https://launchpad.net/ubuntu/+source/rdkit/201809.1+dfsg-6/+build/16338414 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-032 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_166 python-lpbuildd_166 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 1 Feb 21:05:24 ntpdate[1808]: adjust time server 10.211.37.1 offset -0.002703 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16338414 /home/buildd/filecache-default/1b8bd95dfc080fb8062b439d66609df4d6cce84f Creating target for build PACKAGEBUILD-16338414 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16338414 Starting target for build PACKAGEBUILD-16338414 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16338414 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16338414 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16338414 Updating target for build PACKAGEBUILD-16338414 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 Packages [997 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe i386 Packages [8924 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5217 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main i386 Packages [77.2 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [36.8 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe i386 Packages [221 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [122 kB] Fetched 16.6 MB in 5s (3355 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libreadline7 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libreadline8 The following packages will be upgraded: adduser apt bash binutils binutils-common binutils-i686-linux-gnu bsdutils ca-certificates coreutils cpp-8 dash debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-8 gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libitm1 libjson-c3 liblz4-1 liblzma5 libmount1 libmpfr6 libmpx2 libnettle6 libpng16-16 libquadmath0 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login mount passwd readline-common sed systemd systemd-sysv tar tzdata util-linux xz-utils zlib1g 89 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 58.4 MB of archives. After this operation, 7385 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main i386 debianutils i386 4.8.6.1 [85.9 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main i386 bash i386 5.0-2ubuntu1 [677 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main i386 bsdutils i386 1:2.33.1-0.1ubuntu1 [65.9 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main i386 coreutils i386 8.30-1ubuntu1 [1316 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 tar i386 1.30+dfsg-4 [264 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main i386 dpkg i386 1.19.2ubuntu2 [1124 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main i386 debconf all 1.5.70 [122 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main i386 dash i386 0.5.10.2-4ubuntu1 [90.8 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main i386 findutils i386 4.6.0+git+20190105-2 [343 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main i386 grep i386 3.3-1 [155 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main i386 gzip i386 1.9-3 [94.8 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main i386 libsmartcols1 i386 2.33.1-0.1ubuntu1 [98.7 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main i386 libuuid1 i386 2.33.1-0.1ubuntu1 [21.9 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main i386 libblkid1 i386 2.33.1-0.1ubuntu1 [147 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main i386 libfdisk1 i386 2.33.1-0.1ubuntu1 [190 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main i386 libmount1 i386 2.33.1-0.1ubuntu1 [158 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main i386 fdisk i386 2.33.1-0.1ubuntu1 [126 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main i386 login i386 1:4.5-1.1ubuntu1 [266 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main i386 util-linux i386 2.33.1-0.1ubuntu1 [1026 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main i386 sed i386 4.7-1 [193 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main i386 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main i386 libnettle6 i386 3.4.1-1 [128 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main i386 libhogweed4 i386 3.4.1-1 [142 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main i386 libgnutls30 i386 3.6.5-2ubuntu1 [770 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libubsan1 i386 8.2.0-16ubuntu1 [138 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-8-base i386 8.2.0-16ubuntu1 [18.8 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgcc1 i386 1:8.2.0-16ubuntu1 [48.1 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgomp1 i386 8.2.0-16ubuntu1 [80.7 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libitm1 i386 8.2.0-16ubuntu1 [30.8 kB] Get:30 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libatomic1 i386 8.2.0-16ubuntu1 [9612 B] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libasan5 i386 8.2.0-16ubuntu1 [375 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libmpx2 i386 8.2.0-16ubuntu1 [13.0 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libquadmath0 i386 8.2.0-16ubuntu1 [208 kB] Get:34 http://ftpmaster.internal/ubuntu disco-proposed/main i386 cpp-8 i386 8.2.0-16ubuntu1 [8977 kB] Get:35 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libcc1-0 i386 8.2.0-16ubuntu1 [49.0 kB] Get:36 http://ftpmaster.internal/ubuntu disco-proposed/main i386 g++-8 i386 8.2.0-16ubuntu1 [10.1 MB] Get:37 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gcc-8 i386 8.2.0-16ubuntu1 [9841 kB] Get:38 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgcc-8-dev i386 8.2.0-16ubuntu1 [2305 kB] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libstdc++-8-dev i386 8.2.0-16ubuntu1 [1588 kB] Get:40 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libstdc++6 i386 8.2.0-16ubuntu1 [429 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main i386 libmpfr6 i386 4.0.2-1 [246 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main i386 zlib1g i386 1:1.2.11.dfsg-1ubuntu2 [55.9 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main i386 libbinutils i386 2.31.1-11ubuntu1 [519 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main i386 binutils-common i386 2.31.1-11ubuntu1 [194 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main i386 binutils i386 2.31.1-11ubuntu1 [3392 B] Get:46 http://ftpmaster.internal/ubuntu disco/main i386 binutils-i686-linux-gnu i386 2.31.1-11ubuntu1 [1988 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main i386 liblz4-1 i386 1.8.3-1ubuntu1 [61.2 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main i386 liblzma5 i386 5.2.4-1 [99.7 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libudev1 i386 240-5ubuntu2 [73.3 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main i386 libzstd1 i386 1.3.8+dfsg-3 [225 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main i386 libapt-pkg5.0 i386 1.8.0~beta1 [890 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main i386 libsemanage-common all 2.8-2 [7016 B] Get:53 http://ftpmaster.internal/ubuntu disco/main i386 libsemanage1 i386 2.8-2 [94.2 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main i386 passwd i386 1:4.5-1.1ubuntu1 [817 kB] Get:55 http://ftpmaster.internal/ubuntu disco-proposed/main i386 adduser all 3.118ubuntu1 [163 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main i386 libgpg-error0 i386 1.33-3 [62.0 kB] Get:57 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gpgv i386 2.2.12-1ubuntu3 [217 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main i386 apt i386 1.8.0~beta1 [1197 kB] Get:59 http://ftpmaster.internal/ubuntu disco-proposed/main i386 systemd-sysv i386 240-5ubuntu2 [9388 B] Get:60 http://ftpmaster.internal/ubuntu disco/main i386 mount i386 2.33.1-0.1ubuntu1 [117 kB] Get:61 http://ftpmaster.internal/ubuntu disco-proposed/main i386 systemd i386 240-5ubuntu2 [3463 kB] Get:62 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libsystemd0 i386 240-5ubuntu2 [267 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main i386 libext2fs2 i386 1.44.5-1 [186 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main i386 e2fsprogs i386 1.44.5-1 [550 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main i386 init i386 1.56+nmu1 [6076 B] Get:66 http://ftpmaster.internal/ubuntu disco/main i386 libcap-ng0 i386 0.7.9-2 [11.1 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main i386 libdb5.3 i386 5.3.28+dfsg1-0.3 [737 kB] Get:68 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libdebconfclient0 i386 0.246ubuntu1 [6436 B] Get:69 http://ftpmaster.internal/ubuntu disco/main i386 libcom-err2 i386 1.44.5-1 [9708 B] Get:70 http://ftpmaster.internal/ubuntu disco/main i386 libss2 i386 1.44.5-1 [11.6 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main i386 ca-certificates all 20190110 [146 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main i386 libargon2-1 i386 0~20171227-0.2 [23.5 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main i386 libjson-c3 i386 0.12.1+ds-2 [24.0 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main i386 readline-common all 8.0-1 [53.4 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main i386 libreadline8 i386 8.0-1 [133 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main i386 libsqlite3-0 i386 3.26.0+fossilbc891ac6b-2 [566 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main i386 tzdata all 2018i-1 [189 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main i386 xz-utils i386 5.2.4-1 [87.0 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main i386 libgdbm6 i386 1.18.1-2build1 [32.0 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main i386 libpng16-16 i386 1.6.36-3 [187 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main i386 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main i386 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main i386 e2fslibs i386 1.44.5-1 [2704 B] Get:84 http://ftpmaster.internal/ubuntu disco/main i386 libassuan0 i386 2.5.2-1 [37.4 kB] Get:85 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gpg i386 2.2.12-1ubuntu3 [514 kB] Get:86 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gpgconf i386 2.2.12-1ubuntu3 [130 kB] Get:87 http://ftpmaster.internal/ubuntu disco-proposed/main i386 gpg-agent i386 2.2.12-1ubuntu3 [249 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main i386 libcomerr2 i386 1.44.5-1 [2700 B] Get:89 http://ftpmaster.internal/ubuntu disco/main i386 libgdbm-compat4 i386 1.18.1-2build1 [6708 B] Get:90 http://ftpmaster.internal/ubuntu disco-proposed/main i386 linux-libc-dev i386 4.19.0-12.13 [1070 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.4 MB in 1s (52.1 MB/s) (Reading database ... 12659 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16338414 i386 disco-proposed -c chroot:build-PACKAGEBUILD-16338414 --arch=i386 --dist=disco-proposed --nolog rdkit_201809.1+dfsg-6.dsc Initiating build PACKAGEBUILD-16338414 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-032.buildd +==============================================================================+ | rdkit 201809.1+dfsg-6 (i386) 01 Feb 2019 21:06 | +==============================================================================+ Package: rdkit Version: 201809.1+dfsg-6 Source Version: 201809.1+dfsg-6 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/rdkit-fHYcdV/rdkit-201809.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/rdkit-fHYcdV' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16338414/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- rdkit_201809.1+dfsg-6.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-yjxliw/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-yjxliw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-yjxliw/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-yjxliw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-yjxliw/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-yjxliw/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (159 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-yjxliw/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12692 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, imagemagick, latexmk, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libschroedinger-coordgenlibs-dev, libschroedinger-maeparser-dev, librsvg2-bin, libsqlite3-dev, pandoc, postgresql-server-dev-all, python-dev, python-pil, python-numpy, python-pandas, python3-sphinx, python3-recommonmark, rapidjson-dev, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended Filtered Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, imagemagick, latexmk, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libschroedinger-coordgenlibs-dev, libschroedinger-maeparser-dev, librsvg2-bin, libsqlite3-dev, pandoc, postgresql-server-dev-all, python-dev, python-pil, python-numpy, python-pandas, python3-sphinx, python3-recommonmark, rapidjson-dev, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended dpkg-deb: building package 'sbuild-build-depends-rdkit-dummy' in '/<>/resolver-zoEbwi/apt_archive/sbuild-build-depends-rdkit-dummy.deb'. Ign:1 copy:/<>/resolver-zoEbwi/apt_archive ./ InRelease Get:2 copy:/<>/resolver-zoEbwi/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-zoEbwi/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-zoEbwi/apt_archive ./ Sources [413 B] Get:5 copy:/<>/resolver-zoEbwi/apt_archive ./ Packages [745 B] Fetched 3277 B in 0s (169 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install rdkit build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev binfmt-support bison bsdmainutils clang-7 cmake cmake-data dbus dbus-user-session dconf-gsettings-backend dconf-service dctrl-tools debhelper dh-autoreconf dh-python dh-strip-nondeterminism distro-info-data docutils-common doxygen dwz file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base glib-networking glib-networking-common glib-networking-services groff-base gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian latexmk lib64atomic1 lib64gcc1 lib64stdc++6 libarchive-zip-perl libarchive13 libasn1-8-heimdal libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas3 libboost-atomic1.67-dev libboost-atomic1.67.0 libboost-chrono1.67-dev libboost-chrono1.67.0 libboost-date-time1.67-dev libboost-date-time1.67.0 libboost-dev libboost-python-dev libboost-python1.67-dev libboost-python1.67.0 libboost-regex-dev libboost-regex1.67-dev libboost-regex1.67.0 libboost-serialization1.67-dev libboost-serialization1.67.0 libboost-system-dev libboost-system1.67-dev libboost-system1.67.0 libboost-thread-dev libboost-thread1.67-dev libboost-thread1.67.0 libboost1.67-dev libbrotli1 libbsd0 libc6-amd64 libcairo-gobject2 libcairo2 libclang-common-7-dev libclang1-7 libcolord2 libcroco3 libcups2 libcupsimage2 libcurl4 libdatrie1 libdbus-1-3 libdconf1 libedit2 libelf1 libepoxy0 libexpat1 libexpat1-dev libffi-dev libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgc1c2 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgssapi3-heimdal libgtk-3-0 libgtk-3-common libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp1 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblqr-1-0 libltdl7 liblua5.1-0 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmpdec2 libncurses-dev libnghttp2-14 libobjc-8-dev libobjc4 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpotrace0 libpq-dev libpq5 libproxy1v5 libpsl5 libptexenc1 libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib librest-0.7-0 librhash0 libroken18-heimdal librsvg2-2 librsvg2-bin librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libschroedinger-coordgenlibs-dev libschroedinger-coordgenlibs1 libschroedinger-maeparser-dev libschroedinger-maeparser1 libsigsegv2 libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libsqlite3-dev libssh-4 libsynctex2 libteckit0 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtinfo-dev libtool libuchardet0 libuv1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libwoff1 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxt6 libxxhash0 libyaml-0-2 libzzip-0-13 llvm-7 llvm-7-dev llvm-7-runtime lsb-release m4 man-db mime-support netbase pandoc pandoc-data po-debconf poppler-data postgresql-client-common postgresql-common postgresql-server-dev-11 postgresql-server-dev-all preview-latex-style python python-babel-localedata python-dateutil python-dev python-minimal python-numpy python-pandas python-pandas-lib python-pil python-pkg-resources python-six python-tz python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-alabaster python3-babel python3-certifi python3-chardet python3-commonmark-bkrs python3-dev python3-distutils python3-docutils python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-packaging python3-pkg-resources python3-pygments python3-pyparsing python3-recommonmark python3-requests python3-roman python3-six python3-sphinx python3-tz python3-urllib3 python3.7 python3.7-dev python3.7-minimal rapidjson-dev sgml-base shared-mime-info sphinx-common ssl-cert t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-generic-extra texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ubuntu-mono ucf x11-common xdg-utils xkb-data xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation clang-7-doc cmake-doc ninja-build debtags dh-make doxygen-latex doxygen-doc doxygen-gui graphviz flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils transfig ufraw-batch ghostscript lrzip libboost-doc libboost1.67-doc gccxml libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-random1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-test1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev colord cups-common libfftw3-bin libfftw3-dev krb5-doc krb5-user gvfs icu-doc liblcms2-utils libmagickcore-6.q16-6-extra ncurses-doc postgresql-doc-11 sqlite3-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools llvm-7-doc lsb m4-doc apparmor less www-browser texlive-xetex texlive-luatex pandoc-citeproc context wkhtmltopdf ghc nodejs php ruby r-base-core libjs-mathjax node-katex libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum libjson-perl python-doc python-tk gfortran python-pytest python-numpy-dbg python-numpy-doc python-pandas-doc python-pil-doc python-pil-dbg python-setuptools python2-doc python2.7-doc python3-doc python3-tk python3-venv python-commonmark-bkrs-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french python-jinja2-doc python3-setuptools python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks dvipng python3-sphinx-rtd-theme python3-stemmer sphinx-doc python3.7-venv python3.7-doc sgml-base-doc openssl-blacklist gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer texlive-fonts-recommended-doc texlive-latex-base-doc python-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex Recommended packages: libomp-7-dev libfl-dev curl | wget | lynx libmagickcore-6.q16-6-extra ghostscript netpbm xpdf-reader | pdf-viewer gv | postscript-viewer at-spi2-core libcupsfilters1 libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs fonts-droid-fallback libgtk-3-bin javascript-common krb5-locales gsfonts publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl logrotate python-scipy python-matplotlib python-tables python-numexpr python-xlrd python-statsmodels python-openpyxl python-xlwt python-bs4 python-html5lib python-lxml python-olefile python3-pil lmodern tex-gyre tipa ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev binfmt-support bison bsdmainutils clang-7 cmake cmake-data dbus dbus-user-session dconf-gsettings-backend dconf-service dctrl-tools debhelper dh-autoreconf dh-python dh-strip-nondeterminism distro-info-data docutils-common doxygen dwz file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base glib-networking glib-networking-common glib-networking-services groff-base gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian latexmk lib64atomic1 lib64gcc1 lib64stdc++6 libarchive-zip-perl libarchive13 libasn1-8-heimdal libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas3 libboost-atomic1.67-dev libboost-atomic1.67.0 libboost-chrono1.67-dev libboost-chrono1.67.0 libboost-date-time1.67-dev libboost-date-time1.67.0 libboost-dev libboost-python-dev libboost-python1.67-dev libboost-python1.67.0 libboost-regex-dev libboost-regex1.67-dev libboost-regex1.67.0 libboost-serialization1.67-dev libboost-serialization1.67.0 libboost-system-dev libboost-system1.67-dev libboost-system1.67.0 libboost-thread-dev libboost-thread1.67-dev libboost-thread1.67.0 libboost1.67-dev libbrotli1 libbsd0 libc6-amd64 libcairo-gobject2 libcairo2 libclang-common-7-dev libclang1-7 libcolord2 libcroco3 libcups2 libcupsimage2 libcurl4 libdatrie1 libdbus-1-3 libdconf1 libedit2 libelf1 libepoxy0 libexpat1 libexpat1-dev libffi-dev libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgc1c2 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgssapi3-heimdal libgtk-3-0 libgtk-3-common libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp1 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblqr-1-0 libltdl7 liblua5.1-0 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmpdec2 libncurses-dev libnghttp2-14 libobjc-8-dev libobjc4 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpotrace0 libpq-dev libpq5 libproxy1v5 libpsl5 libptexenc1 libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib librest-0.7-0 librhash0 libroken18-heimdal librsvg2-2 librsvg2-bin librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libschroedinger-coordgenlibs-dev libschroedinger-coordgenlibs1 libschroedinger-maeparser-dev libschroedinger-maeparser1 libsigsegv2 libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libsqlite3-dev libssh-4 libsynctex2 libteckit0 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtinfo-dev libtool libuchardet0 libuv1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libwoff1 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxt6 libxxhash0 libyaml-0-2 libzzip-0-13 llvm-7 llvm-7-dev llvm-7-runtime lsb-release m4 man-db mime-support netbase pandoc pandoc-data po-debconf poppler-data postgresql-client-common postgresql-common postgresql-server-dev-11 postgresql-server-dev-all preview-latex-style python python-babel-localedata python-dateutil python-dev python-minimal python-numpy python-pandas python-pandas-lib python-pil python-pkg-resources python-six python-tz python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-alabaster python3-babel python3-certifi python3-chardet python3-commonmark-bkrs python3-dev python3-distutils python3-docutils python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-packaging python3-pkg-resources python3-pygments python3-pyparsing python3-recommonmark python3-requests python3-roman python3-six python3-sphinx python3-tz python3-urllib3 python3.7 python3.7-dev python3.7-minimal rapidjson-dev sbuild-build-depends-rdkit-dummy sgml-base shared-mime-info sphinx-common ssl-cert t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-generic-extra texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ubuntu-mono ucf x11-common xdg-utils xkb-data xml-core 0 upgraded, 345 newly installed, 0 to remove and 0 not upgraded. Need to get 369 MB of archives. After this operation, 1498 MB of additional disk space will be used. 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http://ftpmaster.internal/ubuntu disco/main i386 python3 i386 3.7.2-1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main i386 libxau6 i386 1:1.0.8-1 [8352 B] Get:13 http://ftpmaster.internal/ubuntu disco/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main i386 libxdmcp6 i386 1:1.1.2-3 [11.1 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main i386 libxcb1 i386 1.13.1-2 [49.9 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main i386 libx11-data all 2:1.6.7-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main i386 libx11-6 i386 2:1.6.7-1 [594 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main i386 libxext6 i386 2:1.3.3-1 [31.6 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main i386 groff-base i386 1.22.4-2 [880 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main i386 libpipeline1 i386 1.5.1-1 [28.0 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main i386 man-db i386 2.8.5-1 [1112 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main i386 m4 i386 1.4.18-2 [202 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main i386 flex i386 2.6.4-6.2 [307 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main i386 libfftw3-double3 i386 3.3.8-2 [632 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main i386 libfreetype6 i386 2.9.1-3 [350 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main i386 ucf all 3.0038+nmu1 [51.6 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main i386 fonts-dejavu-core all 2.37-1 [1041 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main i386 fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main i386 libfontconfig1 i386 2.13.1-2ubuntu2 [124 kB] 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disco/main i386 python2-minimal i386 2.7.15-4 [28.0 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main i386 python-minimal i386 2.7.15-4 [5980 B] Get:55 http://ftpmaster.internal/ubuntu disco/main i386 libpython2.7-stdlib i386 2.7.15-5build1 [1931 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main i386 python2.7 i386 2.7.15-5build1 [239 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main i386 libpython2-stdlib i386 2.7.15-4 [7592 B] Get:58 http://ftpmaster.internal/ubuntu disco/main i386 libpython-stdlib i386 2.7.15-4 [5824 B] Get:59 http://ftpmaster.internal/ubuntu disco/main i386 python2 i386 2.7.15-4 [26.5 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main i386 python i386 2.7.15-4 [7832 B] Get:61 http://ftpmaster.internal/ubuntu disco/main i386 sgml-base all 1.29 [12.3 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main i386 tex-common all 6.10 [32.6 kB] Get:63 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libdbus-1-3 i386 1.12.12-1ubuntu1 [190 kB] Get:64 http://ftpmaster.internal/ubuntu disco-proposed/main i386 dbus i386 1.12.12-1ubuntu1 [162 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main i386 distro-info-data all 0.39 [4544 B] Get:66 http://ftpmaster.internal/ubuntu disco/main i386 libmagic-mgc i386 1:5.35-2 [200 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main i386 libmagic1 i386 1:5.35-2 [80.0 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main i386 file i386 1:5.35-2 [22.8 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main i386 libelf1 i386 0.175-2 [49.9 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main i386 libfribidi0 i386 1.0.5-3.1 [26.7 kB] Get:71 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libpam-systemd i386 240-5ubuntu2 [125 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main i386 libyaml-0-2 i386 0.2.1-1 [49.1 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main i386 lsb-release all 9.20170808ubuntu1 [11.0 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main i386 netbase all 5.5 [12.9 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main i386 shared-mime-info i386 1.10-1 [430 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main i386 xkb-data all 2.23.1-1ubuntu1.18.10.1 [325 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main i386 gettext-base i386 0.19.8.1-9 [51.2 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main i386 libedit2 i386 3.1-20181209-1 [89.8 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main i386 libkrb5support0 i386 1.17-1 [36.2 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main i386 libk5crypto3 i386 1.17-1 [90.0 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main i386 libkeyutils1 i386 1.5.9-9.3 [9896 B] Get:82 http://ftpmaster.internal/ubuntu disco/main i386 libkrb5-3 i386 1.17-1 [357 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main i386 libgssapi-krb5-2 i386 1.17-1 [132 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main i386 libpsl5 i386 0.20.2-2 [50.7 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main i386 hicolor-icon-theme all 0.17-2 [9976 B] Get:86 http://ftpmaster.internal/ubuntu disco/main i386 libgdk-pixbuf2.0-common all 2.38.0+dfsg-7 [6080 B] Get:87 http://ftpmaster.internal/ubuntu disco/main i386 libgdk-pixbuf2.0-0 i386 2.38.0+dfsg-7 [180 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main i386 gtk-update-icon-cache i386 3.24.4-1ubuntu1 [27.6 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main i386 libpixman-1-0 i386 0.36.0-1 [233 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main i386 libxcb-render0 i386 1.13.1-2 [15.9 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main i386 libxcb-shm0 i386 1.13.1-2 [5744 B] Get:92 http://ftpmaster.internal/ubuntu disco/main i386 libxrender1 i386 1:0.9.10-1 [19.9 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main i386 libcairo2 i386 1.16.0-2 [640 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main i386 libcroco3 i386 0.6.12-3 [87.9 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main i386 fontconfig i386 2.13.1-2ubuntu2 [171 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main i386 libthai-data all 0.1.28-1 [134 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main i386 libdatrie1 i386 0.2.12-1 [19.8 kB] Get:98 http://ftpmaster.internal/ubuntu disco/main i386 libthai0 i386 0.1.28-1 [19.1 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main i386 libpango-1.0-0 i386 1.42.4-6 [160 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main i386 libgraphite2-3 i386 1.3.13-7 [76.5 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main i386 libharfbuzz0b i386 2.3.0-1 [384 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main i386 libpangoft2-1.0-0 i386 1.42.4-6 [38.3 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main i386 libpangocairo-1.0-0 i386 1.42.4-6 [24.8 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main i386 librsvg2-2 i386 2.44.10-1 [1258 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main i386 librsvg2-common i386 2.44.10-1 [9188 B] Get:106 http://ftpmaster.internal/ubuntu disco/main i386 humanity-icon-theme all 0.6.15 [1250 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main i386 ubuntu-mono all 16.10+18.10.20181005-0ubuntu1 [149 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main i386 adwaita-icon-theme all 3.30.0-0ubuntu1 [3253 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main i386 autoconf all 2.69-11 [322 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main i386 automake all 1:1.16.1-4ubuntu3 [522 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main i386 autopoint all 0.19.8.1-9 [412 kB] Get:113 http://ftpmaster.internal/ubuntu disco/universe i386 binfmt-support i386 2.2.0-1 [59.9 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main i386 libbison-dev i386 2:3.2.4.dfsg-1 [343 kB] Get:115 http://ftpmaster.internal/ubuntu disco/main i386 bison i386 2:3.2.4.dfsg-1 [274 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main i386 libllvm7 i386 1:7.0.1-4 [13.0 MB] Get:117 http://ftpmaster.internal/ubuntu disco/main i386 libgc1c2 i386 1:7.6.4-0.4 [86.3 kB] Get:118 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libobjc4 i386 8.2.0-16ubuntu1 [55.8 kB] Get:119 http://ftpmaster.internal/ubuntu disco-proposed/universe i386 libobjc-8-dev i386 8.2.0-16ubuntu1 [216 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main i386 libc6-amd64 i386 2.28-0ubuntu1 [2836 kB] Get:121 http://ftpmaster.internal/ubuntu disco-proposed/main i386 lib64atomic1 i386 8.2.0-16ubuntu1 [9052 B] Get:122 http://ftpmaster.internal/ubuntu disco-proposed/main i386 lib64gcc1 i386 1:8.2.0-16ubuntu1 [40.6 kB] Get:123 http://ftpmaster.internal/ubuntu disco-proposed/main i386 lib64stdc++6 i386 8.2.0-16ubuntu1 [383 kB] Get:124 http://ftpmaster.internal/ubuntu disco/universe i386 libclang-common-7-dev i386 1:7.0.1-4 [3131 kB] Get:125 http://ftpmaster.internal/ubuntu disco/universe i386 libclang1-7 i386 1:7.0.1-4 [5885 kB] Get:126 http://ftpmaster.internal/ubuntu disco/universe i386 clang-7 i386 1:7.0.1-4 [7928 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main i386 cmake-data all 3.13.2-1 [1457 kB] Get:128 http://ftpmaster.internal/ubuntu disco/main i386 libarchive13 i386 3.3.3-3 [343 kB] Get:129 http://ftpmaster.internal/ubuntu disco/main i386 libroken18-heimdal i386 7.5.0+dfsg-2.1 [44.7 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main i386 libasn1-8-heimdal i386 7.5.0+dfsg-2.1 [186 kB] Get:131 http://ftpmaster.internal/ubuntu disco/main i386 libheimbase1-heimdal i386 7.5.0+dfsg-2.1 [32.2 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main i386 libhcrypto4-heimdal i386 7.5.0+dfsg-2.1 [93.4 kB] Get:133 http://ftpmaster.internal/ubuntu disco/main i386 libwind0-heimdal i386 7.5.0+dfsg-2.1 [48.4 kB] Get:134 http://ftpmaster.internal/ubuntu disco/main i386 libhx509-5-heimdal i386 7.5.0+dfsg-2.1 [117 kB] Get:135 http://ftpmaster.internal/ubuntu disco/main i386 libkrb5-26-heimdal i386 7.5.0+dfsg-2.1 [230 kB] Get:136 http://ftpmaster.internal/ubuntu disco/main i386 libheimntlm0-heimdal i386 7.5.0+dfsg-2.1 [16.3 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main i386 libgssapi3-heimdal i386 7.5.0+dfsg-2.1 [106 kB] Get:138 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libsasl2-modules-db i386 2.1.27+dfsg-1build1 [15.8 kB] Get:139 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libsasl2-2 i386 2.1.27+dfsg-1build1 [52.8 kB] Get:140 http://ftpmaster.internal/ubuntu disco/main i386 libldap-common all 2.4.47+dfsg-2ubuntu1 [16.2 kB] Get:141 http://ftpmaster.internal/ubuntu disco/main i386 libldap-2.4-2 i386 2.4.47+dfsg-2ubuntu1 [166 kB] Get:142 http://ftpmaster.internal/ubuntu disco/main i386 libnghttp2-14 i386 1.36.0-1 [84.1 kB] Get:143 http://ftpmaster.internal/ubuntu disco/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [58.3 kB] Get:144 http://ftpmaster.internal/ubuntu disco/main i386 libssh-4 i386 0.8.6-2 [203 kB] Get:145 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libcurl4 i386 7.63.0-1ubuntu1 [258 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main i386 libjsoncpp1 i386 1.7.4-3 [82.7 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main i386 librhash0 i386 1.3.7-1 [107 kB] Get:148 http://ftpmaster.internal/ubuntu disco/main i386 libuv1 i386 1.24.1-1 [75.7 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main i386 cmake i386 3.13.2-1 [3726 kB] Get:150 http://ftpmaster.internal/ubuntu disco-proposed/main i386 dbus-user-session i386 1.12.12-1ubuntu1 [9420 B] Get:151 http://ftpmaster.internal/ubuntu disco/main i386 libdconf1 i386 0.30.1-2 [37.6 kB] Get:152 http://ftpmaster.internal/ubuntu disco/main i386 dconf-service i386 0.30.1-2 [31.9 kB] Get:153 http://ftpmaster.internal/ubuntu disco/main i386 dconf-gsettings-backend i386 0.30.1-2 [23.5 kB] Get:154 http://ftpmaster.internal/ubuntu disco/main i386 dctrl-tools i386 2.24-3 [63.0 kB] Get:155 http://ftpmaster.internal/ubuntu disco/main i386 libtool all 2.4.6-9 [194 kB] Get:156 http://ftpmaster.internal/ubuntu disco/main i386 dh-autoreconf all 19 [16.1 kB] Get:157 http://ftpmaster.internal/ubuntu disco/main i386 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:158 http://ftpmaster.internal/ubuntu disco/main i386 libfile-stripnondeterminism-perl all 1.1.0-1 [13.6 kB] Get:159 http://ftpmaster.internal/ubuntu disco/main i386 dh-strip-nondeterminism all 1.1.0-1 [5100 B] Get:160 http://ftpmaster.internal/ubuntu disco/main i386 dwz i386 0.12-3 [81.5 kB] Get:161 http://ftpmaster.internal/ubuntu disco/main i386 gettext i386 0.19.8.1-9 [905 kB] Get:162 http://ftpmaster.internal/ubuntu disco/main i386 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:163 http://ftpmaster.internal/ubuntu disco/main i386 po-debconf all 1.0.21 [233 kB] Get:164 http://ftpmaster.internal/ubuntu disco/main i386 debhelper all 12ubuntu1 [887 kB] Get:165 http://ftpmaster.internal/ubuntu disco/main i386 python3-lib2to3 all 3.7.2-3 [74.3 kB] Get:166 http://ftpmaster.internal/ubuntu disco/main i386 python3-distutils all 3.7.2-3 [139 kB] Get:167 http://ftpmaster.internal/ubuntu disco/main i386 dh-python all 3.20180927ubuntu2 [90.9 kB] Get:168 http://ftpmaster.internal/ubuntu disco/main i386 xml-core all 0.18 [21.3 kB] Get:169 http://ftpmaster.internal/ubuntu disco/main i386 docutils-common all 0.14+dfsg-3 [156 kB] Get:170 http://ftpmaster.internal/ubuntu disco/universe i386 libxapian30 i386 1.4.9-1 [961 kB] Get:171 http://ftpmaster.internal/ubuntu disco/universe i386 doxygen i386 1.8.13-10ubuntu1 [3974 kB] Get:172 http://ftpmaster.internal/ubuntu disco/main i386 fonts-lmodern all 2.004.5-5 [4532 kB] Get:173 http://ftpmaster.internal/ubuntu disco/main i386 libproxy1v5 i386 0.4.15-5 [55.5 kB] Get:174 http://ftpmaster.internal/ubuntu disco/main i386 glib-networking-common all 2.58.0-2 [3580 B] Get:175 http://ftpmaster.internal/ubuntu disco/main i386 glib-networking-services i386 2.58.0-2 [9272 B] Get:176 http://ftpmaster.internal/ubuntu disco/main i386 gsettings-desktop-schemas all 3.31.0.2-2ubuntu3 [28.3 kB] Get:177 http://ftpmaster.internal/ubuntu disco/main i386 glib-networking i386 2.58.0-2 [53.1 kB] Get:178 http://ftpmaster.internal/ubuntu disco/main i386 icu-devtools i386 63.1-6 [187 kB] Get:179 http://ftpmaster.internal/ubuntu disco/universe i386 imagemagick-6.q16 i386 8:6.9.10.14+dfsg-7ubuntu2 [427 kB] Get:180 http://ftpmaster.internal/ubuntu disco/universe i386 imagemagick i386 8:6.9.10.14+dfsg-7ubuntu2 [14.4 kB] Get:181 http://ftpmaster.internal/ubuntu disco/main i386 libpaper1 i386 1.1.26 [13.0 kB] Get:182 http://ftpmaster.internal/ubuntu disco/main i386 libpaper-utils i386 1.1.26 [8516 B] Get:183 http://ftpmaster.internal/ubuntu disco/main i386 libkpathsea6 i386 2018.20181218.49446-1 [59.9 kB] Get:184 http://ftpmaster.internal/ubuntu disco/main i386 libptexenc1 i386 2018.20181218.49446-1 [35.8 kB] Get:185 http://ftpmaster.internal/ubuntu disco/main i386 libsynctex2 i386 2018.20181218.49446-1 [57.1 kB] Get:186 http://ftpmaster.internal/ubuntu disco/main i386 libtexlua52 i386 2018.20181218.49446-1 [99.0 kB] Get:187 http://ftpmaster.internal/ubuntu disco/main i386 libtexlua53 i386 2018.20181218.49446-1 [118 kB] Get:188 http://ftpmaster.internal/ubuntu disco/main i386 libtexluajit2 i386 2018.20181218.49446-1 [247 kB] Get:189 http://ftpmaster.internal/ubuntu disco/main i386 t1utils i386 1.41-3 [56.0 kB] Get:190 http://ftpmaster.internal/ubuntu disco/main i386 libbrotli1 i386 1.0.7-2 [265 kB] Get:191 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libavahi-common-data i386 0.7-4ubuntu5 [21.4 kB] Get:192 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libavahi-common3 i386 0.7-4ubuntu5 [23.1 kB] Get:193 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libavahi-client3 i386 0.7-4ubuntu5 [27.6 kB] Get:194 http://ftpmaster.internal/ubuntu disco/main i386 libcups2 i386 2.2.10-3 [225 kB] Get:195 http://ftpmaster.internal/ubuntu disco/main i386 libcupsimage2 i386 2.2.10-3 [19.3 kB] Get:196 http://ftpmaster.internal/ubuntu disco/main i386 libijs-0.35 i386 0.35-13 [16.0 kB] Get:197 http://ftpmaster.internal/ubuntu disco/main i386 libjbig2dec0 i386 0.15-2 [61.1 kB] Get:198 http://ftpmaster.internal/ubuntu disco/main i386 libgs9-common all 9.26~dfsg+0-0ubuntu4 [5094 kB] Get:199 http://ftpmaster.internal/ubuntu disco/main i386 libgs9 i386 9.26~dfsg+0-0ubuntu4 [2503 kB] Get:200 http://ftpmaster.internal/ubuntu disco/main i386 libharfbuzz-icu0 i386 2.3.0-1 [5692 B] Get:201 http://ftpmaster.internal/ubuntu disco/main i386 libpotrace0 i386 1.15-1 [16.9 kB] Get:202 http://ftpmaster.internal/ubuntu disco/main i386 libteckit0 i386 2.5.8+ds2-5ubuntu1 [267 kB] Get:203 http://ftpmaster.internal/ubuntu disco/main i386 libwoff1 i386 1.0.2-1build1 [45.5 kB] Get:204 http://ftpmaster.internal/ubuntu disco/main i386 libxt6 i386 1:1.1.5-1 [164 kB] Get:205 http://ftpmaster.internal/ubuntu disco/main i386 libxmu6 i386 2:1.1.2-2 [48.4 kB] Get:206 http://ftpmaster.internal/ubuntu disco/main i386 libxpm4 i386 1:3.5.12-1 [35.8 kB] Get:207 http://ftpmaster.internal/ubuntu disco/main i386 libxaw7 i386 2:1.0.13-1 [182 kB] Get:208 http://ftpmaster.internal/ubuntu disco/main i386 libxi6 i386 2:1.7.9-1 [31.7 kB] Get:209 http://ftpmaster.internal/ubuntu disco/main i386 libxxhash0 i386 0.6.5-2 [8792 B] Get:210 http://ftpmaster.internal/ubuntu disco/main i386 libzzip-0-13 i386 0.13.62-3.1ubuntu1 [27.8 kB] Get:211 http://ftpmaster.internal/ubuntu disco/main i386 texlive-binaries i386 2018.20181218.49446-1 [11.4 MB] Get:212 http://ftpmaster.internal/ubuntu disco/main i386 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:213 http://ftpmaster.internal/ubuntu disco/main i386 texlive-base all 2018.20190131-1 [19.7 MB] Get:214 http://ftpmaster.internal/ubuntu disco/main i386 texlive-latex-base all 2018.20190131-1 [956 kB] Get:215 http://ftpmaster.internal/ubuntu disco/universe i386 latexmk all 1:4.61-0.1 [378 kB] Get:216 http://ftpmaster.internal/ubuntu disco/main i386 libatk1.0-data all 2.30.0-2 [3032 B] Get:217 http://ftpmaster.internal/ubuntu disco/main i386 libatk1.0-0 i386 2.30.0-2 [44.3 kB] Get:218 http://ftpmaster.internal/ubuntu disco/main i386 libatspi2.0-0 i386 2.30.0-5 [63.0 kB] Get:219 http://ftpmaster.internal/ubuntu disco/main i386 libatk-bridge2.0-0 i386 2.30.0-2 [61.5 kB] Get:220 http://ftpmaster.internal/ubuntu disco/main i386 libblas3 i386 3.8.0-2 [132 kB] Get:221 http://ftpmaster.internal/ubuntu disco/main i386 libboost1.67-dev i386 1.67.0-12 [8362 kB] Get:222 http://ftpmaster.internal/ubuntu disco/main i386 libboost-atomic1.67.0 i386 1.67.0-12 [201 kB] Get:223 http://ftpmaster.internal/ubuntu disco/main i386 libboost-atomic1.67-dev i386 1.67.0-12 [199 kB] Get:224 http://ftpmaster.internal/ubuntu disco/main i386 libboost-system1.67.0 i386 1.67.0-12 [205 kB] Get:225 http://ftpmaster.internal/ubuntu disco/main i386 libboost-chrono1.67.0 i386 1.67.0-12 [209 kB] Get:226 http://ftpmaster.internal/ubuntu disco/main i386 libboost-chrono1.67-dev i386 1.67.0-12 [211 kB] Get:227 http://ftpmaster.internal/ubuntu disco/main i386 libboost-date-time1.67.0 i386 1.67.0-12 [214 kB] Get:228 http://ftpmaster.internal/ubuntu disco/main i386 libboost-serialization1.67.0 i386 1.67.0-12 [300 kB] Get:229 http://ftpmaster.internal/ubuntu disco/main i386 libboost-serialization1.67-dev i386 1.67.0-12 [341 kB] Get:230 http://ftpmaster.internal/ubuntu disco/main i386 libboost-date-time1.67-dev i386 1.67.0-12 [222 kB] Get:231 http://ftpmaster.internal/ubuntu disco/main i386 libboost-dev i386 1.67.0.1 [3232 B] Get:232 http://ftpmaster.internal/ubuntu disco/universe i386 libboost-python1.67.0 i386 1.67.0-12 [310 kB] Get:233 http://ftpmaster.internal/ubuntu disco/main i386 libpython2.7 i386 2.7.15-5build1 [1056 kB] Get:234 http://ftpmaster.internal/ubuntu disco/main i386 libexpat1-dev i386 2.2.6-1 [137 kB] Get:235 http://ftpmaster.internal/ubuntu disco/main i386 libpython2.7-dev i386 2.7.15-5build1 [31.3 MB] Get:236 http://ftpmaster.internal/ubuntu disco/main i386 libpython2-dev i386 2.7.15-4 [7656 B] Get:237 http://ftpmaster.internal/ubuntu disco/main i386 libpython-dev i386 2.7.15-4 [5892 B] Get:238 http://ftpmaster.internal/ubuntu disco/main i386 python2.7-dev i386 2.7.15-5build1 [279 kB] Get:239 http://ftpmaster.internal/ubuntu disco/main i386 python2-dev i386 2.7.15-4 [1252 B] Get:240 http://ftpmaster.internal/ubuntu disco/main i386 python-dev i386 2.7.15-4 [1224 B] Get:241 http://ftpmaster.internal/ubuntu disco/main i386 libpython3.7 i386 3.7.2-1build1 [1504 kB] Get:242 http://ftpmaster.internal/ubuntu disco/main i386 libpython3.7-dev i386 3.7.2-1build1 [47.7 MB] Get:243 http://ftpmaster.internal/ubuntu disco/main i386 libpython3-dev i386 3.7.2-1 [7144 B] Get:244 http://ftpmaster.internal/ubuntu disco/main i386 python3.7-dev i386 3.7.2-1build1 [511 kB] Get:245 http://ftpmaster.internal/ubuntu disco/main i386 python3-dev i386 3.7.2-1 [1300 B] Get:246 http://ftpmaster.internal/ubuntu disco/universe i386 libboost-python1.67-dev i386 1.67.0-12 [320 kB] Get:247 http://ftpmaster.internal/ubuntu disco/universe i386 libboost-python-dev i386 1.67.0.1 [3324 B] Get:248 http://ftpmaster.internal/ubuntu disco/universe i386 libboost-regex1.67.0 i386 1.67.0-12 [479 kB] Get:249 http://ftpmaster.internal/ubuntu disco/main i386 libicu-dev i386 63.1-6 [9368 kB] Get:250 http://ftpmaster.internal/ubuntu disco/universe i386 libboost-regex1.67-dev i386 1.67.0-12 [534 kB] Get:251 http://ftpmaster.internal/ubuntu disco/universe i386 libboost-regex-dev i386 1.67.0.1 [3288 B] Get:252 http://ftpmaster.internal/ubuntu disco/main i386 libboost-system1.67-dev i386 1.67.0-12 [206 kB] Get:253 http://ftpmaster.internal/ubuntu disco/main i386 libboost-system-dev i386 1.67.0.1 [3176 B] Get:254 http://ftpmaster.internal/ubuntu disco/main i386 libboost-thread1.67.0 i386 1.67.0-12 [243 kB] Get:255 http://ftpmaster.internal/ubuntu disco/main i386 libboost-thread1.67-dev i386 1.67.0-12 [246 kB] Get:256 http://ftpmaster.internal/ubuntu disco/main i386 libboost-thread-dev i386 1.67.0.1 [3056 B] Get:257 http://ftpmaster.internal/ubuntu disco/main i386 libcairo-gobject2 i386 1.16.0-2 [16.6 kB] Get:258 http://ftpmaster.internal/ubuntu disco/main i386 libcolord2 i386 1.4.3-4 [139 kB] Get:259 http://ftpmaster.internal/ubuntu disco/main i386 libepoxy0 i386 1.5.3-0.1 [199 kB] Get:260 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libgfortran5 i386 8.2.0-16ubuntu1 [557 kB] Get:261 http://ftpmaster.internal/ubuntu disco/main i386 libjson-glib-1.0-common all 1.4.4-2 [3496 B] Get:262 http://ftpmaster.internal/ubuntu disco/main i386 libjson-glib-1.0-0 i386 1.4.4-2 [62.7 kB] Get:263 http://ftpmaster.internal/ubuntu disco/main i386 libsoup2.4-1 i386 2.64.2-2 [255 kB] Get:264 http://ftpmaster.internal/ubuntu disco/main i386 libsoup-gnome2.4-1 i386 2.64.2-2 [5248 B] Get:265 http://ftpmaster.internal/ubuntu disco/main i386 librest-0.7-0 i386 0.8.1-1 [33.7 kB] Get:266 http://ftpmaster.internal/ubuntu disco/main i386 libwayland-client0 i386 1.16.0-1ubuntu2 [24.1 kB] Get:267 http://ftpmaster.internal/ubuntu disco/main i386 libwayland-cursor0 i386 1.16.0-1ubuntu2 [10.7 kB] Get:268 http://ftpmaster.internal/ubuntu disco/main i386 libwayland-egl1 i386 1.16.0-1ubuntu2 [5692 B] Get:269 http://ftpmaster.internal/ubuntu disco/main i386 libxcomposite1 i386 1:0.4.4-2 [7184 B] Get:270 http://ftpmaster.internal/ubuntu disco/main i386 libxfixes3 i386 1:5.0.3-1 [11.2 kB] Get:271 http://ftpmaster.internal/ubuntu disco/main i386 libxcursor1 i386 1:1.1.15-2 [21.4 kB] Get:272 http://ftpmaster.internal/ubuntu disco/main i386 libxdamage1 i386 1:1.1.4-3 [7090 B] Get:273 http://ftpmaster.internal/ubuntu disco/main i386 libxinerama1 i386 2:1.1.4-1 [7352 B] Get:274 http://ftpmaster.internal/ubuntu disco/main i386 libxkbcommon0 i386 0.8.2-1 [103 kB] Get:275 http://ftpmaster.internal/ubuntu disco/main i386 libxrandr2 i386 2:1.5.1-1 [19.9 kB] Get:276 http://ftpmaster.internal/ubuntu disco/main i386 libgtk-3-common all 3.24.4-1ubuntu1 [230 kB] Get:277 http://ftpmaster.internal/ubuntu disco/main i386 libgtk-3-0 i386 3.24.4-1ubuntu1 [2716 kB] Get:278 http://ftpmaster.internal/ubuntu disco/universe i386 libimagequant0 i386 2.12.2-1 [32.5 kB] Get:279 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libjs-jquery all 3.3.1~dfsg-1 [329 kB] Get:280 http://ftpmaster.internal/ubuntu disco/main i386 libjs-underscore all 1.8.3~dfsg-2 [90.6 kB] Get:281 http://ftpmaster.internal/ubuntu disco/main i386 libjs-sphinxdoc all 1.8.3-2 [95.4 kB] Get:282 http://ftpmaster.internal/ubuntu disco/main i386 liblapack3 i386 3.8.0-2 [1960 kB] Get:283 http://ftpmaster.internal/ubuntu disco/universe i386 liblua5.1-0 i386 5.1.5-8.1build3 [111 kB] Get:284 http://ftpmaster.internal/ubuntu disco/main i386 libncurses-dev i386 6.1+20180210-4ubuntu1 [360 kB] Get:285 http://ftpmaster.internal/ubuntu disco/main i386 libpq5 i386 11.1-2 [113 kB] Get:286 http://ftpmaster.internal/ubuntu disco/main i386 libpq-dev i386 11.1-2 [167 kB] Get:287 http://ftpmaster.internal/ubuntu disco/universe i386 librsvg2-bin i386 2.44.10-1 [21.3 kB] Get:288 http://ftpmaster.internal/ubuntu disco/universe i386 libschroedinger-maeparser1 i386 1.0.1-4 [47.8 kB] Get:289 http://ftpmaster.internal/ubuntu disco/universe i386 libschroedinger-coordgenlibs1 i386 1.1-3 [190 kB] Get:290 http://ftpmaster.internal/ubuntu disco/universe i386 libschroedinger-coordgenlibs-dev i386 1.1-3 [27.3 kB] Get:291 http://ftpmaster.internal/ubuntu disco/universe i386 libschroedinger-maeparser-dev i386 1.0.1-4 [10.2 kB] Get:292 http://ftpmaster.internal/ubuntu disco/main i386 libsqlite3-dev i386 3.26.0+fossilbc891ac6b-2 [710 kB] Get:293 http://ftpmaster.internal/ubuntu disco/main i386 libtinfo-dev i386 6.1+20180210-4ubuntu1 [964 B] Get:294 http://ftpmaster.internal/ubuntu disco/main i386 libwebpdemux2 i386 0.6.1-2 [9824 B] Get:295 http://ftpmaster.internal/ubuntu disco/main i386 libwebpmux3 i386 0.6.1-2 [21.0 kB] Get:296 http://ftpmaster.internal/ubuntu disco/universe i386 llvm-7-runtime i386 1:7.0.1-4 [151 kB] Get:297 http://ftpmaster.internal/ubuntu disco/universe i386 llvm-7 i386 1:7.0.1-4 [4338 kB] Get:298 http://ftpmaster.internal/ubuntu disco/main i386 libffi-dev i386 3.2.1-9 [156 kB] Get:299 http://ftpmaster.internal/ubuntu disco/universe i386 llvm-7-dev i386 1:7.0.1-4 [20.8 MB] Get:300 http://ftpmaster.internal/ubuntu disco/universe i386 pandoc-data all 2.2.1-3build1 [75.3 kB] Get:301 http://ftpmaster.internal/ubuntu disco/universe i386 pandoc i386 2.2.1-3build1 [14.7 MB] Get:302 http://ftpmaster.internal/ubuntu disco/main i386 postgresql-client-common all 199 [28.2 kB] Get:303 http://ftpmaster.internal/ubuntu disco/main i386 ssl-cert all 1.0.39 [17.0 kB] Get:304 http://ftpmaster.internal/ubuntu disco/main i386 postgresql-common all 199 [158 kB] Get:305 http://ftpmaster.internal/ubuntu disco/universe i386 postgresql-server-dev-11 i386 11.1-2 [910 kB] Get:306 http://ftpmaster.internal/ubuntu disco/universe i386 postgresql-server-dev-all all 199 [15.0 kB] Get:307 http://ftpmaster.internal/ubuntu disco/main i386 preview-latex-style all 11.91-1ubuntu1 [185 kB] Get:308 http://ftpmaster.internal/ubuntu disco/main i386 python-babel-localedata all 2.6.0+dfsg.1-1 [4071 kB] Get:309 http://ftpmaster.internal/ubuntu disco/main i386 python-six all 1.12.0-1 [11.6 kB] Get:310 http://ftpmaster.internal/ubuntu disco/main i386 python-dateutil all 2.7.3-1 [75.8 kB] Get:311 http://ftpmaster.internal/ubuntu disco/main i386 python-pkg-resources all 40.6.3-1 [129 kB] Get:312 http://ftpmaster.internal/ubuntu disco-proposed/main i386 python-numpy i386 1:1.16.0-1ubuntu1 [2073 kB] Get:313 http://ftpmaster.internal/ubuntu disco/main i386 python-tz all 2018.9-1 [31.1 kB] Get:314 http://ftpmaster.internal/ubuntu disco/universe i386 python-pandas-lib i386 0.23.3-1fakesync1ubuntu2 [2878 kB] Get:315 http://ftpmaster.internal/ubuntu disco/universe i386 python-pandas all 0.23.3-1fakesync1ubuntu2 [1730 kB] Get:316 http://ftpmaster.internal/ubuntu disco-proposed/main i386 python-pil i386 5.4.1-1 [341 kB] Get:317 http://ftpmaster.internal/ubuntu disco/main i386 python3-pkg-resources all 40.6.3-1 [99.7 kB] Get:318 http://ftpmaster.internal/ubuntu disco/main i386 python3-tz all 2018.9-1 [24.6 kB] Get:319 http://ftpmaster.internal/ubuntu disco/main i386 python3-babel all 2.6.0+dfsg.1-1 [83.4 kB] Get:320 http://ftpmaster.internal/ubuntu disco/main i386 python3-certifi all 2018.8.24-1 [140 kB] Get:321 http://ftpmaster.internal/ubuntu disco/main i386 python3-chardet all 3.0.4-3 [80.4 kB] Get:322 http://ftpmaster.internal/ubuntu disco/universe i386 python3-commonmark-bkrs all 0.5.4+ds-2 [28.3 kB] Get:323 http://ftpmaster.internal/ubuntu disco/main i386 python3-roman all 2.0.0-3 [8624 B] Get:324 http://ftpmaster.internal/ubuntu disco/main i386 python3-docutils all 0.14+dfsg-3 [363 kB] Get:325 http://ftpmaster.internal/ubuntu disco/main i386 python3-idna all 2.6-1 [32.5 kB] Get:326 http://ftpmaster.internal/ubuntu disco/main i386 python3-imagesize all 1.0.0-1 [5004 B] Get:327 http://ftpmaster.internal/ubuntu disco/main i386 python3-markupsafe i386 1.1.0-1 [14.0 kB] Get:328 http://ftpmaster.internal/ubuntu disco/main i386 python3-jinja2 all 2.10-1 [95.2 kB] Get:329 http://ftpmaster.internal/ubuntu disco/main i386 python3-pyparsing all 2.2.0+dfsg1-2 [52.2 kB] Get:330 http://ftpmaster.internal/ubuntu disco/main i386 python3-six all 1.12.0-1 [11.7 kB] Get:331 http://ftpmaster.internal/ubuntu disco/main i386 python3-packaging all 19.0-1 [18.4 kB] Get:332 http://ftpmaster.internal/ubuntu disco/main i386 python3-pygments all 2.3.1+dfsg-1 [580 kB] Get:333 http://ftpmaster.internal/ubuntu disco/universe i386 python3-recommonmark all 0.4.0+ds-5 [14.9 kB] Get:334 http://ftpmaster.internal/ubuntu disco/main i386 python3-urllib3 all 1.24-1 [83.4 kB] Get:335 http://ftpmaster.internal/ubuntu disco/main i386 python3-requests all 2.20.0-2 [46.7 kB] Get:336 http://ftpmaster.internal/ubuntu disco/main i386 sphinx-common all 1.8.3-2 [499 kB] Get:337 http://ftpmaster.internal/ubuntu disco/main i386 python3-alabaster all 0.7.8-1 [18.5 kB] Get:338 http://ftpmaster.internal/ubuntu disco/main i386 python3-sphinx all 1.8.3-2 [480 kB] Get:339 http://ftpmaster.internal/ubuntu disco/universe i386 rapidjson-dev all 1.1.0+dfsg2-5 [95.0 kB] Get:340 http://ftpmaster.internal/ubuntu disco/universe i386 texlive-fonts-recommended all 2018.20190131-1 [5198 kB] Get:341 http://ftpmaster.internal/ubuntu disco/universe i386 texlive-plain-generic all 2018.20190131-1 [24.2 MB] Get:342 http://ftpmaster.internal/ubuntu disco/universe i386 texlive-generic-extra all 2018.20190131-1 [15.8 kB] Get:343 http://ftpmaster.internal/ubuntu disco/main i386 texlive-latex-recommended all 2018.20190131-1 [15.1 MB] Get:344 http://ftpmaster.internal/ubuntu disco/universe i386 texlive-pictures all 2018.20190131-1 [4214 kB] Get:345 http://ftpmaster.internal/ubuntu disco/universe i386 texlive-latex-extra all 2018.20190131-1 [11.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 369 MB in 8s (48.9 MB/s) Selecting previously unselected package libpython3.7-minimal:i386. (Reading database ... 12692 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.2-1build1_i386.deb ... Unpacking libpython3.7-minimal:i386 (3.7.2-1build1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.2.6-1_i386.deb ... Unpacking libexpat1:i386 (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.2-1build1_i386.deb ... Unpacking python3.7-minimal (3.7.2-1build1) ... Setting up libpython3.7-minimal:i386 (3.7.2-1build1) ... Setting up libexpat1:i386 (2.2.6-1) ... Setting up python3.7-minimal (3.7.2-1build1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12941 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.2-1_i386.deb ... Unpacking python3-minimal (3.7.2-1) ... Selecting previously unselected package mime-support. 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Unpacking python3 (3.7.2-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../01-libxau6_1%3a1.0.8-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../02-libbsd0_0.9.1-1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../03-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../04-libxcb1_1.13.1-2_i386.deb ... Unpacking libxcb1:i386 (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../05-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../06-libx11-6_2%3a1.6.7-1_i386.deb ... Unpacking libx11-6:i386 (2:1.6.7-1) ... 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Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libzzip-0-13:i386 (0.13.62-3.1ubuntu1) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libschroedinger-maeparser-dev:i386 (1.0.1-4) ... Setting up libboost-system1.67.0:i386 (1.67.0-12) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libncurses-dev:i386 (6.1+20180210-4ubuntu1) ... Setting up libgfortran5:i386 (8.2.0-16ubuntu1) ... Setting up libwayland-cursor0:i386 (1.16.0-1ubuntu2) ... Setting up libtexluajit2:i386 (2018.20181218.49446-1) ... Setting up libboost-regex1.67.0:i386 (1.67.0-12) ... Setting up libwayland-egl1:i386 (1.16.0-1ubuntu2) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libpython2.7-stdlib:i386 (2.7.15-5build1) ... Setting up libxau6:i386 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libdbus-1-3:i386 (1.12.12-1ubuntu1) ... Setting up fonts-lmodern (2.004.5-5) ... Setting up libavahi-common-data:i386 (0.7-4ubuntu5) ... Setting up netbase (5.5) ... Setting up libwebp6:i386 (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (1.1.0-1) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libedit2:i386 (3.1-20181209-1) ... Setting up libpaper1:i386 (1.1.26) ... Creating config file /etc/papersize with new version Setting up binfmt-support (2.2.0-1) ... Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service → /lib/systemd/system/binfmt-support.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libk5crypto3:i386 (1.17-1) ... Setting up libpaper-utils (1.1.26) ... Setting up libobjc4:i386 (8.2.0-16ubuntu1) ... Setting up libpython3.7-stdlib:i386 (3.7.2-1build1) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libobjc-8-dev:i386 (8.2.0-16ubuntu1) ... Setting up tex-common (6.10) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libwind0-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up pandoc (2.2.1-3build1) ... Setting up gettext (0.19.8.1-9) ... Setting up libboost-serialization1.67-dev:i386 (1.67.0-12) ... Setting up flex (2.6.4-6.2) ... Setting up libarchive13:i386 (3.3.3-3) ... Setting up libllvm7:i386 (1:7.0.1-4) ... Setting up libasn1-8-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up libclang1-7:i386 (1:7.0.1-4) ... Setting up groff-base (1.22.4-2) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libboost-thread1.67.0:i386 (1.67.0-12) ... Setting up libhcrypto4-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up doxygen (1.8.13-10ubuntu1) ... Setting up libtinfo-dev:i386 (6.1+20180210-4ubuntu1) ... Setting up python2.7 (2.7.15-5build1) ... Setting up libharfbuzz0b:i386 (2.3.0-1) ... Setting up libtiff5:i386 (4.0.10-3) ... Setting up preview-latex-style (11.91-1ubuntu1) ... Setting up python3.7 (3.7.2-1build1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:i386 (0.1.28-1) ... Setting up libicu-dev:i386 (63.1-6) ... Setting up lib64atomic1 (8.2.0-16ubuntu1) ... Setting up file (1:5.35-2) ... Setting up libhx509-5-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up libschroedinger-coordgenlibs1:i386 (1.1-3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libboost-atomic1.67-dev:i386 (1.67.0-12) ... Setting up lib64gcc1 (1:8.2.0-16ubuntu1) ... Setting up llvm-7-runtime (1:7.0.1-4) ... Setting up postgresql-client-common (199) ... Setting up libpython3.7:i386 (3.7.2-1build1) ... Setting up libwebpmux3:i386 (0.6.1-2) ... Setting up postgresql-common (199) ... Adding user postgres to group ssl-cert Creating config file /etc/postgresql-common/createcluster.conf with new version Building PostgreSQL dictionaries from installed myspell/hunspell packages... Removing obsolete dictionary files: Created symlink /etc/systemd/system/multi-user.target.wants/postgresql.service → /lib/systemd/system/postgresql.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libboost-chrono1.67.0:i386 (1.67.0-12) ... Setting up libpython2.7:i386 (2.7.15-5build1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.7-dev:i386 (3.7.2-1build1) ... Setting up libboost-system1.67-dev:i386 (1.67.0-12) ... Setting up libice6:i386 (2:1.0.9-2) ... Setting up libwebpdemux2:i386 (0.6.1-2) ... Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython2-stdlib:i386 (2.7.15-4) ... Setting up libkrb5-3:i386 (1.17-1) ... Setting up libpython2.7-dev:i386 (2.7.15-5build1) ... Setting up libboost-chrono1.67-dev:i386 (1.67.0-12) ... Setting up libboost-date-time1.67-dev:i386 (1.67.0-12) ... Setting up libavahi-common3:i386 (0.7-4ubuntu5) ... Setting up libkrb5-26-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up dbus (1.12.12-1ubuntu1) ... Setting up python2.7-dev (2.7.15-5build1) ... Setting up lib64stdc++6 (8.2.0-16ubuntu1) ... Setting up libxcb1:i386 (1.13.1-2) ... Setting up libheimntlm0-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up libpython3-dev:i386 (3.7.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libpython3-stdlib:i386 (3.7.2-1) ... Setting up libfontconfig1:i386 (2.13.1-2ubuntu2) ... Setting up libsm6:i386 (2:1.2.2-1) ... Setting up libxcb-render0:i386 (1.13.1-2) ... Setting up libpam-systemd:i386 (240-5ubuntu2) ... Setting up libharfbuzz-icu0:i386 (2.3.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.2-1) ... Setting up libboost-thread1.67-dev:i386 (1.67.0-12) ... Setting up libboost-system-dev:i386 (1.67.0.1) ... Setting up python3-alabaster (0.7.8-1) ... Setting up python3-idna (2.6-1) ... Setting up python3-six (1.12.0-1) ... Setting up libboost-regex1.67-dev:i386 (1.67.0-12) ... Setting up libx11-6:i386 (2:1.6.7-1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up python3-commonmark-bkrs (0.5.4+ds-2) ... Setting up python3-pkg-resources (40.6.3-1) ... Setting up llvm-7 (1:7.0.1-4) ... Setting up python3.7-dev (3.7.2-1build1) ... Setting up lsb-release (9.20170808ubuntu1) ... Setting up libschroedinger-coordgenlibs-dev:i386 (1.1-3) ... Setting up python2 (2.7.15-4) ... Setting up dbus-user-session (1.12.12-1ubuntu1) ... Setting up python3-markupsafe (1.1.0-1) ... Setting up llvm-7-dev (1:7.0.1-4) ... Setting up libgssapi-krb5-2:i386 (1.17-1) ... Setting up libpython2-dev:i386 (2.7.15-4) ... Setting up libpython-stdlib:i386 (2.7.15-4) ... Setting up libclang-common-7-dev (1:7.0.1-4) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-jinja2 (2.10-1) ... Setting up python2-dev (2.7.15-4) ... Setting up libssh-4:i386 (0.8.6-2) ... Setting up libxcomposite1:i386 (1:0.4.4-2) ... Setting up libxcb-shm0:i386 (1.13.1-2) ... Setting up libxpm4:i386 (1:3.5.12-1) ... Setting up libxt6:i386 (1:1.1.5-1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libboost-regex-dev:i386 (1.67.0.1) ... Setting up libavahi-client3:i386 (0.7-4ubuntu5) ... Setting up python3-urllib3 (1.24-1) ... Setting up python3-packaging (19.0-1) ... Setting up libgssapi3-heimdal:i386 (7.5.0+dfsg-2.1) ... Setting up python3-lib2to3 (3.7.2-3) ... Setting up python3-tz (2018.9-1) ... Setting up python3-distutils (3.7.2-3) ... Setting up python (2.7.15-4) ... Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up libcups2:i386 (2.2.10-3) ... Setting up python3-pygments (2.3.1+dfsg-1) ... Setting up libpython-dev:i386 (2.7.15-4) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-imagesize (1.0.0-1) ... Setting up libxdamage1:i386 (1:1.1.4-3) ... Setting up libboost-thread-dev:i386 (1.67.0.1) ... Setting up libxext6:i386 (2:1.3.3-1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up dconf-service (0.30.1-2) ... Setting up python-dev (2.7.15-4) ... Setting up libatspi2.0-0:i386 (2.30.0-5) ... Setting up clang-7 (1:7.0.1-4) ... Setting up libgdk-pixbuf2.0-0:i386 (2.38.0+dfsg-7) ... Setting up python-tz (2018.9-1) ... Setting up python-pkg-resources (40.6.3-1) ... Setting up python-numpy (1:1.16.0-1ubuntu1) ... Setting up libxmu6:i386 (2:1.1.2-2) ... Setting up python3-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libcupsimage2:i386 (2.2.10-3) ... Setting up gtk-update-icon-cache (3.24.4-1ubuntu1) ... Setting up python-six (1.12.0-1) ... Setting up libxcursor1:i386 (1:1.1.15-2) ... Setting up libmagickcore-6.q16-6:i386 (8:6.9.10.14+dfsg-7ubuntu2) ... Setting up libldap-2.4-2:i386 (2.4.47+dfsg-2ubuntu1) ... Setting up python-pandas-lib (0.23.3-1fakesync1ubuntu2) ... Setting up libpango-1.0-0:i386 (1.42.4-6) ... Setting up libatk-bridge2.0-0:i386 (2.30.0-2) ... Setting up python3-requests (2.20.0-2) ... Setting up libgs9:i386 (9.26~dfsg+0-0ubuntu4) ... Setting up dh-python (3.20180927ubuntu2) ... Setting up dconf-gsettings-backend:i386 (0.30.1-2) ... Setting up python-pil:i386 (5.4.1-1) ... Setting up libxrandr2:i386 (2:1.5.1-1) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up libxaw7:i386 (2:1.0.13-1) ... Setting up libcairo2:i386 (1.16.0-2) ... Setting up libxinerama1:i386 (2:1.1.4-1) ... Setting up gsettings-desktop-schemas (3.31.0.2-2ubuntu3) ... Setting up libgtk-3-common (3.24.4-1ubuntu1) ... Setting up libcairo-gobject2:i386 (1.16.0-2) ... Setting up libcurl4:i386 (7.63.0-1ubuntu1) ... Setting up python3-dev (3.7.2-1) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libpangoft2-1.0-0:i386 (1.42.4-6) ... Setting up python-dateutil (2.7.3-1) ... Setting up libpq5:i386 (11.1-2) ... Setting up libmagickwand-6.q16-6:i386 (8:6.9.10.14+dfsg-7ubuntu2) ... Setting up glib-networking:i386 (2.58.0-2) ... Setting up texlive-base (2018.20190131-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper Setting up texlive-fonts-recommended (2018.20190131-1) ... Setting up texlive-plain-generic (2018.20190131-1) ... Setting up cmake (3.13.2-1) ... Setting up texlive-latex-base (2018.20190131-1) ... Setting up texlive-latex-recommended (2018.20190131-1) ... Setting up libboost-python1.67-dev (1.67.0-12) ... Setting up libpq-dev (11.1-2) ... Setting up texlive-pictures (2018.20190131-1) ... Setting up libsoup2.4-1:i386 (2.64.2-2) ... Setting up python-pandas (0.23.3-1fakesync1ubuntu2) ... Setting up imagemagick-6.q16 (8:6.9.10.14+dfsg-7ubuntu2) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up libsoup-gnome2.4-1:i386 (2.64.2-2) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-6) ... Setting up imagemagick (8:6.9.10.14+dfsg-7ubuntu2) ... Setting up texlive-generic-extra (2018.20190131-1) ... Setting up librest-0.7-0:i386 (0.8.1-1) ... Setting up latexmk (1:4.61-0.1) ... Setting up libboost-python-dev (1.67.0.1) ... Setting up postgresql-server-dev-11 (11.1-2) ... Setting up librsvg2-2:i386 (2.44.10-1) ... Setting up texlive-latex-extra (2018.20190131-1) ... Setting up librsvg2-common:i386 (2.44.10-1) ... Setting up postgresql-server-dev-all (199) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-3) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-3) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-recommonmark (0.4.0+ds-5) ... Setting up python3-sphinx (1.8.3-2) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up humanity-icon-theme (0.6.15) ... Setting up dh-autoreconf (19) ... Setting up ubuntu-mono (16.10+18.10.20181005-0ubuntu1) ... Setting up dh-strip-nondeterminism (1.1.0-1) ... Setting up adwaita-icon-theme (3.30.0-0ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up debhelper (12ubuntu1) ... Setting up libgtk-3-0:i386 (3.24.4-1ubuntu1) ... Setting up librsvg2-bin (2.44.10-1) ... Setting up sbuild-build-depends-rdkit-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (240-5ubuntu2) ... Processing triggers for tex-common (6.10) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for libgdk-pixbuf2.0-0:i386 (2.38.0+dfsg-7) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic amd64 (i686) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-16ubuntu1 gcc-8_8.2.0-16ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-16ubuntu1 libstdc++6_8.2.0-16ubuntu1 linux-libc-dev_4.19.0-12.13 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-1 adwaita-icon-theme_3.30.0-0ubuntu1 apt_1.8.0~beta1 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_5.0-2ubuntu1 binfmt-support_2.2.0-1 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-i686-linux-gnu_2.31.1-11ubuntu1 bison_2:3.2.4.dfsg-1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20190110 clang-7_1:7.0.1-4 cmake_3.13.2-1 cmake-data_3.13.2-1 coreutils_8.30-1ubuntu1 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-16ubuntu1 dash_0.5.10.2-4ubuntu1 dbus_1.12.12-1ubuntu1 dbus-user-session_1.12.12-1ubuntu1 dconf-gsettings-backend_0.30.1-2 dconf-service_0.30.1-2 dctrl-tools_2.24-3 debconf_1.5.70 debhelper_12ubuntu1 debianutils_4.8.6.1 dh-autoreconf_19 dh-python_3.20180927ubuntu2 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 distro-info-data_0.39 dmsetup_2:1.02.145-4.1ubuntu4 docutils-common_0.14+dfsg-3 doxygen_1.8.13-10ubuntu1 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1ubuntu1 file_1:5.35-2 findutils_4.6.0+git+20190105-2 flex_2.6.4-6.2 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-5 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-16ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-16ubuntu1 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+------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Jan 31 13:20:34 2019 UTC gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rdkit_201809.1+dfsg-6.dsc dpkg-source: info: extracting rdkit in rdkit-201809.1+dfsg dpkg-source: info: unpacking rdkit_201809.1+dfsg.orig.tar.xz dpkg-source: info: unpacking rdkit_201809.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying NoDownloads.patch dpkg-source: info: applying postgres_v11_support.patch dpkg-source: info: applying postgres_Makefile_fixes.patch dpkg-source: info: applying postgres_disable_failing_tests.patch dpkg-source: info: applying sphinx_imgconverter.patch dpkg-source: info: applying catch2_header.patch dpkg-source: info: applying testcase_32bit_fix.patch dpkg-source: info: applying fix_coordgen_include_path.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16338414 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16338414 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16338414 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package rdkit dpkg-buildpackage: info: source version 201809.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean pg_buildext checkcontrol dh clean --with python2 --buildsystem=cmake --parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/rdkit-201809.1+dfsg' find /<>/rdkit-201809.1+dfsg -name "*.pyc" | xargs rm -f rm -f -r Projects/DbCLI/testData/bzr/ rdkit/Chem/inchi.py rm -f -r Docs/Book/_build Code/docs rdkit/docs Code/doxygen_sqlite3.db rm -f \ Code/ForceField/MMFF/test_data/MMFF94_dative_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_dative_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_reference.log \ Code/ForceField/MMFF/test_data/MMFF94s_reference.log \ Code/ForceField/MMFF/test_data/testMMFFForceField.log \ Code/GraphMol/Depictor/test_data/cis_trans_cpp.out.sdf \ Code/GraphMol/Depictor/test_data/collisions.out.sdf \ Code/GraphMol/Depictor/test_data/first_200.out.sdf \ Code/GraphMol/Depictor/test_data/test1.out.sdf \ Code/GraphMol/FileParsers/test_data/blah.sdf \ Code/GraphMol/FileParsers/test_data/cdk2_stereo.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.tdt \ Code/GraphMol/FileParsers/test_data/outNCI_first_200.props.sdf \ Code/GraphMol/FileParsers/test_data/outSmiles.csv \ Code/GraphMol/ForceFieldHelpers/UFF/test_data/Issue62.sdf \ Code/GraphMol/MolAlign/test_data/ref_e2_pyCrippenO3A.sdf \ Code/GraphMol/SLNParse/lex.yysln.cpp \ Code/GraphMol/SLNParse/sln.tab.cpp \ Code/GraphMol/SLNParse/sln.tab.hpp \ Code/GraphMol/SmilesParse/lex.yysmarts.cpp \ Code/GraphMol/SmilesParse/lex.yysmiles.cpp \ Code/GraphMol/SmilesParse/smarts.tab.cpp \ Code/GraphMol/SmilesParse/smarts.tab.hpp \ Code/GraphMol/SmilesParse/smiles.tab.cpp \ Code/GraphMol/SmilesParse/smiles.tab.hpp \ Code/GraphMol/Wrap/test_data/outNCI_few.sdf \ Code/GraphMol/Wrap/test_data/outSmiles.txt \ Code/RDGeneral/versions.cpp \ Docs/Book/Cartridge.rst \ Docs/Book/Cookbook.rst \ Docs/Book/Install.rst \ Docs/Book/Overview.rst \ rdkit/ML/Data/test_data/testgeneral.dat.pkl \ rdkit/ML/Data/test_data/testquant.qdat.pkl rm -f Code/RDGeneral/versions.h rdkit/sping/tests/testallps.ps dh_auto_clean pg_buildext clean /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v ### clean 11 ### make[1]: Leaving directory '/<>/rdkit-201809.1+dfsg' dh_clean -O--buildsystem=cmake -O--parallel debian/rules build-arch dh build-arch --with python2 --buildsystem=cmake --parallel dh_update_autotools_config -a -O--buildsystem=cmake -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/rdkit-201809.1+dfsg' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON \ -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF \ -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON \ -DRDK_OPTIMIZE_NATIVE=OFF cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_OPTIMIZE_NATIVE=OFF .. -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found Catch2 source in /<>/rdkit-201809.1+dfsg/External/catch/catch CATCH: /<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -- Found PythonInterp: /usr/bin/python (found version "2.7.15") -- Found PythonLibs: /usr/lib/i386-linux-gnu/libpython2.7.so (found version "2.7.15+") Python Install directory /usr/lib/python2.7/dist-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-5Kugy_/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Eigen3 not found, disabling the Descriptors3D build. -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.67.0 -- Found the following Boost libraries: -- serialization == Using strict rotor definition == Updating Filters.cpp from pains file == Done updating pains files -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/<>/rdkit-201809.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/rdkit-201809.1+dfsg' dh_auto_build cd obj-i686-linux-gnu && make -j4 make[2]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/<>/rdkit-201809.1+dfsg -B/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/CMakeFiles /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/External/catch /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/catch /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/External/INCHI-API /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/INCHI-API /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= Scanning dependencies of target catch Scanning dependencies of target inchi_support make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /<>/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /<>/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[4]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 0%] Built target catch make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= [ 0%] Built target inchi_support Scanning dependencies of target hc make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Scanning dependencies of target RDGeneral make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /<>/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hc.c cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /<>/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hcdriver.c [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/types.cpp [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/utils.cpp [ 2%] Linking C shared library ../../../../lib/libRDKithc.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2018.09.1 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2018.09.1 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 2%] Built target hc [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.cpp [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.cpp [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.cpp [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/versions.cpp [ 3%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 3%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDBoost /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target RDBoost make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build Scanning dependencies of target testRDValue make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Scanning dependencies of target testDict make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o Scanning dependencies of target DataStructs cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost && /usr/bin/c++ -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDBoost/Wrap.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDict.dir/testDict.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/testDict.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDGeneral/testRDValue.cpp make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.cpp [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.cpp [ 5%] Linking CXX shared library ../../lib/libRDKitRDBoost.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2018.09.1 CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2018.09.1 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 5%] Built target RDBoost make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= Scanning dependencies of target testMatrices make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 5%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Numerics/testMatrices.cpp [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.cpp [ 5%] Linking CXX executable testRDValue cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 5%] Built target testRDValue make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/EigenSolvers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= Scanning dependencies of target EigenSolvers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 5%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Utils.cpp [ 5%] Linking CXX executable testDict cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o -o testDict ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 6%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 [ 6%] Linking CXX executable testMatrices cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 6%] Built target testDict make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Catalogs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= [ 6%] Built target testMatrices [ 6%] Built target EigenSolvers make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Query /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Query /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= Scanning dependencies of target Catalogs [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/base64.cpp make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Scanning dependencies of target testQuery make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.cpp [ 6%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Query && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testQuery.dir/test.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Query/test.cpp [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.cpp [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.cpp [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.cpp make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= Scanning dependencies of target testMatCalc make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 7%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp [ 7%] Linking CXX executable testMatCalc cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 7%] Built target testMatCalc make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/SimDivPickers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target SimDivPickers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/DistPicker.cpp [ 7%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.09.1 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 7%] Built target Catalogs make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= Scanning dependencies of target Clustering make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 7%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/Clustering.cpp [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.cpp [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.cpp [ 8%] Linking CXX executable testQuery cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 9%] Built target testQuery make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= Scanning dependencies of target rdBase make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/RDBoost/Wrap/RDBase.cpp [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 9%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libRDKithc.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 9%] Built target Clustering [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.cpp [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.cpp [ 9%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 9%] Built target SimDivPickers make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/SimDivPickers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target testSimDivPickers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/testPickers.cpp [ 10%] Linking CXX executable testSimDivPickers cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread ../../lib/libRDKithc.so.1.2018.09.1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 10%] Built target testSimDivPickers [ 10%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.09.1 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 10%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= Scanning dependencies of target testDataStructs make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Scanning dependencies of target testFPB [ 11%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build Scanning dependencies of target testMultiFPB cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/testDatastructs.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 11%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o [ 12%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/testFPB.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/testMultiFPB.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/RDBoost/Wrap/RDBase.cpp:15: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In constructor ‘boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:185:56: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:155:58: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ [ 12%] Linking CXX executable testFPB cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 12%] Built target testFPB make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target cDataStructs make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DataStructs.cpp [ 14%] Linking CXX executable testMultiFPB cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 14%] Built target testMultiFPB make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= Scanning dependencies of target RDGeometryLib make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/point.cpp [ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.cpp [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DiscreteValueVect.cpp [ 14%] Linking CXX executable testDataStructs cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.cpp [ 14%] Built target testDataStructs [ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.cpp make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= Scanning dependencies of target rdMetricMatrixCalc make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 14%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/SparseIntVect.cpp [ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.cpp [ 14%] Linking CXX shared module ../../../rdkit/rdBase.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 15%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 15%] Built target RDGeometryLib make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target rdSimDivPickers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 15%] Built target rdBase [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:15: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h: In function ‘double RDDataManip::EuclideanDistanceMetric(const T1&, const T2&, unsigned int) [with T1 = PySequenceHolder; T2 = PySequenceHolder]’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ [ 15%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 15%] Built target rdMetricMatrixCalc [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_SparseBV.cpp /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp: In member function ‘RDKit::INT_VECT RDPickers::MaxMinPicker::lazyPick(T&, unsigned int, unsigned int, const INT_VECT&, int, double&) const [with T = RDPickers::pyobjFunctor]’: /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:63:48: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] return python::extract(dp_obj(i, j)); ^ /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:63:48: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] return python::extract(dp_obj(i, j)); ^ make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target InfoTheory make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 15%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory && /usr/bin/c++ -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp [ 16%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../../lib/libRDKithc.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 16%] Built target rdSimDivPickers make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target ChemicalFeatures make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 16%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/SparseIntVect.cpp:18: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h: In function ‘void {anonymous}::pyUpdateFromSequence(RDKit::SparseIntVect&, boost::python::api::object&) [with IndexType = long long int]’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h: In function ‘void {anonymous}::pyUpdateFromSequence(RDKit::SparseIntVect&, boost::python::api::object&) [with IndexType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ [ 16%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 16%] Built target ChemicalFeatures [ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp [ 17%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 17%] Built target InfoTheory make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testTransforms make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/testTransforms.cpp [ 17%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_BitOps.cpp [ 18%] Linking CXX executable testTransforms cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 18%] Built target testTransforms make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= Scanning dependencies of target testGrid make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 18%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/testGrid.cpp make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Geometry/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target rdGeometry make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 18%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/Wrap/Point.cpp [ 18%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/Wrap/UniformGrid3D.cpp [ 18%] Linking CXX executable testGrid cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 18%] Built target testGrid make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target Alignment make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 18%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.cpp [ 18%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.09.1 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 18%] Built target Alignment [ 19%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Geometry/Wrap/rdGeometry.cpp make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= Scanning dependencies of target GraphMol make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Atom.cpp [ 20%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_FPB.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.cpp [ 21%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Built target rdGeometry make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target rdInfoTheory make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/Data /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Data /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= Scanning dependencies of target cQuantize make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Data && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ML/Data/cQuantize.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.cpp [ 21%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp [ 21%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_Utils.cpp [ 21%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Built target cQuantize make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testChemicalFeatures make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/testChemicalFeatures.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Bond.cpp [ 21%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 21%] Linking CXX executable testChemicalFeatures cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Built target testChemicalFeatures [ 21%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Built target cDataStructs make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target testAlignment make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment/testAlignment.cpp make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdAlignment make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap/rdAlignment.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.cpp [ 21%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Built target rdInfoTheory [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FindRings.cpp [ 21%] Linking CXX executable testAlignment cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Built target testAlignment [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:16: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h: In function ‘void RDNumeric::Alignments::GetPointsFromPythonSequence(boost::python::api::object&, RDGeom::Point3DConstPtrVect&)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h: In function ‘PyObject* RDNumeric::Alignments::AlignPointPairs(boost::python::api::object, boost::python::api::object, boost::python::api::object, bool, unsigned int)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ [ 21%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 21%] Built target rdAlignment [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Canon.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Aromaticity.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Kekulize.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDiscriminators.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ConjugHybrid.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/AddHs.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Matrices.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Renumber.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/AdjustQuery.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.cpp [ 25%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.09.1 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 25%] Built target GraphMol make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= Scanning dependencies of target Trajectory make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Scanning dependencies of target MolTransforms make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Scanning dependencies of target SubstructMatch make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build [ 25%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.cpp make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.cpp Scanning dependencies of target SmilesParse make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build [ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.cpp make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.cpp [ 25%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 25%] Built target Trajectory make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= Scanning dependencies of target Subgraphs make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.cpp [ 25%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 25%] Built target MolTransforms [ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.cpp [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.cpp [ 26%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.cpp make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target PartialCharges make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.cpp [ 26%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Built target Subgraphs [ 26%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.cpp [ 26%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Built target SubstructMatch make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolTransforms make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.cpp [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.cpp [ 26%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Built target PartialCharges make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ShapeHelpers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp [ 26%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target MolCatalog make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 26%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Built target rdMolTransforms make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color= Scanning dependencies of target MolInterchange make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Parser.cpp [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/CXSmilesOps.cpp [ 27%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 27%] Built target ShapeHelpers [ 27%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy: In function ‘void yysmarts_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, void*, int, const char*)’: smarts.yy:24:29: warning: unused parameter ‘input’ [-Wunused-parameter] smarts.yy:25:46: warning: unused parameter ‘ms’ [-Wunused-parameter] smarts.yy:26:31: warning: unused parameter ‘lastAtom’ [-Wunused-parameter] smarts.yy:27:31: warning: unused parameter ‘lastBond’ [-Wunused-parameter] smarts.yy:28:9: warning: unused parameter ‘scanner’ [-Wunused-parameter] smarts.yy:28:21: warning: unused parameter ‘start_token’ [-Wunused-parameter] [ 28%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 28%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 28%] Built target MolCatalog make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target SLNParse make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 28%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.cpp [ 29%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.cpp [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smiles.tab.cpp [ 29%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Writer.cpp smiles.yy: In function ‘void yysmiles_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, std::__cxx11::list*, void*, int, const char*)’: smiles.yy:38:29: warning: unused parameter ‘input’ [-Wunused-parameter] smiles.yy:40:31: warning: unused parameter ‘lastAtom’ [-Wunused-parameter] smiles.yy:41:31: warning: unused parameter ‘lastBond’ [-Wunused-parameter] smiles.yy:42:42: warning: unused parameter ‘branchPoints’ [-Wunused-parameter] smiles.yy:43:9: warning: unused parameter ‘scanner’ [-Wunused-parameter] smiles.yy:43:21: warning: unused parameter ‘start_token’ [-Wunused-parameter] smiles.yy: In function ‘void yysmiles_error(const char*, std::vector*, std::__cxx11::list*, void*, int, const char*)’: smiles.yy:50:29: warning: unused parameter ‘input’ [-Wunused-parameter] smiles.yy:52:42: warning: unused parameter ‘branchPoints’ [-Wunused-parameter] smiles.yy:53:9: warning: unused parameter ‘scanner’ [-Wunused-parameter] smiles.yy:53:21: warning: unused parameter ‘start_token’ [-Wunused-parameter] [ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmarts.cpp [ 30%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/sln.tab.cpp [ 30%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 30%] Built target MolInterchange make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= Scanning dependencies of target rdtrajectory make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 30%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Trajectory.cpp [ 30%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdTrajectory.cpp sln.yy: In function ‘void yysln_error(const char*, std::vector*, bool, void*, const char*)’: sln.yy:60:43: warning: unused parameter ‘ms’ [-Wunused-parameter] sln.yy:60:51: warning: unused parameter ‘doQ’ [-Wunused-parameter] sln.yy:61:13: warning: unused parameter ‘scanner’ [-Wunused-parameter] [ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmiles.cpp make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= Scanning dependencies of target rdqueries make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 30%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdqueries.cpp [ 30%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/lex.yysln.cpp [ 30%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 30%] Built target SmilesParse make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdChemicalFeatures make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 30%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function ‘void yy_fatal_error(const char*, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2585:58: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function ‘void* yysln_alloc(yy_size_t, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2917:47: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function ‘void* yysln_realloc(void*, yy_size_t, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2922:62: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function ‘void yysln_free(void*, yyscan_t)’: /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2934:40: warning: unused parameter ‘yyscanner’ [-Wunused-parameter] [ 30%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 30%] Built target rdtrajectory [ 30%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp [ 31%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Queries.cpp [ 31%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.09.1 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 31%] Built target SLNParse make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 31%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.cpp [ 31%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/LinearSearch.cpp make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= Scanning dependencies of target Depictor make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 31%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.cpp [ 32%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.09.1 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 32%] Built target Optimizer make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolqueryTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 33%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/querytest.cpp [ 33%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 33%] Built target rdChemicalFeatures [ 33%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp [ 34%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.cpp [ 34%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 34%] Built target rdqueries make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolcpTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/cptest.cpp [ 34%] Linking CXX executable graphmolqueryTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 34%] Built target graphmolqueryTest make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestCanon make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/testCanon.cpp make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMemTest1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/memtest1.cpp [ 34%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.09.1 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 34%] Built target Depictor make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolIterTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 35%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/itertest.cpp [ 35%] Linking CXX executable graphmoltestCanon cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 35%] Built target graphmoltestCanon make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= Scanning dependencies of target test-valgrind make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/test-valgrind.cpp [ 36%] Linking CXX executable graphmolMemTest1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 36%] Built target graphmolMemTest1 make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms 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-I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.cpp [ 36%] Linking CXX executable graphmolcpTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 36%] Built target graphmolcpTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smaTest1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smatest.cpp [ 36%] Linking CXX executable graphmolIterTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 36%] Built target graphmolIterTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest2 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTest2.dir/test2.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/test2.cpp [ 37%] Linking CXX executable test-valgrind cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -o test-valgrind ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 37%] Built target test-valgrind [ 37%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.cpp [ 37%] Linking CXX executable smiTest2 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/smiTest2.dir/test2.cpp.o -o smiTest2 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 37%] Built target smiTest2 make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make 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/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.cpp [ 38%] Building CXX object 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38%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp [ 39%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 39%] Built target ChemTransforms make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target Fingerprints make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp [ 40%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.cpp [ 40%] Linking CXX executable smaTest1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 40%] Built target smaTest1 [ 40%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp [ 40%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o [ 40%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/PatternFingerprints.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.cpp [ 40%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.cpp make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/test1.cpp [ 40%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 40%] Built target FilterCatalog make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs2 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/test2.cpp [ 40%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.cpp [ 40%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp [ 41%] Linking CXX executable testSubgraphs2 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 41%] Built target testSubgraphs2 make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FragCatalog make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 41%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp [ 41%] Linking CXX executable testSubgraphs1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 41%] Built target testSubgraphs1 [ 42%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of ‘SparseBitVect* RDKit::FingerprintGenerator::getSparseFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:329:61: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:230:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const value_type’ {aka ‘const unsigned int’} [-Wsign-compare] if (val.second >= dp_fingerprintArguments->d_countBounds[i]) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of ‘SparseBitVect* RDKit::FingerprintGenerator::getSparseFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:337:61: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:230:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const value_type’ {aka ‘const unsigned int’} [-Wsign-compare] /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of ‘ExplicitBitVect* RDKit::FingerprintGenerator::getFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:360:61: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const value_type’ {aka ‘const unsigned int’} [-Wsign-compare] if (val.second >= dp_fingerprintArguments->d_countBounds[i]) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of ‘ExplicitBitVect* RDKit::FingerprintGenerator::getFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:367:61: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const value_type’ {aka ‘const unsigned int’} [-Wsign-compare] [ 43%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target testPartialCharges make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 43%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/test1.cpp make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target rdPartialCharges make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:138:39: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:139:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:140:16: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:138:39: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:139:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:140:16: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:86:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:86:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp [ 44%] Linking CXX executable testPartialCharges cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 44%] Built target testPartialCharges make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target MolChemicalFeatures make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = unsigned int; uint32_t = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:409:57: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:376:43: warning: unused parameter ‘ownsBondInvGen’ [-Wunused-parameter] const bool ownsAtomInvGen, const bool ownsBondInvGen) { ~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = long long unsigned int; uint32_t = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:418:57: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:376:43: warning: unused parameter ‘ownsBondInvGen’ [-Wunused-parameter] /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:39: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:62: warning: unused parameter ‘confId’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:160:29: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:163:16: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:39: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:62: warning: unused parameter ‘confId’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:160:29: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:163:16: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:137:39: warning: unused parameter ‘arguments’ [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:138:39: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:139:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:140:58: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:137:39: warning: unused parameter ‘arguments’ [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:138:39: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:139:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:140:58: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 44%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp [ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 44%] Built target rdPartialCharges [ 44%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.cpp [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp [ 44%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.cpp [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:39: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:62: warning: unused parameter ‘confId’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:115:29: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:117:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:118:16: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:39: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:62: warning: unused parameter ‘confId’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:115:29: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:117:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:118:16: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:91:39: warning: unused parameter ‘arguments’ [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:92:39: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:93:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:29: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:58: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:91:39: warning: unused parameter ‘arguments’ [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:92:39: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:93:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:29: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:58: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:11: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(bool, uint32_t, bool, std::vector, uint32_t) [with OutputType = long long unsigned int; uint32_t = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:161:7: required from ‘RDKit::FingerprintGenerator* RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(bool, uint32_t, RDKit::AtomInvariantsGenerator*, bool, std::vector, uint32_t, bool) [with OutputType = long long unsigned int; uint32_t = unsigned int]’ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:183:58: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:26:18: warning: ‘RDKit::TopologicalTorsion::TopologicalTorsionArguments::d_torsionAtomCount’ will be initialized after [-Wreorder] const uint32_t d_torsionAtomCount; ^~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:27:76: warning: base ‘RDKit::FingerprintArguments’ [-Wreorder] FingerprintArguments(countSimulation, countBounds, fpSize){}; ^ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:21:1: warning: when initialized here [-Wreorder] TopologicalTorsionArguments::TopologicalTorsionArguments( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdShapeHelpers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘std::vector*> RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:61:62: warning: unused parameter ‘confId’ [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:62:29: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:64:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘OutputType RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long long unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:44:39: warning: unused parameter ‘arguments’ [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:45:39: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:46:39: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:47:29: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:47:58: warning: unused parameter ‘hashResults’ [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 44%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 45%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so [ 45%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 45%] Built target FragCatalog make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target ReducedGraphs make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so [ 45%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 45%] Built target MolChemicalFeatures make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolInterchange make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolInterchange_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 45%] Built target Fingerprints make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target testSLNParse make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/test.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /<>/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13: /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function ‘boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)’: /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: ‘*((void*)(&)+12).RDGeom::Point3D::x’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: ‘*((void*)(&)+12).RDGeom::Point3D::y’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: ‘*((void*)(&)+12).RDGeom::Point3D::z’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: ‘*((void*)(&)+12).RDGeom::Point3D::x’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: ‘*((void*)(&)+12).RDGeom::Point3D::y’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: ‘*((void*)(&)+12).RDGeom::Point3D::z’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: ‘*((void*)(&)+12).RDGeom::Point3D::x’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: ‘*((void*)(&)+12).RDGeom::Point3D::y’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: ‘*((void*)(&)+12).RDGeom::Point3D::z’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: ‘*((void*)(&)+12).RDGeom::Point3D::x’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: ‘*((void*)(&)+12).RDGeom::Point3D::y’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: ‘*((void*)(&)+12).RDGeom::Point3D::z’ may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ [ 45%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 45%] Built target ReducedGraphs make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target rdSLNParse make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp [ 45%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o ../../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 45%] Built target rdMolInterchange make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= Scanning dependencies of target rdchem make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 46%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdchem.cpp [ 46%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 46%] Built target rdShapeHelpers [ 46%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Table.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Table.cpp [ 47%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 47%] Built target rdSLNParse make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= Scanning dependencies of target testOptimizer make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 47%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/testOptimizer.cpp [ 47%] Linking CXX executable testOptimizer cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 47%] Built target testOptimizer make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ForceField /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= Scanning dependencies of target ForceField make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/ForceField.cpp [ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.cpp [ 49%] Linking CXX executable testSLNParse cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 49%] Built target testSLNParse make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= Scanning dependencies of target FileParsers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp [ 49%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Atom.cpp [ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileParser.cpp [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.cpp [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.cpp [ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.cpp [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.cpp [ 49%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Bond.cpp [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.cpp [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.cpp [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.cpp [ 50%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Mol.cpp [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.cpp [ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.cpp [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.cpp [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.cpp make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= Scanning dependencies of target rdFingerprintGenerator make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.cpp [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDWriter.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function ‘const std::vector RDKit::FingerprintWrapper::convertPyArgumentsForBulk(const boost::python::list&)’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:190:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] for (int i = 0; i < len; i++) { ~~^~~~~ In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:17: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::MorganWrapper::getMorganGenerator(unsigned int, bool, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&, boost::python::api::object&) [with OutputType = long long unsigned int; uint32_t = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:121:63: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:24:50: warning: unused parameter ‘includeRingMembership’ [-Wunused-parameter] const bool onlyNonzeroInvariants, const bool includeRingMembership, ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:18: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::RDKitFPWrapper::getRDKitFPGenerator(unsigned int, unsigned int, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long long unsigned int; uint32_t = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:92:63: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:27:28: warning: unused variable ‘bondInvariantsGenerator’ [-Wunused-variable] BondInvariantsGenerator *bondInvariantsGenerator = nullptr; ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:19: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::TopologicalTorsionWrapper::getTopologicalTorsionFPGenerator(bool, uint32_t, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long long unsigned int; uint32_t = unsigned int]’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:75:63: required from here /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:26:28: warning: unused variable ‘bondInvariantsGenerator’ [-Wunused-variable] BondInvariantsGenerator *bondInvariantsGenerator = nullptr; ^~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.cpp [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp [ 52%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.cpp [ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Conformer.cpp [ 52%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.cpp [ 52%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 52%] Built target rdFingerprintGenerator [ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/RingInfo.cpp [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesWriter.cpp [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Conformer.cpp:20: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h: In member function ‘T PySequenceHolder::operator[](unsigned int) const [with T = double]’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp [ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/EditableMol.cpp [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.cpp make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolChemicalFeatures make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 53%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.cpp [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp [ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MonomerInfo.cpp [ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp [ 55%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileParser.cpp [ 55%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.cpp [ 55%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.cpp [ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp [ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileWriter.cpp [ 55%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.09.1 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBParser.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 55%] Built target ForceField make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target testReducedGraphs make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/test1.cpp [ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp [ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolBundle.cpp [ 55%] Linking CXX executable testReducedGraphs cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 55%] Built target testReducedGraphs make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target rdReducedGraphs make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp [ 56%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 56%] Built target rdMolChemicalFeatures make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= Scanning dependencies of target SubstructLibrary make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp [ 56%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 56%] Built target rdReducedGraphs make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ForceFieldHelpers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 56%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp [ 56%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBSupplier.cpp [ 57%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 57%] Built target SubstructLibrary [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MaeMolSupplier.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 58%] Built target rdchem [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.cpp [ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.cpp [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SVGParser.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp [ 59%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lmaeparser ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 59%] Built target FileParsers make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolTestsCatch make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Scanning dependencies of target graphmoltestPicklerGlobalSetting make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build Scanning dependencies of target graphmolMolOpsTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 59%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/catch_tests.cpp make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 59%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/testPicklerGlobalSettings.cpp [ 59%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/molopstest.cpp [ 59%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 59%] Built target ForceFieldHelpers make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestChirality make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 59%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/testChirality.cpp [ 59%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 59%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPickler make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/testPickler.cpp [ 60%] Linking CXX executable graphmoltestPickler cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Built target graphmoltestPickler make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= Scanning dependencies of target molBundleTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/testMolBundle.cpp [ 60%] Linking CXX executable graphmoltestChirality cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Built target graphmoltestChirality make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= Scanning dependencies of target hanoiTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/hanoitest.cpp [ 60%] Linking CXX executable molBundleTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Built target molBundleTest make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= Scanning dependencies of target resMolSupplierTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/resMolSupplierTest.cpp [ 60%] Linking CXX executable graphmolTestsCatch cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -o graphmolTestsCatch ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Built target graphmolTestsCatch make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target testDepictor make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/testDepictor.cpp [ 60%] Linking CXX executable hanoiTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Built target hanoiTest make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target rdDepictor make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp [ 61%] Linking CXX executable resMolSupplierTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target resMolSupplierTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTest1.dir/test.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/test.cpp [ 61%] Linking CXX executable testDepictor cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target testDepictor make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= Scanning dependencies of target cxsmilesTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/cxsmiles_test.cpp [ 61%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target rdDepictor make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= Scanning dependencies of target smiTestCatch make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/catch_tests.cpp [ 61%] Linking CXX executable cxsmilesTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target cxsmilesTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= Scanning dependencies of target testMol2ToMol make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMol2ToMol.cpp [ 61%] Linking CXX executable testMol2ToMol cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target testMol2ToMol make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= Scanning dependencies of target testTplParser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testTpls.cpp [ 61%] Linking CXX executable graphmolMolOpsTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target graphmolMolOpsTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= Scanning dependencies of target testMolWriter make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMolWriter.cpp [ 61%] Linking CXX executable testTplParser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target testTplParser make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= Scanning dependencies of target testMolSupplier make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMolSupplier.cpp [ 61%] Linking CXX executable smiTest1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser [ 61%] Linking CXX executable testMolWriter cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target testMolWriter make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= Scanning dependencies of target testSequence make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testSequence.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target smiTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= Scanning dependencies of target testExtendedStereoParsing make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp [ 61%] Linking CXX executable testSequence cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target testSequence make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersTest1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/test1.cpp [ 61%] Linking CXX executable testExtendedStereoParsing cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -o testExtendedStereoParsing ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target testExtendedStereoParsing make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersCatchTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/catch_tests.cpp [ 63%] Linking CXX executable testMolSupplier cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 63%] Built target testMolSupplier make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target testSubstructMatch make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 63%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/test1.cpp [ 63%] Linking CXX executable smiTestCatch cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 63%] Built target smiTestCatch make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= Scanning dependencies of target Descriptors make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.cpp [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.cpp [ 63%] Linking CXX executable testSubstructMatch cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 63%] Built target testSubstructMatch make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testChemTransforms make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 64%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/testChemTransforms.cpp [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.cpp [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.cpp [ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp [ 65%] Linking CXX executable testChemTransforms cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 65%] Built target testChemTransforms make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= Scanning dependencies of target filterCatalogTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 65%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp [ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.cpp [ 65%] Linking CXX executable fileParsersCatchTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -o fileParsersCatchTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 65%] Built target fileParsersCatchTest make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= 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-fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.cpp [ 66%] Linking CXX executable filterCatalogTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 66%] Built target filterCatalogTest make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testFragCatalog make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/test1.cpp [ 66%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp [ 66%] Linking CXX executable fileParsersTest1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lmaeparser ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 66%] Built target fileParsersTest1 make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfragcatalog make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.cpp [ 66%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp [ 66%] Linking CXX executable testFragCatalog cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 66%] Built target testFragCatalog [ 66%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp [ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.cpp [ 68%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp [ 68%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp [ 68%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.09.1 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 68%] Built target Descriptors make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprints make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/test1.cpp make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprintGenerators make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h:21, from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:12: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function ‘void testAtomPairNonSparseBitvector()’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:225:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] TEST_ASSERT(isSet == (it->second >= defaultCountBounds[i])); /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro ‘TEST_ASSERT’ if (!(expr)) { \ ^~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:242:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__gnu_cxx::__alloc_traits, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] TEST_ASSERT(isSet == (it->second >= defaultCountBounds[i])); /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro ‘TEST_ASSERT’ if (!(expr)) { \ ^~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function ‘void testBulkFP()’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:2388:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] for (int i = 0; i < results->size(); i++) { ~~^~~~~~~~~~~~~~~~~ [ 69%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target rdfragcatalog make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testMolTransforms make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/test1.cpp [ 69%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target rdfiltercatalog make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceFieldHelpers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp [ 69%] Linking CXX executable testMolTransforms cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target testMolTransforms make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testFeatures make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp [ 69%] Linking CXX executable testFingerprintGenerators cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target testFingerprintGenerators make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testMolCatalog make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/test1.cpp [ 69%] Linking CXX executable testFeatures cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 69%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target testFeatures make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolCatalog make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 70%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 70%] Built target rdForceFieldHelpers make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= Scanning dependencies of target FMCS make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 70%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.cpp [ 70%] Linking CXX executable testMolCatalog cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 70%] Built target testMolCatalog make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= Scanning dependencies of target MolHash make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 71%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.cpp [ 71%] Linking CXX executable testFingerprints cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 71%] Built target testFingerprints make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= Scanning dependencies of target MMPA make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 71%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.cpp [ 71%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.cpp [ 71%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 71%] Built target rdMolCatalog make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target StructChecker make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 71%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.cpp [ 71%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/HashToString.cpp [ 71%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.09.1 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 71%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 71%] Built target MMPA [ 71%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructureFlags.cpp [ 71%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp [ 71%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.09.1 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 71%] Built target MolHash [ 72%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.cpp make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/trajectoryTest.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function ‘bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector >&)’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:354:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d", &n); ~~~~~~^~~~~~~~~~~~~~ [ 72%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.cpp make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= Scanning dependencies of target substructLibraryTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp [ 73%] Linking CXX executable trajectoryTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 73%] Built target trajectoryTest make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= Scanning dependencies of target rdSubstructLibrary make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 73%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp [ 73%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.cpp [ 73%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.cpp [ 73%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp [ 73%] Linking CXX executable substructLibraryTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 73%] Built target substructLibraryTest [ 73%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp [ 73%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.09.1 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 73%] Built target FMCS make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --color= Scanning dependencies of target molInterchangeTest1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 73%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/test1.cpp make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolfiles make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdmolfiles.cpp [ 73%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.cpp [ 73%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.cpp [ 73%] Linking CXX executable molInterchangeTest1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -o molInterchangeTest1 ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 73%] Built target molInterchangeTest1 [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp [ 74%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.cpp [ 74%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 74%] Built target rdSubstructLibrary make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/UFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceField make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 74%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/testUFFForceField.cpp [ 74%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.09.1 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 74%] Built target StructChecker [ 74%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MaeMolSupplier.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:23: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In constructor ‘boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:185:56: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:155:58: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SDMolSupplier.cpp /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTMolSupplier.cpp [ 75%] Linking CXX executable testUFFForceField cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 75%] Built target testUFFForceField make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DistGeom /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeometry make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 75%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MaeMolSupplier.cpp:21: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In constructor ‘boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:185:56: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:155:58: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.cpp [ 75%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesMolSupplier.cpp make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target MolAlign make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 75%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.cpp [ 75%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp [ 75%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.cpp make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ForceField/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceField make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 76%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/Wrap/ForceField.cpp [ 76%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.cpp [ 76%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.09.1 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 76%] Built target DistGeometry make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolTest1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 77%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/test1.cpp [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesWriter.cpp [ 77%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.09.1 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 77%] Built target MolAlign make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target ChemReactions make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.cpp /<>/rdkit-201809.1+dfsg/Code/ForceField/Wrap/ForceField.cpp: In member function ‘double ForceFields::PyForceField::calcEnergyWithPos(const boost::python::api::object&)’: /<>/rdkit-201809.1+dfsg/Code/ForceField/Wrap/ForceField.cpp:135:12: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] c[i] = python::extract(pos[i]); /<>/rdkit-201809.1+dfsg/Code/ForceField/Wrap/ForceField.cpp: In member function ‘PyObject* ForceFields::PyForceField::calcGradWithPos(const boost::python::api::object&)’: /<>/rdkit-201809.1+dfsg/Code/ForceField/Wrap/ForceField.cpp:169:12: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] c[i] = python::extract(pos[i]); In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesWriter.cpp:20: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In constructor ‘boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:185:56: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:155:58: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/MDLParser.cpp [ 78%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SDWriter.cpp [ 78%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 78%] Built target rdForceField [ 78%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTWriter.cpp [ 78%] Linking CXX executable graphmolTest1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 78%] Built target graphmolTest1 [ 79%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/PDBWriter.cpp [ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/DaylightParser.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SDWriter.cpp:21: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In constructor ‘boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:185:56: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:155:58: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target testDescriptors make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/test.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTWriter.cpp:21: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In constructor ‘boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:185:56: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:155:58: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/PDBWriter.cpp:20: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In constructor ‘boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:185:56: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:155:58: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ [ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionWriter.cpp /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 79%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 79%] Built target rdmolfiles make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= Scanning dependencies of target testAUTOCORR2D make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp [ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionDepict.cpp [ 80%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp [ 80%] Linking CXX executable testAUTOCORR2D cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -o testAUTOCORR2D ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 80%] Built target testAUTOCORR2D make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDescriptors make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp [ 80%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.cpp [ 80%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/MoleculeParser.cpp [ 80%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.cpp [ 80%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.cpp [ 80%] Linking CXX executable testDescriptors cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 80%] Built target testDescriptors make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolAlign make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testShapeHelpers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /<>/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /<>/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h:19, from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12: /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function ‘boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)’: /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:85:15: warning: ‘*((void*)(&)+12).RDGeom::Point3D::x’ may be used uninitialized in this function [-Wmaybe-uninitialized] x = other.x; ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:86:15: warning: ‘*((void*)(&)+12).RDGeom::Point3D::y’ may be used uninitialized in this function [-Wmaybe-uninitialized] y = other.y; ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:87:15: warning: ‘*((void*)(&)+12).RDGeom::Point3D::z’ may be used uninitialized in this function [-Wmaybe-uninitialized] z = other.z; ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function ‘boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)’: /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:85:15: warning: ‘*((void*)(&)+12).RDGeom::Point3D::x’ may be used uninitialized in this function [-Wmaybe-uninitialized] x = other.x; ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:86:15: warning: ‘*((void*)(&)+12).RDGeom::Point3D::y’ may be used uninitialized in this function [-Wmaybe-uninitialized] y = other.y; ~~~~~~^ /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h:87:15: warning: ‘*((void*)(&)+12).RDGeom::Point3D::z’ may be used uninitialized in this function [-Wmaybe-uninitialized] z = other.z; ~~~~~~^ [ 80%] Linking CXX executable testShapeHelpers cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function ‘RDKit::MolAlign::PyO3A* RDKit::MolAlign::getCrippenO3A(RDKit::ROMol&, RDKit::ROMol&, boost::python::list, boost::python::list, int, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:451:40: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] (python::len(prbCrippenContribs) == prbNAtoms)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:466:40: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] (python::len(refCrippenContribs) == refNAtoms)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function ‘boost::python::tuple RDKit::MolAlign::getCrippenO3AForConfs(RDKit::ROMol&, RDKit::ROMol&, int, boost::python::list, boost::python::list, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:532:40: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] (python::len(prbCrippenContribs) == prbNAtoms)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:547:40: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] (python::len(refCrippenContribs) == refNAtoms)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 80%] Built target testShapeHelpers make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= Scanning dependencies of target testFMCS make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/testFMCS_Unit.cpp [ 80%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.cpp In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:24: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h: In function ‘RDNumeric::DoubleVector* RDKit::_translateWeights(boost::python::api::object)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h:68:9: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] T res = python::extract(d_seq[which]); ^~~ [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp [ 81%] Linking CXX executable testFMCS cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 81%] Built target testFMCS [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 81%] Built target rdMolAlign make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= Scanning dependencies of target rdFMCS make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 81%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 81%] Built target rdMolDescriptors make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Test /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= Scanning dependencies of target FMCStest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function ‘std::__cxx11::string testChEMBL_Txt(const char*, double, const char*)’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:501:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wformat=] fprintf(fres, "%s;%lu;%.1f;%.4f;%u;%u;%s;", test, mols.size(), th, sec, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function ‘void testFileSDF_RandomSet_SMI(const char*, const char*)’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1172:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wformat=] fprintf(fcsv, "%u;%lu;%s;%.3f;%u;%u;%s;", n, mols.size(), ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1184:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wformat=] fprintf(fcsv, "%u;%lu;%s;%.3f;%u;%u;%s\n", n, mols.size(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function ‘void testFileSDF_RandomSet(const char*, const char*)’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1279:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wformat=] fprintf(fcsv, "%u;%lu;%s;%.5f;%u;%u;%s;", n, mols.size(), ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1328:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wformat=] fprintf(fcsv, "%u;%lu;%s;%.5f;%u;%u;%s;", n, mols.size(), ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1408:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wformat=] fprintf(fcsv, "%u;%lu;%s;%.5f;%u;%u;%s;", n, mols.size(), ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target testMolHash make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/testMolHash.cpp [ 82%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 82%] Built target rdFMCS make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolHash make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp [ 82%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 82%] Built target ChemReactions make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= Scanning dependencies of target testMMPA make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA_UnitTest.cpp [ 82%] Linking CXX executable FMCStest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 82%] Built target FMCStest make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= Scanning dependencies of target rdMMPA make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 83%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp [ 83%] Linking CXX executable testMolHash cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 83%] Built target testMolHash make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target testStructChecker make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/testStructChecker.cpp [ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 84%] Built target rdMolHash make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target rdStructChecker make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap/structchecker.cpp [ 84%] Linking CXX executable testMMPA cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 84%] Built target testMMPA make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= Scanning dependencies of target RGroupDecomposition make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp [ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 84%] Built target rdMMPA make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= Scanning dependencies of target MolStandardize make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.cpp [ 85%] Linking CXX executable testStructChecker cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -o testStructChecker ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 85%] Built target testStructChecker [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.cpp [ 85%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o ../../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 85%] Built target rdStructChecker [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.cpp make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeomHelpers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 85%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.cpp [ 85%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 85%] Built target RGroupDecomposition [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.cpp [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.cpp [ 85%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.cpp make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DistGeom /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeom make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 85%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DistGeom/testDistGeom.cpp [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.cpp make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeom make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 86%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/Wrap && /usr/bin/c++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/DistGeom/Wrap/DistGeom.cpp [ 86%] Linking CXX executable testDistGeom cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 86%] Built target testDistGeom [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp [ 87%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 87%] Built target DistGeomHelpers make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= Scanning dependencies of target testReaction make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReaction.cpp make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= Scanning dependencies of target testEnumeration make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp [ 88%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 88%] Built target DistGeom make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testReactionFingerprints make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp [ 88%] Linking CXX executable testEnumeration cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 88%] Built target testEnumeration make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= Scanning dependencies of target rxnTestCatch make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/catch_tests.cpp [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp [ 88%] Linking CXX executable testReactionFingerprints cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 88%] Built target testReactionFingerprints make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target rdChemReactions make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp [ 89%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o 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../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 89%] Built target rxnTestCatch make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make 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89%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp [ 91%] Linking CXX executable testReaction cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 91%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -lboost_serialization make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 91%] Built target testReaction make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceFieldHelpers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 91%] Built target MolStandardize make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testCrystalForceField make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp [ 91%] Linking CXX executable testMMFFForceFieldHelpers cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 91%] Built target testMMFFForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeomHelpers make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp [ 91%] Linking CXX executable testCrystalForceField cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 91%] Built target testCrystalForceField make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target rdDistGeom make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 92%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 93%] Built target rdChemReactions make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target testMolAlign make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/testMolAlign.cpp [ 93%] Linking CXX executable testUFFForceFieldHelpers cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 93%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= Scanning dependencies of target MolDraw2D make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.cpp [ 93%] Linking CXX executable testDistGeomHelpers cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 93%] Built target testDistGeomHelpers make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= Scanning dependencies of target testRGroupDecomp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 93%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 93%] Built target rdDistGeom [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp [ 94%] Linking CXX executable testMolAlign cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 94%] Built target testMolAlign make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= Scanning dependencies of target rdRGroupDecomposition make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp [ 94%] Linking CXX executable testRGroupDecomp cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 94%] Built target testRGroupDecomp make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= Scanning dependencies of target molNormalizeTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testNormalize.cpp make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= Scanning dependencies of target molValidateTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testValidate.cpp [ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp [ 95%] Linking CXX executable molNormalizeTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 95%] Built target molNormalizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= Scanning dependencies of target molStandardizeTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/test1.cpp [ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp [ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 95%] Built target rdRGroupDecomposition make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= Scanning dependencies of target molChargeTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testCharge.cpp [ 95%] Linking CXX executable molValidateTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 95%] Built target molValidateTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= Scanning dependencies of target molStandardizeSmallTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/test2.cpp [ 96%] Linking CXX executable molChargeTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 96%] Built target molChargeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color= Scanning dependencies of target molTautomerTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testTautomer.cpp [ 96%] Linking CXX executable molStandardizeTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 96%] Built target molStandardizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= Scanning dependencies of target molFragmentTest make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testFragment.cpp [ 96%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -lboost_serialization [ 96%] Linking CXX executable molStandardizeSmallTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 96%] Built target MolDraw2D make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolStandardize make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 96%] Built target molStandardizeSmallTest [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Validate.cpp [ 96%] Linking CXX executable molFragmentTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -o molFragmentTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 96%] Built target molFragmentTest make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make 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/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/testMMFFForceField.cpp make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= Scanning dependencies of target moldraw2DTest1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/test1.cpp [ 97%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Charge.cpp [ 97%] Linking CXX executable testMMFFForceField cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 97%] Built target testMMFFForceField make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= Scanning dependencies of target moldraw2DRxnTest1 make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/rxn_test1.cpp [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp [ 99%] Linking CXX executable moldraw2DTest1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 99%] Built target moldraw2DTest1 make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDraw2D make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 99%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp [ 99%] Linking CXX executable moldraw2DRxnTest1 cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 99%] Built target moldraw2DRxnTest1 make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolops make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[4]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 99%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdmolops.cpp [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp [ 99%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolOps.cpp /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp: In function ‘void RDKit::{anonymous}::pyDictToDoubleMap(boost::python::api::object, std::map&)’: /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp:54:57: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] double r = python::extract(tDict.values()[i]); ^ [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_32BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/<>/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/<>/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/<>/rdkit-201809.1+dfsg/Code -I/<>/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Metal.cpp [ 99%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 99%] Built target rdMolDraw2D [ 99%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o ../../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 99%] Built target rdMolStandardize [100%] Linking CXX executable molTautomerTest cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [100%] Built target molTautomerTest In file included from /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolOps.cpp:30: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:336:16: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] result = off_type(bp::extract(py_tell())); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h: In constructor ‘boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)’: /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:185:56: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h:155:58: warning: ‘*((void*)& +12)’ may be used uninitialized in this function [-Wmaybe-uninitialized] off_type py_pos = bp::extract(py_tell()); ^ [100%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [100%] Built target rdmolops make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' STATIC_LINK=0 RDKIT_LIBDIR=/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu//lib pg_buildext build /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v ### build 11 ### make[2]: Entering directory '/<>/rdkit-201809.1+dfsg/build-11' gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rdkit_io.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_io.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o mol_op.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘mol_murckoscaffold’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:253:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] CROMol scaffold = MolMurckoScaffold(mol); ^~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘mol_hash’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:273:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *res = pnstrdup(str, len); ^~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘mol_adjust_query_properties’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:286:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *data = PG_GETARG_CSTRING(1); ^~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:290:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] Mol *res = deconstructROMol(adj); ^~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘mol_to_svg’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:305:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *legend = PG_GETARG_CSTRING(1); ^~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_smiles’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:329:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *res = pnstrdup(str, strlen(str)); ^~~~ In file included from /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_mol2s_transition’: /usr/include/postgresql/11/server/fmgr.h:238:29: warning: initialization of ‘CROMol’ {aka ‘void *’} from ‘Datum’ {aka ‘unsigned int’} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro ‘PG_GETARG_DATUM’ CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:397:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] text *ts = (text *)palloc(ts_size); // new return value ^~~~ In file included from /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /usr/include/postgresql/11/server/fmgr.h:238:29: warning: initialization of ‘CROMol’ {aka ‘void *’} from ‘Datum’ {aka ‘unsigned int’} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro ‘PG_GETARG_DATUM’ CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:417:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *smiles = makeMolText(mol, &len, false); ^~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_mols’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:455:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int32 ts_size = VARHDRSZ + strlen(str); ^~~~~ In file included from /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_mol_transition’: /usr/include/postgresql/11/server/fmgr.h:238:29: warning: initialization of ‘CROMol’ {aka ‘void *’} from ‘Datum’ {aka ‘unsigned int’} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro ‘PG_GETARG_DATUM’ CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /usr/include/postgresql/11/server/fmgr.h:238:29: warning: initialization of ‘CROMol’ {aka ‘void *’} from ‘Datum’ {aka ‘unsigned int’} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro ‘PG_GETARG_DATUM’ CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_smiles_transition’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function ‘fmcs_mol_transition’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_op.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_op.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o sfp_op.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/sfp_op.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rxn_op.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment] // /* keep compiler quiet - no extra ; */ \ ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c: In function ‘reaction_to_svg’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c:179:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] bool highlightByReactants = PG_GETARG_BOOL(1); ^~~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rdkit_gist.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘soergeldistsign’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:240:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *as = (uint8 *)VARDATA(a); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘soergeldist’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function ‘floor’ [-Wimplicit-function-declaration] return (int) floor(10000*soergeldistsign(a, b)); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function ‘floor’ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: note: include ‘’ or provide a declaration of ‘floor’ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:42:1: +#include /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: return (int) floor(10000*soergeldistsign(a, b)); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable ‘d’ [-Wunused-variable] double d; ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘gmol_consistent’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:526:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:538:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:570:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘rdkit_consistent’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:658:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int siglen = SIGLEN(query); ^~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:673:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘gsfp_consistent’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:708:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int sum, overlapSum, overlapN; ^~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:714:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int nKey = (ISALLTRUE(key)) ? ^~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function ‘greaction_consistent’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:787:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:804:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:832:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ At top level: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:646:1: warning: ‘rdkit_consistent’ defined but not used [-Wunused-function] rdkit_consistent(GISTENTRY *entry, StrategyNumber strategy, bytea *key, bytea *query) ^~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:261:1: warning: ‘soergeldist’ defined but not used [-Wunused-function] soergeldist(bytea *a, bytea *b) { ^~~~~~~~~~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_gist.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c: In function ‘merge_key’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c:699:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int siglen = GBFP_INNER_SIGLEN(result); ^~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_gin.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gin.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o low_gist.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c: In function ‘gslfp_consistent’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function ‘searchSfpCache’ [-Wimplicit-function-declaration] fcinfo->flinfo->fn_extra = searchSfpCache( ^~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to ‘void *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] fcinfo->flinfo->fn_extra = searchSfpCache( ^ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o guc.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/guc.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o cache.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c: In function ‘createCache’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c:312:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] methodsOrig = ctx->methods; ^ In file included from /usr/include/postgresql/11/server/postgres.h:47, from /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c:33: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c:341:19: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘unsigned int’ [-Wformat=] elog(ERROR, "Could not allocate %ld bytes", sizeof(*newholder)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /usr/include/postgresql/11/server/utils/elog.h:202:23: note: in definition of macro ‘elog’ elog_finish(elevel, __VA_ARGS__); \ ^~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-function -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o adapter.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/adapter.cpp gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bitstring.o /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c: In function ‘bitstringUnion’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable ‘i’ [-Wunused-variable] int i; ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c: In function ‘bitstringIntersection’: /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable ‘i’ [-Wunused-variable] int i; ^ g++ -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -shared -o rdkit.so rdkit_io.o mol_op.o bfp_op.o sfp_op.o rxn_op.o rdkit_gist.o bfp_gist.o bfp_gin.o low_gist.o guc.o cache.o adapter.o bitstring.o -L/usr/lib/i386-linux-gnu -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib/llvm-7/lib -L/usr/lib/i386-linux-gnu/mit-krb5 -Wl,--as-needed -g -O2 -fdebug-prefix-map=/<>/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu//lib -lRDKitMolDraw2D -lRDKitMolTransforms -lRDKitMolHash -lRDKitFMCS -lRDKitChemReactions -lRDKitChemTransforms -lRDKitFileParsers -lRDKitSmilesParse -lRDKitFingerprints -lRDKitSubgraphs -lRDKitDescriptors -lRDKitPartialCharges -lRDKitSubstructMatch -lRDKitGraphMol -lRDKitEigenSolvers -lRDKitDataStructs -lRDKitDepictor -lRDKitRDGeometryLib -lRDKitRDGeneral -pthread sed -e's/@RDKIT_PG_BFP_GIST_FETCH@/FUNCTION 9 gbfp_fetch (internal),/;' \ -e's/@RDKIT_GIN_BFP_TRICONSISTENT@/FUNCTION 6 gin_bfp_triconsistent(internal, int2, bfp, int4, internal, internal, internal),/' \ -e's/@RDKIT_PARALLEL_SAFE@/PARALLEL SAFE/' \ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit.sql.in > rdkit--3.7.sql /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rdkit_io.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_io.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o mol_op.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control may reach end of non-void function [-Wreturn-type] } ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:381:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned int') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:409:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned int') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:477:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned int') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:488:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned int') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control may reach end of non-void function [-Wreturn-type] } ^ 6 warnings generated. /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_op.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o sfp_op.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/sfp_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rxn_op.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rdkit_gist.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_gist.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_gin.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gin.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o low_gist.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' is invalid in C99 [-Wimplicit-function-declaration] fcinfo->flinfo->fn_extra = searchSfpCache( ^ /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:28: warning: incompatible integer to pointer conversion assigning to 'void *' from 'int' [-Wint-conversion] fcinfo->flinfo->fn_extra = searchSfpCache( ^ ~~~~~~~~~~~~~~~ 2 warnings generated. /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o guc.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/guc.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o cache.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c:312:17: warning: assigning to 'MemoryContextMethods *' (aka 'struct MemoryContextMethods *') from 'const MemoryContextMethods *' (aka 'const struct MemoryContextMethods *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] methodsOrig = ctx->methods; ^ ~~~~~~~~~~~~ 1 warning generated. /usr/bin/clang-7 -xc++ -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -emit-llvm -c -o adapter.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/adapter.cpp opt-7 -module-summary -f adapter.bc -o adapter.bc /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/<>/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bitstring.bc /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c make[2]: Leaving directory '/<>/rdkit-201809.1+dfsg/build-11' (cd /<>/rdkit-201809.1+dfsg/Code; doxygen doxygen/doxygen.config) warning: Tag `SYMBOL_CACHE_SIZE' at line 337 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 557 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 971 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `USE_INLINE_TREES' at line 1162 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1425 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1431 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/tutorial Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/libs Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/QTDemo Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/Catalogs Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/DataStructs Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/Query Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ML Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ML/Cluster Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ML/Data Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/DataManip Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/SimDivPickers Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/RDGeneral Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/RDGeneral/hash Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/RDGeneral/hash/detail Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/RDBoost Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/DistGeom Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ForceField Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/Numerics Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/Geometry Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/Features Searching for files in directory /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures Reading and parsing tag files Parsing files Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Atom.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Atom.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Bond.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Bond.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/CartesianProduct.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/CartesianProduct.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateBase.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateBase.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSample.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSample.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionParser.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionParser.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR3D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR3D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/EEM.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/EEM.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/GETAWAY.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/GETAWAY.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors3D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors3D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MORSE.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MORSE.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PBF.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PBF.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PMI.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PMI.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RDF.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RDF.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RegisterDescriptor.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RegisterDescriptor.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/WHIM.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/WHIM.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/details.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/details.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParserUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParserUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolWriters.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolWriters.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Composition2N.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Composition2N.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DebugTrace.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DebugTrace.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Graph.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Graph.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MatchTable.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MatchTable.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/RingMatchTableSet.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/RingMatchTableSet.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SeedSet.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SeedSet.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructureCache.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructureCache.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Target.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Target.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/TargetMatch.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/TargetMatch.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolBundle.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolBundle.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalog.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalog.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DQt.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DQt.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MultiMolDraw2D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MultiMolDraw2D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/details.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/details.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/MolInterchange.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/MolInterchange.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/MonomerInfo.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MonomerInfo.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/RDKitQueries.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/RDKitQueries.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Rings.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Rings.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SanitException.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SanitException.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParseOps.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParseOps.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/primes.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/primes.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Snapshot.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Snapshot.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/base64.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/base64.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitVects.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitVects.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitVectUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitVectUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/DatastructsException.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/DatastructsException.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataStructs/SparseIntVect.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataStructs/SparseIntVect.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/AndQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/AndQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/EqualityQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/EqualityQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/GreaterEqualQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/GreaterEqualQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/GreaterQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/GreaterQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/LessEqualQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/LessEqualQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/LessQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/LessQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/OrQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/OrQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/Query.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/Query.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/QueryObjects.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/QueryObjects.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/RangeQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/RangeQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/SetQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/SetQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Query/XOrQuery.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Query/XOrQuery.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/CorrMatGenerator.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/CorrMatGenerator.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoGainFuncs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoGainFuncs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/DistPicker.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/DistPicker.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/BadFileException.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/BadFileException.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/BoostEndInclude.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/BoostEndInclude.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/BoostStartInclude.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/BoostStartInclude.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Exceptions.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Exceptions.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/export.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/export.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/FileParseException.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/FileParseException.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/hanoiSort.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/hanoiSort.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Ranking.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/Ranking.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDAny.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDAny.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDConfig.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDConfig.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDProps.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDProps.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDThreads.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDThreads.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-doublemagic.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-doublemagic.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-taggedunion.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-taggedunion.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/StreamOps.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/StreamOps.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/types.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/types.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/utils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/utils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDGeneral/versions.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDGeneral/versions.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDBoost/boost_numpy.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDBoost/boost_numpy.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDBoost/import_array.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDBoost/import_array.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDBoost/iterator_next.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDBoost/iterator_next.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDBoost/pyint_api.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDBoost/pyint_api.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDBoost/python.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDBoost/python.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DistGeom/BoundsMatrix.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DistGeom/BoundsMatrix.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DistGeom/ChiralSet.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DistGeom/ChiralSet.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DistGeom/FourthDimContrib.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DistGeom/FourthDimContrib.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/Contrib.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/Contrib.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Numerics/Matrix.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Numerics/Matrix.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Numerics/SquareMatrix.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Numerics/SquareMatrix.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Numerics/SymmMatrix.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Numerics/SymmMatrix.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Numerics/Vector.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Numerics/Vector.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Geometry/Grid3D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Geometry/Grid3D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Geometry/point.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Geometry/Transform.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Geometry/Transform.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Geometry/Utils.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Geometry/Utils.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/Features/Feature.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/Features/Feature.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/ChemicalFeature.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/ChemicalFeature.h... Preprocessing /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.h... Parsing file /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.h... Building group list.../<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h:15: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files: /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h Please use a more specific name by including a (larger) part of the path! /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h:13: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files: /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h Please use a more specific name by including a (larger) part of the path! Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file AcidBaseCatalogEntry.h... Generating code for file AcidBaseCatalogParams.h... Generating code for file AcidBaseCatalogUtils.h... Generating code for file AlignMolecules.h... Generating code for file AlignPoints.h... Generating code for file AndQuery.h... Generating code for file AngleBend.h... Generating code for file AngleBend.h... Generating code for file AngleConstraint.h... Generating code for file AngleConstraint.h... Generating code for file Atom.h... Generating code for file atomic_data.h... Generating code for file AtomIterators.h... Generating code for file AtomPairGenerator.h... Generating code for file AtomPairs.h... Generating code for file AtomTyper.h... Generating code for file AtomTyper.h... Generating code for file AUTOCORR2D.h... Generating code for file AUTOCORR3D.h... Generating code for file BadFileException.h... Generating code for file base64.h... Generating code for file BFGSOpt.h... Generating code for file BitOps.h... Generating code for file BitVect.h... Generating code for file BitVects.h... Generating code for file BitVectUtils.h... Generating code for file Bond.h... Generating code for file BondIterators.h... Generating code for file BondStretch.h... Generating code for file BondStretch.h... Generating code for file boost_numpy.h... Generating code for file BoostEndInclude.h... Generating code for file BoostStartInclude.h... Generating code for file BoundsMatrix.h... Generating code for file BoundsMatrixBuilder.h... Generating code for file Builder.h... Generating code for file Builder.h... Generating code for file Canon.h... Generating code for file CartesianProduct.h... Generating code for file Catalog.h... Generating code for file CatalogEntry.h... Generating code for file CatalogParams.h... Generating code for file Charge.h... Generating code for file ChemicalFeature.h... Generating code for file ChemTransforms.h... Generating code for file Chirality.h... Generating code for file ChiralSet.h... Generating code for file ChiralViolationContrib.h... Generating code for file Composition2N.h... Generating code for file Conformer.h... Generating code for file ConnectivityDescriptors.h... Generating code for file Contrib.h... Generating code for file Contribs.h... Generating code for file Contribs.h... Generating code for file CorrMatGenerator.h... Generating code for file Crippen.h... Generating code for file Data3Ddescriptors.h... Generating code for file DatastructsException.h... Generating code for file DebugTrace.h... Generating code for file DepictUtils.h... Generating code for file details.h... Generating code for file details.h... Generating code for file Dict.h... Generating code for file DiscreteDistMat.h... Generating code for file DiscreteValueVect.h... Generating code for file DistanceConstraint.h... Generating code for file DistanceConstraint.h... Generating code for file DistGeomUtils.h... Generating code for file DistPicker.h... Generating code for file DistViolationContrib.h... Generating code for file DuplicatedSeedCache.h... Generating code for file EEM.h... Generating code for file EmbeddedFrag.h... Generating code for file Embedder.h... Generating code for file Enumerate.h... Generating code for file EnumerateBase.h... Generating code for file EnumerateTypes.h... Generating code for file EnumerationPickler.h... Generating code for file EnumerationStrategyBase.h... Generating code for file EqualityQuery.h... Generating code for file EvenSamplePairs.h... Generating code for file Exceptions.h... Generating code for file ExplicitBitVect.h... Generating code for file export.h... Generating code for file Feature.h... Generating code for file FeatureParser.h... Generating code for file FileParseException.h... Generating code for file FileParsers.h... Generating code for file FileParserUtils.h... Generating code for file FilterCatalog.h... Generating code for file FilterCatalogEntry.h... Generating code for file FilterMatcherBase.h... Generating code for file FilterMatchers.h... Generating code for file Filters.h... Generating code for file FingerprintGenerator.h... Generating code for file Fingerprints.h... Generating code for file FingerprintUtil.h... Generating code for file FMCS.h... Generating code for file ForceField.h... Generating code for file FourthDimContrib.h... Generating code for file FPBReader.h... Generating code for file FragCatalogEntry.h... Generating code for file FragCatalogUtils.h... Generating code for file FragCatGenerator.h... Generating code for file FragCatParams.h... Generating code for file FragFPGenerator.h... Generating code for file Fragment.h... Generating code for file FragmentCatalogEntry.h... Generating code for file FragmentCatalogParams.h... Generating code for file FragmentCatalogUtils.h... Generating code for file FreeChemicalFeature.h... Generating code for file FunctionalGroupHierarchy.h... Generating code for file GasteigerCharges.h... Generating code for file GasteigerParams.h... Generating code for file GETAWAY.h... Generating code for file Graph.h... Generating code for file GraphMol.h... Generating code for file GreaterEqualQuery.h... Generating code for file GreaterQuery.h... Generating code for file Grid3D.h... Generating code for file GridUtils.h... Generating code for file hanoiSort.h... Generating code for file HierarchicalClusterPicker.h... Generating code for file import_array.h... Generating code for file InfoBitRanker.h... Generating code for file InfoGainFuncs.h... Generating code for file Invariant.h... Generating code for file Inversion.h... Generating code for file iterator_next.h... Generating code for file LessEqualQuery.h... Generating code for file LessQuery.h... Generating code for file Lipinski.h... Generating code for file LocaleSwitcher.h... Generating code for file MACCS.h... Generating code for file MatchTable.h... Generating code for file Matrix.h... Generating code for file MaximumCommonSubgraph.h... Generating code for file MaxMinPicker.h... Generating code for file Metal.h... Generating code for file MetricFuncs.h... Generating code for file MetricMatrixCalc.h... Generating code for file MMFF.h... Generating code for file MMPA.h... Generating code for file MolBundle.h... Generating code for file MolCatalog.h... Generating code for file MolCatalogEntry.h... Generating code for file MolCatalogParams.h... Generating code for file MolChemicalFeature.h... Generating code for file MolChemicalFeatureDef.h... Generating code for file MolChemicalFeatureFactory.h... Generating code for file MolData3Ddescriptors.h... Generating code for file MolDescriptors.h... Generating code for file MolDescriptors3D.h... Generating code for file MolDraw2D.h... Generating code for file MolDraw2DCairo.h... Generating code for file MolDraw2DDetails.h... Generating code for file MolDraw2DQt.h... Generating code for file MolDraw2DSVG.h... Generating code for file MolDraw2DUtils.h... Generating code for file MolDraw2Dwx.h... Generating code for file MolFileStereochem.h... Generating code for file MolFragmenter.h... Generating code for file MolHash.h... Generating code for file MolInterchange.h... Generating code for file MolOps.h... Generating code for file MolPickler.h... Generating code for file MolStandardize.h... Generating code for file MolSupplier.h... Generating code for file MolSurf.h... Generating code for file MolTransforms.h... Generating code for file MolWriters.h... Generating code for file MonomerInfo.h... Generating code for file MorganFingerprints.h... Generating code for file MorganGenerator.h... Generating code for file MORSE.h... Generating code for file MQN.h... Generating code for file MultiFPBReader.h... Generating code for file MultiMolDraw2D.h... Generating code for file new_canon.h... Generating code for file Nonbonded.h... Generating code for file Nonbonded.h... Generating code for file Normalize.h... Generating code for file O3AAlignMolecules.h... Generating code for file OopBend.h... Generating code for file OrQuery.h... Generating code for file Params.h... Generating code for file Params.h... Generating code for file Pattern.h... Generating code for file PBF.h... Generating code for file PeriodicTable.h... Generating code for file PMI.h... Generating code for file point.h... Generating code for file PositionConstraint.h... Generating code for file PositionConstraint.h... Generating code for file PowerEigenSolver.h... Generating code for file PreprocessRxn.h... Generating code for file primes.h... Generating code for file Property.h... Generating code for file ProximityBonds.h... Generating code for file pyint_api.h... Generating code for file PySequenceHolder.h... Generating code for file python.h... Generating code for file python_streambuf.h... Generating code for file Query.h... Generating code for file QueryAtom.h... Generating code for file QueryBond.h... Generating code for file QueryObjects.h... Generating code for file QueryOps.h... Generating code for file RandomSample.h... Generating code for file RandomSampleAllBBs.h... Generating code for file RangeQuery.h... Generating code for file Ranking.h... Generating code for file RDAny.h... Generating code for file RDConfig.h... Generating code for file RDDepictor.h... Generating code for file RDF.h... Generating code for file RDKitBase.h... Generating code for file RDKitFPGenerator.h... Generating code for file RDKitQueries.h... Generating code for file RDLog.h... Generating code for file RDProps.h... Generating code for file RDThreads.h... Generating code for file RDValue-doublemagic.h... Generating code for file RDValue-taggedunion.h... Generating code for file RDValue.h... Generating code for file Reaction.h... Generating code for file ReactionFingerprints.h... Generating code for file ReactionParser.h... Generating code for file ReactionPickler.h... Generating code for file ReactionRunner.h... Generating code for file ReactionUtils.h... Generating code for file ReCharge.h... Generating code for file ReducedGraphs.h... Generating code for file RegisterDescriptor.h... Generating code for file Resonance.h... Generating code for file RGroupDecomp.h... Generating code for file RingInfo.h... Generating code for file RingMatchTableSet.h... Generating code for file Rings.h... Generating code for file ROMol.h... Generating code for file RWMol.h... Generating code for file SanitException.h... Generating code for file SanitizeRxn.h... Generating code for file Seed.h... Generating code for file SeedSet.h... Generating code for file SequenceParsers.h... Generating code for file SequenceWriters.h... Generating code for file SetQuery./<>/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h:174: warning: found at different nesting level (7) than expected (4) /<>/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h:175: warning: end of comment block while expecting command h... Generating code for file ShapeEncoder.h... Generating code for file ShapeUtils.h... Generating code for file SLNAttribs.h... Generating code for file SLNParse.h... Generating code for file SLNParseOps.h... Generating code for file SmartsWrite.h... Generating code for file SmilesParse.h... Generating code for file SmilesParseOps.h... Generating code for file SmilesWrite.h... Generating code for file Snapshot.h... Generating code for file SparseBitVect.h... Generating code for file SparseIntVect.h... Generating code for file SquareMatrix.h... Generating code for file Stereo.h... Generating code for file StereoGroup.h... Generating code for file StreamOps.h... Generating code for file StretchBend.h... Generating code for file StripSmallFragments.h... Generating code for file StructChecker.h... Generating code for file StructCheckerOptions.h... Generating code for file Subgraphs.h... Generating code for file SubgraphUtils.h... Generating code for file SubstructLibrary.h... Generating code for file SubstructMatch.h... Generating code for file SubstructMatchCustom.h... Generating code for file SubstructureCache.h... Generating code for file SubstructUtils.h... Generating code for file SymmMatrix.h... Generating code for file Target.h... Generating code for file TargetMatch.h... Generating code for file Tautomer.h... Generating code for file Tautomer.h... Generating code for file TautomerCatalogEntry.h... Generating code for file TautomerCatalogParams.h... Generating code for file TautomerCatalogUtils.h... Generating code for file TopologicalTorsionGenerator.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAngleM6.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionPreferences.h... Generating code for file Trajectory.h... Generating code for file Transform.h... Generating code for file Transform2D.h... Generating code for file Transform3D.h... Generating code for file TransformCatalogEntry.h... Generating code for file TransformCatalogParams.h... Generating code for file TransformCatalogUtils.h... Generating code for file TriangleSmooth.h... Generating code for file types.h... Generating code for file UFF.h... Generating code for file UniformGrid3D.h... Generating code for file USRDescriptor.h... Generating code for file Utilites.h... Generating code for file Utils.h... Generating code for file utils.h... Generating code for file Validate.h... Generating code for file Vector.h... Generating code for file versions.h... Generating code for file WHIM.h... Generating code for file XOrQuery.h... Generating file documentation... Generating docs for file AcidBaseCatalogEntry.h... Generating docs for file AcidBaseCatalogParams.h... Generating docs for file AcidBaseCatalogUtils.h... Generating docs for file AlignMolecules.h... Generating docs for file AlignPoints.h... Generating docs for file AndQuery.h... Generating docs for file AngleBend.h... Generating docs for file AngleBend.h... Generating docs for file AngleConstraint.h... Generating docs for file AngleConstraint.h... Generating docs for file Atom.h... Generating docs for file atomic_data.h... Generating docs for file AtomIterators.h... Generating docs for file AtomPairGenerator.h... Generating docs for file AtomPairs.h... Generating docs for file AtomTyper.h... Generating docs for file AtomTyper.h... Generating docs for file AUTOCORR2D.h... Generating docs for file AUTOCORR3D.h... Generating docs for file BadFileException.h... Generating docs for file base64.h... Generating docs for file BFGSOpt.h... Generating docs for file BitOps.h... Generating docs for file BitVect.h... Generating docs for file BitVects.h... Generating docs for file BitVectUtils.h... Generating docs for file Bond.h... Generating docs for file BondIterators.h... Generating docs for file BondStretch.h... Generating docs for file BondStretch.h... Generating docs for file boost_numpy.h... Generating docs for file BoostEndInclude.h... Generating docs for file BoostStartInclude.h... Generating docs for file BoundsMatrix.h... Generating docs for file BoundsMatrixBuilder.h... Generating docs for file Builder.h... Generating docs for file Builder.h... Generating docs for file Canon.h... Generating docs for file CartesianProduct.h... Generating docs for file Catalog.h... Generating docs for file CatalogEntry.h... Generating docs for file CatalogParams.h... Generating docs for file Charge.h... Generating docs for file ChemicalFeature.h... Generating docs for file ChemTransforms.h... Generating docs for file Chirality.h... Generating docs for file ChiralSet.h... Generating docs for file ChiralViolationContrib.h... Generating docs for file Composition2N.h... Generating docs for file Conformer.h... Generating docs for file ConnectivityDescriptors.h... Generating docs for file Contrib.h... Generating docs for file Contribs.h... Generating docs for file Contribs.h... Generating docs for file CorrMatGenerator.h... Generating docs for file Crippen.h... Generating docs for file Data3Ddescriptors.h... Generating docs for file DatastructsException.h... Generating docs for file DebugTrace.h... Generating docs for file DepictUtils.h... Generating docs for file details.h... Generating docs for file details.h... Generating docs for file Dict.h... Generating docs for file DiscreteDistMat.h... Generating docs for file DiscreteValueVect.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistGeomUtils.h... Generating docs for file DistPicker.h... Generating docs for file DistViolationContrib.h... Generating docs for file DuplicatedSeedCache.h... Generating docs for file EEM.h... Generating docs for file EmbeddedFrag.h... Generating docs for file Embedder.h... Generating docs for file Enumerate.h... Generating docs for file EnumerateBase.h... Generating docs for file EnumerateTypes.h... Generating docs for file EnumerationPickler.h... Generating docs for file EnumerationStrategyBase.h... Generating docs for file EqualityQuery.h... Generating docs for file EvenSamplePairs.h... Generating docs for file Exceptions.h... Generating docs for file ExplicitBitVect.h... Generating docs for file export.h... Generating docs for file Feature.h... Generating docs for file FeatureParser.h... Generating docs for file FileParseException.h... Generating docs for file FileParsers.h... Generating docs for file FileParserUtils.h... Generating docs for file FilterCatalog.h... Generating docs for file FilterCatalogEntry.h... Generating docs for file FilterMatcherBase.h... Generating docs for file FilterMatchers.h... Generating docs for file Filters.h... Generating docs for file FingerprintGenerator.h... Generating docs for file Fingerprints.h... Generating docs for file FingerprintUtil.h... Generating docs for file FMCS.h... Generating docs for file ForceField.h... Generating docs for file FourthDimContrib.h... Generating docs for file FPBReader.h... Generating docs for file FragCatalogEntry.h... Generating docs for file FragCatalogUtils.h... Generating docs for file FragCatGenerator.h... Generating docs for file FragCatParams.h... Generating docs for file FragFPGenerator.h... Generating docs for file Fragment.h... Generating docs for file FragmentCatalogEntry.h... Generating docs for file FragmentCatalogParams.h... Generating docs for file FragmentCatalogUtils.h... Generating docs for file FreeChemicalFeature.h... Generating docs for file FunctionalGroupHierarchy.h... Generating docs for file GasteigerCharges.h... Generating docs for file GasteigerParams.h... Generating docs for file GETAWAY.h... Generating docs for file Graph.h... Generating docs for file GraphMol.h... Generating docs for file GreaterEqualQuery.h... Generating docs for file GreaterQuery.h... Generating docs for file Grid3D.h... Generating docs for file GridUtils.h... Generating docs for file hanoiSort.h... Generating docs for file HierarchicalClusterPicker.h... Generating docs for file import_array.h... Generating docs for file InfoBitRanker.h... Generating docs for file In/<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' foGainFuncs.h... Generating docs for file Invariant.h... Generating docs for file Inversion.h... Generating docs for file iterator_next.h... Generating docs for file LessEqualQuery.h... Generating docs for file LessQuery.h... Generating docs for file Lipinski.h... Generating docs for file LocaleSwitcher.h... Generating docs for file MACCS.h... Generating docs for file MatchTable.h... Generating docs for file Matrix.h... Generating docs for file MaximumCommonSubgraph.h... Generating docs for file MaxMinPicker.h... Generating docs for file Metal.h... Generating docs for file MetricFuncs.h... Generating docs for file MetricMatrixCalc.h... Generating docs for file MMFF.h... Generating docs for file MMPA.h... Generating docs for file MolBundle.h... Generating docs for file MolCatalog.h... Generating docs for file MolCatalogEntry.h... Generating docs for file MolCatalogParams.h... Generating docs for file MolChemicalFeature.h... Generating docs for file MolChemicalFeatureDef.h... Generating docs for file MolChemicalFeatureFactory.h... Generating docs for file MolData3Ddescriptors.h... Generating docs for file MolDescriptors.h... Generating docs for file MolDescriptors3D.h... Generating docs for file MolDraw2D.h... Generating docs for file MolDraw2DCairo.h... Generating docs for file MolDraw2DDetails.h... Generating docs for file MolDraw2DQt.h... Generating docs for file MolDraw2DSVG.h... Generating docs for file MolDraw2DUtils.h... Generating docs for file MolDraw2Dwx.h... Generating docs for file MolFileStereochem.h... Generating docs for file MolFragmenter.h... Generating docs for file MolHash.h... Generating docs for file MolInterchange.h... Generating docs for file MolOps.h... Generating docs for file MolPickler.h... Generating docs for file MolStandardize.h... Generating docs for file MolSupplier.h... Generating docs for file MolSurf.h... Generating docs for file MolTransforms.h... Generating docs for file MolWriters.h... Generating docs for file MonomerInfo.h... Generating docs for file MorganFingerprints.h... Generating docs for file MorganGenerator.h... Generating docs for file MORSE.h... Generating docs for file MQN.h... Generating docs for file MultiFPBReader.h... Generating docs for file MultiMolDraw2D.h... Generating docs for file new_canon.h... Generating docs for file Nonbonded.h... Generating docs for file Nonbonded.h... Generating docs for file Normalize.h... Generating docs for file O3AAlignMolecules.h... Generating docs for file OopBend.h... Generating docs for file OrQuery.h... Generating docs for file Params.h... Generating docs for file Params.h... Generating docs for file Pattern.h... Generating docs for file PBF.h... Generating docs for file PeriodicTable.h... Generating docs for file PMI.h... Generating docs for file point.h... Generating docs for file PositionConstraint.h... Generating docs for file PositionConstraint.h... Generating docs for file PowerEigenSolver.h... Generating docs for file PreprocessRxn.h... Generating docs for file primes.h... Generating docs for file Property.h... Generating docs for file ProximityBonds.h... Generating docs for file pyint_api.h... Generating docs for file PySequenceHolder.h... Generating docs for file python.h... Generating docs for file python_streambuf.h... Generating docs for file Query.h... Generating docs for file QueryAtom.h... Generating docs for file QueryBond.h... Generating docs for file QueryObjects.h... Generating docs for file QueryOps.h... Generating docs for file RandomSample.h... Generating docs for file RandomSampleAllBBs.h... Generating docs for file RangeQuery.h... Generating docs for file Ranking.h... Generating docs for file RDAny.h... Generating docs for file RDConfig.h... Generating docs for file RDDepictor.h... Generating docs for file RDF.h... Generating docs for file RDKitBase.h... Generating docs for file RDKitFPGenerator.h... Generating docs for file RDKitQueries.h... Generating docs for file RDLog.h... Generating docs for file RDProps.h... Generating docs for file RDThreads.h... Generating docs for file RDValue-doublemagic.h... Generating docs for file RDValue-taggedunion.h... Generating docs for file RDValue.h... Generating docs for file Reaction.h... Generating docs for file ReactionFingerprints.h... Generating docs for file ReactionParser.h... Generating docs for file ReactionPickler.h... Generating docs for file ReactionRunner.h... Generating docs for file ReactionUtils.h... Generating docs for file ReCharge.h... Generating docs for file ReducedGraphs.h... Generating docs for file RegisterDescriptor.h... Generating docs for file Resonance.h... Generating docs for file RGroupDecomp.h... Generating docs for file RingInfo.h... Generating docs for file RingMatchTableSet.h... Generating docs for file Rings.h... Generating docs for file ROMol.h... Generating docs for file RWMol.h... Generating docs for file SanitException.h... Generating docs for file SanitizeRxn.h... Generating docs for file Seed.h... Generating docs for file SeedSet.h... Generating docs for file SequenceParsers.h... Generating docs for file SequenceWriters.h... Generating docs for file SetQuery.h... Generating docs for file ShapeEncoder.h... Generating docs for file ShapeUtils.h... Generating docs for file SLNAttribs.h... Generating docs for file SLNParse.h... Generating docs for file SLNParseOps.h... Generating docs for file SmartsWrite.h... Generating docs for file SmilesParse.h... Generating docs for file SmilesParseOps.h... Generating docs for file SmilesWrite.h... Generating docs for file Snapshot.h... Generating docs for file SparseBitVect.h... Generating docs for file SparseIntVect.h... Generating docs for file SquareMatrix.h... Generating docs for file Stereo.h... Generating docs for file StereoGroup.h... Generating docs for file StreamOps.h... Generating docs for file StretchBend.h... Generating docs for file StripSmallFragments.h... Generating docs for file StructChecker.h... Generating docs for file StructCheckerOptions.h... Generating docs for file Subgraphs.h... Generating docs for file SubgraphUtils.h... Generating docs for file SubstructLibrary.h... Generating docs for file SubstructMatch.h... Generating docs for file SubstructMatchCustom.h... Generating docs for file SubstructureCache.h... Generating docs for file SubstructUtils.h... Generating docs for file SymmMatrix.h... Generating docs for file Target.h... Generating docs for file TargetMatch.h... Generating docs for file Tautomer.h... Generating docs for file Tautomer.h... Generating docs for file TautomerCatalogEntry.h... Generating docs for file TautomerCatalogParams.h... Generating docs for file TautomerCatalogUtils.h... Generating docs for file TopologicalTorsionGenerator.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngleM6.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionPreferences.h... Generating docs for file Trajectory.h... Generating docs for file Transform.h... Generating docs for file Transform2D.h... Generating docs for file Transform3D.h... Generating docs for file TransformCatalogEntry.h... Generating docs for file TransformCatalogParams.h... Generating docs for file TransformCatalogUtils.h... Generating docs for file TriangleSmooth.h... Generating docs for file types.h... Generating docs for file UFF.h... Generating docs for file UniformGrid3D.h... Generating docs for file USRDescriptor.h... Generating docs for file Utilites.h... Generating docs for file Utils.h... Generating docs for file utils.h... Generating docs for file Validate.h... Generating docs for file Vector.h... Generating docs for file versions.h... Generating docs for file WHIM.h... Generating docs for file XOrQuery.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound BitVect... Generating docs for compound Data3Ddescriptors... Generating docs for compound DatastructsException... Generating docs for compound ExplicitBitVect... Generating docs for compound IndexErrorException... Generating docs/<>/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:133: warning: The following parameters of ForceFields::ForceField::minimize(unsigned int snapshotFreq, RDKit::SnapshotVect *snapshotVect, unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) are not documented: parameter 'snapshotFreq' parameter 'snapshotVect' /<>/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:139: warning: argument 'snapshotFreq' of command @param is not found in the argument list of ForceFields::ForceField::minimize(unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) /<>/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:139: warning: argument 'snapshotVect' of command @param is not found in the argument list of ForceFields::ForceField::minimize(unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h:31: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h:40: warning: The following parameters of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) are not documented: parameter 'mmffAngleParams' parameter 'mmffPropParamsCentralAtom' /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:27: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:27: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:36: warning: The following parameters of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'bondType' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'end1Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'end2Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:36: warning: The following parameters of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) are not documented: parameter 'mmffBondParams' /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h:59: warning: The following parameters of ForceFields::MMFF::EleContrib::EleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, double chargeTerm, boost::uint8_t dielModel, bool is1_4) are not documented: parameter 'chargeTerm' parameter 'dielModel' parameter 'is1_4' /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:161: warning: argument 'mmffArom' of command @param is not found in the argument list of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:177: warning: The following parameters of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) are not documented: parameter 'aromatic_types' /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:1086: warning: The following parameters of ForceFields::MMFF::MMFFOopCollection::getMMFFOop(const bool isMMFFs=false, const std::string &mmffOop="") are not documented: parameter 'isMMFFs' /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:1215: warning: The following parameters of ForceFields::MMFF::MMFFTorCollection::getMMFFTor(const bool isMMFFs, const std::string &mmffTor="") are not documented: parameter 'isMMFFs' for compound KeyErrorException... Generating docs for compound MolData3Ddescriptors... Generating docs for compound PySequenceHolder... Generating docs for compound SparseBitVect... Generating docs for compound ValueErrorException... Generating namespace index... Generating docs for namespace BFGSOpt Generating docs for namespace boost Generating docs for namespace boost::logging Generating docs for compound boost::logging::rdLogger... Generating docs for namespace boost_adaptbx Generating docs for namespace boost_adaptbx::python Generating docs for compound boost_adaptbx::python::ostream... Generating docs for compound boost_adaptbx::python::streambuf... Generating docs for nested compound boost_adaptbx::python::streambuf::istream... Generating docs for nested compound boost_adaptbx::python::streambuf::ostream... Generating docs for compound boost_adaptbx::python::streambuf_capsule... Generating docs for namespace ChemicalFeatures Generating docs for compound ChemicalFeatures::ChemicalFeature... Generating docs for compound ChemicalFeatures::FreeChemicalFeature... Generating docs for namespace DistGeom Generating docs for compound DistGeom::BoundsMatrix... Generating docs for compound DistGeom::ChiralSet... Generating docs for compound DistGeom::ChiralViolationContrib... Generating docs for compound DistGeom::DistViolationContrib... Generating docs for compound DistGeom::FourthDimContrib... Generating docs for namespace ForceFields Generating docs for compound ForceFields::ForceField... Generating docs for compound ForceFields::ForceFieldContrib... Generating docs for namespace ForceFields::CrystalFF Generating docs for compound ForceFields::CrystalFF::TorsionAngleContribM6... Generating docs for namespace ForceFields::MMFF Generating docs for compound ForceFields::MMFF::AngleBendContrib... Generating docs for compound ForceFields::MMFF::AngleConstraintContrib... Generating docs for compound ForceFields::MMFF::BondStretchContrib... Generating docs for compound ForceFields::MMFF::DistanceConstraintContrib... Generating docs for compound ForceFields::MMFF::EleContrib... Generating docs for compound ForceFields::MMFF::MMFFAngle... Generating docs for compound ForceFields::MMFF::MMFFAngleCollection... Generating docs for compound ForceFields::MMFF::MMFFAromCollection... Generating docs for compound ForceFields::MMFF::MMFFBndkCollection... Generating docs for compound ForceFields::MMFF::MMFFBond... Generating docs for compound ForceFields::MMFF::MMFFBondCollection... Generating docs for compound ForceFields::MMFF::MMFFChg... Generating docs for compound ForceFields::MMFF::MMFFChgCollection... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEle... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEleCollection... Generating docs for compound ForceFields::MMFF::MMFFDef... Generating docs for compound ForceFields::MMFF::MMFFDefCollection... Generating docs for compound ForceFields::MMFF::MMFFDfsbCollection... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurie... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurieCollection... Generating docs for compound ForceFields::MMFF::MMFFOop... Generating docs for compound ForceFields::MMFF::MMFFOopCollection... Generating docs for compound ForceFields::MMFF::MMFFPBCI... Generating docs for compound ForceFields::MMFF::MMFFPBCICollection... Generating docs for compound ForceFields::MMFF::MMFFProp... Generating docs for compound ForceFields::MMFF::MMFFPropCollection... Generating docs for compound ForceFields::MMFF::MMFFStbn... Generating docs for compound ForceFields::MMFF::MMFFStbnCollection... Generating docs for compound ForceFields::MMFF::MMFFTor... Generating docs for compound ForceFields::MMFF::MMFFTorCollection... Generating docs for compound ForceFields::MMFF::MMFFVdW... Generating docs for compound ForceFields::MMFF::MMFFVdWCollection... Generating docs for compound ForceFields::MMFF::MMFFVdWRijstarEps... Generating docs for compound ForceFields::MMFF::OopBendContrib... Generating docs for compound ForceFields::MMFF::Posi/<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h:28: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::MMFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h:32: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h:41: warning: The following parameters of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) are not documented: parameter 'mmffStbnParams' parameter 'mmffAngleParams' parameter 'mmffBondParams1' parameter 'mmffBondParams2' /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h:34: warning: argument 'torsionType' of command @param is not found in the argument list of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h:45: warning: The following parameters of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) are not documented: parameter 'mmffTorParams' /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h:35: warning: The following parameters of ForceFields::MMFF::VdWContrib::VdWContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, const MMFFVdWRijstarEps *mmffVdWConstants) are not documented: parameter 'mmffVdWConstants' /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:27: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:27: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:36: warning: The following parameters of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h:39: warning: The following parameters of ForceFields::UFF::InversionContrib::InversionContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, int at2AtomicNum, bool isCBoundToO, double oobForceScalingFactor=1.0) are not documented: parameter 'oobForceScalingFactor' /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h:28: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::UFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:73: warning: The following parameters of RDDepict::compute2DCoords(RDKit::ROMol &mol, const RDGeom::INT_POINT2D_MAP *coordMap=0, bool canonOrient=false, bool clearConfs=true, unsigned int nFlipsPerSample=0, unsigned int nSamples=0, int sampleSeed=0, bool permuteDeg4Nodes=false, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:130: warning: The following parameters of RDDepict::compute2DCoordsMimicDistMat(RDKit::ROMol &mol, const DOUBLE_SMART_PTR *dmat=0, bool canonOrient=true, bool clearConfs=true, double weightDistMat=0.5, unsigned int nFlipsPerSample=3, unsigned int nSamples=100, int sampleSeed=25, bool permuteDeg4Nodes=true, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:162: warning: The following parameters of RDDepict::generateDepictionMatching2DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=static_cast< RDKit::ROMol * >(0), bool acceptFailure=false, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:170: warning: argument 'refPattern' of command @param is not found in the argument list of RDDepict::generateDepictionMatching3DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=0, bool acceptFailure=false, bool forceRDKit=false) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:189: warning: The following parameters of RDDepict::generateDepictionMatching3DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=0, bool acceptFailure=false, bool forceRDKit=false) are not documented: parameter 'referencePattern' parameter 'forceRDKit' tionConstraintContrib... Generating docs for compound ForceFields::MMFF::StretchBendContrib... Generating docs for compound ForceFields::MMFF::TorsionAngleContrib... Generating docs for compound ForceFields::MMFF::TorsionConstraintContrib... Generating docs for compound ForceFields::MMFF::VdWContrib... Generating docs for namespace ForceFields::MMFF::Utils Generating docs for namespace ForceFields::UFF Generating docs for compound ForceFields::UFF::AngleBendContrib... Generating docs for compound ForceFields::UFF::AngleConstraintContrib... Generating docs for compound ForceFields::UFF::AtomicParams... Generating docs for compound ForceFields::UFF::BondStretchContrib... Generating docs for compound ForceFields::UFF::DistanceConstraintContrib... Generating docs for compound ForceFields::UFF::InversionContrib... Generating docs for compound ForceFields::UFF::ParamCollection... Generating docs for compound ForceFields::UFF::PositionConstraintContrib... Generating docs for compound ForceFields::UFF::TorsionAngleContrib... Generating docs for compound ForceFields::UFF::TorsionConstraintContrib... Generating docs for compound ForceFields::UFF::UFFAngle... Generating docs for compound ForceFields::UFF::UFFBond... Generating docs for compound ForceFields::UFF::UFFInv... Generating docs for compound ForceFields::UFF::UFFTor... Generating docs for compound ForceFields::UFF::UFFVdW... Generating docs for compound ForceFields::UFF::vdWContrib... Generating docs for namespace ForceFields::UFF::Params Generating docs for namespace ForceFields::UFF::Utils Generating docs for namespace Invar Generating docs for compound Invar::Invariant... Generating docs for namespace MolTransforms Generating docs for namespace Queries Generating docs for compound Queries::AndQuery... Generating docs for compound Queries::EqualityQuery... Generating docs for compound Queries::GreaterEqualQuery... Generating docs for compound Queries::GreaterQuery... Generating docs for compound Queries::Int2Type... Generating docs for compound Queries::LessEqualQuery... Generating docs for compound Queries::LessQuery... Generating docs for compound Queries::OrQuery... Generating docs for compound Queries::Query... Generating docs for compound Queries::RangeQuery... Generating docs for compound Queries::SetQuery... Generating docs for compound Queries::XOrQuery... Generating docs for namespace Rankers Generating docs for compound Rankers::argless... Generating docs for compound Rankers::pairGreater... Generating docs for compound Rankers::pairLess... Generating docs for namespace RDCatalog Generating docs for compound RDCatalog::Catalog... Generating docs for compound RDCatalog::CatalogEntry... Generating docs for compound RDCatalog::CatalogParams... Generating docs for compound RDCatalog::HierarchCatalog... Generating docs for nested compound RDCatalog::HierarchCatalog::vertex_entry_t... Generating docs for compound RDCatalog::LinearCatalog... Generating docs for namespace RDDataManip Generating docs for compound RDDataManip::MetricMatrixCalc... Generating docs for namespace RDDepict Generating docs for compound RDDepict::DepictException... Generating docs for compound RDDepict::EmbeddedAtom... Generating docs for compound RDDepict::EmbeddedFrag... Generating docs for compound RDDepict::gtIIPair... Generating docs for namespace RDFeatures Generating docs for compound RDFeatures::ExplicitFeature... Generating docs for compound RDFeatures::ImplicitFeature... Generating docs for namespace RDGeom Generating docs for compound RDGeom::Grid3D... Generating docs for compound RDGeom::GridException... Generating docs for compound RDGeom::Point... Generating docs for compound RDGeom::Point2D... Generating docs for compound RDGeom::Point3D... Generating docs for compound RDGeom::PointND... Generating docs for compound RDGeom::Transform2D... Generating docs for compound RDGeom::Transform3D... Generating docs for compound RDGeom::UniformGrid3D... Generating docs for namespace RDInfoTheory Generating docs for compound RDInfoTheory::BitCorrMatGenerator... Generating docs for compound R/<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h:94: warning: argument 'seq' of command @param is not found in the argument list of RDKit::HELMToMol(const char *helm, bool sanitize=true) /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h:99: warning: The following parameters of RDKit::HELMToMol(const char *helm, bool sanitize=true) are not documented: parameter 'helm' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:105: warning: The following parameters of RDKit::LayeredFingerprintMol(const ROMol &mol, unsigned int layerFlags=0xFFFFFFFF, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, std::vector< unsigned int > *atomCounts=0, ExplicitBitVect *setOnlyBits=0, bool branchedPaths=true, const std::vector< boost::uint32_t > *fromAtoms=0) are not documented: parameter 'fromAtoms' /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /<>/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h:267: warning: argument 'fName' of command @param is not found in the argument list of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h:278: warning: The following parameters of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) are not documented: parameter 'fname' /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h:71: warning: The following parameters of RDKit::MolToSmiles(const ROMol &mol, bool doIsomericSmiles=true, bool doKekule=false, int rootedAtAtom=-1, bool canonical=true, bool allBondsExplicit=false, bool allHsExplicit=false, bool doRandom=false) are not documented: parameter 'doRandom' /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'comment' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'smartsColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:26: warning: argument 'useBondOrders' of command @param is not found in the argument list of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:53: warning: The following parameters of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) are not documented: parameter 'useBondOrder' parameter 'bitInfo' /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:96: warning: The following parameters of RDKit::reduceProductToSideChains(const ROMOL_SPTR &product, bool addDummyAtoms=true) are not documented: parameter 'product' /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:111: warning: argument 'useChirality' of command @param is not found in the argument list of RDKit::replaceCore(const ROMol &mol, const ROMol &core, const MatchVectType &matchVect, bool replaceDummies=true, bool labelByIndex=false, bool requireDummyMatch=false) /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:64: warning: argument 'reactantTemplateIdx' of command @param is not found in the argument list of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:77: warning: The following parameters of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) are not documented: parameter 'rxn' parameter 'reactantIdx' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h:107: warning: The following parameters of RDKit::AtomEnvironment::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const=0 are not documented: parameter 'AdditionalOutput' /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h:207: warning: argument 'maxProducts' of command @param is not found in the argument list of RDKit::ChemicalReaction::runReactants(const MOL_SPTR_VECT reactants, unsigned int numProducts=1000) const /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h:221: warning: The following parameters of RDKit::ChemicalReaction::runReactants(const MOL_SPTR_VECT reactants, unsigned int numProducts=1000) const are not documented: parameter 'numProducts' /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:415: warning: argument 'matches' of command @param is not found in the argument list of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:415: warning: The following parameters of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:100: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:106: warning: The following parameters of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 are not documented: parameter 'matchVect' DInfoTheory::InfoBitRanker... Generating docs for namespace RDKit Generating docs for compound RDKit::AdditionalOutput... Generating docs for compound RDKit::AromaticAtomIterator_... Generating docs for compound RDKit::Atom... Generating docs for compound RDKit::AtomEnvironment... Generating docs for compound RDKit::AtomEnvironmentGenerator... Generating docs for compound RDKit::atomicData... Generating docs for compound RDKit::AtomInvariantsGenerator... Generating docs for compound RDKit::AtomIterator_... Generating docs for compound RDKit::AtomMonomerInfo... Generating docs for compound RDKit::AtomPDBResidueInfo... Generating docs for compound RDKit::AtomRingQuery... Generating docs for compound RDKit::BadFileException... Generating docs for compound RDKit::Bond... Generating docs for compound RDKit::BondInvariantsGenerator... Generating docs for compound RDKit::BondIterator_... Generating docs for compound RDKit::CachedMolHolder... Generating docs for compound RDKit::CachedSmilesMolHolder... Generating docs for compound RDKit::CachedTrustedSmilesMolHolder... Generating docs for compound RDKit::CartesianProductStrategy... Generating docs for compound RDKit::charptr_functor... Generating docs for compound RDKit::ChemicalReaction... Generating docs for compound RDKit::ChemicalReactionException... Generating docs for compound RDKit::ChemicalReactionParserException... Generating docs for compound RDKit::Conformer... Generating docs for compound RDKit::ConformerException... Generating docs for compound RDKit::ConstBondIterator_... Generating docs for compound RDKit::CXXAtomIterator... Generating docs for nested compound RDKit::CXXAtomIterator::CXXAtomIter... Generating docs for compound RDKit::CXXBondIterator... Generating docs for nested compound RDKit::CXXBondIterator::CXXBondIter... Generating docs for compound RDKit::Dict... Generating docs for nested compound RDKit::Dict::Pair... Generating docs for compound RDKit::DiscreteDistMat... Generating docs for compound RDKit::DiscreteValueVect... Generating docs for compound RDKit::EnumerateLibrary... Generating docs for compound RDKit::EnumerateLibraryBase... Generating docs for compound RDKit::EnumerationParams... Generating docs for compound RDKit::EnumerationStrategyBase... Generating docs for compound RDKit::EnumerationStrategyException... Generating docs for compound RDKit::EvenSamplePairsStrategy... Generating docs for compound RDKit::ExclusionList... Generating docs for compound RDKit::FeatureFileParseException... Generating docs for compound RDKit::FileParseException... Generating docs for compound RDKit::FilterCatalog... Generating docs for compound RDKit::FilterCatalogEntry... Generating docs for compound RDKit::FilterCatalogParams... Generating docs for compound RDKit::FilterData_t... Generating docs for compound RDKit::FilterHierarchyMatcher... Generating docs for compound RDKit::FilterMatch... Generating docs for compound RDKit::FilterMatcherBase... Generating docs for compound RDKit::FilterProperty_t... Generating docs for compound RDKit::FingerprintArguments... Generating docs for compound RDKit::FingerprintGenerator... Generating docs for compound RDKit::ForwardSDMolSupplier... Generating docs for compound RDKit::FPBReader... Generating docs for compound RDKit::FPHolderBase... Generating docs for compound RDKit::FragCatalogEntry... Generating docs for compound RDKit::FragCatGenerator... Generating docs for compound RDKit::FragCatParams... Generating docs for compound RDKit::FragFPGenerator... Generating docs for compound RDKit::GasteigerParams... Generating docs for compound RDKit::HasPropQuery... Generating docs for compound RDKit::HasPropWithValueQuery... Generating docs for compound RDKit::HasPropWithValueQuery< TargetPtr, std::string >... Generating docs for compound RDKit::HeteroatomIterator_... Generating docs for compound RDKit::larger_of... Generating docs for compound RDKit::ltDouble... Generating docs for compound RDKit::MatchingAtomIterator_... Generating docs for compound RDKit::MCSAtomCompareParameters... Generating docs for compound RDKit::MCSBo/<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:176: warning: The following parameters of RDKit::MolDraw2D::drawMolecule(const ROMol &mol, const std::string &legend, const std::vector< int > *highlight_atoms, const std::vector< int > *highlight_bonds, const std::map< int, DrawColour > *highlight_atom_map=NULL, const std::map< int, DrawColour > *highlight_bond_map=NULL, const std::map< int, double > *highlight_radii=NULL, int confId=-1) are not documented: parameter 'highlight_bonds' /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'highlight_atom_map' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'highlight_bond_map' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'confId' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:231: warning: The following parameters of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) are not documented: parameter 'highlight_bonds' parameter 'highlight_atom_maps' parameter 'highlight_bond_maps' parameter 'confIds' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h:56: warning: argument 'numThreads' of command @param is not found in the argument list of RDKit::ResonanceMolSupplier::ResonanceMolSupplier(ROMol &mol, unsigned int flags=0, unsigned int maxStructs=1000) /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:322: warning: argument 'matches' of command @param is not found in the argument list of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:322: warning: The following parameters of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'smilesColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'titleLine' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'sanitize' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h:103: warning: The following parameters of RDKit::AtomPair::AtomPairAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h:121: warning: The following parameters of RDKit::AtomPairs::getHashedAtomPairFingerprint(const ROMol &mol, unsigned int nBits=2048, unsigned int minLength=1, unsigned int maxLength=maxPathLen - 1, const std::vector< boost::uint32_t > *fromAtoms=0, const std::vector< boost::uint32_t > *ignoreAtoms=0, const std::vector< boost::uint32_t > *atomInvariants=0, bool includeChirality=false, bool use2D=true, int confId=-1) are not documented: parameter 'confId' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h:77: warning: The following parameters of RDKit::AtomPairs::getTopologicalTorsionCode(const std::vector< std::uint32_t > &atomCodes, bool includeChirality=false) are not documented: parameter 'includeChirality' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h:113: warning: The following parameters of RDKit::Canon::canonicalizeFragment(ROMol &mol, int atomIdx, std::vector< AtomColors > &colors, const std::vector< unsigned int > &ranks, MolStack &molStack, const boost::dynamic_bitset<> *bondsInPlay=0, const std::vector< std::string > *bondSymbols=0, bool doIsomericSmiles=false, bool doRandom=false) are not documented: parameter 'bondsInPlay' parameter 'bondSymbols' parameter 'doIsomericSmiles' parameter 'doRandom' ndCompareParameters... Generating docs for compound RDKit::MCSParameters... Generating docs for compound RDKit::MCSProgressData... Generating docs for compound RDKit::MCSResult... Generating docs for compound RDKit::MolBundle... Generating docs for compound RDKit::MolCatalogEntry... Generating docs for compound RDKit::MolCatalogParams... Generating docs for compound RDKit::MolChemicalFeature... Generating docs for compound RDKit::MolChemicalFeatureDef... Generating docs for compound RDKit::MolChemicalFeatureFactory... Generating docs for compound RDKit::MolDraw2D... Generating docs for compound RDKit::MolDraw2DCairo... Generating docs for compound RDKit::MolDraw2DQt... Generating docs for compound RDKit::MolDraw2DSVG... Generating docs for compound RDKit::MolDraw2Dwx... Generating docs for compound RDKit::MolDrawOptions... Generating docs for compound RDKit::MolHolder... Generating docs for compound RDKit::MolHolderBase... Generating docs for compound RDKit::MolPickler... Generating docs for compound RDKit::MolPicklerException... Generating docs for compound RDKit::MolSanitizeException... Generating docs for compound RDKit::MolSupplier... Generating docs for compound RDKit::MolWriter... Generating docs for compound RDKit::MultiFPBReader... Generating docs for compound RDKit::MultiMolDraw2D... Generating docs for compound RDKit::PatternHolder... Generating docs for compound RDKit::PDBMolSupplier... Generating docs for compound RDKit::PDBWriter... Generating docs for compound RDKit::PeriodicTable... Generating docs for compound RDKit::QueryAtom... Generating docs for compound RDKit::QueryAtomIterator_... Generating docs for compound RDKit::QueryBond... Generating docs for compound RDKit::RandomSampleAllBBsStrategy... Generating docs for compound RDKit::RandomSampleStrategy... Generating docs for compound RDKit::RDAny... Generating docs for compound RDKit::RDProps... Generating docs for compound RDKit::RDValue... Generating docs for compound RDKit::ReactionFingerprintParams... Generating docs for compound RDKit::ReactionPickler... Generating docs for compound RDKit::ReactionPicklerException... Generating docs for compound RDKit::RecursiveStructureQuery... Generating docs for compound RDKit::ResonanceMolSupplier... Generating docs for compound RDKit::RGroupDecomposition... Generating docs for compound RDKit::RGroupDecompositionParameters... Generating docs for compound RDKit::RingInfo... Generating docs for compound RDKit::ROMol... Generating docs for compound RDKit::RWMol... Generating docs for compound RDKit::RxnSanitizeException... Generating docs for compound RDKit::SDMolSupplier... Generating docs for compound RDKit::SDWriter... Generating docs for compound RDKit::SLNParseException... Generating docs for compound RDKit::SmartsMatcher... Generating docs for compound RDKit::SmilesMolSupplier... Generating docs for compound RDKit::SmilesParseException... Generating docs for compound RDKit::SmilesParserParams... Generating docs for compound RDKit::SmilesWriter... Generating docs for compound RDKit::Snapshot... Generating docs for compound RDKit::SparseIntVect... Generating docs for compound RDKit::StereoGroup... Generating docs for compound RDKit::SubstructLibrary... Generating docs for compound RDKit::TDTMolSupplier... Generating docs for compound RDKit::TDTWriter... Generating docs for compound RDKit::Trajectory... Generating docs for compound RDKit::UnimplementedFPException... Generating docs for namespace RDKit::AtomPair Generating docs for compound RDKit::AtomPair::AtomPairArguments... Generating docs for compound RDKit::AtomPair::AtomPairAtomEnv... Generating docs for compound RDKit::AtomPair::AtomPairAtomInvGenerator... Generating docs for compound RDKit::AtomPair::AtomPairEnvGenerator... Generating docs for namespace RDKit::AtomPairs Generating docs for namespace RDKit::Canon Generating docs for compound RDKit::Canon::AtomCompareFunctor... Generating docs for compound RDKit::Canon::bondholder... Generating docs for compound RDKit::Canon::canon_atom... Generating docs for compound RDKit::Canon::ChiralAtomCompareFunct/<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h:45: warning: argument 'strict' of command @param is not found in the argument list of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h:52: warning: The following parameters of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) are not documented: parameter 'useStrictDefinition' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h:79: warning: The following parameters of RDKit::Descriptors::USRCAT(const ROMol &mol, std::vector< double > &descriptor, std::vector< std::vector< unsigned int >> &atomIds, int confId=-1) are not documented: parameter 'atomIds' /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:86: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:86: warning: The following parameters of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:204: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:204: warning: The following parameters of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:148: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:148: warning: The following parameters of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h:36: warning: The following parameters of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int maxCuts=3, unsigned int maxCutBonds=20, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") are not documented: parameter 'pattern' /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h:57: warning: The following parameters of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int minCuts, unsigned int maxCuts, unsigned int maxCutBonds, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") are not documented: parameter 'pattern' /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h:645: warning: The following parameters of RDKit::MolOps::getAdjacencyMatrix(const ROMol &mol, bool useBO=false, int emptyVal=0, bool force=false, const char *propNamePrefix=0, const boost::dynamic_bitset<> *bondsToUse=0) are not documented: parameter 'bondsToUse' /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h:257: warning: The following parameters of RDKit::MolOps::mergeQueryHs(const ROMol &mol, bool mergeUnmappedOnly=false) are not documented: parameter 'mergeUnmappedOnly' or... Generating docs for compound RDKit::Canon::MolStackElem... Generating docs for compound RDKit::Canon::MolStackUnion... Generating docs for compound RDKit::Canon::SpecialChiralityAtomCompareFunctor... Generating docs for compound RDKit::Canon::SpecialSymmetryAtomCompareFunctor... Generating docs for namespace RDKit::common_properties Generating docs for namespace RDKit::constants Generating docs for namespace RDKit::Descriptors Generating docs for compound RDKit::Descriptors::CrippenParamCollection... Generating docs for compound RDKit::Descriptors::CrippenParams... Generating docs for compound RDKit::Descriptors::Properties... Generating docs for compound RDKit::Descriptors::PropertyFunctor... Generating docs for namespace RDKit::Descriptors::detail Generating docs for namespace RDKit::detail Generating docs for namespace RDKit::DGeomHelpers Generating docs for compound RDKit::DGeomHelpers::EmbedParameters... Generating docs for namespace RDKit::DTags Generating docs for namespace RDKit::EnumerationStrategyPickler Generating docs for namespace RDKit::EnumerationTypes Generating docs for namespace RDKit::FileParserUtils Generating docs for namespace RDKit::FilterMatchOps Generating docs for compound RDKit::FilterMatchOps::And... Generating docs for compound RDKit::FilterMatchOps::Not... Generating docs for compound RDKit::FilterMatchOps::Or... Generating docs for namespace RDKit::FMCS Generating docs for compound RDKit::FMCS::Composition2N... Generating docs for compound RDKit::FMCS::DuplicatedSeedCache... Generating docs for nested compound RDKit::FMCS::DuplicatedSeedCache::TKey... Generating docs for compound RDKit::FMCS::ExecStatistics... Generating docs for compound RDKit::FMCS::Graph... Generating docs for compound RDKit::FMCS::MaximumCommonSubgraph... Generating docs for compound RDKit::FMCS::MolFragment... Generating docs for compound RDKit::FMCS::NewBond... Generating docs for compound RDKit::FMCS::RingMatchTableSet... Generating docs for compound RDKit::FMCS::Seed... Generating docs for compound RDKit::FMCS::SeedSet... Generating docs for compound RDKit::FMCS::SubstructureCache... Generating docs for nested compound RDKit::FMCS::SubstructureCache::HashKey... Generating docs for nested compound RDKit::FMCS::SubstructureCache::KeyNumericMetrics... Generating docs for compound RDKit::FMCS::Target... Generating docs for compound RDKit::FMCS::TargetMatch... Generating docs for compound RDKit::FMCS::TArray2D... Generating docs for namespace RDKit::Local Generating docs for namespace RDKit::MACCSFingerprints Generating docs for namespace RDKit::MMFF Generating docs for compound RDKit::MMFF::MMFFAtomProperties... Generating docs for compound RDKit::MMFF::MMFFMolProperties... Generating docs for namespace RDKit::MMFF::Tools Generating docs for compound RDKit::MMFF::Tools::DefaultTorsionBondSmarts... Generating docs for namespace RDKit::MMPA Generating docs for namespace RDKit::MolAlign Generating docs for compound RDKit::MolAlign::LAP... Generating docs for compound RDKit::MolAlign::MolAlignException... Generating docs for compound RDKit::MolAlign::MolHistogram... Generating docs for compound RDKit::MolAlign::O3A... Generating docs for compound RDKit::MolAlign::O3AConstraint... Generating docs for compound RDKit::MolAlign::O3AConstraintVect... Generating docs for compound RDKit::MolAlign::O3AFuncData... Generating docs for compound RDKit::MolAlign::SDM... Generating docs for namespace RDKit::MolDraw2D_detail Generating docs for namespace RDKit::MolDraw2DUtils Generating docs for namespace RDKit::MolFragmenter Generating docs for compound RDKit::MolFragmenter::FragmenterBondType... Generating docs for namespace RDKit::MolHash Generating docs for compound RDKit::MolHash::HashSet... Generating docs for namespace RDKit::MolInterchange Generating docs for compound RDKit::MolInterchange::JSONParseParameters... Generating docs for namespace RDKit::MolOps Generating docs for compound RDKit::MolOps::AdjustQueryParameters... Generating docs for namespace RDKit::MolShapes Generating docs for namespace RDKit::MolStandardize Gen/<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:189: warning: argument 'OutputType' of command @param is not found in the argument list of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:189: warning: argument 'radiu' of command @param is not found in the argument list of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:228: warning: The following parameters of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) are not documented: parameter 'radius' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:151: warning: The following parameters of RDKit::MorganFingerprint::MorganAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h:152: warning: The following parameters of RDKit::MorganFingerprints::getHashedFingerprint(const ROMol &mol, unsigned int radius, unsigned int nBits=2048, std::vector< boost::uint32_t > *invariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, bool useChirality=false, bool useBondTypes=true, bool onlyNonzeroInvariants=false, BitInfoMap *atomsSettingBits=0) are not documented: parameter 'nBits' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:109: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::RDKitFP::getRDKitFPGenerator(const unsigned int minPath=1, const unsigned int maxPath=7, const bool useHs=true, const bool branchedPaths=true, const bool useBondOrder=true, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:133: warning: The following parameters of RDKit::RDKitFP::getRDKitFPGenerator(const unsigned int minPath=1, const unsigned int maxPath=7, const bool useHs=true, const bool branchedPaths=true, const bool useBondOrder=true, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) are not documented: parameter 'countSimulation' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:35: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::RDKitFP::RDKitFPArguments< OutputType >::RDKitFPArguments(unsigned int minPath, unsigned int maxPath, bool useHs, bool branchedPaths, bool useBondOrder, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:52: warning: The following parameters of RDKit::RDKitFP::RDKitFPArguments::RDKitFPArguments(unsigned int minPath, unsigned int maxPath, bool useHs, bool branchedPaths, bool useBondOrder, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) are not documented: parameter 'countSimulation' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:75: warning: The following parameters of RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h:34: warning: The following parameters of RDKit::ReducedGraphs::generateMolExtendedReducedGraph(const ROMol &mol, std::vector< boost::dynamic_bitset<> > *atomTypes=0) are not documented: parameter 'atomTypes' /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h:124: warning: argument 'operationThatFailed' of command @param is not found in the argument list of RDKit::RxnOps::sanitizeRxn(ChemicalReaction &rxn, unsigned int &operationsThatFailed, unsigned int sanitizeOps=SANITIZE_ALL, const MolOps::AdjustQueryParameters ¶ms=DefaultRxnAdjustParams()) /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h:155: warning: The following parameters of RDKit::RxnOps::sanitizeRxn(ChemicalReaction &rxn, unsigned int &operationsThatFailed, unsigned int sanitizeOps=SANITIZE_ALL, const MolOps::AdjustQueryParameters ¶ms=DefaultRxnAdjustParams()) are not documented: parameter 'operationsThatFailed' parameter 'params' erating docs for compound RDKit::MolStandardize::AcidBaseCatalogEntry... Generating docs for compound RDKit::MolStandardize::AcidBaseCatalogParams... Generating docs for compound RDKit::MolStandardize::AllowedAtomsValidation... Generating docs for compound RDKit::MolStandardize::ChargeCorrection... Generating docs for compound RDKit::MolStandardize::CleanupParameters... Generating docs for compound RDKit::MolStandardize::DisallowedAtomsValidation... Generating docs for compound RDKit::MolStandardize::FragmentCatalogEntry... Generating docs for compound RDKit::MolStandardize::FragmentCatalogParams... Generating docs for compound RDKit::MolStandardize::FragmentRemover... Generating docs for compound RDKit::MolStandardize::FragmentValidation... Generating docs for compound RDKit::MolStandardize::IsotopeValidation... Generating docs for compound RDKit::MolStandardize::LargestFragmentChooser... Generating docs for nested compound RDKit::MolStandardize::LargestFragmentChooser::Largest... Generating docs for compound RDKit::MolStandardize::MetalDisconnector... Generating docs for compound RDKit::MolStandardize::MolVSValidation... Generating docs for compound RDKit::MolStandardize::MolVSValidations... Generating docs for compound RDKit::MolStandardize::NeutralValidation... Generating docs for compound RDKit::MolStandardize::NoAtomValidation... Generating docs for compound RDKit::MolStandardize::Normalizer... Generating docs for nested compound RDKit::MolStandardize::Normalizer::Product... Generating docs for compound RDKit::MolStandardize::RDKitValidation... Generating docs for compound RDKit::MolStandardize::Reionizer... Generating docs for compound RDKit::MolStandardize::TautomerCanonicalizer... Generating docs for compound RDKit::MolStandardize::TautomerCatalogEntry... Generating docs for compound RDKit::MolStandardize::TautomerCatalogParams... Generating docs for compound RDKit::MolStandardize::TautomerEnumerator... Generating docs for compound RDKit::MolStandardize::TautomerTransform... Generating docs for compound RDKit::MolStandardize::TransformCatalogEntry... Generating docs for compound RDKit::MolStandardize::TransformCatalogParams... Generating docs for compound RDKit::MolStandardize::Uncharger... Generating docs for compound RDKit::MolStandardize::ValidationErrorInfo... Generating docs for compound RDKit::MolStandardize::ValidationMethod... Generating docs for namespace RDKit::MorganFingerprint Generating docs for compound RDKit::MorganFingerprint::MorganArguments... Generating docs for compound RDKit::MorganFingerprint::MorganAtomEnv... Generating docs for compound RDKit::MorganFingerprint::MorganAtomInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganBondInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganEnvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator... Generating docs for namespace RDKit::MorganFingerprints Generating docs for compound RDKit::MorganFingerprints::ss_matcher... Generating docs for namespace RDKit::PicklerOps Generating docs for namespace RDKit::RDKitFP Generating docs for compound RDKit::RDKitFP::RDKitFPArguments... Generating docs for compound RDKit::RDKitFP::RDKitFPAtomEnv... Generating docs for compound RDKit::RDKitFP::RDKitFPAtomInvGenerator... Generating docs for compound RDKit::RDKitFP::RDKitFPEnvGenerator... Generating docs for namespace RDKit::RDKitFPUtils Generating docs for namespace RDKit::RDTypeTag Generating docs for namespace RDKit::RDTypeTag::detail Generating docs for compound RDKit::RDTypeTag::detail::Value... Generating docs for namespace RDKit::ReactionRunnerUtils Generating docs for namespace RDKit::ReducedGraphs Generating docs for namespace RDKit::RxnOps Generating docs for namespace RDKit::SLNParse Generating docs for compound RDKit::SLNParse::AttribType... Generating docs for namespace RDKit::SmartsWrite Generating docs for namespace RDKit::SmilesWrite Generating docs for namespace RDKit::StructureCheck Generating docs for compound RDKit::StructureCheck::AugmentedAtom... Ge/<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:87: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(const bool includeChirality=false, const uint32_t torsionAtomCount=4, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:108: warning: The following parameters of RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(const bool includeChirality=false, const uint32_t torsionAtomCount=4, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) are not documented: parameter 'countSimulation' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:33: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::TopologicalTorsion::TopologicalTorsionArguments< OutputType >::TopologicalTorsionArguments(const bool includeChirality, const uint32_t torsionAtomCount, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:44: warning: The following parameters of RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(const bool includeChirality, const uint32_t torsionAtomCount, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) are not documented: parameter 'countSimulation' /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:57: warning: The following parameters of RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h:80: warning: The following parameters of RDPickers::HierarchicalClusterPicker::pick(const double *distMat, unsigned int poolSize, unsigned int pickSize) const are not documented: parameter 'distMat' /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h:54: warning: argument 'firstPicks' of command @param is not found in the argument list of RDPickers::MaxMinPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h:54: warning: argument 'seed' of command @param is not found in the argument list of RDPickers::MaxMinPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const nerating docs for compound RDKit::StructureCheck::ChargeFix... Generating docs for compound RDKit::StructureCheck::IncEntry... Generating docs for compound RDKit::StructureCheck::Ligand... Generating docs for compound RDKit::StructureCheck::Neighbourhood... Generating docs for compound RDKit::StructureCheck::PathEntry... Generating docs for compound RDKit::StructureCheck::StructChecker... Generating docs for compound RDKit::StructureCheck::StructCheckerOptions... Generating docs for compound RDKit::StructureCheck::StructCheckTautomer... Generating docs for namespace RDKit::Subgraphs Generating docs for namespace RDKit::TopologicalTorsion Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionArguments... Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv... Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator... Generating docs for namespace RDKit::UFF Generating docs for namespace RDKit::UFF::Tools Generating docs for compound RDKit::UFF::Tools::DefaultTorsionBondSmarts... Generating docs for namespace RDKit::Utils Generating docs for compound RDKit::Utils::LocaleSwitcher... Generating docs for namespace RDKit::Utils::detail Generating docs for namespace RDLog Generating docs for namespace RDNumeric Generating docs for compound RDNumeric::Matrix... Generating docs for compound RDNumeric::SquareMatrix... Generating docs for compound RDNumeric::SymmMatrix... Generating docs for compound RDNumeric::Vector... Generating docs for namespace RDNumeric::Alignments Generating docs for namespace RDNumeric::EigenSolvers Generating docs for namespace RDPickers Generating docs for compound RDPickers::DistPicker... Generating docs for compound RDPickers::HierarchicalClusterPicker... Generating docs for compound RDPickers::MaxMinPicker... Generating docs for compound RDPickers::MaxMinPickInfo... Generating docs for namespace RingUtils Generating docs for namespace SmilesParseOps Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 15926/65536 hits=133999 misses=17233 finished... (cd /<>/rdkit-201809.1+dfsg/Docs/Book; RDBASE=/<>/rdkit-201809.1+dfsg /usr/bin/make html) make[2]: Entering directory '/<>/rdkit-201809.1+dfsg/Docs/Book' mkdir -p _build/html/cppapi cp -r /<>/rdkit-201809.1+dfsg/Code/docs/* _build/html/cppapi sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.8.3 building [mo]: targets for 0 po files that are out of date building [html]: targets for 296 source files that are out of date updating environment: 296 added, 0 changed, 0 removed reading sources... [ 0%] BackwardsIncompatibleChanges reading sources... [ 0%] Cartridge reading sources... [ 1%] Cookbook reading sources... [ 1%] GettingStartedInPython reading sources... [ 1%] Install reading sources... [ 2%] Overview reading sources... [ 2%] RDKit_Book reading sources... [ 2%] api-docs reading sources... [ 3%] index reading sources... [ 3%] source/modules reading sources... [ 3%] source/rdkit reading sources... [ 4%] source/rdkit.Avalon reading sources... 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[100%] source/rdkit.utils.spiral /usr/lib/python3/dist-packages/recommonmark/parser.py:280: UserWarning: Unsupported inline type Hardbreak warn("Unsupported inline type " + inline.t) /<>/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2720: WARNING: Block quote ends without a blank line; unexpected unindent. /<>/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2729: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon.pyAvalonTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AllChem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Pairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Sheridan' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Torsions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BRICS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BuildFragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.AlignDepict' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.BulkTester' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.DescriptorUtilities' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.SDFToCSV' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.TemplateExpand' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalForceFields' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Crippen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.DSViewer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.IPythonConsole' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.MolDrawing' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.SimilarityMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.aggCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.cairoCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.canvasbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.mplCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.qtCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.rdMolDraw2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.AtomTypes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState_VSA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.Fingerprinter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateHeterocycles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateStereoisomers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FastSDMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatFinderCLI' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapParser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapPoint' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.FeatDirUtilsRD' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.ShowFeats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FilterCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.ClusterMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.DbFpSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.FingerprintMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.MolSimilarity' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.SimilarityScreener' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle.FraggleSim' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentMatcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fragments' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FunctionalGroups' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.GraphDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Graphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Lipinski' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MACCSkeys' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.FingerprintUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_orig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_sa' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.InchiInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolStandardize.rdMolStandardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolSurf' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PandasTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PeriodicTable' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Generate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Gobbi_Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.LazyGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Matcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.SigFactory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.EmbedLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.ExcludedVolume' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.Pharmacophore' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PropertyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.QED' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Randomize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Recap' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SATIS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SaltRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.MurckoScaffold' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.ScaffoldTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ShowMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum.Enumerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.BuilderUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeAligner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeBuilder' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeObjects' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.testCombined' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.DbMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.MolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TemplateAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TorsionFingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.inchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdChemReactions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdCoordGen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDepictor' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDistGeom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFMCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFingerprintGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst:2: WARNING: Title underline too short. rdkit.Chem.rdForceFieldHelpers module ================================= WARNING: autodoc: failed to import module 'Chem.rdForceFieldHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFreeSASA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMMPA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolDescriptors module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolHash' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolInterchange module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolInterchange' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolTransforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst:2: WARNING: Title underline too short. rdkit.Chem.rdPartialCharges module ================================= WARNING: autodoc: failed to import module 'Chem.rdPartialCharges' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst:2: WARNING: Title underline too short. rdkit.Chem.rdRGroupDecomposition module ================================= WARNING: autodoc: failed to import module 'Chem.rdRGroupDecomposition' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdSLNParse' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdShapeHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdStructChecker' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst:2: WARNING: Title underline too short. rdkit.Chem.rdSubstructLibrary module ================================= WARNING: autodoc: failed to import module 'Chem.rdSubstructLibrary' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdchem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfiltercatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfragcatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdinchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolfiles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolops' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdqueries' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdtrajectory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip.Metric' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsemble' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsembleDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.HierarchyVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.LazySignature' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.TopNContainer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.VectCollection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbConnection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbModule' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbReport' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbResultSet' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.StorageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DistanceGeometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ForceField' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Geometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.AnalyzeComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.BuildComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Butina' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Clusters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Murtagh' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Resemblance' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Standardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.murtagh_test' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.AdjustComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.BayesComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.CompositeRun' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.DataUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.FindQuantBounds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.MLData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Quantize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.SplitData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Stats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Transforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildQuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildSigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Forest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.ID3' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.PruneTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.QuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.SigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Tree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.randomtest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.CompoundDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.MoleculeDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Parser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.EnrichPlot' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.GrowComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitClusterer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitRank' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.entropy' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.DistFunctions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNRegressionModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils.VoteImg' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MatOps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.PackageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.Packager' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.ClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.ActFuncs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.NetNode' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Network' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Trainers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT.Risk' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ScreenComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.files' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Numerics' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDConfig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDLogger' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDPaths' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDRandom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters.SimilarityPickers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'TestRunner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Filter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Node' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbMolSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbPickleSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SDSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsMolFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesDupeFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesOutput' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.demo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Output' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Supply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Transform' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'six' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.cactvs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw_qax' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.comhack' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.fileutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.listutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.spiral' from module 'rdkit'; the following exception was raised: No module named 'rdkit' looking for now-outdated files... none found pickling environment... done checking consistency... /<>/rdkit-201809.1+dfsg/Docs/Book/source/modules.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... 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WARNING: html_static_path entry '/<>/rdkit-201809.1+dfsg/Docs/Book/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 297 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/<>/rdkit-201809.1+dfsg/Docs/Book' (cd /<>/rdkit-201809.1+dfsg/Docs/Book; RDBASE=/<>/rdkit-201809.1+dfsg /usr/bin/make latexpdf) make[2]: Entering directory '/<>/rdkit-201809.1+dfsg/Docs/Book' mkdir -p _build/html/cppapi cp -r /<>/rdkit-201809.1+dfsg/Code/docs/* _build/html/cppapi sphinx-build -b latex -d _build/doctrees . _build/latex Running Sphinx v1.8.3 making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 296 added, 0 changed, 0 removed reading sources... [ 0%] BackwardsIncompatibleChanges reading sources... 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[ 97%] source/rdkit.utils reading sources... [ 97%] source/rdkit.utils.cactvs reading sources... [ 97%] source/rdkit.utils.chemdraw reading sources... [ 98%] source/rdkit.utils.chemdraw_qax reading sources... [ 98%] source/rdkit.utils.chemutils reading sources... [ 98%] source/rdkit.utils.comhack reading sources... [ 99%] source/rdkit.utils.fileutils reading sources... [ 99%] source/rdkit.utils.listutils reading sources... [100%] source/rdkit.utils.spiral /usr/lib/python3/dist-packages/recommonmark/parser.py:280: UserWarning: Unsupported inline type Hardbreak warn("Unsupported inline type " + inline.t) /<>/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2720: WARNING: Block quote ends without a blank line; unexpected unindent. /<>/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2729: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon.pyAvalonTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AllChem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Pairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Sheridan' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Torsions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BRICS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BuildFragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.AlignDepict' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.BulkTester' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.DescriptorUtilities' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.SDFToCSV' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.TemplateExpand' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalForceFields' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Crippen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.DSViewer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.IPythonConsole' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.MolDrawing' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.SimilarityMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.aggCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.cairoCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.canvasbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.mplCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.qtCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.rdMolDraw2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.AtomTypes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState_VSA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.Fingerprinter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateHeterocycles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateStereoisomers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FastSDMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatFinderCLI' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapParser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapPoint' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.FeatDirUtilsRD' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.ShowFeats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FilterCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.ClusterMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.DbFpSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.FingerprintMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.MolSimilarity' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.SimilarityScreener' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle.FraggleSim' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentMatcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fragments' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FunctionalGroups' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.GraphDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Graphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Lipinski' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MACCSkeys' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.FingerprintUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_orig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_sa' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.InchiInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolStandardize.rdMolStandardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolSurf' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PandasTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PeriodicTable' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Generate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Gobbi_Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.LazyGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Matcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.SigFactory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.EmbedLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.ExcludedVolume' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.Pharmacophore' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PropertyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.QED' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Randomize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Recap' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SATIS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SaltRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.MurckoScaffold' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.ScaffoldTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ShowMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum.Enumerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.BuilderUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeAligner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeBuilder' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeObjects' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.testCombined' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.DbMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.MolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TemplateAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TorsionFingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.inchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdChemReactions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdCoordGen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDepictor' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDistGeom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFMCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFingerprintGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst:2: WARNING: Title underline too short. rdkit.Chem.rdForceFieldHelpers module ================================= WARNING: autodoc: failed to import module 'Chem.rdForceFieldHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFreeSASA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMMPA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolDescriptors module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolHash' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolInterchange module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolInterchange' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolTransforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst:2: WARNING: Title underline too short. rdkit.Chem.rdPartialCharges module ================================= WARNING: autodoc: failed to import module 'Chem.rdPartialCharges' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst:2: WARNING: Title underline too short. rdkit.Chem.rdRGroupDecomposition module ================================= WARNING: autodoc: failed to import module 'Chem.rdRGroupDecomposition' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdSLNParse' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdShapeHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdStructChecker' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /<>/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst:2: WARNING: Title underline too short. rdkit.Chem.rdSubstructLibrary module ================================= WARNING: autodoc: failed to import module 'Chem.rdSubstructLibrary' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdchem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfiltercatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfragcatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdinchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolfiles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolops' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdqueries' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdtrajectory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip.Metric' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsemble' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsembleDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.HierarchyVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.LazySignature' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.TopNContainer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.VectCollection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbConnection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbModule' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbReport' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbResultSet' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.StorageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DistanceGeometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ForceField' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Geometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.AnalyzeComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.BuildComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Butina' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Clusters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Murtagh' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Resemblance' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Standardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.murtagh_test' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.AdjustComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.BayesComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.CompositeRun' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.DataUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.FindQuantBounds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.MLData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Quantize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.SplitData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Stats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Transforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildQuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildSigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Forest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.ID3' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.PruneTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.QuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.SigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Tree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.randomtest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.CompoundDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.MoleculeDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Parser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.EnrichPlot' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.GrowComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitClusterer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitRank' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.entropy' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.DistFunctions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNRegressionModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils.VoteImg' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MatOps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.PackageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.Packager' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.ClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.ActFuncs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.NetNode' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Network' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Trainers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT.Risk' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ScreenComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.files' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Numerics' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDConfig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDLogger' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDPaths' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDRandom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters.SimilarityPickers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'TestRunner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Filter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Node' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbMolSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbPickleSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SDSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsMolFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesDupeFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesOutput' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.demo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Output' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Supply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Transform' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'six' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.cactvs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw_qax' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.comhack' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.fileutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.listutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.spiral' from module 'rdkit'; the following exception was raised: No module named 'rdkit' looking for now-outdated files... none found pickling environment... done checking consistency... /<>/rdkit-201809.1+dfsg/Docs/Book/source/modules.rst: WARNING: document isn't included in any toctree done processing RDKit.tex...index Overview Install GettingStartedInPython RDKit_Book Cookbook Cartridge BackwardsIncompatibleChanges api-docs source/rdkit source/rdkit.Avalon source/rdkit.Avalon.pyAvalonTools source/rdkit.Chem source/rdkit.Chem.AtomPairs source/rdkit.Chem.AtomPairs.Pairs source/rdkit.Chem.AtomPairs.Sheridan source/rdkit.Chem.AtomPairs.Torsions source/rdkit.Chem.AtomPairs.Utils source/rdkit.Chem.ChemUtils source/rdkit.Chem.ChemUtils.AlignDepict source/rdkit.Chem.ChemUtils.BulkTester source/rdkit.Chem.ChemUtils.DescriptorUtilities source/rdkit.Chem.ChemUtils.SDFToCSV source/rdkit.Chem.ChemUtils.TemplateExpand source/rdkit.Chem.Draw source/rdkit.Chem.Draw.IPythonConsole source/rdkit.Chem.Draw.MolDrawing source/rdkit.Chem.Draw.SimilarityMaps source/rdkit.Chem.Draw.rdMolDraw2D source/rdkit.Chem.Draw.aggCanvas source/rdkit.Chem.Draw.cairoCanvas source/rdkit.Chem.Draw.canvasbase source/rdkit.Chem.Draw.mplCanvas source/rdkit.Chem.Draw.qtCanvas source/rdkit.Chem.EState source/rdkit.Chem.EState.AtomTypes source/rdkit.Chem.EState.EState source/rdkit.Chem.EState.EState_VSA source/rdkit.Chem.EState.Fingerprinter source/rdkit.Chem.FeatMaps source/rdkit.Chem.FeatMaps.FeatMapParser source/rdkit.Chem.FeatMaps.FeatMapPoint source/rdkit.Chem.FeatMaps.FeatMapUtils source/rdkit.Chem.FeatMaps.FeatMaps source/rdkit.Chem.Features source/rdkit.Chem.Features.FeatDirUtilsRD source/rdkit.Chem.Features.ShowFeats source/rdkit.Chem.Fingerprints source/rdkit.Chem.Fingerprints.ClusterMols source/rdkit.Chem.Fingerprints.DbFpSupplier source/rdkit.Chem.Fingerprints.FingerprintMols source/rdkit.Chem.Fingerprints.MolSimilarity source/rdkit.Chem.Fingerprints.SimilarityScreener source/rdkit.Chem.Fraggle source/rdkit.Chem.Fraggle.FraggleSim source/rdkit.Chem.MolDb source/rdkit.Chem.MolDb.FingerprintUtils source/rdkit.Chem.MolDb.Loader source/rdkit.Chem.MolDb.Loader_orig source/rdkit.Chem.MolDb.Loader_sa source/rdkit.Chem.MolKey source/rdkit.Chem.MolKey.InchiInfo source/rdkit.Chem.MolKey.MolKey source/rdkit.Chem.Pharm2D source/rdkit.Chem.Pharm2D.Generate source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D source/rdkit.Chem.Pharm2D.LazyGenerator source/rdkit.Chem.Pharm2D.Matcher source/rdkit.Chem.Pharm2D.SigFactory source/rdkit.Chem.Pharm2D.Utils source/rdkit.Chem.Pharm3D source/rdkit.Chem.Pharm3D.EmbedLib source/rdkit.Chem.Pharm3D.ExcludedVolume source/rdkit.Chem.Pharm3D.Pharmacophore source/rdkit.Chem.Scaffolds source/rdkit.Chem.Scaffolds.MurckoScaffold source/rdkit.Chem.Scaffolds.ScaffoldTree source/rdkit.Chem.SimpleEnum source/rdkit.Chem.SimpleEnum.Enumerator source/rdkit.Chem.Subshape source/rdkit.Chem.Subshape.BuilderUtils source/rdkit.Chem.Subshape.SubshapeAligner source/rdkit.Chem.Subshape.SubshapeBuilder source/rdkit.Chem.Subshape.SubshapeObjects source/rdkit.Chem.Subshape.testCombined source/rdkit.Chem.Suppliers source/rdkit.Chem.Suppliers.DbMolSupplier source/rdkit.Chem.Suppliers.MolSupplier source/rdkit.Chem.fmcs source/rdkit.Chem.fmcs.fmcs source/rdkit.Chem.AllChem source/rdkit.Chem.BRICS source/rdkit.Chem.BuildFragmentCatalog source/rdkit.Chem.ChemicalFeatures source/rdkit.Chem.ChemicalForceFields source/rdkit.Chem.Crippen source/rdkit.Chem.DSViewer source/rdkit.Chem.Descriptors source/rdkit.Chem.Descriptors3D source/rdkit.Chem.EnumerateHeterocycles source/rdkit.Chem.EnumerateStereoisomers source/rdkit.Chem.FastSDMolSupplier source/rdkit.Chem.FeatFinderCLI source/rdkit.Chem.FilterCatalog source/rdkit.Chem.FragmentCatalog source/rdkit.Chem.FragmentMatcher source/rdkit.Chem.Fragments source/rdkit.Chem.FunctionalGroups source/rdkit.Chem.GraphDescriptors source/rdkit.Chem.Graphs source/rdkit.Chem.Lipinski source/rdkit.Chem.MACCSkeys source/rdkit.Chem.MCS source/rdkit.Chem.MolCatalog source/rdkit.Chem.MolStandardize source/rdkit.Chem.MolStandardize.rdMolStandardize source/rdkit.Chem.MolSurf source/rdkit.Chem.PandasTools source/rdkit.Chem.PeriodicTable source/rdkit.Chem.PropertyMol source/rdkit.Chem.PyMol source/rdkit.Chem.QED source/rdkit.Chem.Randomize source/rdkit.Chem.Recap source/rdkit.Chem.ReducedGraphs source/rdkit.Chem.SATIS source/rdkit.Chem.SaltRemover source/rdkit.Chem.ShowMols source/rdkit.Chem.TemplateAlign source/rdkit.Chem.TorsionFingerprints source/rdkit.Chem.inchi source/rdkit.Chem.rdchem source/rdkit.Chem.rdDistGeom source/rdkit.Chem.rdqueries source/rdkit.Chem.rdFMCS source/rdkit.Chem.rdMolAlign source/rdkit.Chem.rdMolHash source/rdkit.Chem.rdReducedGraphs source/rdkit.Chem.rdtrajectory source/rdkit.Chem.rdMolTransforms source/rdkit.Chem.rdmolfiles source/rdkit.Chem.rdPartialCharges source/rdkit.Chem.rdMolCatalog source/rdkit.Chem.rdCoordGen source/rdkit.Chem.rdMolChemicalFeatures source/rdkit.Chem.rdMMPA source/rdkit.Chem.rdRGroupDecomposition source/rdkit.Chem.rdForceFieldHelpers source/rdkit.Chem.rdDepictor source/rdkit.Chem.rdChemicalFeatures source/rdkit.Chem.rdmolops source/rdkit.Chem.rdFreeSASA source/rdkit.Chem.rdMolInterchange source/rdkit.Chem.rdShapeHelpers source/rdkit.Chem.rdinchi source/rdkit.Chem.rdChemReactions source/rdkit.Chem.rdSubstructLibrary source/rdkit.Chem.rdfiltercatalog source/rdkit.Chem.rdfragcatalog source/rdkit.Chem.rdStructChecker source/rdkit.Chem.rdMolDescriptors source/rdkit.Chem.rdFingerprintGenerator source/rdkit.Chem.rdSLNParse source/rdkit.DataManip source/rdkit.DataManip.Metric source/rdkit.DataStructs source/rdkit.DataStructs.BitEnsemble source/rdkit.DataStructs.BitEnsembleDb source/rdkit.DataStructs.BitUtils source/rdkit.DataStructs.HierarchyVis source/rdkit.DataStructs.LazySignature source/rdkit.DataStructs.TopNContainer source/rdkit.DataStructs.VectCollection source/rdkit.Dbase source/rdkit.Dbase.DbConnection source/rdkit.Dbase.DbInfo source/rdkit.Dbase.DbModule source/rdkit.Dbase.DbReport source/rdkit.Dbase.DbResultSet source/rdkit.Dbase.DbUtils source/rdkit.Dbase.StorageUtils source/rdkit.DistanceGeometry source/rdkit.ForceField source/rdkit.Geometry source/rdkit.ML source/rdkit.ML.Cluster source/rdkit.ML.Cluster.Butina source/rdkit.ML.Cluster.ClusterUtils source/rdkit.ML.Cluster.ClusterVis source/rdkit.ML.Cluster.Clusters source/rdkit.ML.Cluster.Murtagh source/rdkit.ML.Cluster.Resemblance source/rdkit.ML.Cluster.Standardize source/rdkit.ML.Cluster.murtagh_test source/rdkit.ML.Composite source/rdkit.ML.Composite.AdjustComposite source/rdkit.ML.Composite.BayesComposite source/rdkit.ML.Composite.Composite source/rdkit.ML.Data source/rdkit.ML.Data.DataUtils source/rdkit.ML.Data.FindQuantBounds source/rdkit.ML.Data.MLData source/rdkit.ML.Data.Quantize source/rdkit.ML.Data.SplitData source/rdkit.ML.Data.Stats source/rdkit.ML.Data.Transforms source/rdkit.ML.DecTree source/rdkit.ML.DecTree.BuildQuantTree source/rdkit.ML.DecTree.BuildSigTree source/rdkit.ML.DecTree.CrossValidate source/rdkit.ML.DecTree.DecTree source/rdkit.ML.DecTree.Forest source/rdkit.ML.DecTree.ID3 source/rdkit.ML.DecTree.PruneTree source/rdkit.ML.DecTree.QuantTree source/rdkit.ML.DecTree.SigTree source/rdkit.ML.DecTree.Tree source/rdkit.ML.DecTree.TreeUtils source/rdkit.ML.DecTree.TreeVis source/rdkit.ML.DecTree.randomtest source/rdkit.ML.Descriptors source/rdkit.ML.Descriptors.CompoundDescriptors source/rdkit.ML.Descriptors.Descriptors source/rdkit.ML.Descriptors.MoleculeDescriptors source/rdkit.ML.Descriptors.Parser source/rdkit.ML.InfoTheory source/rdkit.ML.InfoTheory.BitClusterer source/rdkit.ML.InfoTheory.BitRank source/rdkit.ML.InfoTheory.entropy source/rdkit.ML.KNN source/rdkit.ML.KNN.CrossValidate source/rdkit.ML.KNN.DistFunctions source/rdkit.ML.KNN.KNNClassificationModel source/rdkit.ML.KNN.KNNModel source/rdkit.ML.KNN.KNNRegressionModel source/rdkit.ML.MLUtils source/rdkit.ML.MLUtils.VoteImg source/rdkit.ML.ModelPackage source/rdkit.ML.ModelPackage.PackageUtils source/rdkit.ML.ModelPackage.Packager source/rdkit.ML.NaiveBayes source/rdkit.ML.NaiveBayes.ClassificationModel source/rdkit.ML.NaiveBayes.CrossValidate source/rdkit.ML.Neural source/rdkit.ML.Neural.ActFuncs source/rdkit.ML.Neural.CrossValidate source/rdkit.ML.Neural.NetNode source/rdkit.ML.Neural.Network source/rdkit.ML.Neural.Trainers source/rdkit.ML.SLT source/rdkit.ML.SLT.Risk source/rdkit.ML.Scoring source/rdkit.ML.Scoring.Scoring source/rdkit.ML.AnalyzeComposite source/rdkit.ML.BuildComposite source/rdkit.ML.CompositeRun source/rdkit.ML.EnrichPlot source/rdkit.ML.GrowComposite source/rdkit.ML.MatOps source/rdkit.ML.ScreenComposite source/rdkit.ML.files source/rdkit.Numerics source/rdkit.SimDivFilters source/rdkit.SimDivFilters.SimilarityPickers source/rdkit.VLib source/rdkit.VLib.NodeLib source/rdkit.VLib.NodeLib.DbMolSupply source/rdkit.VLib.NodeLib.DbPickleSupplier source/rdkit.VLib.NodeLib.SDSupply source/rdkit.VLib.NodeLib.SmartsMolFilter source/rdkit.VLib.NodeLib.SmartsRemover source/rdkit.VLib.NodeLib.SmilesDupeFilter source/rdkit.VLib.NodeLib.SmilesOutput source/rdkit.VLib.NodeLib.SmilesSupply source/rdkit.VLib.NodeLib.demo source/rdkit.VLib.Filter source/rdkit.VLib.Node source/rdkit.VLib.Output source/rdkit.VLib.Supply source/rdkit.VLib.Transform source/rdkit.utils source/rdkit.utils.cactvs source/rdkit.utils.chemdraw source/rdkit.utils.chemdraw_qax source/rdkit.utils.chemutils source/rdkit.utils.comhack source/rdkit.utils.fileutils source/rdkit.utils.listutils source/rdkit.utils.spiral source/rdkit.RDConfig source/rdkit.RDLogger source/rdkit.RDPaths source/rdkit.RDRandom source/rdkit.TestRunner source/rdkit.six resolving references... writing... done copying images... 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 102--103 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 196. [2] [3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 703--704 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 801--802 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 982--984 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" Underfull \hbox (badness 10000) in paragraph at lines 992--993 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [14] [15] [16] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 1088--1089 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [17] [18] [19] LaTeX Warning: Hyper reference `GettingStartedInPython:chem-vs-allchem' on page 20 undefined on input line 1267. [20] [21] [22] LaTeX Warning: Hyper reference `GettingStartedInPython:the-sssr-problem' on pag e 23 undefined on input line 1482. [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1615--1617 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1615--1617 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. 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[67 <./picture_9.png (PNG copy)>] [68 <./picture_8.png> <./picture_7.png (PNG c opy)>] [69 <./picture_10.png> <./picture_12.png>] [70 <./picture_11.png>] Overfull \vbox (3.19966pt too high) detected at line 4700 [71] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4703--4703 [] Underfull \hbox (badness 10000) in paragraph at lines 4703--4703 [72] [73] [74] [75] [76] [77] LaTeX Warning: Hyper reference `RDKit_Book:ph4-figure' on page 78 undefined on input line 5159. [78] [79 <./picture_10.jpg>] Overfull \vbox (2.72571pt too high) detected at line 5363 [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 _Chi-ral-i-ty-Pos-si- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 _Re-ac-tion-De- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 mo-lAtomMap- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 molFileIn-ver- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 mol-Rxn-Com-po- [82] [83] [84] Chapter 5. [85] [86 <./indole1.png>] [87] [88] [89] [90] [91] [92] Overfull \vbox (1.13905pt too high) detected at line 6240 [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 6273--6274 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [95 <./similarity_map_rf.png>] [96] [97] Underfull \vbox (badness 10000) detected at line 6499 Overfull \vbox (2.68169pt too high) detected at line 6499 [98] [99] [100] Chapter 6. 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[119] [120] Chapter 8. [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] Chapter 9. [135] [136] Chapter 10. No file RDKit.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. [137] (./RDKit.aux) Package rerunfilecheck Warning: File `RDKit.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (141 pages, 1591658 bytes). Transcript written on RDKit.log. Latexmk: Index file 'RDKit.idx' was written Latexmk: Missing input file: 'RDKit.ind' from line 'No file RDKit.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'RDKit.pdf' Rule 'makeindex RDKit.idx': File changes, etc: Changed files, or newly in use since previous run(s): 'RDKit.idx' Non-existent destination files: 'RDKit.ind' ------------ Run number 1 of rule 'makeindex RDKit.idx' ------------ ------------ Running 'makeindex -s python.ist -o "RDKit.ind" "RDKit.idx"' ------------ === TeX engine is 'pdfTeX' Latexmk: applying rule 'makeindex RDKit.idx'... This is makeindex, version 2.15 [TeX Live 2019/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file RDKit.idx...done (0 entries accepted, 0 rejected). Nothing written in RDKit.ind. Transcript written in RDKit.ilg. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 102--103 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 196. [2] [3] [4] Chapter 2. [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 703--704 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 801--802 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 982--984 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" Underfull \hbox (badness 10000) in paragraph at lines 992--993 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [14] [15] [16] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 1088--1089 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [17] [18] [19] [20] [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1615--1617 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1615--1617 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 1635--1640 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk 2_mol2.png>] [30 <./cdk2_molgrid.png>] [31 <./cdk2_molgrid_aligned.png (PNG cop y)>] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41 <./mfp2_bit872.png> <./rd k_bit1553.png>] [42 <./rdk_bit1553_2.png>] [43] [44 <./similarity_map_fp1.png>] [45 <./similarity_map_fp2.png>] [46 <./similarity_map_fp3.png>] [47] [48 <./sim ilarity_map_charges.png>] [49 <./similarity_map_crippen.png>] [50] [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 6792) in paragraph at lines 3556--3559 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [58] [59] [60 <./picture_6.png>] [61] Underfull \hbox (badness 10000) in paragraph at lines 3876--3880 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3886--3890 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 3954--3955 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 3959--3960 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 3988--3991 []|\T1/ptm/m/n/10 Number of bridge-head atoms Overfull \hbox (150.19545pt too wide) in paragraph at lines 4002--4004 [] Underfull \hbox (badness 10000) in paragraph at lines 4002--4004 \T1/ptm/m/n/10 to the orig-i-nal Underfull \hbox (badness 10000) in paragraph at lines 4021--4024 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4030--4034 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4040--4044 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . 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[67 <./picture_9.png (PNG copy)>] [68 <./picture_8.png> <./picture_7.png (PNG c opy)>] [69 <./picture_10.png> <./picture_12.png>] [70 <./picture_11.png>] Overfull \vbox (3.19966pt too high) detected at line 4700 [71] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4703--4703 [] Underfull \hbox (badness 10000) in paragraph at lines 4703--4703 [72] [73] [74] [75] [76] [77] [78] [79 <./picture_10.jpg>] Overfull \vbox (2.72571pt too high) detected at line 5363 [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 _Chi-ral-i-ty-Pos-si- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 _Re-ac-tion-De- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 mo-lAtomMap- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 molFileIn-ver- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 mol-Rxn-Com-po- [82] [83] [84] Chapter 5. [85] [86 <./indole1.png>] [87] [88] [89] [90] [91] [92] Overfull \vbox (1.13905pt too high) detected at line 6240 [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 6273--6274 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [95 <./similarity_map_rf.png>] [96] [97] Underfull \vbox (badness 10000) detected at line 6499 Overfull \vbox (2.68169pt too high) detected at line 6499 [98] [99] [100] Chapter 6. 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[119] [120] Chapter 8. [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] Chapter 9. [135] [136] Chapter 10. (./RDKit.ind) [137] (./RDKit.aux) LaTeX Warning: There were undefined references. LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (145 pages, 1621510 bytes). Transcript written on RDKit.log. 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LaTeX Warning: Label `BackwardsIncompatibleChanges:license' multiply defined. ) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./RDKit.out) (./RDKit.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./RDKit.toc [1] [2] [3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [4]) [5] [6] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 102--103 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 196. [2] [3] [4] Chapter 2. [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 703--704 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 801--802 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 982--984 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 982--984 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" Underfull \hbox (badness 10000) in paragraph at lines 992--993 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [14] [15] [16] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 1088--1089 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [17] [18] [19] [20] [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1615--1617 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1615--1617 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 1635--1640 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk 2_mol2.png>] [30 <./cdk2_molgrid.png>] [31 <./cdk2_molgrid_aligned.png (PNG cop y)>] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41 <./mfp2_bit872.png> <./rd k_bit1553.png>] [42 <./rdk_bit1553_2.png>] [43] [44 <./similarity_map_fp1.png>] [45 <./similarity_map_fp2.png>] [46 <./similarity_map_fp3.png>] [47] [48 <./sim ilarity_map_charges.png>] [49 <./similarity_map_crippen.png>] [50] [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 6792) in paragraph at lines 3556--3559 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [58] [59] [60 <./picture_6.png>] [61] Underfull \hbox (badness 10000) in paragraph at lines 3876--3880 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3886--3890 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 3954--3955 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 3959--3960 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 3988--3991 []|\T1/ptm/m/n/10 Number of bridge-head atoms Overfull \hbox (150.19545pt too wide) in paragraph at lines 4002--4004 [] Underfull \hbox (badness 10000) in paragraph at lines 4002--4004 \T1/ptm/m/n/10 to the orig-i-nal Underfull \hbox (badness 10000) in paragraph at lines 4021--4024 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4030--4034 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . 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Underfull \hbox (badness 10000) in paragraph at lines 4076--4079 []|\T1/ptm/m/n/10 implemented us-ing a set of Underfull \hbox (badness 10000) in paragraph at lines 4076--4079 \T1/ptm/m/n/10 SMARTS def-i-ni-tions in $(RD- Overfull \hbox (9.18636pt too wide) in paragraph at lines 4076--4079 \T1/ptm/m/n/10 BASE)/Data/FragmentDescriptors.csv| Underfull \hbox (badness 7273) in paragraph at lines 4085--4088 \T1/ptm/m/n/10 and Con-soni ^^PDe-scrip-tors from [62] Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 De-scrip- Overfull \hbox (19.60335pt too wide) in paragraph at lines 4235--4235 \T1/ptm/m/n/10 tor/Descriptor Overfull \hbox (3.88354pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 Lan- Overfull \hbox (8.88354pt too wide) in paragraph at lines 4235--4235 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 \T1/ptm/m/n/10 best fit Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 PMI1, Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 \T1/ptm/m/n/10 PMI2, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 NPR1, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 Ra- Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 \T1/ptm/m/n/10 dius of Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 In-er-tial Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 \T1/ptm/m/n/10 shape Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 Ec-cen- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 As- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 Sphe- Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 \T1/ptm/m/n/10 roc-ity Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 Au-to- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 GET- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4235--4235 []\T1/ptm/m/n/10 C++| [63] Underfull \hbox (badness 10000) in paragraph at lines 4315--4315 []\T1/ptm/m/n/10 Fin-ger-print Underfull \hbox (badness 10000) in paragraph at lines 4315--4315 []\T1/ptm/m/n/10 Lan- Overfull \hbox (2.77637pt too wide) in paragraph at lines 4315--4315 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4315--4315 []\T1/ptm/m/n/10 Topo-log-i-cal Underfull \hbox (badness 10000) in paragraph at lines 4315--4315 []\T1/ptm/m/n/10 Mor- Underfull \hbox (badness 10000) in paragraph at lines 4315--4315 []\T1/ptm/m/n/10 2D Phar-ma- [64] Overfull \hbox (0.97221pt too wide) in paragraph at lines 4365--4365 []\T1/ptm/m/n/10 Fea- Overfull \hbox (8.75237pt too wide) in paragraph at lines 4365--4365 []\T1/ptm/m/n/10 Donor| Underfull \hbox (badness 10000) in paragraph at lines 4365--4365 []\T1/ptm/m/n/10 Ac- Underfull \hbox (badness 10000) in paragraph at lines 4365--4365 []\T1/pcr/m/n/10 [$([O,S;H1;v2;!$(*-*=[O,N,P,S])]),$([O,S;H0;v2]),$([O,S;-]),$( [N;v3;! 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[67 <./picture_9.png (PNG copy)>] [68 <./picture_8.png> <./picture_7.png (PNG c opy)>] [69 <./picture_10.png> <./picture_12.png>] [70 <./picture_11.png>] Overfull \vbox (3.19966pt too high) detected at line 4700 [71] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4703--4703 [] Underfull \hbox (badness 10000) in paragraph at lines 4703--4703 [72] [73] [74] [75] [76] [77] [78] [79 <./picture_10.jpg>] Overfull \vbox (2.72571pt too high) detected at line 5363 [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 _Chi-ral-i-ty-Pos-si- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 _Re-ac-tion-De- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 mo-lAtomMap- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 molFileIn-ver- Underfull \hbox (badness 10000) in paragraph at lines 5595--5595 []\T1/ptm/m/n/10 mol-Rxn-Com-po- [82] [83] [84] Chapter 5. [85] [86 <./indole1.png>] [87] [88] [89] [90] [91] [92] Overfull \vbox (1.13905pt too high) detected at line 6240 [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 6273--6274 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [95 <./similarity_map_rf.png>] [96] [97] Underfull \vbox (badness 10000) detected at line 6499 Overfull \vbox (2.68169pt too high) detected at line 6499 [98] [99] [100] Chapter 6. [101] [102] [103] Overfull \hbox (232.24419pt too wide) in paragraph at lines 6734--6734 []\T1/pcr/m/n/9 CC(C)C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N2c3cc ccc3[C[]@[][]@[]](O)(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]NC([]=[]O) c4ccccc4N4C([]=[]O)c5ccccc5NC34)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]N1C([ ]=[]O)C(CCCNC([]=[]O)OCc1ccccc1)NC([]=[]O)OC(C)(C)C| Overfull \hbox (86.44435pt too wide) in paragraph at lines 6735--6735 []\T1/pcr/m/n/9 CC(C)C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N2c3cc ccc3[C[]@[][]@[]](O)(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]NC([]=[]O) c4ccccc4N4C([]=[]O)c5ccccc5NC34)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]N1C([ ]=[]O)CCC([]=[]O)[O[]- Underfull \vbox (badness 6268) detected at line 6741 [104] Overfull \hbox (372.64403pt too wide) in paragraph at lines 6783--6783 []\T1/pcr/m/n/9 CNCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]= []C(N)N)C([]=[]O)N1C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( Cc1ccc(O)cc1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1c[nH]cn1)C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc 1ccccc1)C([]=[]O| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6785--6785 []\T1/pcr/m/n/9 CNCCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CCCCNC)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)cc 1)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]@[][]\T1/pcr /b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6787--6787 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCNC(C)C)C([]=[]O)N[C[]@[] []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6789--6789 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6791--6791 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6793--6793 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCNC1CCCCC1)C([]=[]O)N[C[] @[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](| Overfull \hbox (351.04405pt too wide) in paragraph at lines 6796--6796 [][]\T1/pcr/m/n/9 N)NS([]=[]O)([]=[]O)c1c(C)c(C)c2c(c1C)CCC(C)(C)O2)C([]=[]O)N[ C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](COC(C)(C)C)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6797--6797 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC| Overfull \hbox (426.64397pt too wide) in paragraph at lines 6798--6798 []|\T1/pcr/m/n/9 ([]=[]O)CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[ ]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @ H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2 )NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6802--6802 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ 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](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6824--6824 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC([]=[]O| Overfull \hbox (442.84395pt too wide) in paragraph at lines 6825--6825 []|\T1/pcr/m/n/9 )CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr /m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)NC([]= []O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC([]=[]O)[C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6827--6827 []\T1/pcr/m/n/9 NC(N)[]=[]NCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[ C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](N)CC([]=[]O)O)C([]=[]O)N[C[]\T1/pcr/b /n/9 @H[]\T1/pcr/m/n/9 ][]1[]CCSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C( []=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T 1/pcr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/ 9 ](Cc2ccc(O)cc| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6829--6829 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)NC([]=[]| Overfull \vbox (2.68167pt too high) detected at line 6839 [106] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6852--6852 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| Overfull \hbox (21.64442pt too wide) in paragraph at lines 6888--6888 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [107] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6911--6911 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [108] Overfull \vbox (10.4835pt too high) detected at line 7043 [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] Chapter 7. [119] [120] Chapter 8. [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] Chapter 9. [135] [136] Chapter 10. (./RDKit.ind) [137] (./RDKit.aux) LaTeX Warning: There were undefined references. LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (145 pages, 1621510 bytes). Transcript written on RDKit.log. Latexmk: Index file 'RDKit.idx' was written Latexmk: Log file says output to 'RDKit.pdf' Latexmk: List of undefined refs and citations: Label `BackwardsIncompatibleChanges:backwards-incompatible-changes' multiply defined Label `BackwardsIncompatibleChanges:changes-to-ringmatchesringonly-option-in-the-mcs-code' multiply defined Label `BackwardsIncompatibleChanges:getatomsmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:license' multiply defined Label `BackwardsIncompatibleChanges:moltomolblock-generates-a-2d-conformation-when-the-includestereo-flag-is-set' multiply defined Label `BackwardsIncompatibleChanges:moltosmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:release-2018-03' multiply defined Label `BackwardsIncompatibleChanges:release-2018-09' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default-when-called-from-python' multiply defined Label `Cartridge:adjusting-the-similarity-cutoff' multiply defined Label `Cartridge:configuration' multiply defined Label `Cartridge:connectivity-descriptors' multiply defined Label `Cartridge:creating-a-database-from-a-file' multiply defined Label `Cartridge:creating-databases' multiply defined Label `Cartridge:descriptors' multiply defined Label `Cartridge:fingerprint-i-o' multiply defined Label `Cartridge:fingerprint-related' multiply defined Label `Cartridge:functions' multiply defined Label `Cartridge:generating-fingerprints' multiply defined Label `Cartridge:introduction' multiply defined Label `Cartridge:license' multiply defined Label `Cartridge:loading-chembl' multiply defined Label `Cartridge:mcs' multiply defined Label `Cartridge:molecule-comparison' multiply defined Label `Cartridge:molecule-i-o-and-validation' multiply defined Label `Cartridge:molecule-related' multiply defined Label `Cartridge:new-types' multiply defined Label `Cartridge:operators' multiply defined Label `Cartridge:other' multiply defined Label `Cartridge:parameters' multiply defined Label `Cartridge:reference-guide' multiply defined Label `Cartridge:similarity-search' multiply defined Label `Cartridge:similarity-searches' multiply defined Label `Cartridge:smarts-based-queries' multiply defined Label `Cartridge:substructure-and-exact-structure-search' multiply defined Label `Cartridge:substructure-operations' multiply defined Label `Cartridge:substructure-searches' multiply defined Label `Cartridge:the-rdkit-database-cartridge' multiply defined Label `Cartridge:tuning-queries' multiply defined Label `Cartridge:tutorial' multiply defined Label `Cartridge:using-stereochemistry' multiply defined Label `Cartridge:using-the-cartridge-from-python' multiply defined Label `Cartridge:using-the-mcs-code' multiply defined Label `Cartridge:what-is-this' multiply defined Label `Cartridge:working-with-fingerprints' multiply defined Label `Cookbook:cleaning-up-heterocycles' multiply defined Label `Cookbook:clustering-molecules' multiply defined Label `Cookbook:d-functionality-in-the-rdkit' multiply defined Label `Cookbook:details' multiply defined Label `Cookbook:introduction' multiply defined Label `Cookbook:license' multiply defined Label `Cookbook:manipulating-molecules' multiply defined Label `Cookbook:miscellaneous-topics' multiply defined Label `Cookbook:neutralizing-charged-molecules' multiply defined Label `Cookbook:parallel-conformation-generation' multiply defined Label `Cookbook:rdkit-cookbook' multiply defined Label `Cookbook:rmsd-calculation-between-n-molecules' multiply defined Label `Cookbook:using-a-different-aromaticity-model' multiply defined Label `Cookbook:using-custom-mcs-atom-types' multiply defined Label `Cookbook:using-scikit-learn-with-rdkit' multiply defined Label `Cookbook:what-is-this' multiply defined Label `Install:advanced' multiply defined Label `Install:building-from-source' multiply defined Label `Install:building-from-the-command-line-recommended' multiply defined Label `Install:building-the-java-wrappers' multiply defined Label `Install:building-the-rdkit' multiply defined Label `Install:conda-forge-package' multiply defined Label `Install:cross-platform-under-anaconda-python-fastest-install' multiply defined Label `Install:disabling-the-python-wrappers' multiply defined Label `Install:extra-software-to-install' multiply defined Label `Install:fedora-centos-and-rhel' multiply defined Label `Install:frequently-encountered-problems' multiply defined Label `Install:how-to-build-from-source-with-conda' multiply defined Label `Install:how-to-get-conda' multiply defined Label `Install:how-to-install-rdkit-with-conda' multiply defined Label `Install:installation' multiply defined Label `Install:installation-from-repositories' multiply defined Label `Install:installation-from-source' multiply defined Label `Install:installation-of-rdkit-binaries' multiply defined Label `Install:installing-and-using-postgresql-and-the-rdkit-postgresql-cartridge-from-a-conda-environment' multiply defined Label `Install:installing-boost' multiply defined Label `Install:installing-prerequisites-from-source' multiply defined Label `Install:introduction-to-anaconda' multiply defined Label `Install:license' multiply defined Label `Install:linux-and-os-x' multiply defined Label `Install:linux-x86-64-python-3-environment' multiply defined Label `Install:macos-10-12-sierra-python-3-environment' multiply defined Label `Install:optional-packages' multiply defined Label `Install:os-x' multiply defined Label `Install:prerequisites' multiply defined Label `Install:recommended-extras' multiply defined Label `Install:setup-and-preparation' multiply defined Label `Install:specifying-an-alternate-boost-installation' multiply defined Label `Install:specifying-an-alternate-python-installation' multiply defined Label `Install:testing-the-build-optional-but-recommended' multiply defined Label `Install:ubuntu-12-04-and-later' multiply defined Label `Install:windows' multiply defined Label `Overview:an-overview-of-the-rdkit' multiply defined Label `Overview:footnotes' multiply defined Label `Overview:history' multiply defined Label `Overview:integration-with-other-open-source-projects' multiply defined Label `Overview:license' multiply defined Label `Overview:open-source-toolkit-for-cheminformatics' multiply defined Label `Overview:operational' multiply defined Label `Overview:the-contrib-directory' multiply defined Label `Overview:usage-by-other-open-source-projects' multiply defined Label `Overview:what-is-it' multiply defined Latexmk: Summary of warnings from last run of (pdf)latex: Latex found 114 multiply defined reference(s) === TeX engine is 'pdfTeX' Latexmk: All targets (RDKit.pdf) are up-to-date make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/Docs/Book/_build/latex' pdflatex finished; the PDF files are in _build/latex. make[2]: Leaving directory '/<>/rdkit-201809.1+dfsg/Docs/Book' make[1]: Leaving directory '/<>/rdkit-201809.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/rdkit-201809.1+dfsg' cp -r rdkit obj-*/ find /<>/rdkit-201809.1+dfsg -name rdchem.so /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/rdkit/Chem/rdchem.so #export RDBASE=/<>/rdkit-201809.1+dfsg PYTHONPATH=/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/ LD_LIBRARY_PATH="/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu//lib:" PYTHONPATH=/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/:/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu//rdkit/Chem/ LD_LIBRARY_PATH="/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu//lib:" dh_auto_test cd obj-i686-linux-gnu && make -j4 test ARGS\+=-j4 make[2]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu Start 1: testDict Start 2: testRDValue Start 3: testDataStructs Start 4: testFPB 1/142 Test #2: testRDValue ........................ Passed 0.01 sec Start 5: testMultiFPB 2/142 Test #3: testDataStructs .................... Passed 0.02 sec Start 6: pyBV 3/142 Test #4: testFPB ............................ Passed 0.03 sec Start 7: pyDiscreteValueVect 4/142 Test #5: testMultiFPB ....................... Passed 0.05 sec Start 8: pySparseIntVect 5/142 Test #7: pyDiscreteValueVect ................ Passed 0.20 sec Start 9: pyFPB 6/142 Test #8: pySparseIntVect .................... Passed 0.18 sec Start 10: testTransforms 7/142 Test #10: testTransforms ..................... Passed 0.01 sec Start 11: testGrid 8/142 Test #11: testGrid ........................... Passed 0.06 sec Start 12: testPyGeometry 9/142 Test #9: pyFPB .............................. Passed 0.17 sec Start 13: testMatrices 10/142 Test #13: testMatrices ....................... Passed 0.01 sec Start 14: testAlignment 11/142 Test #14: testAlignment ...................... Passed 0.01 sec Start 15: pyAlignment 12/142 Test #12: testPyGeometry ..................... Passed 0.24 sec Start 16: testOptimizer 13/142 Test #16: testOptimizer ...................... Passed 0.01 sec Start 17: testUFFForceField 14/142 Test #15: pyAlignment ........................ Passed 0.16 sec Start 18: testMMFFForceField 15/142 Test #17: testUFFForceField .................. Passed 0.21 sec Start 19: pyForceFieldConstraints 16/142 Test #6: pyBV ............................... Passed 1.79 sec Start 20: testDistGeom 17/142 Test #20: testDistGeom ....................... Passed 0.01 sec Start 21: pyDistGeom 18/142 Test #19: pyForceFieldConstraints ............***Failed 1.08 sec ...[21:41:27] **** Invariant Violation bad direction in linearSearch Violation occurred on line 234 in file /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.h Failed Expression: status >= 0 **** ......[21:41:28] **** Invariant Violation bad direction in linearSearch Violation occurred on line 234 in file /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.h Failed Expression: status >= 0 **** ..F ====================================================================== FAIL: testUFFTorsionConstraints (__main__.TestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/<>/rdkit-201809.1+dfsg/Code/ForceField/Wrap/testConstraints.py", line 194, in testUFFTorsionConstraints self.assertTrue(r == 0) AssertionError: False is not true ---------------------------------------------------------------------- Ran 12 tests in 0.843s FAILED (failures=1) Start 22: graphmolTest1 19/142 Test #21: pyDistGeom ......................... Passed 0.17 sec Start 23: graphmolcpTest 20/142 Test #23: graphmolcpTest ..................... Passed 0.05 sec Start 24: graphmolqueryTest 21/142 Test #24: graphmolqueryTest .................. Passed 0.05 sec Start 25: graphmolMolOpsTest 22/142 Test #1: testDict ........................... Passed 7.53 sec Start 26: graphmoltestCanon 23/142 Test #26: graphmoltestCanon .................. Passed 0.02 sec Start 27: graphmoltestChirality 24/142 Test #27: graphmoltestChirality .............. Passed 0.13 sec Start 28: graphmoltestPickler 25/142 Test #28: graphmoltestPickler ................ Passed 0.62 sec Start 29: graphmoltestPicklerGlobalSetting 26/142 Test #29: graphmoltestPicklerGlobalSetting ... Passed 0.05 sec Start 30: graphmolIterTest 27/142 Test #30: graphmolIterTest ................... Passed 0.05 sec Start 31: hanoiTest 28/142 Test #25: graphmolMolOpsTest ................. Passed 7.10 sec Start 32: graphmolMemTest1 29/142 Test #32: graphmolMemTest1 ................... Passed 0.01 sec Start 33: resMolSupplierTest 30/142 Test #33: resMolSupplierTest ................. Passed 2.10 sec Start 34: molBundleTest 31/142 Test #34: molBundleTest ...................... Passed 0.05 sec Start 35: test-valgrind 32/142 Test #35: test-valgrind ...................... Passed 0.05 sec Start 36: graphmolTestsCatch 33/142 Test #36: graphmolTestsCatch ................. Passed 0.06 sec Start 37: testDepictor 34/142 Test #37: testDepictor ....................... Passed 0.86 sec Start 38: pyDepictor 35/142 Test #38: pyDepictor ......................... Passed 0.78 sec Start 39: smiTest1 36/142 Test #39: smiTest1 ........................... Passed 0.07 sec Start 40: smiTest2 37/142 Test #40: smiTest2 ........................... Passed 0.02 sec Start 41: cxsmilesTest 38/142 Test #41: cxsmilesTest ....................... Passed 0.05 sec Start 42: smaTest1 39/142 Test #42: smaTest1 ........................... Passed 0.37 sec Start 43: smiTestCatch 40/142 Test #43: smiTestCatch ....................... Passed 0.07 sec Start 44: fileParsersTest1 41/142 Test #44: fileParsersTest1 ................... Passed 0.07 sec Start 45: testMolSupplier 42/142 Test #45: testMolSupplier .................... Passed 0.44 sec Start 46: testMolWriter 43/142 Test #46: testMolWriter ...................... Passed 0.73 sec Start 47: testTplParser 44/142 Test #47: testTplParser ...................... Passed 0.07 sec Start 48: testMol2ToMol 45/142 Test #48: testMol2ToMol ...................... Passed 0.09 sec Start 49: testSequence 46/142 Test #49: testSequence ....................... Passed 0.19 sec Start 50: testExtendedStereoParsing 47/142 Test #50: testExtendedStereoParsing .......... Passed 0.06 sec Start 51: fileParsersCatchTest 48/142 Test #51: fileParsersCatchTest ............... Passed 0.06 sec Start 52: testSubstructMatch 49/142 Test #52: testSubstructMatch ................. Passed 1.33 sec Start 53: testReaction 50/142 Test #53: testReaction ....................... Passed 0.51 sec Start 54: testReactionFingerprints 51/142 Test #54: testReactionFingerprints ........... Passed 0.08 sec Start 55: testEnumeration 52/142 Test #18: testMMFFForceField ................. Passed 38.94 sec Start 56: rxnTestCatch 53/142 Test #56: rxnTestCatch ....................... Passed 0.06 sec Start 57: pyChemReactions 54/142 Test #57: pyChemReactions .................... Passed 0.48 sec Start 58: pyChemReactionEnumerations 55/142 Test #58: pyChemReactionEnumerations ......... Passed 5.87 sec Start 59: pyChemReactionSanitize 56/142 Test #59: pyChemReactionSanitize ............. Passed 0.29 sec Start 60: testChemTransforms 57/142 Test #60: testChemTransforms ................. Passed 0.17 sec Start 61: testSubgraphs1 58/142 Test #61: testSubgraphs1 ..................... Passed 1.10 sec Start 62: testSubgraphs2 59/142 Test #62: testSubgraphs2 ..................... Passed 0.06 sec Start 63: filterCatalogTest 60/142 Test #63: filterCatalogTest .................. Passed 0.26 sec Start 64: pyFilterCatalog 61/142 Test #55: testEnumeration .................... Passed 34.41 sec Start 65: testFragCatalog 62/142 Test #64: pyFilterCatalog .................... Passed 5.58 sec Start 66: pyFragCatalog 63/142 Test #65: testFragCatalog .................... Passed 1.91 sec Start 67: testDescriptors 64/142 Test #66: pyFragCatalog ...................... Passed 0.38 sec Start 68: testAUTOCORR2D 65/142 Test #68: testAUTOCORR2D ..................... Passed 1.16 sec Start 69: pyMolDescriptors 66/142 Test #69: pyMolDescriptors ................... Passed 0.65 sec Start 70: pyMolDescriptors3D 67/142 Test #70: pyMolDescriptors3D ................. Passed 0.40 sec Start 71: testFingerprints 68/142 Test #67: testDescriptors .................... Passed 15.17 sec Start 72: testFingerprintGenerators 69/142 Test #72: testFingerprintGenerators .......... Passed 4.71 sec Start 73: pyTestGenerator 70/142 Test #73: pyTestGenerator .................... Passed 0.58 sec Start 74: testPartialCharges 71/142 Test #74: testPartialCharges ................. Passed 0.11 sec Start 75: pyPartialCharges 72/142 Test #75: pyPartialCharges ................... Passed 0.93 sec Start 76: testMolTransforms 73/142 Test #76: testMolTransforms .................. Passed 0.11 sec Start 77: pyMolTransforms 74/142 Test #77: pyMolTransforms .................... Passed 0.59 sec Start 78: testMMFFForceFieldHelpers 75/142 Test #71: testFingerprints ................... Passed 29.65 sec Start 79: testUFFForceFieldHelpers 76/142 Test #31: hanoiTest .......................... Passed 84.39 sec Start 80: testCrystalForceField 77/142 Test #80: testCrystalForceField .............. Passed 0.30 sec Start 81: pyForceFieldHelpers 78/142 Test #81: pyForceFieldHelpers ................ Passed 1.10 sec Start 82: testDistGeomHelpers 79/142 Test #78: testMMFFForceFieldHelpers .......... Passed 67.27 sec Start 83: pyDistGeomHelpers 80/142 Test #79: testUFFForceFieldHelpers ........... Passed 72.15 sec Start 84: testMolAlign 81/142 Test #22: graphmolTest1 ...................... Passed 156.10 sec Start 85: pyMolAlign 82/142 Test #85: pyMolAlign ......................... Passed 50.86 sec Start 86: testFeatures 83/142 Test #86: testFeatures ....................... Passed 0.15 sec Start 87: pyChemicalFeatures 84/142 Test #87: pyChemicalFeatures ................. Passed 0.76 sec Start 88: testShapeHelpers 85/142 Test #88: testShapeHelpers ................... Passed 0.15 sec Start 89: pyShapeHelpers 86/142 Test #89: pyShapeHelpers ..................... Passed 0.76 sec Start 90: testMolCatalog 87/142 Test #90: testMolCatalog ..................... Passed 0.11 sec Start 91: pyMolCatalog 88/142 Test #91: pyMolCatalog ....................... Passed 0.50 sec Start 92: moldraw2DTest1 89/142 Test #92: moldraw2DTest1 ..................... Passed 8.86 sec Start 93: moldraw2DRxnTest1 90/142 Test #93: moldraw2DRxnTest1 .................. Passed 0.21 sec Start 94: pyMolDraw2D 91/142 Test #94: pyMolDraw2D ........................ Passed 0.71 sec Start 95: testFMCS 92/142 Test #95: testFMCS ........................... Passed 3.59 sec Start 96: pyFMCS 93/142 Test #96: pyFMCS ............................. Passed 1.78 sec Start 97: FMCStest 94/142 Test #97: FMCStest ........................... Passed 0.02 sec Start 98: testMolHash 95/142 Test #98: testMolHash ........................ Passed 0.20 sec Start 99: pyMolHash 96/142 Test #99: pyMolHash .......................... Passed 0.19 sec Start 100: testMMPA 97/142 Test #100: testMMPA ........................... Passed 0.27 sec Start 101: pyMMPA 98/142 Test #101: pyMMPA ............................. Passed 3.78 sec Start 102: testStructChecker 99/142 Test #102: testStructChecker .................. Passed 0.39 sec Start 103: pyStructChecker 100/142 Test #103: pyStructChecker .................... Passed 0.36 sec Start 104: testReducedGraphs 101/142 Test #104: testReducedGraphs .................. Passed 0.14 sec Start 105: pyReducedGraphs 102/142 Test #105: pyReducedGraphs .................... Passed 0.49 sec Start 106: trajectoryTest 103/142 Test #106: trajectoryTest ..................... Passed 1.43 sec Start 107: substructLibraryTest 104/142 Test #107: substructLibraryTest ............... Passed 1.04 sec Start 108: pySubstructLibrary 105/142 Test #108: pySubstructLibrary ................. Passed 5.09 sec Start 109: testRGroupDecomp 106/142 Test #109: testRGroupDecomp ...................Child aborted***Exception: 0.77 sec [21:45:26] ******************************************************** [21:45:26] Testing R-Group Decomposition [21:45:26] ******************************************************** [21:45:26] test rgroup decomp symmetry matching [21:45:26] ******************************************************** [21:45:26] test rgroup decomp rgroup only matching [21:45:26] ******************************************************** [21:45:26] test rgroup decomp ring matching [21:45:26] ******************************************************** [21:45:26] test rgroup decomp full ring dummy core [21:45:26] ******************************************************** [21:45:26] test rgroup decomp full ring dummy core [21:45:26] ******************************************************** [21:45:26] test multi core [21:45:26] ******************************************************** [21:45:26] test Github #1550: Kekulization error from R-group decomposition [21:45:26] ******************************************************** [21:45:26] test remove sidechain Hs [21:45:26] WARNING: not removing hydrogen atom with only dummy atom neighbors [21:45:26] WARNING: not removing hydrogen atom with only dummy atom neighbors [21:45:26] WARNING: not removing hydrogen atom with only dummy atom neighbors [21:45:26] ******************************************************** [21:45:26] test preferring grouping non hydrogens over hydrogens if possible [21:45:26] **** Test Assert Expression Failed: Violation occurred on line 411 in file /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp Failed Expression: ss.str() == "Rgroup===Core\nOc1ccc([*:2])cc1[*:1]\nOc1ccc([*:2])cc1[*:1]\nOc1ccc([*:2])cc1[*:1]\nOc1ccc([*:2])cc1[*:1]\nOc1ccc([*:2])cc1[*:1]\nRgroup===R1\n[H][*:1]\nF[*:1]\nF[*:1]\nF[*:1]\nCl[*:1]\nRgroup===R2\n[H][*:2]\n[H][*:2]\n[H][*:2]\n[H]N([H])[*:2]\n[H][*:2]\n" **** terminate called after throwing an instance of 'Invar::Invariant' what(): Test Assert Start 110: pyRGroupDecomposition 107/142 Test #110: pyRGroupDecomposition .............. Passed 0.51 sec Start 111: molInterchangeTest1 108/142 Test #111: molInterchangeTest1 ................ Passed 0.06 sec Start 112: pyMolInterchange 109/142 Test #112: pyMolInterchange ................... Passed 0.23 sec Start 113: testSLNParse 110/142 Test #113: testSLNParse ....................... Passed 0.08 sec Start 114: pySLNParse 111/142 Test #114: pySLNParse ......................... Passed 0.23 sec Start 115: pyGraphMolWrap 112/142 Test #115: pyGraphMolWrap ..................... Passed 25.64 sec Start 116: pyTestConformerWrap 113/142 Test #116: pyTestConformerWrap ................ Passed 0.41 sec Start 117: pyTestTrajectory 114/142 Test #117: pyTestTrajectory ................... Passed 1.05 sec Start 118: pyTestThreads 115/142 Test #118: pyTestThreads ...................... Passed 0.38 sec Start 119: molStandardizeTest 116/142 Test #119: molStandardizeTest ................. Passed 0.65 sec Start 120: molNormalizeTest 117/142 Test #120: molNormalizeTest ................... Passed 0.09 sec Start 121: molValidateTest 118/142 Test #121: molValidateTest .................... Passed 0.12 sec Start 122: molChargeTest 119/142 Test #122: molChargeTest ...................... Passed 0.32 sec Start 123: molTautomerTest 120/142 Test #123: molTautomerTest .................... Passed 2.45 sec Start 124: molStandardizeSmallTest 121/142 Test #124: molStandardizeSmallTest ............ Passed 0.13 sec Start 125: molFragmentTest 122/142 Test #125: molFragmentTest .................... Passed 0.23 sec Start 126: pyMolStandardize 123/142 Test #126: pyMolStandardize ................... Passed 0.42 sec Start 127: testQuery 124/142 Test #127: testQuery .......................... Passed 0.00 sec Start 128: testMatCalc 125/142 Test #128: testMatCalc ........................ Passed 0.00 sec Start 129: pyMatCalc 126/142 Test #129: pyMatCalc .......................... Passed 2.21 sec Start 130: testSimDivPickers 127/142 Test #130: testSimDivPickers .................. Passed 0.02 sec Start 131: pySimDivPickers 128/142 Test #131: pySimDivPickers .................... Passed 0.90 sec Start 132: pyRanker 129/142 Test #132: pyRanker ........................... Passed 0.24 sec Start 133: testChemicalFeatures 130/142 Test #133: testChemicalFeatures ............... Passed 0.01 sec Start 134: pyFeatures 131/142 Test #134: pyFeatures ......................... Passed 0.20 sec Start 135: pythonTestDbCLI 132/142 Test #83: pyDistGeomHelpers .................. Passed 136.60 sec Start 136: pythonTestDirML 133/142 Test #136: pythonTestDirML .................... Passed 19.34 sec Start 137: pythonTestDirDataStructs 134/142 Test #137: pythonTestDirDataStructs ........... Passed 0.86 sec Start 138: pythonTestDirDbase 135/142 Test #138: pythonTestDirDbase ................. Passed 0.45 sec Start 139: pythonTestDirSimDivFilters 136/142 Test #139: pythonTestDirSimDivFilters ......... Passed 0.33 sec Start 140: pythonTestDirVLib 137/142 Test #140: pythonTestDirVLib .................. Passed 0.62 sec Start 141: pythonTestDirChem 138/142 Test #135: pythonTestDbCLI .................... Passed 31.22 sec Start 142: pythonTestSping 139/142 Test #142: pythonTestSping .................... Passed 0.63 sec 140/142 Test #82: testDistGeomHelpers ................ Passed 230.50 sec 141/142 Test #84: testMolAlign ....................... Passed 305.26 sec 142/142 Test #141: pythonTestDirChem ..................***Failed 231.17 sec ...... ---------------------------------------------------------------------- Ran 6 tests in 0.263s OK ...... ---------------------------------------------------------------------- Ran 6 tests in 0.128s OK ....[21:46:29] **** Pre-condition Violation valence not defined for atoms not associated with molecules Violation occurred on line 266 in file /<>/rdkit-201809.1+dfsg/Code/GraphMol/Atom.cpp Failed Expression: dp_mol **** . ---------------------------------------------------------------------- Ran 5 tests in 0.041s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.040s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.080s OK ...................... ---------------------------------------------------------------------- Ran 22 tests in 0.193s OK .....s.................ss ---------------------------------------------------------------------- Ran 25 tests in 0.278s OK (skipped=3) ..s ---------------------------------------------------------------------- Ran 3 tests in 0.447s OK (skipped=1) ................................... ---------------------------------------------------------------------- Ran 35 tests in 1.617s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.056s OK . ---------------------------------------------------------------------- Ran 1 test in 0.051s OK ....... ---------------------------------------------------------------------- Ran 7 tests in 0.116s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.157s OK .ss.ss....... ---------------------------------------------------------------------- Ran 13 tests in 3.013s OK (skipped=4) ........F...[21:47:51] WARNING: More than one matching pattern found - picking one [21:47:51] WARNING: More than one matching pattern found - picking one .[21:47:51] WARNING: More than one matching pattern found - picking one .. ====================================================================== FAIL: testEnumerateStereoisomersRandomSamplingShouldBeDeterministicAndPortable (__main__.TestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "UnitTestMol3D.py", line 218, in testEnumerateStereoisomersRandomSamplingShouldBeDeterministicAndPortable self.assertEqual(smiles, expected) AssertionError: Items in the first set but not the second: 'C/C(F)=C/[C@@H](Cl)/C=C(\\Br)[C@@H](N)I' 'C/C(F)=C\\[C@H](Cl)/C=C(\\Br)[C@@H](N)I' Items in the second set but not the first: 'C/C(F)=C/[C@@H](Cl)/C=C(/Br)[C@@H](N)I' 'C/C(F)=C/[C@H](Cl)/C=C(\\Br)[C@H](N)I' ---------------------------------------------------------------------- Ran 15 tests in 73.344s FAILED (failures=1) ........ ---------------------------------------------------------------------- Ran 8 tests in 0.298s OK ....[21:48:01] WARNING: not removing hydrogen atom without neighbors [21:48:01] WARNING: not removing hydrogen atom without neighbors [21:48:01] WARNING: not removing hydrogen atom without neighbors ....... ---------------------------------------------------------------------- Ran 11 tests in 8.509s OK .... ---------------------------------------------------------------------- Ran 4 tests in 3.326s OK ...... ---------------------------------------------------------------------- Ran 6 tests in 0.941s OK ...............s/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/rdkit/Chem/PandasTools.py:394: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. if (np.issubdtype(df.dtypes[dt], float) or np.issubdtype(df.dtypes[dt], int)) /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/rdkit/Chem/PandasTools.py:394: FutureWarning: Conversion of the second argument of issubdtype from `int` to `np.signedinteger` is deprecated. In future, it will be treated as `np.int32 == np.dtype(int).type`. if (np.issubdtype(df.dtypes[dt], float) or np.issubdtype(df.dtypes[dt], int)) ./<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/rdkit/Chem/PandasTools.py:414: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. if np.issubdtype(type(cell_value), float): ....... ---------------------------------------------------------------------- Ran 24 tests in 6.724s OK (skipped=1) .. ---------------------------------------------------------------------- Ran 2 tests in 0.000s OK UnitTestDocTestsChem.py:5: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead. from rdkit.Chem import MCS, FragmentMatcher, MACCSkeys, Descriptors, TemplateAlign F./<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/rdkit/Chem/MCS.py:1: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead. # This work was funded by Roche and generously donated to the free ............[21:48:48] WARNING: More than one matching pattern found - picking one [21:48:48] WARNING: More than one matching pattern found - picking one ........... ====================================================================== FAIL: EnumerateStereoisomers (rdkit.Chem.EnumerateStereoisomers) Doctest: rdkit.Chem.EnumerateStereoisomers.EnumerateStereoisomers ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/doctest.py", line 2226, in runTest raise self.failureException(self.format_failure(new.getvalue())) AssertionError: Failed doctest test for rdkit.Chem.EnumerateStereoisomers.EnumerateStereoisomers File "/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/rdkit/Chem/EnumerateStereoisomers.py", line 98, in EnumerateStereoisomers ---------------------------------------------------------------------- File "/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/rdkit/Chem/EnumerateStereoisomers.py", line 210, in rdkit.Chem.EnumerateStereoisomers.EnumerateStereoisomers Failed example: for smi in sorted(Chem.MolToSmiles(x, isomericSmiles=True) for x in isomers): print(smi) Expected: F[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)Br F[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)Br F[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)Br Got: F[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)Br F[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)Br F[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)[C@H](Cl)[C@H](Cl)[C@@H](Cl)Br ---------------------------------------------------------------------- Ran 25 tests in 33.375s FAILED (failures=1) .. ---------------------------------------------------------------------- Ran 2 tests in 0.265s OK ..s... ---------------------------------------------------------------------- Ran 6 tests in 2.451s OK (skipped=1) .[21:48:53] WARNING: not removing hydrogen atom without neighbors .[21:48:53] WARNING: not removing hydrogen atom without neighbors .[21:48:53] WARNING: no name column found on line 1 [21:48:53] WARNING: no name column found on line 2 [21:48:53] WARNING: no name column found on line 3 [21:48:53] WARNING: no name column found on line 4 [21:48:53] WARNING: no name column found on line 5 [21:48:53] WARNING: no name column found on line 6 [21:48:53] WARNING: no name column found on line 7 [21:48:53] WARNING: no name column found on line 8 [21:48:53] WARNING: no name column found on line 9 [21:48:53] WARNING: no name column found on line 10 [21:48:53] WARNING: no name column found on line 11 [21:48:53] WARNING: no name column found on line 12 [21:48:53] WARNING: no name column found on line 13 [21:48:53] WARNING: no name column found on line 14 [21:48:53] WARNING: no name column found on line 15 [21:48:53] WARNING: no name column found on line 16 [21:48:53] WARNING: no name column found on line 17 [21:48:53] WARNING: no name column found on line 18 [21:48:53] WARNING: no name column found on line 19 [21:48:53] WARNING: no name column found on line 20 [21:48:53] WARNING: no name column found on line 21 [21:48:53] WARNING: no name column found on line 22 [21:48:53] WARNING: no name column found on line 23 [21:48:53] WARNING: no name column found on line 24 [21:48:53] WARNING: no name column found on line 25 [21:48:53] WARNING: no name column found on line 26 [21:48:53] WARNING: no name column found on line 27 [21:48:53] WARNING: no name column found on line 28 [21:48:53] WARNING: no name column found on line 29 [21:48:53] WARNING: no name column found on line 30 [21:48:53] WARNING: no name column found on line 31 [21:48:53] WARNING: no name column found on line 32 [21:48:53] WARNING: no name column found on line 33 [21:48:53] WARNING: no name column found on line 34 [21:48:53] WARNING: no name column found on line 35 [21:48:53] WARNING: no name column found on line 36 [21:48:53] WARNING: no name column found on line 37 [21:48:53] WARNING: no name column found on line 38 [21:48:53] WARNING: no name column found on line 39 [21:48:53] WARNING: no name column found on line 40 [21:48:53] WARNING: no name column found on line 41 [21:48:53] WARNING: no name column found on line 42 [21:48:53] WARNING: no name column found on line 43 [21:48:53] WARNING: no name column found on line 44 [21:48:53] WARNING: no name column found on line 45 [21:48:53] WARNING: no name column found on line 46 [21:48:53] WARNING: no name column found on line 47 [21:48:53] WARNING: no name column found on line 48 [21:48:53] WARNING: no name column found on line 49 [21:48:53] WARNING: no name column found on line 50 [21:48:53] WARNING: no name column found on line 51 [21:48:53] WARNING: no name column found on line 52 [21:48:53] WARNING: no name column found on line 53 [21:48:53] WARNING: no name column found on line 54 [21:48:53] WARNING: no name column found on line 55 [21:48:53] WARNING: no name column found on line 56 [21:48:53] WARNING: no name column found on line 57 [21:48:53] WARNING: no name column found on line 58 [21:48:53] WARNING: no name column found on line 59 [21:48:53] WARNING: no name column found on line 60 [21:48:53] WARNING: no name column found on line 61 [21:48:53] WARNING: no name column found on line 62 [21:48:53] WARNING: no name column found on line 63 [21:48:53] WARNING: no name column found on line 64 [21:48:53] WARNING: no name column found on line 65 [21:48:53] WARNING: no name column found on line 66 [21:48:53] WARNING: no name column found on line 67 [21:48:53] WARNING: no name column found on line 68 [21:48:53] WARNING: no name column found on line 69 [21:48:53] WARNING: no name column found on line 70 [21:48:53] WARNING: no name column found on line 71 [21:48:53] WARNING: no name column found on line 72 [21:48:53] WARNING: no name column found on line 73 [21:48:53] WARNING: no name column found on line 74 [21:48:53] WARNING: no name column found on line 75 [21:48:53] WARNING: no name column found on line 76 [21:48:53] WARNING: no name column found on line 77 [21:48:53] WARNING: no name column found on line 78 [21:48:53] WARNING: no name column found on line 79 [21:48:53] WARNING: no name column found on line 80 [21:48:53] WARNING: no name column found on line 81 [21:48:53] WARNING: no name column found on line 82 [21:48:53] WARNING: no name column found on line 83 [21:48:53] WARNING: no name column found on line 84 [21:48:53] WARNING: no name column found on line 85 [21:48:53] WARNING: no name column found on line 86 [21:48:53] WARNING: no name column found on line 87 [21:48:53] WARNING: no name column found on line 88 [21:48:53] WARNING: no name column found on line 89 [21:48:53] WARNING: no name column found on line 90 [21:48:53] WARNING: no name column found on line 91 [21:48:53] WARNING: no name column found on line 92 [21:48:53] WARNING: no name column found on line 93 [21:48:53] WARNING: no name column found on line 94 [21:48:53] WARNING: no name column found on line 95 [21:48:53] WARNING: no name column found on line 96 [21:48:53] WARNING: no name column found on line 97 [21:48:53] WARNING: no name column found on line 98 [21:48:53] WARNING: no name column found on line 99 [21:48:53] WARNING: no name column found on line 100 [21:48:53] WARNING: no name column found on line 101 [21:48:53] WARNING: no name column found on line 102 [21:48:53] WARNING: no name column found on line 103 [21:48:53] WARNING: no name column found on line 104 [21:48:53] WARNING: no name column found on line 105 [21:48:53] WARNING: no name column found on line 106 [21:48:53] WARNING: no name column found on line 107 [21:48:53] WARNING: no name column found on line 108 [21:48:53] WARNING: no name column found on line 109 [21:48:53] WARNING: no name column found on line 110 [21:48:53] WARNING: no name column found on line 111 [21:48:53] WARNING: no name column found on line 112 [21:48:53] WARNING: no name column found on line 113 [21:48:53] WARNING: no name column found on line 114 [21:48:53] WARNING: no name column found on line 115 [21:48:53] WARNING: no name column found on line 116 [21:48:53] WARNING: no name column found on line 117 [21:48:53] WARNING: no name column found on line 118 [21:48:53] WARNING: no name column found on line 119 [21:48:53] WARNING: no name column found on line 120 [21:48:53] WARNING: no name column found on line 121 [21:48:53] WARNING: no name column found on line 122 [21:48:53] WARNING: no name column found on line 123 [21:48:53] WARNING: no name column found on line 124 [21:48:53] WARNING: no name column found on line 125 [21:48:53] WARNING: no name column found on line 126 [21:48:53] WARNING: no name column found on line 127 [21:48:53] WARNING: no name column found on line 128 [21:48:53] WARNING: no name column found on line 129 [21:48:53] WARNING: no name column found on line 130 [21:48:53] WARNING: no name column found on line 131 [21:48:53] WARNING: no name column found on line 132 [21:48:53] WARNING: no name column found on line 133 [21:48:53] WARNING: no name column found on line 134 [21:48:53] WARNING: no name column found on line 135 [21:48:53] WARNING: no name column found on line 136 [21:48:53] WARNING: no name column found on line 137 [21:48:53] WARNING: no name column found on line 138 [21:48:53] WARNING: no name column found on line 139 [21:48:53] WARNING: no name column found on line 140 [21:48:53] WARNING: no name column found on line 141 [21:48:53] WARNING: no name column found on line 142 [21:48:53] WARNING: no name column found on line 143 [21:48:53] WARNING: no name column found on line 144 [21:48:53] WARNING: no name column found on line 145 [21:48:53] WARNING: no name column found on line 146 [21:48:53] WARNING: no name column found on line 147 [21:48:53] WARNING: no name column found on line 148 [21:48:53] WARNING: no name column found on line 149 [21:48:53] WARNING: no name column found on line 150 [21:48:53] WARNING: no name column found on line 151 [21:48:53] WARNING: no name column found on line 152 [21:48:53] WARNING: no name column found on line 153 [21:48:53] WARNING: no name column found on line 154 [21:48:53] WARNING: no name column found on line 155 [21:48:53] WARNING: no name column found on line 156 [21:48:53] WARNING: no name column found on line 157 [21:48:53] WARNING: no name column found on line 158 [21:48:53] WARNING: no name column found on line 159 [21:48:53] WARNING: no name column found on line 160 [21:48:53] WARNING: no name column found on line 161 [21:48:53] WARNING: no name column found on line 162 [21:48:53] WARNING: no name column found on line 163 [21:48:53] WARNING: no name column found on line 164 [21:48:53] WARNING: no name column found on line 165 [21:48:53] WARNING: no name column found on line 166 [21:48:53] WARNING: no name column found on line 167 [21:48:53] WARNING: no name column found on line 168 [21:48:53] WARNING: no name column found on line 169 [21:48:53] WARNING: no name column found on line 170 [21:48:53] WARNING: no name column found on line 171 [21:48:53] WARNING: no name column found on line 172 [21:48:53] WARNING: no name column found on line 173 [21:48:53] WARNING: no name column found on line 174 [21:48:53] WARNING: no name column found on line 175 [21:48:53] WARNING: no name column found on line 176 [21:48:53] WARNING: no name column found on line 177 [21:48:53] WARNING: no name column found on line 178 [21:48:53] WARNING: no name column found on line 179 [21:48:53] WARNING: no name column found on line 180 [21:48:53] WARNING: no name column found on line 181 [21:48:53] WARNING: no name column found on line 182 [21:48:53] WARNING: no name column found on line 183 [21:48:53] WARNING: no name column found on line 184 [21:48:53] WARNING: no name column found on line 185 [21:48:53] WARNING: no name column found on line 186 [21:48:53] WARNING: no name column found on line 187 [21:48:53] WARNING: no name column found on line 188 [21:48:53] WARNING: no name column found on line 189 [21:48:53] WARNING: no name column found on line 190 [21:48:53] WARNING: no name column found on line 191 [21:48:53] WARNING: no name column found on line 192 [21:48:53] WARNING: no name column found on line 193 [21:48:53] WARNING: no name column found on line 194 [21:48:53] WARNING: no name column found on line 195 [21:48:53] WARNING: no name column found on line 196 [21:48:53] WARNING: no name column found on line 197 [21:48:53] WARNING: no name column found on line 198 [21:48:53] WARNING: no name column found on line 199 [21:48:53] WARNING: no name column found on line 200 [21:48:53] WARNING: no name column found on line 201 [21:48:53] WARNING: no name column found on line 202 [21:48:53] WARNING: no name column found on line 203 [21:48:53] WARNING: no name column found on line 204 [21:48:53] WARNING: no name column found on line 205 [21:48:53] WARNING: no name column found on line 206 [21:48:53] WARNING: no name column found on line 207 [21:48:53] WARNING: no name column found on line 208 [21:48:53] WARNING: no name column found on line 209 [21:48:53] WARNING: no name column found on line 210 [21:48:53] WARNING: no name column found on line 211 [21:48:53] WARNING: no name column found on line 212 [21:48:53] WARNING: no name column found on line 213 [21:48:53] WARNING: no name column found on line 214 [21:48:53] WARNING: no name column found on line 215 [21:48:53] WARNING: no name column found on line 216 ...... ---------------------------------------------------------------------- Ran 9 tests in 0.317s OK .................. ---------------------------------------------------------------------- Ran 18 tests in 2.292s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.237s OK ........ ---------------------------------------------------------------------- Ran 8 tests in 0.081s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.061s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.052s OK . ---------------------------------------------------------------------- Ran 1 test in 0.265s OK ........ ---------------------------------------------------------------------- Ran 8 tests in 0.002s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.005s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.003s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.007s OK ....... ---------------------------------------------------------------------- Ran 7 tests in 0.050s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.063s OK .... ---------------------------------------------------------------------- Ran 4 tests in 9.919s OK .......... ---------------------------------------------------------------------- Ran 10 tests in 0.126s OK . ---------------------------------------------------------------------- Ran 1 test in 0.000s OK .......... ---------------------------------------------------------------------- Ran 10 tests in 0.006s OK ..... ---------------------------------------------------------------------- Ran 5 tests in 0.184s OK ..................... ---------------------------------------------------------------------- Ran 21 tests in 18.443s OK . ---------------------------------------------------------------------- Ran 1 test in 0.000s OK ...[21:49:31] **** Pre-condition Violation molecule has no conformers Violation occurred on line 37 in file /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp Failed Expression: dp_mol->getNumConformers() **** . ---------------------------------------------------------------------- Ran 4 tests in 0.064s OK .. ---------------------------------------------------------------------- Ran 2 tests in 40.788s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.277s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.041s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.056s OK .....[21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors [21:50:15] WARNING: not removing hydrogen atom without neighbors ..... ---------------------------------------------------------------------- Ran 10 tests in 0.879s OK ssssss.....s..... ---------------------------------------------------------------------- Ran 17 tests in 0.320s OK (skipped=7) s ---------------------------------------------------------------------- Ran 1 test in 0.000s OK (skipped=1) .......... ---------------------------------------------------------------------- Ran 10 tests in 1.609s OK ..[21:50:18] SMARTS Parse Error: syntax error for input: 'boromicacid' [21:50:18] SMARTS Parse Error: syntax error for input: 'carboxylicacid,acidchlroide' [21:50:18] SMARTS Parse Error: syntax error for input: 'carboxyliccaid,acidchloride' [21:50:18] reaction has no reactants [21:50:18] reaction has no products [21:50:18] initialization failed [21:50:18] reaction has no reactants [21:50:18] reaction has no products . ---------------------------------------------------------------------- Ran 3 tests in 0.067s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.042s OK !!! TEST FAILURE: python UnitTestMol3D.py {} !!! TEST FAILURE: python UnitTestDocTestsChem.py {} 98% tests passed, 3 tests failed out of 142 Total Test time (real) = 532.54 sec The following tests FAILED: 19 - pyForceFieldConstraints (Failed) 109 - testRGroupDecomp (Child aborted) 141 - pythonTestDirChem (Failed) Errors while running CTest make[2]: *** [Makefile:144: test] Error 8 make[2]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' dh_auto_test: cd obj-i686-linux-gnu && make -j4 test ARGS\+=-j4 returned exit code 2 make[1]: [debian/rules:106: override_dh_auto_test] Error 2 (ignored) make[1]: Leaving directory '/<>/rdkit-201809.1+dfsg' fakeroot debian/rules binary-arch dh binary-arch --with python2 --buildsystem=cmake --parallel dh_testroot -a -O--buildsystem=cmake -O--parallel dh_prep -a -O--buildsystem=cmake -O--parallel dh_auto_install -a -O--buildsystem=cmake -O--parallel cd obj-i686-linux-gnu && make -j4 install DESTDIR=/<>/rdkit-201809.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/<>/rdkit-201809.1+dfsg -B/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/CMakeFiles /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/External/catch /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/catch /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/External/INCHI-API /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/INCHI-API /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /<>/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /<>/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py make[3]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 0%] Built target catch make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= [ 0%] Built target inchi_support make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 1%] Built target hc [ 3%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDBoost /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make 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make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 3%] Built target testRDValue make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend [ 4%] Built target testDict make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/EigenSolvers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= [ 4%] Built target RDBoost make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Catalogs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= [ 6%] Built target DataStructs make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Query /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Query /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 6%] Built target testMatrices make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend [ 7%] Built target EigenSolvers make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= [ 7%] Built target Catalogs make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend [ 8%] Built target testQuery make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/SimDivPickers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build [ 9%] Built target testMatCalc make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= [ 9%] Built target rdMetricMatrixCalc make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= [ 9%] Built target SimDivPickers make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= [ 9%] Built target Clustering make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build [ 10%] Built target InfoTheory make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend [ 10%] Built target rdBase make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DataStructs/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= [ 11%] Built target testDataStructs make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= [ 12%] Built target testFPB make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/SimDivPickers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 13%] Built target testMultiFPB make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 15%] Built target cDataStructs [ 16%] Built target RDGeometryLib make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ML/Data /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Data /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= [ 17%] Built target testSimDivPickers make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build [ 18%] Built target rdSimDivPickers make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 18%] Built target cQuantize make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= [ 18%] Built target rdInfoTheory make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 18%] Built target ChemicalFeatures make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Geometry/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build [ 19%] Built target testTransforms make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= [ 19%] Built target testGrid make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= [ 19%] Built target Alignment make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= [ 20%] Built target rdGeometry make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 20%] Built target testChemicalFeatures make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 20%] Built target testAlignment [ 25%] Built target GraphMol make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= [ 25%] Built target rdAlignment make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 25%] Built target MolTransforms make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= [ 25%] Built target Trajectory make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend [ 25%] Built target SubstructMatch make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= [ 27%] Built target SmilesParse make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 27%] Built target PartialCharges make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend [ 27%] Built target Subgraphs make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend [ 27%] Built target rdMolTransforms make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color= [ 28%] Built target ShapeHelpers make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build [ 29%] Built target MolCatalog make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend [ 29%] Built target MolInterchange [ 29%] Built target ReducedGraphs make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= [ 30%] Built target SLNParse make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build [ 30%] Built target rdtrajectory make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend [ 31%] Built target rdqueries make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= [ 31%] Built target rdChemicalFeatures make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= [ 32%] Built target Optimizer make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 33%] Built target Depictor make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build [ 34%] Built target graphmolqueryTest make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 34%] Built target graphmolcpTest make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build [ 34%] Built target graphmoltestCanon make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 34%] Built target graphmolMemTest1 make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= [ 35%] Built target graphmolIterTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 36%] Built target test-valgrind make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 37%] Built target ChemTransforms make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 37%] Built target smaTest1 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= [ 38%] Built target smiTest2 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= [ 39%] Built target FilterCatalog make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build [ 39%] Built target testSubgraphs1 make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend [ 41%] Built target Fingerprints make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= [ 42%] Built target testSubgraphs2 make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build [ 43%] Built target FragCatalog make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 43%] Built target testPartialCharges [ 44%] Built target rdPartialCharges make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= [ 45%] Built target MolChemicalFeatures make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 45%] Built target rdShapeHelpers make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend [ 45%] Built target rdReducedGraphs make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= [ 45%] Built target testReducedGraphs make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend [ 46%] Built target SubstructLibrary make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build [ 46%] Built target rdMolInterchange make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= [ 47%] Built target testSLNParse make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 48%] Built target rdSLNParse make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ForceField /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build [ 50%] Built target rdchem make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build [ 50%] Built target testOptimizer make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 54%] Built target ForceField make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= [ 54%] Built target rdFingerprintGenerator [ 57%] Built target FileParsers make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 58%] Built target rdMolChemicalFeatures make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 59%] Built target ForceFieldHelpers make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend [ 59%] Built target graphmolMolOpsTest make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend [ 59%] Built target graphmolTestsCatch make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build [ 59%] Built target graphmoltestPicklerGlobalSetting make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= [ 59%] Built target graphmoltestChirality make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= [ 60%] Built target graphmoltestPickler make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend [ 60%] Built target molBundleTest make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 60%] Built target hanoiTest make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= [ 61%] Built target resMolSupplierTest make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend [ 61%] Built target testDepictor make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build [ 61%] Built target rdDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target smiTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build [ 61%] Built target cxsmilesTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target smiTestCatch make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build [ 61%] Built target testMol2ToMol make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 61%] Built target testTplParser make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build [ 61%] Built target testMolWriter make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 62%] Built target testMolSupplier make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build [ 62%] Built target testSequence make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 62%] Built target testExtendedStereoParsing make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend [ 62%] Built target fileParsersTest1 make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= [ 63%] Built target fileParsersCatchTest make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build [ 63%] Built target testSubstructMatch make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 64%] Built target testChemTransforms make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 66%] Built target Descriptors make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build [ 66%] Built target filterCatalogTest make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend [ 67%] Built target rdfiltercatalog make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build [ 67%] Built target testFragCatalog make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 68%] Built target rdfragcatalog make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= [ 68%] Built target testAUTOCORR2D make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 68%] Built target testDescriptors make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build [ 68%] Built target rdMolDescriptors make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target testFingerprints [ 69%] Built target testFingerprintGenerators make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target testMolTransforms make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target rdForceFieldHelpers make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 69%] Built target testFeatures make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend [ 69%] Built target testMolCatalog make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= [ 70%] Built target rdMolCatalog make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build [ 70%] Built target FMCS make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend [ 71%] Built target MolHash [ 71%] Built target MMPA make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 73%] Built target StructChecker make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build [ 74%] Built target trajectoryTest make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend [ 74%] Built target substructLibraryTest make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= [ 74%] Built target rdSubstructLibrary make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ForceField/UFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/UFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build [ 74%] Built target RGroupDecomposition make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DistGeom /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 74%] Built target molInterchangeTest1 make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= [ 76%] Built target rdmolfiles make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ForceField/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= [ 76%] Built target testUFFForceField make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= [ 76%] Built target DistGeometry make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 76%] Built target MolAlign make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend [ 77%] Built target rdForceField make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= [ 78%] Built target graphmolTest1 make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Test /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 78%] Built target testFMCS make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend [ 78%] Built target rdFMCS make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend [ 81%] Built target ChemReactions make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= [ 82%] Built target FMCStest make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build [ 82%] Built target testMolHash make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= [ 83%] Built target rdMolHash [ 83%] Built target testMMPA make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= [ 84%] Built target rdMMPA make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build [ 84%] Built target testStructChecker make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend [ 84%] Built target rdStructChecker make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend [ 84%] Built target testRGroupDecomp make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DistGeom /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= [ 84%] Built target rdRGroupDecomposition make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 85%] Built target DistGeomHelpers make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= [ 85%] Built target testDistGeom make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= [ 89%] Built target MolStandardize make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build [ 89%] Built target DistGeom make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build [ 90%] Built target testReaction make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 90%] Built target testReactionFingerprints make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= [ 91%] Built target testEnumeration make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend [ 91%] Built target rxnTestCatch make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 92%] Built target rdChemReactions make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= [ 92%] Built target testMMFFForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= [ 92%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build [ 92%] Built target testCrystalForceField make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build [ 92%] Built target testDistGeomHelpers make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 93%] Built target testMolAlign make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build [ 94%] Built target rdDistGeom make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 94%] Built target rdMolAlign make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 94%] Built target testShapeHelpers make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 94%] Built target MolDraw2D make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= [ 95%] Built target molNormalizeTest make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build [ 95%] Built target molValidateTest make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color= [ 95%] Built target molStandardizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build [ 96%] Built target molChargeTest make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build [ 96%] Built target molStandardizeSmallTest make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/ForceField/MMFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/MMFF /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= [ 97%] Built target molTautomerTest make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build [ 97%] Built target molFragmentTest make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [ 98%] Built target testMMFFForceField make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= [ 99%] Built target rdMolStandardize make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' cd /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201809.1+dfsg /<>/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [100%] Built target moldraw2DTest1 make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build [100%] Built target moldraw2DRxnTest1 make[3]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'. make[3]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' [100%] Built target rdMolDraw2D [100%] Built target rdmolops make[2]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-targets-none.cmake -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-config.cmake -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-config-version.cmake -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Supply.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Output.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Transform.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Node.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/demo.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SDSupply.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesSupply.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmartsRemover.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesOutput.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/DbMolSupply.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Filter.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Avalon -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Avalon/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/psmetrics.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/latin1MetricsCache.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/pidPS.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/fontinfo.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pid.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pstests.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pstests.pyc -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pidtest.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pidtest.pyc -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/testallps.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/testallps.ps -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/colors.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/pidTK.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/README -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt4.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/formatted-strings.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/pidReportLab.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/stringformat.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/pidSVG.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfdoc.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pidPDF.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfmetrics.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfgen.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfgeom.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfutils.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/Fontmapping.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/pidPyart.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/utils.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pidPIL.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/metrics.dat -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm -- Installing: 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Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pil -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil -- 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/ClusterUtils.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clusters.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/murtagh_test.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Murtagh.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/ClusterVis.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Butina.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Standardize.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/__init__.py -- Installing: 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/GrowComposite.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/files.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/__init__.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/TopNContainer.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/HierarchyVis.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/LazySignature.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/BitEnsemble.py -- Installing: 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/bench2.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/patty_rules.txt -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/RLewis_smarts.txt -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Functional_Group_Hierarchy.txt -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/rddata.sql -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/RDData.sqlt -- Installing: 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test.cpp -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/CMakeLists.txt -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_list.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt -- Installing: 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/README -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/sascorer.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Glare -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Glare/README.txt -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Glare/glare.py -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/moe_like.dsc -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol -- Installing: 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/license.txt -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeneral.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeneral.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeneral.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Exceptions.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BadFileException.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Dict.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/FileParseException.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Invariant.h -- Installing: 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDBoost.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDBoost.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDBoost.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/Wrap.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/python.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/boost_numpy.h -- 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DatastructsException.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/FPBReader.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/MultiFPBReader.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeometryLib.so.1.2018.09.1 -- Installing: 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/<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/Matrix.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/SquareMatrix.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/SymmMatrix.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/Vector.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitAlignment.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitAlignment.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitAlignment.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitEigenSolvers.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitEigenSolvers.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitEigenSolvers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitOptimizer.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitOptimizer.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitOptimizer.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceField.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceField.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceField.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/Contrib.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/ForceField.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Params.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Params.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/ChiralSet.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/ChiralViolationContrib.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/DistViolationContrib.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/FourthDimContrib.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/Catalog.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/CatalogParams.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Atom.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/atomic_data.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/AtomIterators.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Bond.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/BondIterators.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Canon.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Chirality.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Conformer.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/details.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/GraphMol.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolOps.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolPickler.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryAtom.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryBond.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryOps.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RDKitBase.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Resonance.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RingInfo.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Rings.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ROMol.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RWMol.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SanitException.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StereoGroup.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/new_canon.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolBundle.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDepictor.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDepictor.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDepictor.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSmilesParse.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSmilesParse.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSmilesParse.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/primes.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructMatch.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructMatch.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructMatch.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemReactions.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemReactions.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemReactions.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemTransforms.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemTransforms.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemTransforms.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubgraphs.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubgraphs.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubgraphs.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDescriptors.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDescriptors.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDescriptors.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFingerprints.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFingerprints.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFingerprints.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolAlign.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolAlign.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolAlign.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolDraw2D.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolDraw2D.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolDraw2D.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFMCS.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFMCS.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFMCS.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Seed.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SeedSet.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MatchTable.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMMPA.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMMPA.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMMPA.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitStructChecker.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitStructChecker.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitStructChecker.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Utilites.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Pattern.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Stereo.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolInterchange.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolInterchange.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolInterchange.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSLNParse.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSLNParse.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSLNParse.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogEntry.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogParams.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogEntry.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogParams.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogEntry.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogParams.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogEntry.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogParams.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogUtils.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/AndQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/EqualityQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/GreaterQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/LessEqualQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/LessQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/OrQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/Query.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/QueryObjects.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/RangeQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/SetQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/XOrQuery.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Features/Feature.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSimDivPickers.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSimDivPickers.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSimDivPickers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKithc.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKithc.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKithc.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitInfoTheory.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitInfoTheory.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitInfoTheory.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemicalFeatures.so.1.2018.09.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemicalFeatures.so.1 -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemicalFeatures.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.so -- Installing: /<>/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDPaths.py make[1]: Leaving directory '/<>/rdkit-201809.1+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>/rdkit-201809.1+dfsg' dh_numpy dh_install --list-missing dh_install: Please use dh_missing --list-missing/--fail-missing instead dh_install: This feature will be removed in compat 12. dh_missing: usr/share/RDKit/README exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/license.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Scripts/create_deb_packages.sh exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Scripts/README.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Scripts/PythonFormat.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Scripts/FeatFinderCLI.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/RD.css exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.lrg.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo_plain.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Icon.ico exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/contents.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RD.css exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/index.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot3.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/MatchingPharmacophores.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingMolecules.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/GeneratingStructures.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/BuildingBoundsMatrix.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Index.hhk exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/References.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/EditingMolecules.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/MethodOverview.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot1.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhc exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D-Splash.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot2.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ExploringHits.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ViewOptions.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Using.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Intro.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/FDefFile.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot1.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/GettingStarted.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ScoringAlignments.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/FindingMappings.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ImproveAlignments.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot2.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingPoints.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/SavingResults.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/EnhancedStereo.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/CodingStandards.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/BackwardsIncompatibleChanges.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/GettingStartedInC++.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/index.rst exists in debian/tmp but is not installed to 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but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.ScaffoldTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.DSViewer.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.AnalyzeComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.aggCanvas.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.BuildComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.randomtest.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbReport.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Network.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.LazyGenerator.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.CrossValidate.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Trainers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.DecTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.canvasbase.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNClassificationModel.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.DistFunctions.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNRegressionModel.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.ID3.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdchem.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.PackageUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.six.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildQuantTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeVis.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.comhack.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.CompositeRun.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/mfp2_bit872.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_10.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/cdk2_mol1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/indole1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_3.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_rf.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_7.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_10.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_9.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_11.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_0.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_2.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_6.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_4.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_12.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/cdk2_mol2.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/rdk_bit1553_2.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/rdk_bit1553.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_8.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_charges.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_5.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example13.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example15.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example2.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example11.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example7.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example16.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example9.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example12.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/CMakeLists.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example10.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example3.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example14.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example5.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example8.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example4.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example6.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example1.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/compounds.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-config-version.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-targets-none.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-config.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-targets.cmake exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: librdkit-dev (47), librdkit1 (92), postgresql-11-rdkit (0), python-rdkit (1), rdkit-data (3), rdkit-doc (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed mkdir -p /<>/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ cp /<>/rdkit-201809.1+dfsg/Docs/Book/_build/latex/RDKit.pdf /<>/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ cp -a /<>/rdkit-201809.1+dfsg/Docs/Book/_build/html /<>/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ pg_buildext install /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v postgresql-%v-rdkit ### install 11 ### make[2]: Entering directory '/<>/rdkit-201809.1+dfsg/build-11' /bin/mkdir -p '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib' /bin/mkdir -p '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension' /bin/mkdir -p '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension' /usr/bin/install -c -m 755 rdkit.so '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/rdkit.so' /usr/bin/install -c -m 644 /<>/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit.control '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension/' /usr/bin/install -c -m 644 rdkit--3.7.sql '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension/' /bin/mkdir -p '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode/rdkit' /bin/mkdir -p '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/ /usr/bin/install -c -m 644 rdkit_io.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 mol_op.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_op.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 sfp_op.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 rxn_op.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 rdkit_gist.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_gist.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_gin.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 low_gist.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 guc.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 cache.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 adapter.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bitstring.bc '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ cd '/<>/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode' && /usr/lib/llvm-7/bin/llvm-lto -thinlto -thinlto-action=thinlink -o rdkit.index.bc rdkit/rdkit_io.bc rdkit/mol_op.bc rdkit/bfp_op.bc rdkit/sfp_op.bc rdkit/rxn_op.bc rdkit/rdkit_gist.bc rdkit/bfp_gist.bc rdkit/bfp_gin.bc rdkit/low_gist.bc rdkit/guc.bc rdkit/cache.bc rdkit/adapter.bc rdkit/bitstring.bc make[2]: Leaving directory '/<>/rdkit-201809.1+dfsg/build-11' make[1]: Leaving directory '/<>/rdkit-201809.1+dfsg' dh_installdocs -a -O--buildsystem=cmake -O--parallel debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/rdkit-201809.1+dfsg' dh_installchangelogs ReleaseNotes.md make[1]: Leaving directory '/<>/rdkit-201809.1+dfsg' debian/rules override_dh_python2 make[1]: Entering directory '/<>/rdkit-201809.1+dfsg' dh_python2 -ppython-rdkit I: dh_python2 fs:329: renaming rdBase.so to rdBase.i386-linux-gnu.so /usr/share/dh-python/dh_python2:67: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead 'libpython%s: %s', so_version, fn) W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdBase.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdGeometry.so to rdGeometry.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdGeometry.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdSimDivPickers.so to rdSimDivPickers.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSimDivPickers.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdAlignment.so to rdAlignment.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdAlignment.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdChemReactions.so to rdChemReactions.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemReactions.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdChemicalFeatures.so to rdChemicalFeatures.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemicalFeatures.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdDepictor.so to rdDepictor.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDepictor.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdDistGeom.so to rdDistGeom.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDistGeom.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdFMCS.so to rdFMCS.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdFMCS.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdFingerprintGenerator.so to rdFingerprintGenerator.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdFingerprintGenerator.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdForceFieldHelpers.so to rdForceFieldHelpers.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceFieldHelpers.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMMPA.so to rdMMPA.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMMPA.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolAlign.so to rdMolAlign.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolAlign.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolCatalog.so to rdMolCatalog.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolCatalog.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolChemicalFeatures.so to rdMolChemicalFeatures.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolChemicalFeatures.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolDescriptors.so to rdMolDescriptors.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDescriptors.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolHash.so to rdMolHash.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolHash.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolInterchange.so to rdMolInterchange.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolInterchange.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolTransforms.so to rdMolTransforms.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolTransforms.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdPartialCharges.so to rdPartialCharges.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdPartialCharges.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdRGroupDecomposition.so to rdRGroupDecomposition.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdRGroupDecomposition.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdReducedGraphs.so to rdReducedGraphs.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdReducedGraphs.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdSLNParse.so to rdSLNParse.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSLNParse.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdShapeHelpers.so to rdShapeHelpers.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdShapeHelpers.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdStructChecker.so to rdStructChecker.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdStructChecker.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdSubstructLibrary.so to rdSubstructLibrary.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSubstructLibrary.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdchem.so to rdchem.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdchem.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdfiltercatalog.so to rdfiltercatalog.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfiltercatalog.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdfragcatalog.so to rdfragcatalog.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfragcatalog.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdmolfiles.so to rdmolfiles.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolfiles.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdmolops.so to rdmolops.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolops.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdqueries.so to rdqueries.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdqueries.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdtrajectory.so to rdtrajectory.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdtrajectory.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolStandardize.so to rdMolStandardize.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolStandardize.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMolDraw2D.so to rdMolDraw2D.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDraw2D.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdMetricMatrixCalc.so to rdMetricMatrixCalc.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMetricMatrixCalc.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdForceField.so to rdForceField.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceField.i386-linux-gnu.so I: dh_python2 fs:329: renaming rdInfoTheory.so to rdInfoTheory.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdInfoTheory.i386-linux-gnu.so I: dh_python2 fs:329: renaming cQuantize.so to cQuantize.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cQuantize.i386-linux-gnu.so I: dh_python2 fs:329: renaming Clustering.so to Clustering.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: Clustering.i386-linux-gnu.so I: dh_python2 fs:329: renaming DistGeom.so to DistGeom.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: DistGeom.i386-linux-gnu.so I: dh_python2 fs:329: renaming cDataStructs.so to cDataStructs.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cDataStructs.i386-linux-gnu.so dh_numpy -ppython-rdkit make[1]: Leaving directory '/<>/rdkit-201809.1+dfsg' dh_installinit -a -O--buildsystem=cmake -O--parallel dh_lintian -a -O--buildsystem=cmake -O--parallel dh_perl -a -O--buildsystem=cmake -O--parallel dh_link -a -O--buildsystem=cmake -O--parallel dh_strip_nondeterminism -a -O--buildsystem=cmake -O--parallel dh_compress -a -O--buildsystem=cmake -O--parallel dh_fixperms -a -O--buildsystem=cmake -O--parallel dh_missing -a -O--buildsystem=cmake -O--parallel dh_strip -a -O--buildsystem=cmake -O--parallel dh_makeshlibs -a -O--buildsystem=cmake -O--parallel dh_shlibdeps -a -O--buildsystem=cmake -O--parallel dh_installdeb -a -O--buildsystem=cmake -O--parallel dh_gencontrol -a -O--buildsystem=cmake -O--parallel dpkg-gencontrol: warning: Depends field of package librdkit-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package librdkit1: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit-dev: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit1: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=cmake -O--parallel dh_builddeb -a -O--buildsystem=cmake -O--parallel INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing librdkit1 (in debian/librdkit1); do_strip: , oemstrip: pkgstriptranslations: processing python-rdkit (in debian/python-rdkit); do_strip: , oemstrip: pkgstriptranslations: processing librdkit-dev (in debian/librdkit-dev); do_strip: , oemstrip: pkgstriptranslations: processing postgresql-11-rdkit-dbgsym (in debian/.debhelper/postgresql-11-rdkit/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librdkit-dev/DEBIAN/control, package librdkit-dev, directory debian/librdkit-dev .. removing usr/share/doc/librdkit-dev/changelog.gz pkgstripfiles: processing control file: debian/python-rdkit/DEBIAN/control, package python-rdkit, directory debian/python-rdkit INFO: pkgstripfiles: waiting for lock (librdkit-dev) ... .. removing usr/share/doc/python-rdkit/changelog.gz Searching for duplicated docs in dependency librdkit1... pkgstripfiles: processing control file: debian/.debhelper/postgresql-11-rdkit/dbgsym-root/DEBIAN/control, package postgresql-11-rdkit-dbgsym, directory debian/.debhelper/postgresql-11-rdkit/dbgsym-root dpkg-deb: building package 'postgresql-11-rdkit-dbgsym' in 'debian/.debhelper/scratch-space/build-postgresql-11-rdkit/postgresql-11-rdkit-dbgsym_201809.1+dfsg-6_i386.deb'. symlinking changelog.Debian.gz in python-rdkit to file in librdkit1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-rdkit ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-rdkit' in '../python-rdkit_201809.1+dfsg-6_i386.deb'. Renaming postgresql-11-rdkit-dbgsym_201809.1+dfsg-6_i386.deb to postgresql-11-rdkit-dbgsym_201809.1+dfsg-6_i386.ddeb INFO: pkgstripfiles: waiting for lock (librdkit-dev) ... INFO: pkgstripfiles: waiting for lock (librdkit-dev) ... INFO: pkgstripfiles: waiting for lock (librdkit-dev) ... INFO: pkgstripfiles: waiting for lock (librdkit-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librdkit1/DEBIAN/control, package librdkit1, directory debian/librdkit1 .. removing usr/share/doc/librdkit1/changelog.gz INFO: pkgstripfiles: waiting for lock (librdkit-dev) ... pkgstripfiles: Truncating usr/share/doc/librdkit1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package librdkit1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librdkit1' in '../librdkit1_201809.1+dfsg-6_i386.deb'. Searching for duplicated docs in dependency librdkit1... symlinking changelog.Debian.gz in librdkit-dev to file in librdkit1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package librdkit-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librdkit-dev' in '../librdkit-dev_201809.1+dfsg-6_i386.deb'. INFO: pkgstriptranslations version 143 pkgstriptranslations: processing postgresql-11-rdkit (in debian/postgresql-11-rdkit); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/postgresql-11-rdkit/DEBIAN/control, package postgresql-11-rdkit, directory debian/postgresql-11-rdkit .. removing usr/share/doc/postgresql-11-rdkit/changelog.gz Searching for duplicated docs in dependency librdkit1... symlinking changelog.Debian.gz in postgresql-11-rdkit to file in librdkit1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package postgresql-11-rdkit ... pkgstripfiles: No PNG files. dpkg-deb: building package 'postgresql-11-rdkit' in '../postgresql-11-rdkit_201809.1+dfsg-6_i386.deb'. INFO: pkgstriptranslations version 143 pkgstriptranslations: processing python-rdkit-dbgsym (in debian/.debhelper/python-rdkit/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python-rdkit/dbgsym-root/DEBIAN/control, package python-rdkit-dbgsym, directory debian/.debhelper/python-rdkit/dbgsym-root dpkg-deb: building package 'python-rdkit-dbgsym' in 'debian/.debhelper/scratch-space/build-python-rdkit/python-rdkit-dbgsym_201809.1+dfsg-6_i386.deb'. INFO: pkgstriptranslations version 143 pkgstriptranslations: processing librdkit1-dbgsym (in debian/.debhelper/librdkit1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/librdkit1/dbgsym-root/DEBIAN/control, package librdkit1-dbgsym, directory debian/.debhelper/librdkit1/dbgsym-root dpkg-deb: building package 'librdkit1-dbgsym' in 'debian/.debhelper/scratch-space/build-librdkit1/librdkit1-dbgsym_201809.1+dfsg-6_i386.deb'. Renaming python-rdkit-dbgsym_201809.1+dfsg-6_i386.deb to python-rdkit-dbgsym_201809.1+dfsg-6_i386.ddeb Renaming librdkit1-dbgsym_201809.1+dfsg-6_i386.deb to librdkit1-dbgsym_201809.1+dfsg-6_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../rdkit_201809.1+dfsg-6_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190201-2152 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ rdkit_201809.1+dfsg-6_i386.changes: ----------------------------------- Format: 1.8 Date: Thu, 31 Jan 2019 14:20:27 +0100 Source: rdkit Binary: python-rdkit rdkit-doc rdkit-data librdkit1 librdkit-dev postgresql-11-rdkit Architecture: i386 Version: 201809.1+dfsg-6 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael Banck Description: librdkit-dev - Collection of cheminformatics and machine-learning software (deve librdkit1 - Collection of cheminformatics and machine-learning software (shar postgresql-11-rdkit - Cheminformatics and machine-learning software (PostgreSQL Cartrid python-rdkit - Collection of cheminformatics and machine-learning software rdkit-data - Collection of cheminformatics and machine-learning software (data rdkit-doc - Collection of cheminformatics and machine-learning software (docu Changes: rdkit (201809.1+dfsg-6) unstable; urgency=medium . * debian/patches/fix_coordgen_include_path.patch: New patch, fixes the include path for system-installed coordgen headers. 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Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan algorithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. . This package contains the header files. drwxr-xr-x root/root 0 2019-01-31 13:20 ./ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/Catalogs/ -rw-r--r-- root/root 16620 2018-10-22 02:29 ./usr/include/rdkit/Catalogs/Catalog.h -rw-r--r-- root/root 1361 2018-10-22 02:29 ./usr/include/rdkit/Catalogs/CatalogEntry.h -rw-r--r-- root/root 1221 2018-10-22 02:29 ./usr/include/rdkit/Catalogs/CatalogParams.h drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/ChemicalFeatures/ -rw-r--r-- root/root 1021 2018-10-22 02:29 ./usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -rw-r--r-- root/root 2814 2018-10-22 02:29 ./usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/DataManip/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/DataManip/MetricMatrixCalc/ -rw-r--r-- root/root 1841 2018-10-22 02:29 ./usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -rw-r--r-- root/root 3506 2018-10-22 02:29 ./usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/DataStructs/ -rw-r--r-- root/root 10600 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/BitOps.h -rw-r--r-- root/root 2509 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/BitVect.h -rw-r--r-- root/root 1115 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/BitVectUtils.h -rw-r--r-- root/root 584 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/BitVects.h -rw-r--r-- root/root 841 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/DatastructsException.h -rw-r--r-- root/root 844 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/DiscreteDistMat.h -rw-r--r-- root/root 4414 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/DiscreteValueVect.h -rw-r--r-- root/root 3242 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/ExplicitBitVect.h -rw-r--r-- root/root 9603 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/FPBReader.h -rw-r--r-- root/root 7646 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/MultiFPBReader.h -rw-r--r-- root/root 3013 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/SparseBitVect.h -rw-r--r-- root/root 16359 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/SparseIntVect.h -rw-r--r-- root/root 1252 2018-10-22 02:29 ./usr/include/rdkit/DataStructs/base64.h drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/DistGeom/ -rw-r--r-- root/root 3429 2018-10-22 02:29 ./usr/include/rdkit/DistGeom/BoundsMatrix.h -rw-r--r-- root/root 1630 2018-10-22 02:29 ./usr/include/rdkit/DistGeom/ChiralSet.h -rw-r--r-- root/root 3549 2018-10-22 02:29 ./usr/include/rdkit/DistGeom/ChiralViolationContrib.h -rw-r--r-- root/root 7992 2018-10-22 02:29 ./usr/include/rdkit/DistGeom/DistGeomUtils.h -rw-r--r-- root/root 1825 2018-10-22 02:29 ./usr/include/rdkit/DistGeom/DistViolationContrib.h -rw-r--r-- root/root 1979 2018-10-22 02:29 ./usr/include/rdkit/DistGeom/FourthDimContrib.h -rw-r--r-- root/root 1183 2018-10-22 02:29 ./usr/include/rdkit/DistGeom/TriangleSmooth.h drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/Features/ -rw-r--r-- root/root 2888 2018-10-22 02:29 ./usr/include/rdkit/Features/Feature.h drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/ForceField/ -rw-r--r-- root/root 1100 2018-10-22 02:29 ./usr/include/rdkit/ForceField/Contrib.h -rw-r--r-- root/root 7723 2018-10-22 02:29 ./usr/include/rdkit/ForceField/ForceField.h drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/include/rdkit/ForceField/MMFF/ -rw-r--r-- root/root 2557 2018-10-22 02:29 ./usr/include/rdkit/ForceField/MMFF/AngleBend.h -rw-r--r-- root/root 2119 2018-10-22 02:29 ./usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -rw-r--r-- root/root 2126 2018-10-22 02:29 ./usr/include/rdkit/ForceField/MMFF/BondStretch.h -rw-r--r-- 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root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitCatalogs.so -> libRDKitCatalogs.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitChemReactions.so -> libRDKitChemReactions.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitChemTransforms.so -> libRDKitChemTransforms.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitChemicalFeatures.so -> libRDKitChemicalFeatures.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDataStructs.so -> libRDKitDataStructs.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDepictor.so -> libRDKitDepictor.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDescriptors.so -> libRDKitDescriptors.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDistGeomHelpers.so -> libRDKitDistGeomHelpers.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDistGeometry.so -> libRDKitDistGeometry.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitEigenSolvers.so -> libRDKitEigenSolvers.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFMCS.so -> libRDKitFMCS.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFileParsers.so -> libRDKitFileParsers.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFilterCatalog.so -> libRDKitFilterCatalog.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFingerprints.so -> libRDKitFingerprints.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitForceField.so -> libRDKitForceField.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitForceFieldHelpers.so -> libRDKitForceFieldHelpers.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFragCatalog.so -> libRDKitFragCatalog.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitGraphMol.so -> libRDKitGraphMol.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitInfoTheory.so -> libRDKitInfoTheory.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMMPA.so -> libRDKitMMPA.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolAlign.so -> libRDKitMolAlign.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolCatalog.so -> libRDKitMolCatalog.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolChemicalFeatures.so -> libRDKitMolChemicalFeatures.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolDraw2D.so -> libRDKitMolDraw2D.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolHash.so -> libRDKitMolHash.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolInterchange.so -> libRDKitMolInterchange.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolStandardize.so -> libRDKitMolStandardize.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolTransforms.so -> libRDKitMolTransforms.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitOptimizer.so -> libRDKitOptimizer.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 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root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitStructChecker.so -> libRDKitStructChecker.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSubgraphs.so -> libRDKitSubgraphs.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSubstructLibrary.so -> libRDKitSubstructLibrary.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSubstructMatch.so -> libRDKitSubstructMatch.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitTrajectory.so -> libRDKitTrajectory.so.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKithc.so -> libRDKithc.so.1 drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/doc/librdkit-dev/ lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/share/doc/librdkit-dev/changelog.Debian.gz -> ../librdkit1/changelog.Debian.gz -rw-r--r-- root/root 6729 2019-01-08 20:22 ./usr/share/doc/librdkit-dev/copyright librdkit1_201809.1+dfsg-6_i386.deb ---------------------------------- new debian package, version 2.0. size 2823172 bytes: control archive=2884 bytes. 1746 bytes, 38 lines control 3769 bytes, 49 lines md5sums 1481 bytes, 46 lines shlibs 70 bytes, 2 lines triggers Package: librdkit1 Source: rdkit Version: 201809.1+dfsg-6 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 12040 Depends: libboost-python1.67.0, libboost-serialization1.67.0, libc6 (>= 2.4), libgcc1 (>= 1:4.2), libpython2.7 (>= 2.7), libschroedinger-coordgenlibs1, libschroedinger-maeparser1, libstdc++6 (>= 7) Section: libs Priority: optional Homepage: http://www.rdkit.org Description: Collection of cheminformatics and machine-learning software (shared libraries) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan algorithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. . This package contains the shared libraries. drwxr-xr-x root/root 0 2019-01-31 13:20 ./ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/ lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitAlignment.so.1 -> libRDKitAlignment.so.1.2018.09.1 -rw-r--r-- root/root 34348 2019-01-31 13:20 ./usr/lib/libRDKitAlignment.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitCatalogs.so.1 -> libRDKitCatalogs.so.1.2018.09.1 -rw-r--r-- root/root 13692 2019-01-31 13:20 ./usr/lib/libRDKitCatalogs.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitChemReactions.so.1 -> libRDKitChemReactions.so.1.2018.09.1 -rw-r--r-- root/root 932292 2019-01-31 13:20 ./usr/lib/libRDKitChemReactions.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitChemTransforms.so.1 -> libRDKitChemTransforms.so.1.2018.09.1 -rw-r--r-- root/root 235504 2019-01-31 13:20 ./usr/lib/libRDKitChemTransforms.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitChemicalFeatures.so.1 -> libRDKitChemicalFeatures.so.1.2018.09.1 -rw-r--r-- root/root 17880 2019-01-31 13:20 ./usr/lib/libRDKitChemicalFeatures.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDataStructs.so.1 -> libRDKitDataStructs.so.1.2018.09.1 -rw-r--r-- root/root 288536 2019-01-31 13:20 ./usr/lib/libRDKitDataStructs.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDepictor.so.1 -> libRDKitDepictor.so.1.2018.09.1 -rw-r--r-- root/root 239620 2019-01-31 13:20 ./usr/lib/libRDKitDepictor.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDescriptors.so.1 -> libRDKitDescriptors.so.1.2018.09.1 -rw-r--r-- root/root 376024 2019-01-31 13:20 ./usr/lib/libRDKitDescriptors.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDistGeomHelpers.so.1 -> libRDKitDistGeomHelpers.so.1.2018.09.1 -rw-r--r-- root/root 219080 2019-01-31 13:20 ./usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitDistGeometry.so.1 -> libRDKitDistGeometry.so.1.2018.09.1 -rw-r--r-- root/root 149116 2019-01-31 13:20 ./usr/lib/libRDKitDistGeometry.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitEigenSolvers.so.1 -> libRDKitEigenSolvers.so.1.2018.09.1 -rw-r--r-- root/root 30244 2019-01-31 13:20 ./usr/lib/libRDKitEigenSolvers.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFMCS.so.1 -> libRDKitFMCS.so.1.2018.09.1 -rw-r--r-- root/root 288628 2019-01-31 13:20 ./usr/lib/libRDKitFMCS.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFileParsers.so.1 -> libRDKitFileParsers.so.1.2018.09.1 -rw-r--r-- root/root 1182776 2019-01-31 13:20 ./usr/lib/libRDKitFileParsers.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFilterCatalog.so.1 -> libRDKitFilterCatalog.so.1.2018.09.1 -rw-r--r-- root/root 784296 2019-01-31 13:20 ./usr/lib/libRDKitFilterCatalog.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFingerprints.so.1 -> libRDKitFingerprints.so.1.2018.09.1 -rw-r--r-- root/root 419784 2019-01-31 13:20 ./usr/lib/libRDKitFingerprints.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitForceField.so.1 -> libRDKitForceField.so.1.2018.09.1 -rw-r--r-- root/root 796376 2019-01-31 13:20 ./usr/lib/libRDKitForceField.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitForceFieldHelpers.so.1 -> libRDKitForceFieldHelpers.so.1.2018.09.1 -rw-r--r-- root/root 411824 2019-01-31 13:20 ./usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitFragCatalog.so.1 -> libRDKitFragCatalog.so.1.2018.09.1 -rw-r--r-- root/root 177964 2019-01-31 13:20 ./usr/lib/libRDKitFragCatalog.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitGraphMol.so.1 -> libRDKitGraphMol.so.1.2018.09.1 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root/root 141056 2019-01-31 13:20 ./usr/lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolDraw2D.so.1 -> libRDKitMolDraw2D.so.1.2018.09.1 -rw-r--r-- root/root 395372 2019-01-31 13:20 ./usr/lib/libRDKitMolDraw2D.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolHash.so.1 -> libRDKitMolHash.so.1.2018.09.1 -rw-r--r-- root/root 112300 2019-01-31 13:20 ./usr/lib/libRDKitMolHash.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolInterchange.so.1 -> libRDKitMolInterchange.so.1.2018.09.1 -rw-r--r-- root/root 231168 2019-01-31 13:20 ./usr/lib/libRDKitMolInterchange.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolStandardize.so.1 -> libRDKitMolStandardize.so.1.2018.09.1 -rw-r--r-- root/root 481168 2019-01-31 13:20 ./usr/lib/libRDKitMolStandardize.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitMolTransforms.so.1 -> libRDKitMolTransforms.so.1.2018.09.1 -rw-r--r-- root/root 79552 2019-01-31 13:20 ./usr/lib/libRDKitMolTransforms.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitOptimizer.so.1 -> libRDKitOptimizer.so.1.2018.09.1 -rw-r--r-- root/root 13588 2019-01-31 13:20 ./usr/lib/libRDKitOptimizer.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitPartialCharges.so.1 -> libRDKitPartialCharges.so.1.2018.09.1 -rw-r--r-- root/root 79564 2019-01-31 13:20 ./usr/lib/libRDKitPartialCharges.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitRDBoost.so.1 -> libRDKitRDBoost.so.1.2018.09.1 -rw-r--r-- root/root 13744 2019-01-31 13:20 ./usr/lib/libRDKitRDBoost.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitRDGeneral.so.1 -> libRDKitRDGeneral.so.1.2018.09.1 -rw-r--r-- root/root 104100 2019-01-31 13:20 ./usr/lib/libRDKitRDGeneral.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitRDGeometryLib.so.1 -> libRDKitRDGeometryLib.so.1.2018.09.1 -rw-r--r-- root/root 132812 2019-01-31 13:20 ./usr/lib/libRDKitRDGeometryLib.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitRGroupDecomposition.so.1 -> libRDKitRGroupDecomposition.so.1.2018.09.1 -rw-r--r-- root/root 161540 2019-01-31 13:20 ./usr/lib/libRDKitRGroupDecomposition.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitReducedGraphs.so.1 -> libRDKitReducedGraphs.so.1.2018.09.1 -rw-r--r-- root/root 79564 2019-01-31 13:20 ./usr/lib/libRDKitReducedGraphs.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSLNParse.so.1 -> libRDKitSLNParse.so.1.2018.09.1 -rw-r--r-- root/root 359016 2019-01-31 13:20 ./usr/lib/libRDKitSLNParse.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitShapeHelpers.so.1 -> libRDKitShapeHelpers.so.1.2018.09.1 -rw-r--r-- root/root 26184 2019-01-31 13:20 ./usr/lib/libRDKitShapeHelpers.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSimDivPickers.so.1 -> libRDKitSimDivPickers.so.1.2018.09.1 -rw-r--r-- root/root 30228 2019-01-31 13:20 ./usr/lib/libRDKitSimDivPickers.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSmilesParse.so.1 -> libRDKitSmilesParse.so.1.2018.09.1 -rw-r--r-- root/root 526612 2019-01-31 13:20 ./usr/lib/libRDKitSmilesParse.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitStructChecker.so.1 -> libRDKitStructChecker.so.1.2018.09.1 -rw-r--r-- root/root 388376 2019-01-31 13:20 ./usr/lib/libRDKitStructChecker.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSubgraphs.so.1 -> libRDKitSubgraphs.so.1.2018.09.1 -rw-r--r-- root/root 79580 2019-01-31 13:20 ./usr/lib/libRDKitSubgraphs.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSubstructLibrary.so.1 -> libRDKitSubstructLibrary.so.1.2018.09.1 -rw-r--r-- root/root 91800 2019-01-31 13:20 ./usr/lib/libRDKitSubstructLibrary.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitSubstructMatch.so.1 -> libRDKitSubstructMatch.so.1.2018.09.1 -rw-r--r-- root/root 153436 2019-01-31 13:20 ./usr/lib/libRDKitSubstructMatch.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKitTrajectory.so.1 -> libRDKitTrajectory.so.1.2018.09.1 -rw-r--r-- root/root 79552 2019-01-31 13:20 ./usr/lib/libRDKitTrajectory.so.1.2018.09.1 lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/lib/libRDKithc.so.1 -> libRDKithc.so.1.2018.09.1 -rw-r--r-- root/root 13636 2019-01-31 13:20 ./usr/lib/libRDKithc.so.1.2018.09.1 drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/doc/librdkit1/ -rw-r--r-- root/root 1622 2019-01-31 13:20 ./usr/share/doc/librdkit1/changelog.Debian.gz -rw-r--r-- root/root 6729 2019-01-08 20:22 ./usr/share/doc/librdkit1/copyright drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/lintian/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 107 2019-01-08 20:22 ./usr/share/lintian/overrides/librdkit1 postgresql-11-rdkit_201809.1+dfsg-6_i386.deb -------------------------------------------- new debian package, version 2.0. size 352292 bytes: control archive=1684 bytes. 1645 bytes, 38 lines control 1498 bytes, 18 lines md5sums Package: postgresql-11-rdkit Source: rdkit Version: 201809.1+dfsg-6 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 978 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), librdkit1, libstdc++6 (>= 5.2), postgresql-11 Section: database Priority: optional Homepage: http://www.rdkit.org Description: Cheminformatics and machine-learning software (PostgreSQL Cartridge) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan algorithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. . This package contains the PostgreSQL extension. drwxr-xr-x root/root 0 2019-01-31 13:20 ./ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/postgresql/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/postgresql/11/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/ -rw-r--r-- root/root 35552 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit.index.bc drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/ -rw-r--r-- root/root 376716 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/adapter.bc -rw-r--r-- root/root 6412 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/bfp_gin.bc -rw-r--r-- root/root 14920 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/bfp_gist.bc -rw-r--r-- root/root 16324 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/bfp_op.bc -rw-r--r-- root/root 7432 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/bitstring.bc -rw-r--r-- root/root 14332 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/cache.bc -rw-r--r-- root/root 14168 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/guc.bc -rw-r--r-- root/root 12300 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/low_gist.bc -rw-r--r-- root/root 34896 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/mol_op.bc -rw-r--r-- root/root 17144 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/rdkit_gist.bc -rw-r--r-- root/root 19840 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/rdkit_io.bc -rw-r--r-- root/root 9432 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/rxn_op.bc -rw-r--r-- root/root 14224 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/bitcode/rdkit/sfp_op.bc -rw-r--r-- root/root 271840 2019-01-31 13:20 ./usr/lib/postgresql/11/lib/rdkit.so drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/doc/postgresql-11-rdkit/ lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/share/doc/postgresql-11-rdkit/changelog.Debian.gz -> ../librdkit1/changelog.Debian.gz -rw-r--r-- root/root 6729 2019-01-08 20:22 ./usr/share/doc/postgresql-11-rdkit/copyright drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/postgresql/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/postgresql/11/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/postgresql/11/extension/ -rw-r--r-- root/root 42614 2019-01-31 13:20 ./usr/share/postgresql/11/extension/rdkit--3.7.sql -rw-r--r-- root/root 135 2019-01-31 13:20 ./usr/share/postgresql/11/extension/rdkit.control python-rdkit_201809.1+dfsg-6_i386.deb ------------------------------------- new debian package, version 2.0. size 2938040 bytes: control archive=12420 bytes. 1861 bytes, 39 lines control 44766 bytes, 450 lines md5sums 162 bytes, 9 lines * postinst #!/bin/sh 263 bytes, 14 lines * prerm #!/bin/sh Package: python-rdkit Source: rdkit Version: 201809.1+dfsg-6 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 16440 Depends: fonts-freefont-ttf, rdkit-data, python (<< 2.8), python (>= 2.7~), python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9, python:any (<< 2.8), python:any (>= 2.7~), libboost-python1.67.0, libc6 (>= 2.4), libgcc1 (>= 1:4.2), libpython2.7 (>= 2.7), librdkit1, libschroedinger-maeparser1, libstdc++6 (>= 6) Suggests: rdkit-doc Provides: python2.7-rdkit Section: python Priority: optional Homepage: http://www.rdkit.org Description: Collection of cheminformatics and machine-learning software RDKit is a Python/C++ based cheminformatics and machine-learning software environment. Features Include: . * Chemical reaction handling and transforms * Substructure searching with SMARTS * Canonical SMILES * Molecule-molecule alignment * Large number of molecular descriptors, including topological, compositional, EState, SlogP/SMR, VSA and Feature-map vectors * Fragmentation using RECAP rules * 2D coordinate generation and depiction, including constrained depiction * 3D coordinate generation using geometry embedding * UFF and MMFF94 forcefields * Chirality support, including calculation of (R/S) stereochemistry codes * 2D pharmacophore searching * Fingerprinting, including Daylight-like, atom pairs, topological torsions, Morgan algorithm and MACCS keys * Calculation of shape similarity * Multi-molecule maximum common substructure * Machine-learning via clustering and information theory algorithms * Gasteiger-Marsili partial charge calculation . File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit binary format. Python-Version: 2.7 drwxr-xr-x root/root 0 2019-01-31 13:20 ./ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/python2.7/dist-packages/rdkit/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/python2.7/dist-packages/rdkit/Avalon/ -rw-r--r-- root/root 0 2018-10-22 02:29 ./usr/lib/python2.7/dist-packages/rdkit/Avalon/__init__.py drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/python2.7/dist-packages/rdkit/Chem/ -rw-r--r-- root/root 15537 2018-10-22 02:29 ./usr/lib/python2.7/dist-packages/rdkit/Chem/AllChem.py drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/ -rw-r--r-- root/root 5642 2018-10-22 02:29 ./usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Pairs.py -rw-r--r-- root/root 3280 2018-10-22 02:29 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13:20 ./usr/share/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/doc/python-rdkit/ -rw-r--r-- root/root 225 2019-01-08 20:22 ./usr/share/doc/python-rdkit/TODO.Debian lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/share/doc/python-rdkit/changelog.Debian.gz -> ../librdkit1/changelog.Debian.gz -rw-r--r-- root/root 6729 2019-01-08 20:22 ./usr/share/doc/python-rdkit/copyright drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/pyshared/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/pyshared/rdkit/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/pyshared/rdkit/Chem/ drwxr-xr-x root/root 0 2019-01-31 13:20 ./usr/share/pyshared/rdkit/Chem/Draw/ lrwxrwxrwx root/root 0 2019-01-31 13:20 ./usr/share/pyshared/rdkit/Chem/Draw/FreeSans.ttf -> ../../../../fonts/truetype/freefont/FreeSans.ttf +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 2843772 Build-Time: 2603 Distribution: disco-proposed Host Architecture: i386 Install-Time: 165 Job: rdkit_201809.1+dfsg-6.dsc Machine Architecture: amd64 Package: rdkit Package-Time: 2775 Source-Version: 201809.1+dfsg-6 Space: 2843772 Status: successful Version: 201809.1+dfsg-6 -------------------------------------------------------------------------------- Finished at 20190201-2152 Build needed 00:46:15, 2843772k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-16338414 Scanning for processes to kill in build PACKAGEBUILD-16338414