr/m/n/9 ][]2[]CCCNN2C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)N (C)C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCNN2C([]=[]O)[C[]@[][]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCNN2C1[]=[]O| Overfull \hbox (2484.04164pt too wide) in paragraph at lines 6518--6518 []\T1/pcr/m/n/9 CC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCNC ([]=[]N)N)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC([]=[]O)O)NC([]=[]O )[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 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@H[]\T1/pc r/m/n/9 ](CCCNC([]=[]N)N)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C c2cnc[nH][]2[])C([]=[]O)O)C(C)C)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](CC(C)C)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC1 []=[]O| Overfull \vbox (10.12764pt too high) detected at line 6522 [99] Overfull \vbox (6.12764pt too high) detected at line 6586 [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] Chapter 7. No file RDKit.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. [111] (./RDKit.aux) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on RDKit.pdf (117 pages, 1552095 bytes). Transcript written on RDKit.log. pdflatex 'RDKit.tex' This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./RDKit.tex LaTeX2e <2017/01/01> patch level 3 Babel <3.9r> and hyphenation patterns for 3 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 155. LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 156. LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 205. LaTeX Warning: Hyper reference `Overview:footnote2' on page 2 undefined on inpu t line 214. LaTeX Warning: Hyper reference `Overview:footnote6' on page 2 undefined on inpu t line 239. LaTeX Warning: Hyper reference `Overview:footnote7' on page 2 undefined on inpu t line 242. [2] LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 272. LaTeX Warning: Hyper reference `Overview:footnote3' on page 3 undefined on inpu t line 284. LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 285. LaTeX Warning: Hyper reference `Overview:footnote4' on page 3 undefined on inpu t line 289. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [7] [8] [9] Underfull \hbox (badness 5008) in paragraph at lines 762--764 []\T1/ptm/m/n/10 If not us-ing the python wrap-pers: \T1/pcr/m/n/10 ./bootstrap .sh --with-libraries=regex,thread, [10] [11] Underfull \hbox (badness 10000) in paragraph at lines 903--905 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [12] Underfull \hbox (badness 10000) in paragraph at lines 1012--1014 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ Underfull \hbox (badness 10000) in paragraph at lines 1029--1031 []\T1/ptm/m/n/10 This can be solved by us-ing cmake ver-sion 2.8.3 (or more re- cent) and pro-vid-ing the \T1/pcr/m/n/10 -D [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 []\T1/ptm/m/n/10 Run cmake. 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Underfull \hbox (badness 10000) in paragraph at lines 1366--1367 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [17] [18] [19] [20] Overfull \vbox (1.12761pt too high) detected at line 1636 [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1888--1893 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)> <./picture_2.png> <./picture_4.png>] [26] [27] [28 <./cd k2_mol1.png> <./cdk2_mol2.png>] [29 <./cdk2_molgrid.png>] [30 <./cdk2_molgrid_al igned.png (PNG copy)>] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41 <./similarity_map_fp1.png>] [42 <./similarity_map_fp2.png>] [43 <./similarity_map_fp3.png>] [44] [45 <./similarity_map_charges.png>] [46 <./sim ilarity_map_crippen.png>] [47] [48] [49] [50] [51] [52] [53] Overfull \vbox (1.82732pt too high) detected at line 3556 [54] Underfull \hbox (badness 6792) in paragraph at lines 3620--3623 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [55] [56] [57 <./picture_6.png>] [58] Underfull \hbox (badness 10000) in paragraph at lines 3937--3941 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3947--3951 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 4015--4016 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 4020--4021 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 4049--4052 []|\T1/ptm/m/n/10 Number of bridge-head atoms Underfull \hbox (badness 10000) in paragraph at lines 4075--4078 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4084--4088 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . 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No file RDKit.ind. [111] (./RDKit.aux) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on RDKit.pdf (117 pages, 1552017 bytes). Transcript written on RDKit.log. makeindex -s python.ist 'RDKit.idx' This is makeindex, version 2.15 [TeX Live 2016] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file RDKit.idx...done (0 entries accepted, 0 rejected). Nothing written in RDKit.ind. Transcript written in RDKit.ilg. pdflatex 'RDKit.tex' This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./RDKit.tex LaTeX2e <2017/01/01> patch level 3 Babel <3.9r> and hyphenation patterns for 3 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 155. LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 156. LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 205. LaTeX Warning: Hyper reference `Overview:footnote2' on page 2 undefined on inpu t line 214. LaTeX Warning: Hyper reference `Overview:footnote6' on page 2 undefined on inpu t line 239. LaTeX Warning: Hyper reference `Overview:footnote7' on page 2 undefined on inpu t line 242. [2] LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 272. LaTeX Warning: Hyper reference `Overview:footnote3' on page 3 undefined on inpu t line 284. LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 285. LaTeX Warning: Hyper reference `Overview:footnote4' on page 3 undefined on inpu t line 289. LaTeX Warning: Hyper reference `Overview:footnote5' on page 3 undefined on inpu t line 298. LaTeX Warning: Hyper reference `Overview:footnote8' on page 3 undefined on inpu t line 302. LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 323. [3] [4] [5] [6] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [7] [8] [9] Underfull \hbox (badness 5008) in paragraph at lines 762--764 []\T1/ptm/m/n/10 If not us-ing the python wrap-pers: \T1/pcr/m/n/10 ./bootstrap .sh --with-libraries=regex,thread, [10] [11] Underfull \hbox (badness 10000) in paragraph at lines 903--905 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [12] Underfull \hbox (badness 10000) in paragraph at lines 1012--1014 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ Underfull \hbox (badness 10000) in paragraph at lines 1029--1031 []\T1/ptm/m/n/10 This can be solved by us-ing cmake ver-sion 2.8.3 (or more re- cent) and pro-vid-ing the \T1/pcr/m/n/10 -D [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [15] Underfull \hbox (badness 10000) in paragraph at lines 1--1259 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1--1265 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [16] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 1366--1367 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [17] [18] [19] [20] Overfull \vbox (1.12761pt too high) detected at line 1636 [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1888--1893 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)> <./picture_2.png> <./picture_4.png>] [26] [27] [28 <./cd k2_mol1.png> <./cdk2_mol2.png>] [29 <./cdk2_molgrid.png>] [30 <./cdk2_molgrid_al igned.png (PNG copy)>] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41 <./similarity_map_fp1.png>] [42 <./similarity_map_fp2.png>] [43 <./similarity_map_fp3.png>] [44] [45 <./similarity_map_charges.png>] [46 <./sim ilarity_map_crippen.png>] [47] [48] [49] [50] [51] [52] [53] Overfull \vbox (1.82732pt too high) detected at line 3556 [54] Underfull \hbox (badness 6792) in paragraph at lines 3620--3623 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [55] [56] [57 <./picture_6.png>] [58] Underfull \hbox (badness 10000) in paragraph at lines 3937--3941 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3947--3951 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 4015--4016 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 4020--4021 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 4049--4052 []|\T1/ptm/m/n/10 Number of bridge-head atoms Underfull \hbox (badness 10000) in paragraph at lines 4075--4078 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4084--4088 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4094--4098 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4130--4133 []|\T1/ptm/m/n/10 implemented us-ing a set of Underfull \hbox (badness 10000) in paragraph at lines 4130--4133 \T1/ptm/m/n/10 SMARTS def-i-ni-tions in $(RD- Overfull \hbox (9.18636pt too wide) in paragraph at lines 4130--4133 \T1/ptm/m/n/10 BASE)/Data/FragmentDescriptors.csv| [59] [60] Overfull \hbox (2.77637pt too wide) in paragraph at lines 4211--4211 \T1/ptm/m/n/10 guage| Overfull \hbox (1.84311pt too wide) in paragraph at lines 4256--4256 []\T1/ptm/m/n/10 Donor| Overfull \hbox (2.95282pt too wide) in paragraph at lines 4256--4256 []\T1/ptm/m/n/10 Acidic| [61] [62 <./picture_5.png (PNG copy)>] Chapter 4. [63 <./pic ture_9.png (PNG copy)>] [64 <./picture_8.png> <./picture_7.png (PNG copy)>] [65 <./pict ure_10.png> <./picture_11.png>] [66] [67] Overfull \vbox (1.36992pt too high) detected at line 4629 [68] [69] [70] [71] [72 <./picture_10.jpg>] [73] [74] [75] [76] [77] [78] Chapter 5. [79] [80 <./similarity_map_rf.png>] [81] Overfull \vbox (1.12766pt too high) detected at line 5592 [82] [83] [84] [85] [86] [87] [88] Underfull \hbox (badness 10000) in paragraph at lines 5960--5962 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [89] [90] [91] Underfull \vbox (badness 10000) detected at line 6198 Underfull \vbox (badness 10000) detected at line 6198 [92] [93] [94] Chapter 6. [95] [96] [97] [98] Overfull \hbox (75.64436pt too wide) in paragraph at lines 6484--6484 []\T1/pcr/m/n/9 COc1ccc(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NC C(N)[]=[]O)N(C)C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([ ]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC(C)C)NC([]=[]O)C(C)NC([]=[]O)OCc2 ccccc2)cc1| Overfull \hbox (491.4439pt too wide) in paragraph at lines 6488--6488 []\T1/pcr/m/n/9 CCC(C)C1NC([]=[]O)C(NC([]=[]O)C(CC(C)C)N(C)C([]=[]O)[C[]@[][]\T 1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CC(O)CN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C)O)C(C)OC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(OC)c c2)N(C)C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC(C)C)NC([]=[]O)C(C)C([]=[]O)[C[]\T1/pcr/b /n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)OC([]=[]O)CC1O| Overfull \hbox (378.04402pt too wide) in paragraph at lines 6489--6489 []\T1/pcr/m/n/9 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](OC(C)(C)C)CN1C([]=[]O)[C[]@[][]\T 1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[][C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]O C(C)(C)O[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CN1C([]=[]O)OCC1c2ccccc2[]- Overfull \hbox (280.84413pt too wide) in paragraph at lines 6513--6513 []\T1/pcr/m/n/9 COC1[]=[]CC2C([]=[]O)N(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n /9 ](C)C([]=[]O)N3NCCC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]C([]=[]O)N 3[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C[C[]@[][]@[]][]4[](O)c5ccc(Cl)cc5N [C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]34[])C([]=[]O)N[C[]\T1/pcr/b/n/9 @H []\T1/pcr/m/n/9 ](C(C)C)C([]=[]O)N3NCCC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]C([]=[]O)N2N[]=[]C1| Overfull \hbox (178.24425pt too wide) in paragraph at lines 6516--6516 []\T1/pcr/m/n/9 CCCCCCCC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O )N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N(C)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N( C)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)C([]=[]O)NCc1ccc(OC)cc1OC)C(C)C)C(C)C )C(C)C| Overfull \hbox (243.04417pt too wide) in paragraph at lines 6517--6517 []\T1/pcr/m/n/9 CC(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[ C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]@[][]@[]][]3[](O)c4ccc(Cl)cc 4N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]N2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T 1/pcr/m/n/9 ][]2[]CCCNN2C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)N (C)C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCNN2C([]=[]O)[C[]@[][]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCNN2C1[]=[]O| Overfull \hbox (2484.04164pt too wide) in paragraph at lines 6518--6518 []\T1/pcr/m/n/9 CC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCNC ([]=[]N)N)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC([]=[]O)O)NC([]=[]O )[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 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@H[]\T1/pc r/m/n/9 ](CCCNC([]=[]N)N)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C c2cnc[nH][]2[])C([]=[]O)O)C(C)C)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](CC(C)C)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC1 []=[]O| Overfull \vbox (10.12764pt too high) detected at line 6522 [99] Overfull \vbox (6.12764pt too high) detected at line 6586 [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] Chapter 7. (./RDKit.ind) [111] (./RDKit.aux) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on RDKit.pdf (117 pages, 1552017 bytes). Transcript written on RDKit.log. pdflatex 'RDKit.tex' This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./RDKit.tex LaTeX2e <2017/01/01> patch level 3 Babel <3.9r> and hyphenation patterns for 3 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 155. LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 156. LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 205. LaTeX Warning: Hyper reference `Overview:footnote2' on page 2 undefined on inpu t line 214. LaTeX Warning: Hyper reference `Overview:footnote6' on page 2 undefined on inpu t line 239. LaTeX Warning: Hyper reference `Overview:footnote7' on page 2 undefined on inpu t line 242. [2] LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 272. LaTeX Warning: Hyper reference `Overview:footnote3' on page 3 undefined on inpu t line 284. LaTeX Warning: Hyper reference `Overview:footnote1' on page 3 undefined on inpu t line 285. LaTeX Warning: Hyper reference `Overview:footnote4' on page 3 undefined on inpu t line 289. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [7] [8] [9] Underfull \hbox (badness 5008) in paragraph at lines 762--764 []\T1/ptm/m/n/10 If not us-ing the python wrap-pers: \T1/pcr/m/n/10 ./bootstrap .sh --with-libraries=regex,thread, [10] [11] Underfull \hbox (badness 10000) in paragraph at lines 903--905 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [12] Underfull \hbox (badness 10000) in paragraph at lines 1012--1014 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ Underfull \hbox (badness 10000) in paragraph at lines 1029--1031 []\T1/ptm/m/n/10 This can be solved by us-ing cmake ver-sion 2.8.3 (or more re- cent) and pro-vid-ing the \T1/pcr/m/n/10 -D [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 1240--1245 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [15] Underfull \hbox (badness 10000) in paragraph at lines 1--1259 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1--1265 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [16] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 1366--1367 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [17] [18] [19] [20] Overfull \vbox (1.12761pt too high) detected at line 1636 [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1888--1893 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)> <./picture_2.png> <./picture_4.png>] [26] [27] [28 <./cd k2_mol1.png> <./cdk2_mol2.png>] [29 <./cdk2_molgrid.png>] [30 <./cdk2_molgrid_al igned.png (PNG copy)>] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41 <./similarity_map_fp1.png>] [42 <./similarity_map_fp2.png>] [43 <./similarity_map_fp3.png>] [44] [45 <./similarity_map_charges.png>] [46 <./sim ilarity_map_crippen.png>] [47] [48] [49] [50] [51] [52] [53] Overfull \vbox (1.82732pt too high) detected at line 3556 [54] Underfull \hbox (badness 6792) in paragraph at lines 3620--3623 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [55] [56] [57 <./picture_6.png>] [58] Underfull \hbox (badness 10000) in paragraph at lines 3937--3941 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3947--3951 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 4015--4016 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 4020--4021 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 4049--4052 []|\T1/ptm/m/n/10 Number of bridge-head atoms Underfull \hbox (badness 10000) in paragraph at lines 4075--4078 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4084--4088 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4094--4098 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4130--4133 []|\T1/ptm/m/n/10 implemented us-ing a set of Underfull \hbox (badness 10000) in paragraph at lines 4130--4133 \T1/ptm/m/n/10 SMARTS def-i-ni-tions in $(RD- Overfull \hbox (9.18636pt too wide) in paragraph at lines 4130--4133 \T1/ptm/m/n/10 BASE)/Data/FragmentDescriptors.csv| [59] [60] Overfull \hbox (2.77637pt too wide) in paragraph at lines 4211--4211 \T1/ptm/m/n/10 guage| Overfull \hbox (1.84311pt too wide) in paragraph at lines 4256--4256 []\T1/ptm/m/n/10 Donor| Overfull \hbox (2.95282pt too wide) in paragraph at lines 4256--4256 []\T1/ptm/m/n/10 Acidic| [61] [62 <./picture_5.png (PNG copy)>] Chapter 4. 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CCC(C)C1NC([]=[]O)C(NC([]=[]O)C(CC(C)C)N(C)C([]=[]O)[C[]@[][]\T 1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CC(O)CN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C)O)C(C)OC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(OC)c c2)N(C)C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC(C)C)NC([]=[]O)C(C)C([]=[]O)[C[]\T1/pcr/b /n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)OC([]=[]O)CC1O| Overfull \hbox (70.24437pt too wide) in paragraph at lines 6511--6511 []\T1/pcr/m/n/9 CCC(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)C(CC(O)CCl)OC([]=[ ]O)CCNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)N(C)C([]=[]O)[C[]\T1/pcr /b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)N(C)C1[]=[]O| Overfull \hbox (37.8444pt too wide) in paragraph at lines 6512--6512 []\T1/pcr/m/n/9 C[]=[]CCOC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1 []C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](OC(C)(C)C)CN1C([]=[]O)[C[]@[][]\T 1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[][C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]O C(C)(C)O[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CN1C([]=[]O)OCC1c2ccccc2[]- Overfull \hbox (280.84413pt too wide) in paragraph at lines 6513--6513 []\T1/pcr/m/n/9 COC1[]=[]CC2C([]=[]O)N(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n /9 ](C)C([]=[]O)N3NCCC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]C([]=[]O)N 3[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C[C[]@[][]@[]][]4[](O)c5ccc(Cl)cc5N [C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]34[])C([]=[]O)N[C[]\T1/pcr/b/n/9 @H []\T1/pcr/m/n/9 ](C(C)C)C([]=[]O)N3NCCC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]C([]=[]O)N2N[]=[]C1| Overfull \hbox (178.24425pt too wide) in paragraph at lines 6516--6516 []\T1/pcr/m/n/9 CCCCCCCC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O )N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N(C)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N( C)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)C([]=[]O)NCc1ccc(OC)cc1OC)C(C)C)C(C)C )C(C)C| Overfull \hbox (243.04417pt too wide) in paragraph at lines 6517--6517 []\T1/pcr/m/n/9 CC(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[ C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]@[][]@[]][]3[](O)c4ccc(Cl)cc 4N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]N2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T 1/pcr/m/n/9 ][]2[]CCCNN2C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)N (C)C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCNN2C([]=[]O)[C[]@[][]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCNN2C1[]=[]O| Overfull \hbox (2484.04164pt too wide) in paragraph at lines 6518--6518 []\T1/pcr/m/n/9 CC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCNC ([]=[]N)N)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC([]=[]O)O)NC([]=[]O )[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCSC)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CCCCN)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCNC([]=[]N )N)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[ ]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/ b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr /m/n/9 ](CCC(N)[]=[]O)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([ ]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCSC)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H []\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2 []CCCN2C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](N)CO)C(C)C)CSSC[C[]@ [][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](CCCCN)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CC(C)C)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCNC([]=[]N)N)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pc r/m/n/9 ](CCCNC([]=[]N)N)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C c2cnc[nH][]2[])C([]=[]O)O)C(C)C)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](CC(C)C)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC1 []=[]O| Overfull \vbox (10.12764pt too high) detected at line 6522 [99] Overfull \vbox (6.12764pt too high) detected at line 6586 [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] Chapter 7. (./RDKit.ind) [111] (./RDKit.aux) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on RDKit.pdf (117 pages, 1552017 bytes). Transcript written on RDKit.log. make[3]: Leaving directory '/<>/Docs/Book/_build/latex' pdflatex finished; the PDF files are in _build/latex. make[2]: Leaving directory '/<>/Docs/Book' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' cp -r rdkit obj-*/ find /<> -name rdchem.so /<>/obj-aarch64-linux-gnu/rdkit/Chem/rdchem.so #export RDBASE=/<> PYTHONPATH=/<>/obj-aarch64-linux-gnu/ LD_LIBRARY_PATH="/<>/obj-aarch64-linux-gnu//lib:" RDBASE=/<> PYTHONPATH=/<>/obj-aarch64-linux-gnu/:/<>/obj-aarch64-linux-gnu//rdkit/Chem/ LD_LIBRARY_PATH="/<>/obj-aarch64-linux-gnu//lib:" dh_auto_test make -j4 test ARGS\+=-j4 make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/obj-aarch64-linux-gnu Start 1: testDict Start 2: testDataStructs Start 3: testFPB Start 4: pyBV 1/102 Test #1: testDict ......................... Passed 0.03 sec 2/102 Test #3: testFPB .......................... Passed 0.02 sec 3/102 Test #2: testDataStructs .................. Passed 0.12 sec Start 5: pyDiscreteValueVect Start 6: pySparseIntVect Start 7: pyFPB 4/102 Test #7: pyFPB ............................ Passed 0.21 sec 5/102 Test #5: pyDiscreteValueVect .............. Passed 0.24 sec Start 8: testTransforms Start 9: testGrid 6/102 Test #8: testTransforms ................... Passed 0.03 sec 7/102 Test #6: pySparseIntVect .................. Passed 0.35 sec 8/102 Test #9: testGrid ......................... Passed 0.12 sec Start 10: testPyGeometry Start 11: testMatrices Start 12: testAlignment 9/102 Test #11: testMatrices ..................... Passed 0.21 sec 10/102 Test #12: testAlignment .................... Passed 0.20 sec Start 13: pyAlignment Start 14: testOptimizer 11/102 Test #10: testPyGeometry ................... Passed 0.32 sec 12/102 Test #14: testOptimizer .................... Passed 0.19 sec 13/102 Test #13: pyAlignment ...................... Passed 0.21 sec Start 15: testUFFForceField Start 16: testMMFFForceField Start 17: pyForceFieldConstraints 14/102 Test #15: testUFFForceField ................ Passed 0.41 sec Start 18: testDistGeom 15/102 Test #18: testDistGeom ..................... Passed 0.03 sec 16/102 Test #4: pyBV ............................. Passed 1.74 sec 17/102 Test #17: pyForceFieldConstraints .......... Passed 1.00 sec Start 19: pyDistGeom Start 20: graphmolTest1 Start 21: graphmolcpTest 18/102 Test #20: graphmolTest1 .................... Passed 0.22 sec 19/102 Test #21: graphmolcpTest ................... Passed 0.30 sec Start 22: graphmolqueryTest Start 23: graphmolMolOpsTest 20/102 Test #19: pyDistGeom ....................... Passed 0.33 sec 21/102 Test #22: graphmolqueryTest ................ Passed 0.21 sec Start 24: graphmoltestCanon Start 25: graphmoltestChirality 22/102 Test #24: graphmoltestCanon ................ Passed 0.02 sec 23/102 Test #25: graphmoltestChirality ............ Passed 0.22 sec Start 26: graphmoltestPickler Start 27: graphmolIterTest 24/102 Test #27: graphmolIterTest ................. Passed 0.30 sec Start 28: hanoiTest 25/102 Test #26: graphmoltestPickler .............. Passed 0.71 sec Start 29: graphmolMemTest1 26/102 Test #29: graphmolMemTest1 ................. Passed 0.01 sec Start 30: resMolSupplierTest 27/102 Test #30: resMolSupplierTest ...............***Exception: Other 0.49 sec [13:31:17] ----------------------- testBaseFunctionality [13:31:17] **** Test Assert Expression Failed: Violation occurred on line 92 in file /<>/Code/GraphMol/resMolSupplierTest.cpp Failed Expression: bondTypeMap.size() == 2 **** terminate called after throwing an instance of 'Invar::Invariant' what(): Test Assert Start 31: testDepictor 28/102 Test #31: testDepictor ..................... Passed 0.81 sec 29/102 Test #23: graphmolMolOpsTest ............... Passed 3.37 sec Start 32: pyDepictor Start 33: smiTest1 30/102 Test #33: smiTest1 ......................... Passed 0.71 sec Start 34: smaTest1 31/102 Test #32: pyDepictor ....................... Passed 0.72 sec Start 35: fileParsersTest1 32/102 Test #34: smaTest1 ......................... Passed 2.85 sec Start 36: testMolSupplier 33/102 Test #36: testMolSupplier .................. Passed 0.50 sec Start 37: testMolWriter 34/102 Test #37: testMolWriter .................... Passed 0.91 sec Start 38: testTplParser 35/102 Test #38: testTplParser .................... Passed 0.10 sec Start 39: testMol2ToMol 36/102 Test #39: testMol2ToMol .................... Passed 0.10 sec Start 40: testSequence 37/102 Test #40: testSequence ..................... Passed 0.11 sec Start 41: testSubstructMatch 38/102 Test #41: testSubstructMatch ............... Passed 1.31 sec Start 42: testReaction 39/102 Test #42: testReaction ..................... Passed 0.50 sec Start 43: testReactionFingerprints 40/102 Test #43: testReactionFingerprints ......... Passed 0.11 sec Start 44: pyChemReactions 41/102 Test #44: pyChemReactions .................. Passed 0.51 sec Start 45: testChemTransforms 42/102 Test #45: testChemTransforms ............... Passed 0.16 sec Start 46: testSubgraphs1 43/102 Test #46: testSubgraphs1 ................... Passed 0.91 sec Start 47: testSubgraphs2 44/102 Test #47: testSubgraphs2 ................... Passed 0.10 sec Start 48: filterCatalogTest 45/102 Test #48: filterCatalogTest ................ Passed 0.51 sec Start 49: pyFilterCatalog 46/102 Test #49: pyFilterCatalog .................. Passed 2.11 sec Start 50: testFragCatalog 47/102 Test #50: testFragCatalog .................. Passed 2.11 sec Start 51: pyFragCatalog 48/102 Test #51: pyFragCatalog .................... Passed 0.51 sec Start 52: testDescriptors 49/102 Test #35: fileParsersTest1 ................. Passed 28.16 sec Start 53: pyMolDescriptors 50/102 Test #53: pyMolDescriptors ................. Passed 0.82 sec Start 54: testFingerprints 51/102 Test #52: testDescriptors .................. Passed 13.98 sec Start 55: testPartialCharges 52/102 Test #55: testPartialCharges ............... Passed 0.12 sec Start 56: pyPartialCharges 53/102 Test #56: pyPartialCharges ................. Passed 0.96 sec Start 57: testMolTransforms 54/102 Test #57: testMolTransforms ................ Passed 0.11 sec Start 58: pyMolTransforms 55/102 Test #58: pyMolTransforms .................. Passed 0.57 sec Start 59: testMMFFForceFieldHelpers 56/102 Test #16: testMMFFForceField ............... Passed 46.64 sec Start 60: testUFFForceFieldHelpers 57/102 Test #54: testFingerprints ................. Passed 36.53 sec Start 61: testCrystalForceField 58/102 Test #61: testCrystalForceField ............ Passed 0.42 sec Start 62: pyForceFieldHelpers 59/102 Test #62: pyForceFieldHelpers .............. Passed 1.21 sec Start 63: testDistGeomHelpers 60/102 Test #60: testUFFForceFieldHelpers ......... Passed 70.55 sec Start 64: pyDistGeom 61/102 Test #64: pyDistGeom ....................... Passed 9.83 sec Start 65: testMolAlign 62/102 Test #28: hanoiTest ........................ Passed 130.78 sec Start 66: pyMolAlign 63/102 Test #59: testMMFFForceFieldHelpers ........ Passed 101.79 sec Start 67: testFeatures 64/102 Test #67: testFeatures ..................... Passed 0.10 sec Start 68: pyChemicalFeatures 65/102 Test #68: pyChemicalFeatures ............... Passed 0.52 sec Start 69: testShapeHelpers 66/102 Test #69: testShapeHelpers ................. Passed 0.11 sec Start 70: pyShapeHelpers 67/102 Test #70: pyShapeHelpers ................... Passed 0.51 sec Start 71: testMolCatalog 68/102 Test #71: testMolCatalog ................... Passed 0.11 sec Start 72: pyMolCatalog 69/102 Test #72: pyMolCatalog ..................... Passed 0.52 sec Start 73: moldraw2DTest1 70/102 Test #73: moldraw2DTest1 ................... Passed 5.35 sec Start 74: pyMolDraw2D 71/102 Test #74: pyMolDraw2D ...................... Passed 0.72 sec Start 75: testFMCS 72/102 Test #75: testFMCS ......................... Passed 3.13 sec Start 76: pyFMCS 73/102 Test #76: pyFMCS ........................... Passed 2.32 sec Start 77: FMCStest 74/102 Test #77: FMCStest ......................... Passed 0.35 sec Start 78: testMolHash 75/102 Test #78: testMolHash ...................... Passed 0.31 sec Start 79: pyMolHash 76/102 Test #79: pyMolHash ........................ Passed 0.71 sec Start 80: testMMPA 77/102 Test #80: testMMPA ......................... Passed 0.71 sec Start 81: pyMMPA 78/102 Test #81: pyMMPA ........................... Passed 3.52 sec Start 82: testReducedGraphs 79/102 Test #82: testReducedGraphs ................ Passed 0.31 sec Start 83: pyReducedGraphs 80/102 Test #83: pyReducedGraphs .................. Passed 1.12 sec Start 84: testSLNParse 81/102 Test #84: testSLNParse ..................... Passed 0.32 sec Start 85: pySLNParse 82/102 Test #85: pySLNParse ....................... Passed 1.13 sec Start 86: pyGraphMolWrap 83/102 Test #66: pyMolAlign ....................... Passed 47.61 sec Start 87: pyTestConformerWrap 84/102 Test #87: pyTestConformerWrap .............. Passed 0.62 sec Start 88: pyTestThreads 85/102 Test #88: pyTestThreads .................... Passed 4.31 sec Start 89: testQuery 86/102 Test #89: testQuery ........................ Passed 0.22 sec Start 90: testMatCalc 87/102 Test #90: testMatCalc ...................... Passed 0.22 sec Start 91: pyMatCalc 88/102 Test #91: pyMatCalc ........................ Passed 2.28 sec Start 92: pySimDivPickers 89/102 Test #86: pyGraphMolWrap ...................***Failed 31.74 sec ..............[13:33:59] SMARTS Parse Error: syntax error for input: 'fiib' ....[13:33:59] ERROR: Problems encountered parsing data fields [13:33:59] ERROR: moving to the begining of the next molecule [13:33:59] ERROR: Problems encountered parsing data fields [13:33:59] ERROR: moving to the begining of the next molecule [13:33:59] Spurious data before the first property will be ignored [13:33:59] Property will be truncated after the first blank line [13:33:59] Property will be truncated after the first blank line [13:33:59] Property will be truncated after the first blank line [13:33:59] ERROR: Problems encountered parsing data fields [13:33:59] ERROR: moving to the begining of the next molecule [13:33:59] ERROR: Problems encountered parsing data fields [13:33:59] ERROR: moving to the begining of the next molecule [13:33:59] Spurious data before the first property will be ignored [13:33:59] Property will be truncated after the first blank line [13:33:59] Property will be truncated after the first blank line [13:33:59] Property will be truncated after the first blank line [13:33:59] ERROR: Problems encountered parsing data fields [13:33:59] ERROR: moving to the begining of the next molecule [13:33:59] Property will be truncated after the first blank line [13:33:59] ERROR: Problems encountered parsing data fields [13:33:59] ERROR: moving to the begining of the next molecule [13:33:59] Property will be truncated after the first blank line .[13:33:59] SMILES Parse Error: syntax error for input: 'fail' [13:33:59] ERROR: Smiles parse error on line 2 [13:33:59] ERROR: Cannot create molecule from : 'fail' >>> This may result in an infinite loop. It should finish almost instantly <<< OK, it finished. ............[13:34:00] Explicit valence for atom # 1 C, 5, is greater than permitted ............[13:34:00] non-ring atom 0 marked aromatic [13:34:00] non-ring atom 0 marked aromatic [13:34:00] **** Range Error idx Violation occurred on line 155 in file /<>/Code/GraphMol/ROMol.cpp Failed Expression: 12 <= 5 **** [13:34:00] non-ring atom 0 marked aromatic [13:34:00] non-ring atom 0 marked aromatic [13:34:00] **** Range Error idx Violation occurred on line 155 in file /<>/Code/GraphMol/ROMol.cpp Failed Expression: 12 <= 5 **** ...............[13:34:00] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count. [13:34:00] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count. ..............[13:34:00] Can't kekulize mol [13:34:00] Explicit valence for atom # 1 C, 5, is greater than permitted ......................................[13:34:29] **** Range Error idx Violation occurred on line 155 in file /<>/Code/GraphMol/ROMol.cpp Failed Expression: 3 <= 0 **** .[13:34:29] 1 [13:34:29] 2 [13:34:29] 1 [13:34:29] 2 ..F..... ====================================================================== FAIL: testResMolSupplier (__main__.TestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/<>/Code/GraphMol/Wrap/rough_test.py", line 3143, in testResMolSupplier self.assertEqual(len(bondTypeDict), 2) AssertionError: 1 != 2 ---------------------------------------------------------------------- Ran 119 tests in 30.602s FAILED (failures=1) Start 93: pyRanker 90/102 Test #93: pyRanker ......................... Passed 0.71 sec Start 94: testChemicalFeatures 91/102 Test #94: testChemicalFeatures ............. Passed 0.31 sec Start 95: pyFeatures 92/102 Test #63: testDistGeomHelpers .............. Passed 122.69 sec 93/102 Test #95: pyFeatures ....................... Passed 0.24 sec Start 96: pythonTestDbCLI Start 97: pythonTestDirML 94/102 Test #92: pySimDivPickers .................. Passed 9.41 sec Start 98: pythonTestDirDataStructs 95/102 Test #98: pythonTestDirDataStructs ......... Passed 1.83 sec Start 99: pythonTestDirDbase 96/102 Test #99: pythonTestDirDbase ............... Passed 1.01 sec Start 100: pythonTestDirSimDivFilters 97/102 Test #100: pythonTestDirSimDivFilters ....... Passed 0.61 sec Start 101: pythonTestDirVLib 98/102 Test #101: pythonTestDirVLib ................ Passed 4.23 sec Start 102: pythonTestDirChem 99/102 Test #97: pythonTestDirML .................. Passed 15.93 sec 100/102 Test #96: pythonTestDbCLI .................. Passed 35.17 sec 101/102 Test #102: pythonTestDirChem ................ Passed 118.17 sec 102/102 Test #65: testMolAlign ..................... Passed 234.61 sec 98% tests passed, 2 tests failed out of 102 Total Test time (real) = 362.91 sec The following tests FAILED: 30 - resMolSupplierTest (OTHER_FAULT) 86 - pyGraphMolWrap (Failed) Errors while running CTest Makefile:152: recipe for target 'test' failed make[2]: *** [test] Error 8 make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh_auto_test: make -j4 test ARGS+=-j4 returned exit code 2 debian/rules:96: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --with python2 --buildsystem=cmake --parallel dh_testroot -a -O--buildsystem=cmake -O--parallel dh_prep -a -O--buildsystem=cmake -O--parallel dh_auto_install -a -O--buildsystem=cmake -O--parallel make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/External/INCHI-API /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/External/INCHI-API /<>/obj-aarch64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ChemicalFeatures /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ML/Cluster/Murtagh /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/RDGeneral /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/RDGeneral /<>/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /<>/External/INCHI-API/python/noinchi.py /<>/rdkit/Chem/inchi.py make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 0%] Built target hc [ 2%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/RDBoost /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/RDBoost /<>/obj-aarch64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= [ 2%] Built target inchi_support [ 2%] Built target ChemicalFeatures make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/RDGeneral /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/RDGeneral /<>/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataStructs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataStructs /<>/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics /<>/obj-aarch64-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build [ 3%] Built target RDBoost make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 3%] Built target testDict make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics/EigenSolvers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers /<>/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Catalogs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Catalogs /<>/obj-aarch64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= [ 4%] Built target testMatrices [ 6%] Built target DataStructs make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Query /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Query /<>/obj-aarch64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataManip/MetricMatrixCalc /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 7%] Built target EigenSolvers make[3]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataManip/MetricMatrixCalc/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /<>/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 8%] Built target Catalogs [ 9%] Built target testQuery make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/SimDivPickers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/SimDivPickers /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ML/Cluster/Murtagh /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh /<>/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= [ 9%] Built target testMatCalc make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ML/InfoTheory /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 9%] Built target rdMetricMatrixCalc [ 10%] Built target SimDivPickers make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ChemicalFeatures /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/RDBoost/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/RDBoost/Wrap /<>/obj-aarch64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= [ 10%] Built target InfoTheory make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend [ 11%] Built target Clustering make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataStructs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataStructs /<>/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DataStructs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DataStructs /<>/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 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directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ML/InfoTheory/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap /<>/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/SimDivPickers/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap /<>/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make 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'/<>/obj-aarch64-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build [ 18%] Built target cDataStructs make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Geometry /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Geometry /<>/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build [ 19%] Built target rdInfoTheory [ 20%] Built target rdSimDivPickers make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Geometry /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Geometry /<>/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Geometry/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Geometry/Wrap /<>/obj-aarch64-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= [ 20%] Built target testGrid [ 21%] Built target cQuantize make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make 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/<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 22%] Built target testTransforms make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[3]: Entering 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/<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment /<>/obj-aarch64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/Numerics/Optimizer /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer /<>/obj-aarch64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build [ 24%] Built target testOptimizer make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend [ 24%] Built target testAlignment make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ForceField /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ForceField /<>/obj-aarch64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 24%] Built target rdAlignment make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'. make[3]: Leaving 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"Unix Makefiles" /<> /<>/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolTransforms /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= [ 35%] Built target ForceField make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Depictor /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 35%] Built target MolTransforms make -f 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Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 36%] Built target Depictor make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolTransforms/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'. [ 38%] Built target SmilesParse make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ShapeHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= [ 39%] Built target Subgraphs [ 39%] Built target PartialCharges make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ReducedGraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 39%] Built target rdMolTransforms make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SLNParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= [ 40%] Built target ShapeHelpers make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= [ 40%] Built target ReducedGraphs make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend [ 41%] Built target MolCatalog make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ChemicalFeatures/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap /<>/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ForceFieldHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build [ 42%] Built target SLNParse make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend [ 42%] Built target rdqueries make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolAlign /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build [ 43%] Built target rdChemicalFeatures make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= [ 44%] Built target ForceFieldHelpers make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 44%] Built target MolAlign make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= [ 44%] Built target graphmolMemTest1 make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= [ 44%] Built target graphmolqueryTest make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build [ 49%] Built target FileParsers make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemTransforms /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= [ 50%] Built target graphmolcpTest make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Depictor/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= [ 51%] Built target graphmolIterTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= [ 51%] Built target graphmoltestCanon make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build [ 52%] Built target ChemTransforms make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 52%] Built target rdDepictor [ 52%] Built target smaTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= [ 53%] Built target smiTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build [ 54%] Built target testMolWriter make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 54%] Built target testTplParser make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /<>/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build [ 54%] Built target fileParsersTest1 make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend [ 55%] Built target testMolSupplier make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Substruct /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct /<>/obj-aarch64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'. make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Descriptors /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build [ 55%] Built target testSequence make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Fingerprints /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 55%] Built target testMol2ToMol make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemTransforms /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= [ 56%] Built target testSubstructMatch make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build [ 57%] Built target Descriptors make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build [ 58%] Built target testChemTransforms [ 58%] Built target Fingerprints make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FilterCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FragCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build [ 59%] Built target testSubgraphs1 make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Descriptors /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= [ 59%] Built target testSubgraphs2 make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Descriptors/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build [ 60%] Built target FilterCatalog make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 61%] Built target testDescriptors make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Fingerprints /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /<>/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend [ 63%] Built target FragCatalog make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/PartialCharges /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend [ 64%] Built target rdMolDescriptors make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/PartialCharges/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolTransforms /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build [ 65%] Built target testFingerprints make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ForceFieldHelpers/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= [ 65%] Built target testPartialCharges make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolAlign/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= [ 65%] Built target rdPartialCharges make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolChemicalFeatures /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build [ 65%] Built target testMolTransforms make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ShapeHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build [ 66%] Built target rdForceFieldHelpers make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ShapeHelpers/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build [ 67%] Built target rdMolAlign make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend [ 68%] Built target MolChemicalFeatures make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolCatalog/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= [ 68%] Built target testShapeHelpers make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolDraw2D /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= [ 69%] Built target rdShapeHelpers make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FMCS /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build [ 70%] Built target testMolCatalog make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend [ 70%] Built target rdMolCatalog make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolHash /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MMPA /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= [ 71%] Built target MolDraw2D make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ReducedGraphs /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build [ 72%] Built target FMCS make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ReducedGraphs/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build [ 74%] Built target MolHash [ 74%] Built target MMPA make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SLNParse /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/SLNParse/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build [ 74%] Built target testReducedGraphs make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 75%] Built target testSLNParse make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 76%] Built target rdReducedGraphs cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend [ 76%] Built target rdSLNParse make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ForceField/UFF /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ForceField/UFF /<>/obj-aarch64-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build [ 76%] Built target testUFFForceField make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend [ 78%] Built target rdmolfiles make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DistGeom /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DistGeom /<>/obj-aarch64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ForceField/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ForceField/Wrap /<>/obj-aarch64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build [ 79%] Built target rdmolops make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 80%] Built target DistGeometry make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend [ 80%] Built target rdForceField make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= [ 82%] Built target rdchem make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build [ 83%] Built target resMolSupplierTest make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 84%] Built target hanoiTest make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build [ 84%] Built target graphmolTest1 make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol /<>/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/Depictor /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor /<>/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 85%] Built target graphmoltestPickler [ 85%] Built target graphmolMolOpsTest make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FilterCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 86%] Built target graphmoltestChirality make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FilterCatalog/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= [ 86%] Built target testDepictor make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FragCatalog /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build [ 86%] Built target filterCatalogTest make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FragCatalog/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 87%] Built target rdfiltercatalog make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolChemicalFeatures /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= [ 87%] Built target testFragCatalog make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolChemicalFeatures/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build [ 89%] Built target ChemReactions make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolDraw2D /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build [ 90%] Built target rdfragcatalog make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend [ 90%] Built target testFeatures make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolDraw2D/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FMCS /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build [ 91%] Built target rdMolChemicalFeatures [ 92%] Built target moldraw2DTest1 make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FMCS/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/FMCS/Test /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test /<>/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 92%] Built target testFMCS [ 92%] Built target rdMolDraw2D make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolHash/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolHash /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build [ 92%] Built target rdFMCS make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend [ 92%] Built target FMCStest make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MMPA /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MMPA/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 92%] Built target testMolHash make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend [ 93%] Built target rdMolHash make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/DistGeomHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DistGeom /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DistGeom /<>/obj-aarch64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 93%] Built target rdMMPA make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/DistGeom/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/DistGeom/Wrap /<>/obj-aarch64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= [ 94%] Built target testMMPA make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= [ 94%] Built target testDistGeom make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= [ 94%] Built target DistGeomHelpers make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ChemReactions/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build [ 95%] Built target DistGeom make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend [ 95%] Built target testReaction make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ForceFieldHelpers/MMFF /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ForceFieldHelpers/UFF /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target testReactionFingerprints make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build [ 96%] Built target rdChemReactions make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/ForceFieldHelpers/CrystalFF /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /<>/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/DistGeomHelpers /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target testMMFFForceFieldHelpers [ 97%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/DistGeomHelpers/Wrap /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /<>/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/GraphMol/MolAlign /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign /<>/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 98%] Built target testDistGeomHelpers make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend [ 98%] Built target testCrystalForceField make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/Code/ForceField/MMFF /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/Code/ForceField/MMFF /<>/obj-aarch64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 98%] Built target testMolAlign [ 99%] Built target rdDistGeom make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target testMMFFForceField make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/rdkit-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/rdkit-targets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/rdkit-config.cmake -- Installing: /<>/debian/tmp/usr/lib/rdkit-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/stringformat.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/pidPS.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/psmetrics.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/latin1MetricsCache.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/fontinfo.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/pidSVG.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/colors.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWxDc.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWX.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/utils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pagesizes.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pstests.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pidtest.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/testallps.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/pidReportLab.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/formatted-strings.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/README -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/pidPyart.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/Fontmapping.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pid.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pidPDF.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfdoc.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfgen.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfgeom.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfutils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfmetrics.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1 -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/metrics.dat -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/removemedium.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pidPIL.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt4.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/pidTK.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches/Imaging-1.1.1.diff -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw_qax.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/retest.txt -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/comhack.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemutils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/cactvs.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/12h.gif -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/fileutils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test1.gif -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/spiral.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/listutils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test2.gif -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test3.gif -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader_sa.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/FingerprintUtils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader_orig.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Graphs.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SaltRemover.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemicalFeatures.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Crippen.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Utils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Pairs.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Torsions.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Sheridan.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle/FraggleSim.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds/test_MurckoScaffold.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FunctionalGroups.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SATIS.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum/Enumerator.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PropertyMol.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PyMol.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolCatalog.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Descriptors.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/ShowFeats.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/FeatDirUtilsRD.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/TorsionFingerprints.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ReducedGraphs.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolSurf.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/TemplateAlign.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MACCSkeys.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemicalForceFields.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/DbMolSupplier.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/MolSupplier.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Lipinski.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/ClusterMols.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/MolSimilarity.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/FingerprintMols.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PeriodicTable.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/canvasbase.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/spingCanvas.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/FreeSans.ttf -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/IPythonConsole.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/aggCanvas.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/MolDrawing.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/qtCanvas.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/cairoCanvas.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/SimilarityMaps.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/mplCanvas.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/BuildFragmentCatalog.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/EState.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/EState_VSA.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/AtomTypes.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/Fingerprinter.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Randomize.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FilterCatalog.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/EmbedLib.pyc -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/ExcludedVolume.pyc -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/EmbedLib.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/Pharmacophore.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/Pharmacophore.pyc -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PandasTools.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ShowMols.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Recap.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/SubshapeAligner.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/SubshapeBuilder.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/BuilderUtils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/testCombined.py -- Installing: 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Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/SimilarityPickers.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDRandom.pyc -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDLogger.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader_orig-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.mplCanvas.Canvas-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNModel-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Fingerprints-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataManip.Metric-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.BulkTester-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.Stats-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SATIS-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Standardize-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.PruneTree-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.FunctionalGroups-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.KNN.KNNModel-module.html -- Installing: 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Features.FeatDirUtilsRD-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Features.FeatDirUtilsRD-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.CompoundDescriptors.CompoundDescriptorCalculator-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNModel.KNNModel-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.Quantize-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesDupeFilter-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeObjects-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.PruneTree-module.html -- Installing: 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Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbMolSupply-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.DataUtils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.EState.EState_VSA-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.MolKey.MolIdentifierException-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.SimilarityScreener.SimilarityScreener-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Supply-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Recap-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FragmentMatcher-pysrc.html -- Installing: 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-- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ForceField-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeAligner.SubshapeAlignment-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.MLData-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.Transforms-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Descriptors.Parser-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ModelPackage.Packager-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.Quantize-module.html -- Installing: 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Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.BitEnsemble.BitEnsemble-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.DbFpSupplier.ForwardDbFpSupplier-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.FindQuantBounds-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.Uniquer-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeObjects.ShapeWithSkeleton-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.BRICS-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.TemplateExpand-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb-module.html -- Installing: 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Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState.EState_VSA-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemicalFeatures-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/class-tree.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.CrossValidate-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.TreeUtils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.qtCanvas-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MACCSkeys-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.CompositeRun-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState-module.html -- Installing: 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Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DataManip-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Avalon-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.MolSupplier-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Descriptors.CompoundDescriptors-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Composite.Composite-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.LazyGenerator-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Features-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/module-tree.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.StorageUtils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.SLT-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.Network.Network-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Composite-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory.BitClusterer.BitClusterer-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Composite.BayesComposite-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolCatalog-pysrc.html -- Installing: 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-- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.MolDb.FingerprintUtils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.MoleculeDescriptors.MolecularDescriptorCalculator-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-everything.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Standardize-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.MolDb-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.EState-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster.ClusterUtils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fraggle.FraggleSim-pysrc.html -- Installing: 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.BitUtils-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.fmcs.fmcs-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.InchiInfo.InchiInfo-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.EmbedLib-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Pharm2D.LazyGenerator-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/frames.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.SimDivFilters.SimilarityPickers-module.html -- Installing: 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.ActFuncs.Sigmoid-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/epydoc.js -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.TopNContainer-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.FeatMaps.FeatMapParser-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.canvasbase.CanvasBase-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.TorsionFingerprints-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.starting_from-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.Output-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader_sa-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Torsions-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.MolSupplier.MolSupplier-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.SimilarityMaps-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.inchi-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.KNN.KNNRegressionModel-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.aggCanvas-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Clusters.Cluster-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Sheridan-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.SimDivFilters.SimilarityPickers-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.FeatMaps.FeatMaps-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.PyMol.MolViewer-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbPickleSupplier._lazyDataSeq-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Suppliers-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.NetNode-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.InfoTheory.entropy-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.SingleBestBonds-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNClassificationModel-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.DistFunctions-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.files.ReFile-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.MolKey.InchiInfo-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.PyMol-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Matcher-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Features-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.Tree-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.MolSimilarity-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.VectCollection-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.MLUtils.VoteImg-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.MCS-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AllChem-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Generate-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Draw.IPythonConsole-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.fmcs-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.NaiveBayes.CrossValidate-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Draw-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FunctionalGroups-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.SigTree-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.files-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesOutput-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.ShowMols-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.GrowComposite-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.Parser-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbReport.CDXImageTransformer-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Scaffolds-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.ReducedGraphs-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.CompoundDescriptors-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.Node-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState.AtomTypes-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Murtagh-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SmilesSupply-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.InchiInfo-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Fingerprints.FingerprintMols-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Avalon-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.DataUtils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.SimDivFilters-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MCS-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.DbMolSupplier.DbMolSupplier-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Composite.AdjustComposite-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.FeatMaps-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.cairoCanvas-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Filter-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FunctionalGroups.FGHierarchyNode-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Node.VLibNode-class.html -- Installing: 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.DbInfo-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Fraggle.FraggleSim-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FilterCatalog-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.PyMol-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Crippen-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Descriptors-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.ExcludedVolume-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.Parser-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.spingCanvas.Canvas-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesSupply-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesDupeFilter.DupeFilter-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps.FeatMapScoreMode-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Pharm2D.SigFactory-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader_sa-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.MolKey-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.ClusterUtils-pysrc.html -- Installing: 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbInfo-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps.FeatDirScoreMode-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Gobbi_Pharm2D-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Scoring-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SmilesOutput-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.Descriptors-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Utils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.LazySignature-module.html -- Installing: 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeAligner.SubshapeAligner-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.FastSDMolSupplier-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Recap.RecapHierarchyNode-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.IPythonConsole-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.BuildFragmentCatalog.RunDetails-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DistanceGeometry-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbReport-pysrc.html -- Installing: 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.canvasbase-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Pharm3D.ExcludedVolume-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.MolDb.Loader-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.Trainers.Trainer-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Neural.Trainers-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Utils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.DSViewer.Displayable-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataManip.Metric-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.SimilarityScreener.ThresholdScreener-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.DSViewer-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Fingerprints.SimilarityScreener-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Clusters-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory.BitClusterer-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Neural.NetNode-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.CompositeRun-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.DbModule-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.files-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmartsRemover-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.DSViewer-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Subshape.SubshapeBuilder-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SDSupply-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Fraggle-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.DbFpSupplier.RandomAccessDbFpSupplier-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.BuildComposite-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemicalForceFields-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Descriptors-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.MLUtils-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.Descriptors.DescriptorCalculator-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Utils-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolSurf-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.MoleculeDescriptors-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbPickleSupplier-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FragmentCatalog-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolSurf-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.DbMolSupplier.ForwardDbMolSupplier-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.Tree.TreeNode-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.aggCanvas-pysrc.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Chem.Pharm3D.Pharmacophore-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.MLUtils-module.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbReport.CactvsImageTransformer-class.html -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/testBitRanker.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/BitRank.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/testCorrMatGen.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/BitClusterer.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/entropy.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/AnalyzeComposite.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/CompositeRun.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ScreenComposite.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/DecTree.pyc -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/ID3.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/BuildSigTree.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/TreeVis.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/QuantTree.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/SigTree.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/BuildSigTree.pyc -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/CrossValidate.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/Forest.py -- 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Murtagh.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/Descriptors.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/CompoundDescriptors.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/Parser.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/Parser.pyc -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MLUtils -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MLUtils/VoteImg.py -- Installing: 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/<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/CrossValidate.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/Trainers.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/Network.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/architecture.txt -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/NetNode.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/BuildComposite.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/CrossValidate.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/ClassificationModel.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/AdjustComposite.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/Composite.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/BayesComposite.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MatOps.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/files.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring/Scoring.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/EnrichPlot.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDConfig.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDConfig.pyc -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/_py2_pickle.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Avalon -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Avalon/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Transform.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Filter.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Node.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesSupply.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/DbMolSupply.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/demo.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmartsRemover.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesOutput.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SDSupply.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Output.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Supply.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbConnection.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbModule.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbReport.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/StorageUtils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbInfo.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbResultSet.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbUtils.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/epydoc.config -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/TestRunner.py -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDRandom.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Data -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Functional_Group_Hierarchy.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/DTDs -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/DTDs/validate.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/DTDs/RD_Model.dtd -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/DTDs/RD_Dataset.dtd -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/FunctionalGroups.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/RDTests.sqlt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/struchk -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.opt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.trn -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.chk -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Pains -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Pains/test_data -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Pains/test_data/test_set3.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Pains/test_data/wehi_mols.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Pains/test_data/run_tests.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Pains/README.md -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Pains/wehi_pains.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Salts.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/FragmentDescriptors.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/BaseFeatures.fdef -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/rddata.sql -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/NCI -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/NCI/first_5k.tpsa.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/NCI/first_200.tpsa.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/NCI/first_200.props.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/NCI/first_5K.smi -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/SmartsLib -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/SmartsLib/RLewis_smarts.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/bench2.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/SmartsLib/patty_rules.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/Crippen.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Data/RDData.sqlt -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddingPoints.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddingMolecules.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ExploringHits.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/contents.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/MethodOverview.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/EditingMolecules.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/SavingResults.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot1.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ScoringAlignments.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Icon.ico -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D-Splash.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Using.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/index.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/FindingMappings.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/FDefFile.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ViewOptions.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/GettingStarted.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhp -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Index.hhk -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.chm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RD.css -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot1.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Intro.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/References.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/GeneratingStructures.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot2.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot2.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot3.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/MatchingPharmacophores.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhc -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/BuildingBoundsMatrix.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ImproveAlignments.htm -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Code -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Code/Chem -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Code/CodingStandards.md -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Install.rst -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Install.md -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInPython.rst -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/exts -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/exts/extapi.pyc -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/exts/extapi.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Cookbook.rst -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Overview.md -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Overview.rst -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.train.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/input.mol -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.smi -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/AmideBond.rxn -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/cdk2.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/chiral.mol -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/invalid.mol -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.test.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Cookbook.md -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/index.rst -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/RDKit_Book.rst -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/conf.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Makefile -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Cartridge.rst -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_3.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol1.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_2.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_charges.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_1.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_4.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_9.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol2.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_7.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_8.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_rf.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.jpg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_6.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_11.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/indole1.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_0.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_5.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Book/Cartridge.md -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/RD.css -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images/logo.lrg.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images/logo.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images/wiki -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images/logo.inkscape.svg -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Images/logo.ai -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods -- Installing: /<>/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/SA_Score -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data/zim.100.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/SA_Score/sascorer.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/SA_Score/README -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/pzc -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/pzc/readme.md -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.html -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/LEF -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/LEF/README.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/LEF/ClusterFps.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePredict.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/LEF/CreateFps.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePlot.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/LEF/AddLabels.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/NP_Score -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/NP_Score/publicnp.model.gz -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/NP_Score/README -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/NP_Score/npscorer.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.h -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/test_list.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_data -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_data/water_coords_bad2.trx -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_data/water_coords_bad.trx -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_data/water_coords2.trx -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_data/water_coords.trx -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_list.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/CMakeLists.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test.cpp -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/M_Kossner -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/Frames.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/README -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/testData -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.out -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/README -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/pbf.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/Makefile -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.h -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/demo.cpp -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.cpp -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/CMakeLists.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/mol_transform.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/indexing.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/README.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample.smi -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/rfrag.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/create_mmp_db.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/search_mmp_db.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/mmpa/cansmirk.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/rdkit_tversky.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/data -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query.smi -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/cxn_tversky.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/fraggle.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/readme.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Contrib/fraggle/atomcontrib.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/CreateDb.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/SearchDb.py -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Fingerprints.sqlt -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/AtomPairs.sqlt -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Compounds.sqlt -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Descriptors.sqlt -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/loadErrors.txt -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.smi -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.2.smi -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/README -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/moe_like.dsc -- Installing: /<>/debian/tmp/usr/share/RDKit/Projects/DbCLI/TestDbCLI.py -- Installing: /<>/debian/tmp/usr/share/RDKit/README -- Installing: /<>/debian/tmp/usr/share/RDKit/license.txt -- Installing: /<>/debian/tmp/usr/lib/libRDGeneral.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libRDGeneral.so.1 -- Installing: /<>/debian/tmp/usr/lib/libRDGeneral.so -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/Exceptions.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/BadFileException.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/Dict.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/FileParseException.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/Invariant.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/RDLog.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/StreamOps.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/types.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/utils.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/versions.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/LocaleSwitcher.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/Ranking.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/hanoiSort.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp -- Installing: /<>/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp -- Installing: /<>/debian/tmp/usr/lib/libRDBoost.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libRDBoost.so.1 -- Installing: /<>/debian/tmp/usr/lib/libRDBoost.so -- Installing: /<>/debian/tmp/usr/include/rdkit/RDBoost/Wrap.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /<>/debian/tmp/usr/include/rdkit/RDBoost/python.h -- Installing: /<>/debian/tmp/usr/include/rdkit/RDBoost/python_streambuf.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/rdBase.so -- Installing: /<>/debian/tmp/usr/lib/libDataStructs.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libDataStructs.so.1 -- Installing: /<>/debian/tmp/usr/lib/libDataStructs.so -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/base64.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/BitOps.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/BitVect.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/BitVects.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/BitVectUtils.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/DatastructsException.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataStructs/FPBReader.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.so -- Installing: /<>/debian/tmp/usr/lib/libRDGeometryLib.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libRDGeometryLib.so.1 -- Installing: /<>/debian/tmp/usr/lib/libRDGeometryLib.so -- Installing: /<>/debian/tmp/usr/include/rdkit/Geometry/Grid3D.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Geometry/GridUtils.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Geometry/point.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Geometry/Transform2D.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Geometry/Transform3D.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Geometry/Transform.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Geometry/Utils.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.so -- Installing: /<>/debian/tmp/usr/include/rdkit/Numerics/Matrix.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Numerics/SquareMatrix.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Numerics/SymmMatrix.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Numerics/Vector.h -- Installing: /<>/debian/tmp/usr/lib/libAlignment.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libAlignment.so.1 -- Installing: /<>/debian/tmp/usr/lib/libAlignment.so -- Installing: /<>/debian/tmp/usr/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.so -- Installing: /<>/debian/tmp/usr/lib/libEigenSolvers.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libEigenSolvers.so.1 -- Installing: /<>/debian/tmp/usr/lib/libEigenSolvers.so -- Installing: /<>/debian/tmp/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /<>/debian/tmp/usr/lib/libOptimizer.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libOptimizer.so.1 -- Installing: /<>/debian/tmp/usr/lib/libOptimizer.so -- Installing: /<>/debian/tmp/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /<>/debian/tmp/usr/lib/libForceField.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libForceField.so.1 -- Installing: /<>/debian/tmp/usr/lib/libForceField.so -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/Contrib.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/ForceField.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/Params.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ForceField/MMFF/Params.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.so -- Installing: /<>/debian/tmp/usr/lib/libDistGeometry.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libDistGeometry.so.1 -- Installing: /<>/debian/tmp/usr/lib/libDistGeometry.so -- Installing: /<>/debian/tmp/usr/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DistGeom/ChiralSet.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DistGeom/ChiralViolationContrib.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DistGeom/DistViolationContrib.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DistGeom/FourthDimContrib.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.so -- Installing: /<>/debian/tmp/usr/lib/libCatalogs.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libCatalogs.so.1 -- Installing: /<>/debian/tmp/usr/lib/libCatalogs.so -- Installing: /<>/debian/tmp/usr/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Catalogs/Catalog.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Catalogs/CatalogParams.h -- Installing: /<>/debian/tmp/usr/lib/libGraphMol.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libGraphMol.so.1 -- Installing: /<>/debian/tmp/usr/lib/libGraphMol.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Atom.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/atomic_data.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/AtomIterators.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Bond.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/BondIterators.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Canon.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Chirality.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Conformer.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/details.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/GraphMol.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolOps.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolPickler.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/QueryAtom.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/QueryBond.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/QueryOps.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/RDKitBase.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Resonance.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/RingInfo.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Rings.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ROMol.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/RWMol.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SanitException.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/new_canon.h -- Installing: /<>/debian/tmp/usr/lib/libDepictor.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libDepictor.so.1 -- Installing: /<>/debian/tmp/usr/lib/libDepictor.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.so -- Installing: /<>/debian/tmp/usr/lib/libSmilesParse.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libSmilesParse.so.1 -- Installing: /<>/debian/tmp/usr/lib/libSmilesParse.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/primes.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /<>/debian/tmp/usr/lib/libFileParsers.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libFileParsers.so.1 -- Installing: /<>/debian/tmp/usr/lib/libFileParsers.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /<>/debian/tmp/usr/lib/libSubstructMatch.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libSubstructMatch.so.1 -- Installing: /<>/debian/tmp/usr/lib/libSubstructMatch.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /<>/debian/tmp/usr/lib/libChemReactions.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libChemReactions.so.1 -- Installing: /<>/debian/tmp/usr/lib/libChemReactions.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.so -- Installing: /<>/debian/tmp/usr/lib/libChemTransforms.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libChemTransforms.so.1 -- Installing: /<>/debian/tmp/usr/lib/libChemTransforms.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /<>/debian/tmp/usr/lib/libSubgraphs.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libSubgraphs.so.1 -- Installing: /<>/debian/tmp/usr/lib/libSubgraphs.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /<>/debian/tmp/usr/lib/libFilterCatalog.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libFilterCatalog.so.1 -- Installing: /<>/debian/tmp/usr/lib/libFilterCatalog.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.so -- Installing: /<>/debian/tmp/usr/lib/libFragCatalog.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libFragCatalog.so.1 -- Installing: /<>/debian/tmp/usr/lib/libFragCatalog.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.so -- Installing: /<>/debian/tmp/usr/lib/libDescriptors.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libDescriptors.so.1 -- Installing: /<>/debian/tmp/usr/lib/libDescriptors.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.so -- Installing: /<>/debian/tmp/usr/lib/libFingerprints.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libFingerprints.so.1 -- Installing: /<>/debian/tmp/usr/lib/libFingerprints.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /<>/debian/tmp/usr/lib/libPartialCharges.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libPartialCharges.so.1 -- Installing: /<>/debian/tmp/usr/lib/libPartialCharges.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.so -- Installing: /<>/debian/tmp/usr/lib/libMolTransforms.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libMolTransforms.so.1 -- Installing: /<>/debian/tmp/usr/lib/libMolTransforms.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.so -- Installing: /<>/debian/tmp/usr/lib/libForceFieldHelpers.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libForceFieldHelpers.so.1 -- Installing: /<>/debian/tmp/usr/lib/libForceFieldHelpers.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.so -- Installing: /<>/debian/tmp/usr/lib/libDistGeomHelpers.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libDistGeomHelpers.so.1 -- Installing: /<>/debian/tmp/usr/lib/libDistGeomHelpers.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.so -- Installing: /<>/debian/tmp/usr/lib/libMolAlign.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libMolAlign.so.1 -- Installing: /<>/debian/tmp/usr/lib/libMolAlign.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.so -- Installing: /<>/debian/tmp/usr/lib/libMolChemicalFeatures.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libMolChemicalFeatures.so.1 -- Installing: /<>/debian/tmp/usr/lib/libMolChemicalFeatures.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Installing: /<>/debian/tmp/usr/lib/libShapeHelpers.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libShapeHelpers.so.1 -- Installing: /<>/debian/tmp/usr/lib/libShapeHelpers.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.so -- Installing: /<>/debian/tmp/usr/lib/libMolCatalog.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libMolCatalog.so.1 -- Installing: /<>/debian/tmp/usr/lib/libMolCatalog.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h -- Installing: /<>/debian/tmp/usr/include/rdkit/MolDraw2D.h -- Installing: /<>/debian/tmp/usr/include/rdkit/MolDraw2DSVG.h -- Installing: /<>/debian/tmp/usr/include/rdkit/MolDraw2Dwx.h -- Installing: /<>/debian/tmp/usr/include/rdkit/MolDraw2DUtils.h -- Installing: /<>/debian/tmp/usr/lib/libMolDraw2D.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libMolDraw2D.so.1 -- Installing: /<>/debian/tmp/usr/lib/libMolDraw2D.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Installing: /<>/debian/tmp/usr/lib/libFMCS.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libFMCS.so.1 -- Installing: /<>/debian/tmp/usr/lib/libFMCS.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Seed.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SeedSet.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MatchTable.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.so -- Installing: /<>/debian/tmp/usr/lib/libMolHash.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libMolHash.so.1 -- Installing: /<>/debian/tmp/usr/lib/libMolHash.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.so -- Installing: /<>/debian/tmp/usr/lib/libMMPA.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libMMPA.so.1 -- Installing: /<>/debian/tmp/usr/lib/libMMPA.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.so -- Installing: /<>/debian/tmp/usr/lib/libReducedGraphs.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libReducedGraphs.so.1 -- Installing: /<>/debian/tmp/usr/lib/libReducedGraphs.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.so -- Installing: /<>/debian/tmp/usr/lib/libSLNParse.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libSLNParse.so.1 -- Installing: /<>/debian/tmp/usr/lib/libSLNParse.so -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /<>/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.so -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/AndQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/EqualityQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/GreaterQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/LessEqualQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/LessQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/OrQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/Query.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/QueryObjects.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/RangeQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/SetQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Query/XOrQuery.h -- Installing: /<>/debian/tmp/usr/include/rdkit/Features/Feature.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /<>/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Installing: /<>/debian/tmp/usr/lib/libSimDivPickers.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libSimDivPickers.so.1 -- Installing: /<>/debian/tmp/usr/lib/libSimDivPickers.so -- Installing: /<>/debian/tmp/usr/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /<>/debian/tmp/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /<>/debian/tmp/usr/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Installing: /<>/debian/tmp/usr/lib/libhc.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libhc.so.1 -- Installing: /<>/debian/tmp/usr/lib/libhc.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.so -- Installing: /<>/debian/tmp/usr/lib/libInfoTheory.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libInfoTheory.so.1 -- Installing: /<>/debian/tmp/usr/lib/libInfoTheory.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.so -- Installing: /<>/debian/tmp/usr/lib/libChemicalFeatures.so.1.2016.03.5 -- Installing: /<>/debian/tmp/usr/lib/libChemicalFeatures.so.1 -- Installing: /<>/debian/tmp/usr/lib/libChemicalFeatures.so -- Installing: /<>/debian/tmp/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /<>/debian/tmp/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.so -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDPaths.py make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_numpy dh_install --list-missing dh_install: usr/share/RDKit/license.txt exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/README exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/RD.css exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingPoints.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingMolecules.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/ExploringHits.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/contents.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/MethodOverview.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/EditingMolecules.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/SavingResults.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot1.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/ScoringAlignments.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/Icon.ico exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D-Splash.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/Using.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/index.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/FindingMappings.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/FDefFile.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/ViewOptions.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/GettingStarted.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhp exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/Index.hhk exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.chm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/RD.css exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot1.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/Intro.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/References.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/GeneratingStructures.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot2.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot2.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot3.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/MatchingPharmacophores.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhc exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/BuildingBoundsMatrix.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Programs/RDPharm3D/ImproveAlignments.htm exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Code/CodingStandards.md exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Install.rst exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Install.md exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/GettingStartedInPython.rst exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Cookbook.rst exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Overview.md exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Overview.rst exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Cookbook.md exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/index.rst exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/RDKit_Book.rst exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/conf.py exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Makefile exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Cartridge.rst exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/Cartridge.md exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/exts/extapi.pyc exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/exts/extapi.py exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/solubility.train.sdf exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/input.mol exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/bzr.smi exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/bzr.sdf exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/AmideBond.rxn exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/cdk2.sdf exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/chiral.mol exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/invalid.mol exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/solubility.test.sdf exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_3.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/cdk2_mol1.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_2.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/similarity_map_charges.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_1.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_4.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_9.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/cdk2_mol2.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_7.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_8.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/similarity_map_rf.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_10.jpg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_6.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_11.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/indole1.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_0.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_5.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Book/images/picture_10.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Images/logo.lrg.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Images/logo.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Images/logo_plain.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Images/logo.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Images/logo.ai exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods exists in debian/tmp but is not installed to anywhere dh_install: usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt exists in debian/tmp but is not installed to anywhere dh_install: usr/lib/rdkit-targets-none.cmake exists in debian/tmp but is not installed to anywhere dh_install: usr/lib/rdkit-config.cmake exists in debian/tmp but is not installed to anywhere dh_install: usr/lib/rdkit-config-version.cmake exists in debian/tmp but is not installed to anywhere dh_install: usr/lib/rdkit-targets.cmake exists in debian/tmp but is not installed to anywhere mkdir -p /<>/debian/rdkit-doc/usr/share/doc/rdkit/ cp /<>/Docs/Book/_build/latex/RDKit.pdf /<>/debian/rdkit-doc/usr/share/doc/rdkit/ cp -a /<>/Docs/Book/_build/html /<>/debian/rdkit-doc/usr/share/doc/rdkit/ make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=cmake -O--parallel debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs ReleaseNotes.md make[1]: Leaving directory '/<>' debian/rules override_dh_python2 make[1]: Entering directory '/<>' dh_python2 -ppython-rdkit I: dh_python2 fs:322: renaming rdBase.so to rdBase.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdBase.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdChemReactions.so to rdChemReactions.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemReactions.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdChemicalFeatures.so to rdChemicalFeatures.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemicalFeatures.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdDepictor.so to rdDepictor.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDepictor.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdDistGeom.so to rdDistGeom.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDistGeom.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdFMCS.so to rdFMCS.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdFMCS.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdForceFieldHelpers.so to rdForceFieldHelpers.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceFieldHelpers.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMMPA.so to rdMMPA.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMMPA.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMolAlign.so to rdMolAlign.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolAlign.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMolCatalog.so to rdMolCatalog.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolCatalog.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMolChemicalFeatures.so to rdMolChemicalFeatures.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolChemicalFeatures.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMolDescriptors.so to rdMolDescriptors.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDescriptors.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMolHash.so to rdMolHash.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolHash.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMolTransforms.so to rdMolTransforms.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolTransforms.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdPartialCharges.so to rdPartialCharges.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdPartialCharges.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdReducedGraphs.so to rdReducedGraphs.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdReducedGraphs.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdSLNParse.so to rdSLNParse.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSLNParse.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdShapeHelpers.so to rdShapeHelpers.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdShapeHelpers.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdchem.so to rdchem.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdchem.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdfiltercatalog.so to rdfiltercatalog.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfiltercatalog.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdfragcatalog.so to rdfragcatalog.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfragcatalog.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdmolfiles.so to rdmolfiles.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolfiles.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdmolops.so to rdmolops.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolops.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdqueries.so to rdqueries.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdqueries.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMolDraw2D.so to rdMolDraw2D.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDraw2D.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming cDataStructs.so to cDataStructs.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cDataStructs.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdSimDivPickers.so to rdSimDivPickers.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSimDivPickers.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdAlignment.so to rdAlignment.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdAlignment.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdForceField.so to rdForceField.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceField.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdInfoTheory.so to rdInfoTheory.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdInfoTheory.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming cQuantize.so to cQuantize.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cQuantize.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming Clustering.so to Clustering.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: Clustering.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdGeometry.so to rdGeometry.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdGeometry.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming rdMetricMatrixCalc.so to rdMetricMatrixCalc.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMetricMatrixCalc.aarch64-linux-gnu.so I: dh_python2 fs:322: renaming DistGeom.so to DistGeom.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: DistGeom.aarch64-linux-gnu.so dh_numpy -ppython-rdkit make[1]: Leaving directory '/<>' dh_lintian -a -O--buildsystem=cmake -O--parallel dh_perl -a -O--buildsystem=cmake -O--parallel dh_link -a -O--buildsystem=cmake -O--parallel dh_strip_nondeterminism -a -O--buildsystem=cmake -O--parallel dh_compress -a -O--buildsystem=cmake -O--parallel dh_fixperms -a -O--buildsystem=cmake -O--parallel dh_strip -a -O--buildsystem=cmake -O--parallel dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: python-rdkit librdkit1 librdkit-dev dh_strip debug symbol extraction: packages to act on: python-rdkit librdkit1 librdkit-dev dh_strip debug symbol extraction: ignored packages: /usr/bin/pkg_create_dbgsym: ignoring python* package: python-rdkit Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package librdkit1: unused substitution variable ${python:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 librdkit-dev has no unstripped objects, ignoring find: ‘/<>/debian/librdkit-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /<>/debian/librdkit-dev-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a -O--buildsystem=cmake -O--parallel dh_shlibdeps -a -O--buildsystem=cmake -O--parallel dh_installdeb -a -O--buildsystem=cmake -O--parallel dh_gencontrol -a -O--buildsystem=cmake -O--parallel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package librdkit1: unused substitution variable ${python:Depends} dpkg-gencontrol: warning: Depends field of package librdkit-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package librdkit-dev: unused substitution variable ${python:Depends} dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: python-rdkit librdkit1 librdkit-dev dh_gencontrol debug symbol wrapper: packages to act on: python-rdkit librdkit1 librdkit-dev dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/python-rdkit-dbgsym, skipping package python-rdkit dh_gencontrol debug symbol wrapper: processing package librdkit1 (pkgdir debian/librdkit1, ddeb package dir debian/librdkit1-dbgsym) dh_gencontrol debug symbol wrapper: building librdkit1-dbgsym_201603.5-2_arm64.ddeb dpkg-deb: building package 'librdkit1-dbgsym' in '../librdkit1-dbgsym_201603.5-2_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile librdkit1-dbgsym_201603.5-2_arm64.ddeb libs extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: no debian/librdkit-dev-dbgsym, skipping package librdkit-dev dh_md5sums -a -O--buildsystem=cmake -O--parallel dh_builddeb -a -O--buildsystem=cmake -O--parallel INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing python-rdkit (in debian/python-rdkit); do_strip: , oemstrip: pkgstriptranslations: processing librdkit1 (in debian/librdkit1); do_strip: , oemstrip: pkgstriptranslations: processing librdkit-dev (in debian/librdkit-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-rdkit/DEBIAN/control, package python-rdkit, directory debian/python-rdkit .. removing usr/share/doc/python-rdkit/changelog.gz Searching for duplicated docs in dependency librdkit1... symlinking changelog.Debian.gz in python-rdkit to file in librdkit1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-rdkit ... o pkgstripfiles: PNG optimization (1/0) for package python-rdkit took 0 s dpkg-deb: building package 'python-rdkit' in '../python-rdkit_201603.5-2_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librdkit1/DEBIAN/control, package librdkit1, directory debian/librdkit1 .. removing usr/share/doc/librdkit1/changelog.gz pkgstripfiles: Truncating usr/share/doc/librdkit1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package librdkit1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librdkit1' in '../librdkit1_201603.5-2_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librdkit-dev/DEBIAN/control, package librdkit-dev, directory debian/librdkit-dev .. removing usr/share/doc/librdkit-dev/changelog.gz Searching for duplicated docs in dependency librdkit1... symlinking changelog.Debian.gz in librdkit-dev to file in librdkit1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package librdkit-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librdkit-dev' in '../librdkit-dev_201603.5-2_arm64.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../rdkit_201603.5-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build rdkit-201603.5 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170317-1341 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ rdkit_201603.5-2_arm64.changes: ------------------------------- Format: 1.8 Date: Mon, 07 Nov 2016 14:50:50 +0200 Source: rdkit Binary: python-rdkit rdkit-doc rdkit-data librdkit1 librdkit-dev Architecture: arm64 Version: 201603.5-2 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: librdkit-dev - Collection of cheminformatics and machine-learning software (deve librdkit1 - Collection of cheminformatics and machine-learning software (shar python-rdkit - Collection of cheminformatics and machine-learning software rdkit-data - Collection of cheminformatics and machine-learning software (data rdkit-doc - Collection of cheminformatics and machine-learning software (docu Closes: 831264 Changes: rdkit (201603.5-2) unstable; urgency=medium . * Team upload. * debian/control (Build-Depends): Added pandoc and texlive-generic-extra. (Closes: #831264) * debian/rules (override_dh_auto_configure): Added -DRDK_OPTIMIZE_NATIVE=OFF to prevent FTBFS on ppc64el. Checksums-Sha1: b9bda6bf338981a98e8449966e9487be1f17cb02 186436 librdkit-dev_201603.5-2_arm64.deb 71e86829519df367c5a8513e5044b9e952e41240 23753878 librdkit1-dbgsym_201603.5-2_arm64.ddeb 445354a92200bc4d9de3d8a878f873d76c0e7c84 1776568 librdkit1_201603.5-2_arm64.deb a3c86c240e2fe330db54343e0233ff55caed45d4 3219452 python-rdkit_201603.5-2_arm64.deb Checksums-Sha256: b9558587e9a55acc05824ae7b7e249668e0d24e6c8bc6841b3814ccaa1e89b42 186436 librdkit-dev_201603.5-2_arm64.deb 22b3f667dac541c33800ed01dddc48cea9b7f567c4075fffa427f92097d03d6c 23753878 librdkit1-dbgsym_201603.5-2_arm64.ddeb f673b8a3032278368921ade60ea570b83f05094b15ff25affc9f04213b4b212a 1776568 librdkit1_201603.5-2_arm64.deb 4a99547382ccb2a555cc92a6f1a3d224f76080e3738fea28bc22429fbb0543a6 3219452 python-rdkit_201603.5-2_arm64.deb Files: 7fe6fcf4f13fd39cbdf4983da34d3eb4 186436 libdevel optional librdkit-dev_201603.5-2_arm64.deb 02ddfdcb83587772e396d6a0ba1fa95e 23753878 libs extra librdkit1-dbgsym_201603.5-2_arm64.ddeb 7585669a89ac522fbb3eff0706eef0ff 1776568 libs optional librdkit1_201603.5-2_arm64.deb 2457eb968c865c36ed48c13e05ea6713 3219452 python optional python-rdkit_201603.5-2_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ librdkit-dev_201603.5-2_arm64.deb --------------------------------- new debian package, version 2.0. size 186436 bytes: control archive=7715 bytes. 1581 bytes, 38 lines control 18467 bytes, 226 lines md5sums Package: librdkit-dev Source: rdkit Version: 201603.5-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1354 Depends: librdkit1 (= 201603.5-2) Section: libdevel Priority: optional Homepage: http://www.rdkit.org Description: Collection of cheminformatics and machine-learning software (development files) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan alogrithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. . This package contains the header files. drwxr-xr-x root/root 0 2016-11-07 12:50 ./ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/Catalogs/ -rw-r--r-- root/root 16493 2016-10-10 08:34 ./usr/include/rdkit/Catalogs/Catalog.h -rw-r--r-- root/root 1309 2016-10-10 08:34 ./usr/include/rdkit/Catalogs/CatalogEntry.h -rw-r--r-- root/root 1169 2016-10-10 08:34 ./usr/include/rdkit/Catalogs/CatalogParams.h drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/ChemicalFeatures/ -rw-r--r-- root/root 991 2016-10-10 08:34 ./usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -rw-r--r-- root/root 2754 2016-10-10 08:34 ./usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/DataManip/ drwxr-xr-x root/root 0 2016-11-07 12:50 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08:34 ./usr/include/rdkit/DataStructs/ExplicitBitVect.h -rw-r--r-- root/root 9338 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/FPBReader.h -rw-r--r-- root/root 2904 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/SparseBitVect.h -rw-r--r-- root/root 16329 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/SparseIntVect.h -rw-r--r-- root/root 1147 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/base64.h drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/DistGeom/ -rw-r--r-- root/root 3405 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/BoundsMatrix.h -rw-r--r-- root/root 1574 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/ChiralSet.h -rw-r--r-- root/root 3493 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/ChiralViolationContrib.h -rw-r--r-- root/root 6996 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/DistGeomUtils.h -rw-r--r-- root/root 1769 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/DistViolationContrib.h -rw-r--r-- root/root 1923 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/FourthDimContrib.h -rw-r--r-- root/root 1101 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/TriangleSmooth.h drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/Features/ -rw-r--r-- root/root 2858 2016-10-10 08:34 ./usr/include/rdkit/Features/Feature.h drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/ForceField/ -rw-r--r-- root/root 1046 2016-10-10 08:34 ./usr/include/rdkit/ForceField/Contrib.h -rw-r--r-- root/root 6512 2016-10-10 08:34 ./usr/include/rdkit/ForceField/ForceField.h drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/ForceField/MMFF/ -rw-r--r-- root/root 2383 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/AngleBend.h -rw-r--r-- root/root 2041 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -rw-r--r-- root/root 2000 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/BondStretch.h -rw-r--r-- root/root 633 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/Contribs.h -rw-r--r-- root/root 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drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/include/rdkit/SimDivPickers/ -rw-r--r-- root/root 2236 2016-10-10 08:34 ./usr/include/rdkit/SimDivPickers/DistPicker.h -rw-r--r-- root/root 3613 2016-10-10 08:34 ./usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -rw-r--r-- root/root 7146 2016-10-10 08:34 ./usr/include/rdkit/SimDivPickers/MaxMinPicker.h drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/ lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libAlignment.so -> libAlignment.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libCatalogs.so -> libCatalogs.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libChemReactions.so -> libChemReactions.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libChemTransforms.so -> libChemTransforms.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libChemicalFeatures.so -> libChemicalFeatures.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libDataStructs.so -> libDataStructs.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libDepictor.so -> libDepictor.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libDescriptors.so -> libDescriptors.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libDistGeomHelpers.so -> libDistGeomHelpers.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libDistGeometry.so -> libDistGeometry.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libEigenSolvers.so -> libEigenSolvers.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFMCS.so -> libFMCS.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFileParsers.so -> libFileParsers.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFilterCatalog.so -> libFilterCatalog.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFingerprints.so -> libFingerprints.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libForceField.so -> libForceField.so.1 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libForceFieldHelpers.so -> libForceFieldHelpers.so.1 lrwxrwxrwx 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2016-11-07 12:50 ./usr/lib/libhc.so -> libhc.so.1 drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/doc/librdkit-dev/ lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/share/doc/librdkit-dev/changelog.Debian.gz -> ../librdkit1/changelog.Debian.gz -rw-r--r-- root/root 7580 2016-08-30 14:38 ./usr/share/doc/librdkit-dev/copyright librdkit1_201603.5-2_arm64.deb ------------------------------ new debian package, version 2.0. size 1776568 bytes: control archive=2719 bytes. 1753 bytes, 38 lines control 3087 bytes, 43 lines md5sums 1069 bytes, 40 lines shlibs 60 bytes, 2 lines triggers Package: librdkit1 Source: rdkit Version: 201603.5-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8010 Depends: libboost-python1.62.0, libboost-regex1.62.0, libboost-serialization1.62.0, libboost-system1.62.0, libboost-thread1.62.0, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libpython2.7 (>= 2.7), libstdc++6 (>= 5.2) Section: libs Priority: optional Homepage: http://www.rdkit.org Description: Collection of cheminformatics and machine-learning software (shared libraries) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan alogrithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. . This package contains the shared libraries. drwxr-xr-x root/root 0 2016-11-07 12:50 ./ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/ lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libAlignment.so.1 -> libAlignment.so.1.2016.03.5 -rw-r--r-- root/root 31088 2016-11-07 12:50 ./usr/lib/libAlignment.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libCatalogs.so.1 -> libCatalogs.so.1.2016.03.5 -rw-r--r-- root/root 10288 2016-11-07 12:50 ./usr/lib/libCatalogs.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libChemReactions.so.1 -> libChemReactions.so.1.2016.03.5 -rw-r--r-- root/root 290328 2016-11-07 12:50 ./usr/lib/libChemReactions.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libChemTransforms.so.1 -> libChemTransforms.so.1.2016.03.5 -rw-r--r-- root/root 212272 2016-11-07 12:50 ./usr/lib/libChemTransforms.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 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libDistGeometry.so.1.2016.03.5 -rw-r--r-- root/root 137736 2016-11-07 12:50 ./usr/lib/libDistGeometry.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libEigenSolvers.so.1 -> libEigenSolvers.so.1.2016.03.5 -rw-r--r-- root/root 26976 2016-11-07 12:50 ./usr/lib/libEigenSolvers.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFMCS.so.1 -> libFMCS.so.1.2016.03.5 -rw-r--r-- root/root 248880 2016-11-07 12:50 ./usr/lib/libFMCS.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFileParsers.so.1 -> libFileParsers.so.1.2016.03.5 -rw-r--r-- root/root 766312 2016-11-07 12:50 ./usr/lib/libFileParsers.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFilterCatalog.so.1 -> libFilterCatalog.so.1.2016.03.5 -rw-r--r-- root/root 760984 2016-11-07 12:50 ./usr/lib/libFilterCatalog.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFingerprints.so.1 -> libFingerprints.so.1.2016.03.5 -rw-r--r-- root/root 224304 2016-11-07 12:50 ./usr/lib/libFingerprints.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libForceField.so.1 -> libForceField.so.1.2016.03.5 -rw-r--r-- root/root 670504 2016-11-07 12:50 ./usr/lib/libForceField.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libForceFieldHelpers.so.1 -> libForceFieldHelpers.so.1.2016.03.5 -rw-r--r-- root/root 343800 2016-11-07 12:50 ./usr/lib/libForceFieldHelpers.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libFragCatalog.so.1 -> libFragCatalog.so.1.2016.03.5 -rw-r--r-- root/root 142256 2016-11-07 12:50 ./usr/lib/libFragCatalog.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libGraphMol.so.1 -> libGraphMol.so.1.2016.03.5 -rw-r--r-- root/root 1215856 2016-11-07 12:50 ./usr/lib/libGraphMol.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libInfoTheory.so.1 -> libInfoTheory.so.1.2016.03.5 -rw-r--r-- root/root 43552 2016-11-07 12:50 ./usr/lib/libInfoTheory.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libMMPA.so.1 -> libMMPA.so.1.2016.03.5 -rw-r--r-- root/root 47496 2016-11-07 12:50 ./usr/lib/libMMPA.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libMolAlign.so.1 -> libMolAlign.so.1.2016.03.5 -rw-r--r-- root/root 207800 2016-11-07 12:50 ./usr/lib/libMolAlign.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libMolCatalog.so.1 -> libMolCatalog.so.1.2016.03.5 -rw-r--r-- root/root 39408 2016-11-07 12:50 ./usr/lib/libMolCatalog.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libMolChemicalFeatures.so.1 -> libMolChemicalFeatures.so.1.2016.03.5 -rw-r--r-- root/root 133992 2016-11-07 12:50 ./usr/lib/libMolChemicalFeatures.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libMolDraw2D.so.1 -> libMolDraw2D.so.1.2016.03.5 -rw-r--r-- root/root 109392 2016-11-07 12:50 ./usr/lib/libMolDraw2D.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libMolHash.so.1 -> libMolHash.so.1.2016.03.5 -rw-r--r-- root/root 101040 2016-11-07 12:50 ./usr/lib/libMolHash.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libMolTransforms.so.1 -> libMolTransforms.so.1.2016.03.5 -rw-r--r-- root/root 84696 2016-11-07 12:50 ./usr/lib/libMolTransforms.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libOptimizer.so.1 -> libOptimizer.so.1.2016.03.5 -rw-r--r-- root/root 6016 2016-11-07 12:50 ./usr/lib/libOptimizer.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libPartialCharges.so.1 -> libPartialCharges.so.1.2016.03.5 -rw-r--r-- root/root 76512 2016-11-07 12:50 ./usr/lib/libPartialCharges.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libRDBoost.so.1 -> libRDBoost.so.1.2016.03.5 -rw-r--r-- root/root 10368 2016-11-07 12:50 ./usr/lib/libRDBoost.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libRDGeneral.so.1 -> libRDGeneral.so.1.2016.03.5 -rw-r--r-- root/root 166584 2016-11-07 12:50 ./usr/lib/libRDGeneral.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libRDGeometryLib.so.1 -> libRDGeometryLib.so.1.2016.03.5 -rw-r--r-- root/root 117400 2016-11-07 12:50 ./usr/lib/libRDGeometryLib.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libReducedGraphs.so.1 -> libReducedGraphs.so.1.2016.03.5 -rw-r--r-- root/root 64216 2016-11-07 12:50 ./usr/lib/libReducedGraphs.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libSLNParse.so.1 -> libSLNParse.so.1.2016.03.5 -rw-r--r-- root/root 318936 2016-11-07 12:50 ./usr/lib/libSLNParse.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libShapeHelpers.so.1 -> libShapeHelpers.so.1.2016.03.5 -rw-r--r-- root/root 27048 2016-11-07 12:50 ./usr/lib/libShapeHelpers.so.1.2016.03.5 lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/lib/libSimDivPickers.so.1 -> libSimDivPickers.so.1.2016.03.5 -rw-r--r-- root/root 26960 2016-11-07 12:50 ./usr/lib/libSimDivPickers.so.1.2016.03.5 lrwxrwxrwx 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root/root 7580 2016-08-30 14:38 ./usr/share/doc/librdkit1/copyright drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/lintian/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 107 2016-08-30 14:38 ./usr/share/lintian/overrides/librdkit1 python-rdkit_201603.5-2_arm64.deb --------------------------------- new debian package, version 2.0. size 3219452 bytes: control archive=36767 bytes. 1881 bytes, 39 lines control 141931 bytes, 1272 lines md5sums 162 bytes, 9 lines * postinst #!/bin/sh 261 bytes, 14 lines * prerm #!/bin/sh Package: python-rdkit Source: rdkit Version: 201603.5-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 34444 Depends: fonts-freefont-ttf, rdkit-data, python (<< 2.8), python (>= 2.7~), python-numpy (>= 1:1.10.0~b1), python-numpy-abi9, python:any (<< 2.8), python:any (>= 2.7.5-5~), libboost-python1.62.0, libboost-system1.62.0, libboost-thread1.62.0, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libpython2.7 (>= 2.7), librdkit1, libstdc++6 (>= 5.2) Suggests: rdkit-doc Provides: python2.7-rdkit Section: python Priority: optional Homepage: http://www.rdkit.org Description: Collection of cheminformatics and machine-learning software RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan alogrithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. Python-Version: 2.7 drwxr-xr-x root/root 0 2016-11-07 12:50 ./ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/dist-packages/rdkit/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/dist-packages/rdkit/Avalon/ -rw-r--r-- root/root 0 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/Avalon/__init__.py drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/dist-packages/rdkit/Chem/ -rw-r--r-- root/root 19487 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/Chem/AllChem.py drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/ -rw-r--r-- root/root 4247 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Pairs.py -rw-r--r-- root/root 3274 2016-10-10 08:34 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root/root 9638 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWxDc.py -rw-r--r-- root/root 155 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/__init__.py -rw-r--r-- root/root 8019 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/colors.py drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/dist-packages/rdkit/sping/examples/ -rw-r--r-- root/root 1312 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/examples/formatted-strings.py -rw-r--r-- root/root 2867 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -rw-r--r-- root/root 2899 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -rw-r--r-- root/root 541 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/pagesizes.py drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/dist-packages/rdkit/sping/patches/ -rw-r--r-- root/root 1197 2016-10-10 08:34 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./usr/lib/python2.7/dist-packages/rdkit/sping/util/ -rw-r--r-- root/root 13430 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/util/HTMLPiddler.py -rw-r--r-- root/root 16 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/util/__init__.py -rw-r--r-- root/root 366 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/sping/utils.py drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/lib/python2.7/dist-packages/rdkit/utils/ -rw-r--r-- root/root 2770 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/12h.gif -rw-r--r-- root/root 0 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/__init__.py -rw-r--r-- root/root 1696 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/cactvs.py -rw-r--r-- root/root 11711 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw.py -rw-r--r-- root/root 2430 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw_qax.py -rw-r--r-- root/root 4708 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/chemutils.py -rw-r--r-- root/root 2285 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/comhack.py -rw-r--r-- root/root 1032 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/fileutils.py -rw-r--r-- root/root 1124 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/listutils.py -rw-r--r-- root/root 113 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/retest.txt -rw-r--r-- root/root 1840 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/spiral.py -rw-r--r-- root/root 16086 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/test1.gif -rw-r--r-- root/root 11626 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/test2.gif -rw-r--r-- root/root 6682 2016-10-10 08:34 ./usr/lib/python2.7/dist-packages/rdkit/utils/test3.gif drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/doc/python-rdkit/ -rw-r--r-- root/root 225 2016-08-30 14:38 ./usr/share/doc/python-rdkit/TODO.Debian lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/share/doc/python-rdkit/changelog.Debian.gz -> ../librdkit1/changelog.Debian.gz -rw-r--r-- root/root 7580 2016-08-30 14:38 ./usr/share/doc/python-rdkit/copyright drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/pyshared/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/pyshared/rdkit/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/pyshared/rdkit/Chem/ drwxr-xr-x root/root 0 2016-11-07 12:50 ./usr/share/pyshared/rdkit/Chem/Draw/ lrwxrwxrwx root/root 0 2016-11-07 12:50 ./usr/share/pyshared/rdkit/Chem/Draw/FreeSans.ttf -> ../../../../fonts/truetype/freefont/FreeSans.ttf +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 1833584 Build-Time: 3200 Distribution: zesty-proposed Host Architecture: arm64 Install-Time: 212 Job: rdkit_201603.5-2.dsc Machine Architecture: arm64 Package: rdkit Package-Time: 3418 Source-Version: 201603.5-2 Space: 1833584 Status: successful Version: 201603.5-2 -------------------------------------------------------------------------------- Finished at 20170317-1341 Build needed 00:56:58, 1833584k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11160516'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11160516/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11160516'] Unmounting chroot for build PACKAGEBUILD-11160516... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11160516'] Removing build PACKAGEBUILD-11160516