reapr 1.0.18+dfsg-3 source package in Ubuntu


reapr (1.0.18+dfsg-3) unstable; urgency=medium

  * Rearrange linking order to fix FTBFS with ld --as-needed
    (Thanks to Logan Rosen for the patch from Ubuntu)
  * Update maintainer email address.
  * Bump Standards-Version.

 -- Sascha Steinbiss <email address hidden>  Tue, 12 Jul 2016 08:47:26 +0000

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Uploaded by:
Debian Med on 2016-07-12
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release on 2017-10-24 universe misc
Artful release on 2017-04-20 universe misc


File Size SHA-256 Checksum
reapr_1.0.18+dfsg-3.dsc 2.1 KiB ea71c47cd3b5661c4be23a50e4ef428434bf1e9ccdab8dba4e684aa293b74f39
reapr_1.0.18+dfsg.orig.tar.gz 72.9 KiB 70a9c252474fbbd36360c49589af18ca1599289eff2e98fb8cb7614583cb28a6
reapr_1.0.18+dfsg-3.debian.tar.xz 312.1 KiB 57a822e9fc669aa07964e6836429f61e3a030f66d0470ed6b2c7e83bec00348b

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Binary packages built by this source

reapr: universal tool for genome assembly evaluation

 REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
 paired end reads, without the use of a reference genome for comparison. It can
 be used in any stage of an assembly pipeline to automatically break incorrect
 scaffolds and flag other errors in an assembly for manual inspection. It
 reports mis-assemblies and other warnings, and produces a new broken assembly
 based on the error calls.
 The software requires as input an assembly in FASTA format and paired reads
 mapped to the assembly in a BAM file. Mapping information such as the fragment
 coverage and insert size distribution is analysed to locate mis-assemblies.
 REAPR works best using mapped read pairs from a large insert library (at least
 1000bp). Additionally, if a short insert Illumina library is also available,
 REAPR can combine this with the large insert library in order to score each
 base of the assembly.

reapr-dbgsym: Debug symbols for reapr