RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux z13-005 4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:23:20 UTC 2017 s390x Buildd toolchain package versions: launchpad-buildd_156 python-lpbuildd_156 sbuild_0.67.0-2ubuntu7.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 27 Nov 23:06:19 ntpdate[20225]: adjust time server 10.211.37.1 offset -0.000675 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13783978 /home/buildd/filecache-default/c63540de4962374dad549ddd7685c5c502845718 Creating target for build PACKAGEBUILD-13783978 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13783978 Starting target for build PACKAGEBUILD-13783978 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13783978 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13783978 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13783978 Updating target for build PACKAGEBUILD-13783978 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x Packages [990 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [536 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe s390x Packages [7939 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4870 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x Packages [62.6 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [30.2 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x Packages [168 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [94.0 kB] Fetched 15.1 MB in 2s (5063 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libidn2-0 libip4tc0 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmount1 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libudev1 libuuid1 linux-libc-dev mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 94 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 51.3 MB of archives. After this operation, 620 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main s390x base-files s390x 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x bsdutils s390x 1:2.30.2-0.1ubuntu1 [57.9 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x coreutils s390x 8.26-3ubuntu4 [1197 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x debianutils s390x 4.8.3 [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x dpkg s390x 1.19.0.4ubuntu1 [1122 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main s390x libc6-dev s390x 2.26-0ubuntu2 [2022 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x libc-dev-bin s390x 2.26-0ubuntu2 [62.8 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x linux-libc-dev s390x 4.13.0-17.20 [957 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x libgomp1 s390x 7.2.0-16ubuntu1 [70.0 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x libitm1 s390x 7.2.0-16ubuntu1 [27.0 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-7-base s390x 7.2.0-16ubuntu1 [18.5 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main s390x libgcc1 s390x 1:7.2.0-16ubuntu1 [25.2 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x libatomic1 s390x 7.2.0-16ubuntu1 [8236 B] Get:14 http://ftpmaster.internal/ubuntu bionic/main s390x cpp-7 s390x 7.2.0-16ubuntu1 [5172 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x libcc1-0 s390x 7.2.0-16ubuntu1 [37.7 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x g++-7 s390x 7.2.0-16ubuntu1 [5969 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-7 s390x 7.2.0-16ubuntu1 [5839 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x libgcc-7-dev s390x 7.2.0-16ubuntu1 [279 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x libstdc++-7-dev s390x 7.2.0-16ubuntu1 [1446 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x libstdc++6 s390x 7.2.0-16ubuntu1 [400 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libgmp10 s390x 2:6.1.2+dfsg-1.1 [225 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x libbinutils s390x 2.29.1-8ubuntu1 [305 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x binutils s390x 2.29.1-8ubuntu1 [3352 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x binutils-common s390x 2.29.1-8ubuntu1 [190 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x binutils-s390x-linux-gnu s390x 2.29.1-8ubuntu1 [1696 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x libc6 s390x 2.26-0ubuntu2 [2342 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x e2fslibs s390x 1.43.7-1 [153 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x e2fsprogs s390x 1.43.7-1 [477 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main s390x findutils s390x 4.6.0+git+20170828-2 [287 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x perl-modules-5.26 all 5.26.1-2ubuntu1 [2760 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main s390x libperl5.26 s390x 5.26.1-2ubuntu1 [3364 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main s390x perl s390x 5.26.1-2ubuntu1 [201 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main s390x perl-base s390x 5.26.1-2ubuntu1 [1309 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libuuid1 s390x 2.30.2-0.1ubuntu1 [14.9 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libblkid1 s390x 2.30.2-0.1ubuntu1 [112 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libsmartcols1 s390x 2.30.2-0.1ubuntu1 [74.9 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libfdisk1 s390x 2.30.2-0.1ubuntu1 [145 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main s390x libpcre3 s390x 2:8.39-5ubuntu3 [154 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main s390x libselinux1 s390x 2.7-2 [64.0 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libmount1 s390x 2.30.2-0.1ubuntu1 [122 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x fdisk s390x 2.30.2-0.1ubuntu1 [100 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x util-linux s390x 2.30.2-0.1ubuntu1 [845 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main s390x base-passwd s390x 3.5.44 [46.2 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main s390x libc-bin s390x 2.26-0ubuntu2 [540 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main s390x sysvinit-utils s390x 2.88dsf-59.10ubuntu1 [18.2 kB] Get:46 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libudev1 s390x 235-3ubuntu2 [51.4 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main s390x libapt-pkg5.0 s390x 1.6~alpha5 [724 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main s390x libgpg-error0 s390x 1.27-5 [35.4 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main s390x libgcrypt20 s390x 1.8.1-4 [350 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main s390x gpgv s390x 2.1.15-1ubuntu8 [171 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main s390x libseccomp2 s390x 2.3.1-2.1ubuntu3 [40.8 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main s390x apt s390x 1.6~alpha5 [1111 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x debconf all 1.5.65 [124 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main s390x libapparmor1 s390x 2.11.0-2ubuntu18 [27.8 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libcap2 s390x 1:2.25-1.2 [13.2 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main s390x libip4tc0 s390x 1.6.1-2ubuntu2 [19.3 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x mount s390x 2.30.2-0.1ubuntu1 [106 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x systemd s390x 235-3ubuntu2 [2569 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libsystemd0 s390x 235-3ubuntu2 [180 kB] Get:60 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x systemd-sysv s390x 235-3ubuntu2 [13.1 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main s390x libcap-ng0 s390x 0.7.7-3.1 [10.7 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main s390x libcomerr2 s390x 1.43.7-1 [11.3 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main s390x libsemanage-common all 2.7-2 [6916 B] Get:64 http://ftpmaster.internal/ubuntu bionic/main s390x libsemanage1 s390x 2.7-2 [78.6 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main s390x libss2 s390x 1.43.7-1 [10.7 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main s390x libnettle6 s390x 3.3-2 [103 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main s390x libhogweed4 s390x 3.3-2 [134 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main s390x libp11-kit0 s390x 0.23.9-2 [188 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main s390x libtasn1-6 s390x 4.12-3 [34.2 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main s390x sensible-utils all 0.0.11 [14.8 kB] Get:71 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libassuan0 s390x 2.4.4-1 [31.9 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main s390x pinentry-curses s390x 1.0.0-3 [33.3 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main s390x libnpth0 s390x 1.5-3 [7512 B] Get:74 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg s390x 2.1.15-1ubuntu8 [733 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg-agent s390x 2.1.15-1ubuntu8 [233 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main s390x libsqlite3-0 s390x 3.21.0-1 [460 kB] Get:77 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libssl1.0.0 s390x 1.0.2g-1ubuntu14 [771 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main s390x multiarch-support s390x 2.26-0ubuntu2 [6832 B] Get:79 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x openssl s390x 1.0.2g-1ubuntu14 [477 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main s390x tzdata all 2017c-1 [188 kB] Get:81 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libgssapi-krb5-2 s390x 1.15.2-2 [109 kB] Get:82 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libkrb5-3 s390x 1.15.2-2 [261 kB] Get:83 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libkrb5support0 s390x 1.15.2-2 [30.7 kB] Get:84 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libk5crypto3 s390x 1.15.2-2 [84.0 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main s390x libkeyutils1 s390x 1.5.9-9.2ubuntu1 [9092 B] Get:86 http://ftpmaster.internal/ubuntu bionic/main s390x libidn2-0 s390x 2.0.4-1 [91.2 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main s390x libpng16-16 s390x 1.6.34-1 [171 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main s390x apt-transport-https all 1.6~alpha5 [1692 B] Get:89 http://ftpmaster.internal/ubuntu bionic/main s390x dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main s390x libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main s390x build-essential s390x 12.4ubuntu1 [4754 B] Get:92 http://ftpmaster.internal/ubuntu bionic/main s390x libpsl5 s390x 0.19.1-3 [40.9 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main s390x libcurl3-gnutls s390x 7.55.1-1ubuntu2.1 [177 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main s390x optipng s390x 0.7.6-1ubuntu1 [81.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 51.3 MB in 3s (15.5 MB/s) (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_s390x.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.30.2-0.1ubuntu1_s390x.deb ... Unpacking bsdutils (1:2.30.2-0.1ubuntu1) over (1:2.30.1-0ubuntu4) ... Setting up bsdutils (1:2.30.2-0.1ubuntu1) ... (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_s390x.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12436 files and directories currently installed.) 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Setting up libpng16-16:s390x (1.6.34-1) ... Setting up libpsl5:s390x (0.19.1-3) ... Setting up multiarch-support (2.26-0ubuntu2) ... Setting up tzdata (2017c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 27 23:07:03 UTC 2017. Universal Time is now: Mon Nov 27 23:07:03 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (235-3ubuntu2) ... Setting up linux-libc-dev:s390x (4.13.0-17.20) ... Setting up perl-modules-5.26 (5.26.1-2ubuntu1) ... Setting up libkrb5support0:s390x (1.15.2-2) ... Setting up optipng (0.7.6-1ubuntu1) ... Setting up cpp-7 (7.2.0-16ubuntu1) ... Setting up binutils-common:s390x (2.29.1-8ubuntu1) ... Setting up sensible-utils (0.0.11) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:s390x (5.26.1-2ubuntu1) ... Setting up openssl (1.0.2g-1ubuntu14) ... Setting up libsqlite3-0:s390x (3.21.0-1) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libkeyutils1:s390x (1.5.9-9.2ubuntu1) ... Setting up libc6-dev:s390x (2.26-0ubuntu2) ... Setting up libassuan0:s390x (2.4.4-1) ... Setting up libitm1:s390x (7.2.0-16ubuntu1) ... Setting up libk5crypto3:s390x (1.15.2-2) ... Setting up libbinutils:s390x (2.29.1-8ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.29.1-8ubuntu1) ... Setting up libgcc-7-dev:s390x (7.2.0-16ubuntu1) ... Setting up libstdc++-7-dev:s390x (7.2.0-16ubuntu1) ... Setting up perl (5.26.1-2ubuntu1) ... Setting up pinentry-curses (1.0.0-3) ... Setting up libkrb5-3:s390x (1.15.2-2) ... Setting up binutils (2.29.1-8ubuntu1) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up gcc-7 (7.2.0-16ubuntu1) ... Setting up g++-7 (7.2.0-16ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up libgssapi-krb5-2:s390x (1.15.2-2) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Setting up libcurl3-gnutls:s390x (7.55.1-1ubuntu2.1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13783978 s390x bionic-proposed -c chroot:build-PACKAGEBUILD-13783978 --arch=s390x --dist=bionic-proposed --nolog rheolef_6.7-4.dsc Initiating build PACKAGEBUILD-13783978 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:23:20 UTC 2017 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on z13-005.buildd +==============================================================================+ | rheolef 6.7-4 (s390x) 27 Nov 2017 23:07 | +==============================================================================+ Package: rheolef Version: 6.7-4 Source Version: 6.7-4 Distribution: bionic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/rheolef-_ZKPNl/rheolef-6.7' with '<>' I: NOTICE: Log filtering will replace 'build/rheolef-_ZKPNl' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13783978/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- rheolef_6.7-4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-L01zfd/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-L01zfd/apt_archive ./ InRelease Get:2 copy:/<>/resolver-L01zfd/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-L01zfd/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-L01zfd/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-L01zfd/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (242 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-L01zfd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12437 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 7), autoconf, automake, libtool, flex, bison, openssh-client, chrpath, bsdmainutils, libboost-dev, libboost-iostreams-dev, libboost-mpi-dev, libcgal-dev, liblapack-dev, libscotch-dev, libptscotch-dev, libsuitesparse-dev, libmumps-ptscotch-dev, libmumps-scotch-dev, texinfo, texlive-latex-recommended, texlive-latex-extra, texlive-science, texlive-font-utils, texlive-fonts-recommended, cm-super Filtered Build-Depends: debhelper (>= 7), autoconf, automake, libtool, flex, bison, openssh-client, chrpath, bsdmainutils, libboost-dev, libboost-iostreams-dev, libboost-mpi-dev, libcgal-dev, liblapack-dev, libscotch-dev, libptscotch-dev, libsuitesparse-dev, libmumps-ptscotch-dev, libmumps-scotch-dev, texinfo, texlive-latex-recommended, texlive-latex-extra, texlive-science, texlive-font-utils, texlive-fonts-recommended, cm-super dpkg-deb: building package 'sbuild-build-depends-rheolef-dummy' in '/<>/resolver-plYUOh/apt_archive/sbuild-build-depends-rheolef-dummy.deb'. Ign:1 copy:/<>/resolver-plYUOh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-plYUOh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-plYUOh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-plYUOh/apt_archive ./ Sources [365 B] Get:5 copy:/<>/resolver-plYUOh/apt_archive ./ Packages [694 B] Fetched 3178 B in 0s (278 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install rheolef build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libkrb5-26-heimdal libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libwind0-heimdal Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils chrpath cm-super cm-super-minimal debhelper dh-autoreconf dh-strip-nondeterminism file flex fontconfig-config fonts-dejavu-core fonts-gfs-baskerville fonts-gfs-porson fonts-lmodern gettext gettext-base groff-base ibverbs-providers icu-devtools intltool-debian libamd2 libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblacs-mpi-dev libblacs-openmpi1 libblas-dev libblas3 libboost-atomic1.65-dev libboost-atomic1.65.1 libboost-chrono1.65-dev libboost-chrono1.65.1 libboost-date-time1.65-dev libboost-date-time1.65.1 libboost-dev libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-mpi-dev libboost-mpi1.65-dev libboost-mpi1.65.1 libboost-program-options-dev libboost-program-options1.65-dev libboost-program-options1.65.1 libboost-regex1.65-dev libboost-regex1.65.1 libboost-serialization1.65-dev libboost-serialization1.65.1 libboost-system-dev libboost-system1.65-dev libboost-system1.65.1 libboost-thread-dev libboost-thread1.65-dev libboost-thread1.65.1 libboost1.65-dev libbsd0 libbtf1 libcairo2 libcamd2 libccolamd2 libcgal-dev libcgal12 libcholmod3 libcolamd2 libcroco3 libcups2 libcupsimage2 libcxsparse3 libdbus-1-3 libedit2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran4 libglib2.0-0 libgmp-dev libgmpxx4ldbl libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu-dev libicu60 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libklu1 libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libldl2 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmetis5 libmpfr-dev libmumps-5.1.1 libmumps-dev libmumps-ptscotch-5.1.1 libmumps-ptscotch-dev libmumps-scotch-5.1.1 libmumps-scotch-dev libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libopenmpi-dev libopenmpi2 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpoppler68 libpotrace0 libptexenc1 libptscotch-5.1 libptscotch-6.0 libptscotch-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librbio2 libscalapack-mpi-dev libscalapack-openmpi1 libscotch-5.1 libscotch-6.0 libscotch-dev libsigsegv2 libsm6 libspqr2 libsuitesparse-dev libsuitesparseconfig4 libsynctex1 libtexlua52 libtext-unidecode-perl libtiff5 libtimedate-perl libtool libumfpack5 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pfb2t1c2pfb po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal t1utils tex-common texinfo texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended texlive-lang-greek texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-science ucf x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libboost-doc libboost-graph1.65-dev libboost1.65-doc libboost-container1.65-dev libboost-exception1.65-dev libboost-filesystem1.65-dev libboost-graph-parallel1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-test1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev libmpfi-dev libtbb-dev cups-common gmp-doc libgmp10-doc libhwloc-contrib-plugins icu-doc liblcms2-utils libtool-doc libmpfr-doc openmpi-doc pciutils scalapack-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser apparmor opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc binfmt-support texlive-generic-recommended texinfo-doc-nonfree gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer psutils python-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby libglib2.0-bin Recommended packages: libfl-dev curl | wget | lynx-cur libcupsfilters1 dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libxml-sax-expat-perl xauth libmail-sendmail-perl lmodern ruby wish ghostscript ps2eps tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc texlive-plain-generic texlive-latex-recommended-doc ruby | ruby-interpreter texlive-pictures-doc tk texlive-science-doc libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils chrpath cm-super cm-super-minimal debhelper dh-autoreconf dh-strip-nondeterminism file flex fontconfig-config fonts-dejavu-core fonts-gfs-baskerville fonts-gfs-porson fonts-lmodern gettext gettext-base groff-base ibverbs-providers icu-devtools intltool-debian libamd2 libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblacs-mpi-dev libblacs-openmpi1 libblas-dev libblas3 libboost-atomic1.65-dev libboost-atomic1.65.1 libboost-chrono1.65-dev libboost-chrono1.65.1 libboost-date-time1.65-dev libboost-date-time1.65.1 libboost-dev libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-mpi-dev libboost-mpi1.65-dev libboost-mpi1.65.1 libboost-program-options-dev libboost-program-options1.65-dev libboost-program-options1.65.1 libboost-regex1.65-dev libboost-regex1.65.1 libboost-serialization1.65-dev libboost-serialization1.65.1 libboost-system-dev libboost-system1.65-dev libboost-system1.65.1 libboost-thread-dev libboost-thread1.65-dev libboost-thread1.65.1 libboost1.65-dev libbsd0 libbtf1 libcairo2 libcamd2 libccolamd2 libcgal-dev libcgal12 libcholmod3 libcolamd2 libcroco3 libcups2 libcupsimage2 libcxsparse3 libdbus-1-3 libedit2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran4 libglib2.0-0 libgmp-dev libgmpxx4ldbl libgraphite2-3 libgs9 libgs9-common libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu-dev libicu60 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libklu1 libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libldl2 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmetis5 libmpfr-dev libmumps-5.1.1 libmumps-dev libmumps-ptscotch-5.1.1 libmumps-ptscotch-dev libmumps-scotch-5.1.1 libmumps-scotch-dev libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libopenmpi-dev libopenmpi2 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpoppler68 libpotrace0 libptexenc1 libptscotch-5.1 libptscotch-6.0 libptscotch-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librbio2 libscalapack-mpi-dev libscalapack-openmpi1 libscotch-5.1 libscotch-6.0 libscotch-dev libsigsegv2 libsm6 libspqr2 libsuitesparse-dev libsuitesparseconfig4 libsynctex1 libtexlua52 libtext-unidecode-perl libtiff5 libtimedate-perl libtool libumfpack5 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pfb2t1c2pfb po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal sbuild-build-depends-rheolef-dummy t1utils tex-common texinfo texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended texlive-lang-greek texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-science ucf x11-common xdg-utils zlib1g-dev 0 upgraded, 214 newly installed, 1 to remove and 0 not upgraded. Need to get 260 MB of archives. After this operation, 955 MB of additional disk space will be used. Get:1 copy:/<>/resolver-plYUOh/apt_archive ./ sbuild-build-depends-rheolef-dummy 0.invalid.0 [1024 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main s390x groff-base s390x 1.22.3-9 [1174 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x libbsd0 s390x 0.8.6-3 [40.2 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x bsdmainutils s390x 9.0.14ubuntu1 [178 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x man-db s390x 2.7.6.1-4 [886 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x libsigsegv2 s390x 2.11-1 [12.6 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x flex s390x 2.6.1-1.3 [307 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x libjpeg-turbo8 s390x 1.5.2-0ubuntu5 [100 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main s390x poppler-data all 0.4.8-2 [1479 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main s390x libpython2.7-minimal s390x 2.7.14-2ubuntu2 [338 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x python2.7-minimal s390x 2.7.14-2ubuntu2 [1167 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main s390x python-minimal s390x 2.7.14-2ubuntu1 [28.1 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x mime-support all 3.60ubuntu1 [30.1 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x libexpat1 s390x 2.2.3-2 [79.8 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x libpython2.7-stdlib s390x 2.7.14-2ubuntu2 [1849 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x python2.7 s390x 2.7.14-2ubuntu2 [233 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x libpython-stdlib s390x 2.7.14-2ubuntu1 [7576 B] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x python s390x 2.7.14-2ubuntu1 [140 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main s390x ucf all 3.0036 [52.9 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x tex-common all 6.09 [33.0 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic-mgc s390x 1:5.32-1 [185 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic1 s390x 1:5.32-1 [66.9 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x file s390x 1:5.32-1 [21.8 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x libdbus-1-3 s390x 1.12.2-1ubuntu1 [168 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x libglib2.0-0 s390x 2.54.1-1ubuntu1 [1075 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x libicu60 s390x 60.1-1ubuntu2 [7830 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libxml2 s390x 2.9.4+dfsg1-5.1ubuntu1 [593 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x gettext-base s390x 0.19.8.1-4ubuntu1 [47.7 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main s390x libedit2 s390x 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http://ftpmaster.internal/ubuntu bionic/main s390x autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main s390x libbison-dev s390x 2:3.0.4.dfsg-1build1 [339 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main s390x bison s390x 2:3.0.4.dfsg-1build1 [252 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/universe s390x chrpath s390x 0.16-2 [13.2 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main s390x libpaper1 s390x 1.1.24+nmu5ubuntu1 [13.5 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main s390x libpaper-utils s390x 1.1.24+nmu5ubuntu1 [8182 B] Get:48 http://ftpmaster.internal/ubuntu bionic/main s390x libkpathsea6 s390x 2017.20170613.44572-6build1 [53.0 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main s390x libptexenc1 s390x 2017.20170613.44572-6build1 [34.2 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main s390x libsynctex1 s390x 2017.20170613.44572-6build1 [38.7 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main s390x libtexlua52 s390x 2017.20170613.44572-6build1 [86.3 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main s390x t1utils s390x 1.41-2 [54.0 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main s390x libfreetype6 s390x 2.8-0.2ubuntu2 [313 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main s390x fonts-dejavu-core all 2.37-1 [1041 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main s390x fontconfig-config all 2.12.6-0ubuntu1 [55.5 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main s390x libfontconfig1 s390x 2.12.6-0ubuntu1 [132 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main s390x libpixman-1-0 s390x 0.34.0-1 [136 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-render0 s390x 1.12-1ubuntu1 [14.7 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main s390x libxcb-shm0 s390x 1.12-1ubuntu1 [5420 B] Get:60 http://ftpmaster.internal/ubuntu bionic/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main s390x libcairo2 s390x 1.15.8-2 [528 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main s390x libgraphite2-3 s390x 1.3.10-6 [70.0 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main s390x libavahi-common-data s390x 0.6.32-1ubuntu1 [22.0 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main s390x libavahi-common3 s390x 0.6.32-1ubuntu1 [20.3 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main s390x libavahi-client3 s390x 0.6.32-1ubuntu1 [22.7 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main s390x libcups2 s390x 2.2.6-2 [193 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main s390x libcupsimage2 s390x 2.2.6-2 [17.1 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main s390x libijs-0.35 s390x 0.35-12 [15.0 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main s390x libjbig2dec0 s390x 0.13-5 [53.9 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:71 http://ftpmaster.internal/ubuntu bionic/main s390x liblcms2-2 s390x 2.8-4 [129 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main s390x libjbig0 s390x 2.1-3.1 [26.6 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main s390x libtiff5 s390x 4.0.8-6 [141 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main s390x libgs9-common all 9.21~dfsg+1-0ubuntu3 [5121 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main s390x libgs9 s390x 9.21~dfsg+1-0ubuntu3 [2042 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main s390x libharfbuzz0b s390x 1.7.1-1 [216 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main s390x libharfbuzz-icu0 s390x 1.7.1-1 [5600 B] Get:78 http://ftpmaster.internal/ubuntu bionic/main s390x libnspr4 s390x 2:4.16-1ubuntu2 [107 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main s390x libnss3 s390x 2:3.32-1ubuntu3 [1040 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main s390x libpoppler68 s390x 0.57.0-2ubuntu5 [719 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main s390x libpotrace0 s390x 1.14-2 [16.7 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main s390x x11-common all 1:7.7+19ubuntu3 [22.0 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main s390x libice6 s390x 2:1.0.9-2 [36.9 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main s390x libsm6 s390x 2:1.2.2-1 [15.3 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main s390x libxt6 s390x 1:1.1.5-1 [147 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main s390x libxmu6 s390x 2:1.1.2-2 [43.8 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main s390x libxpm4 s390x 1:3.5.12-1 [32.6 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main s390x libxaw7 s390x 2:1.0.13-1 [163 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main s390x libxi6 s390x 2:1.7.9-1 [27.5 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main s390x libzzip-0-13 s390x 0.13.62-3.1 [25.2 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main s390x texlive-binaries s390x 2017.20170613.44572-6build1 [7235 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main s390x xdg-utils all 1.1.1-1ubuntu3 [59.4 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main s390x texlive-base all 2017.20171031-1 [18.6 MB] Get:94 http://ftpmaster.internal/ubuntu bionic/main s390x fonts-lmodern all 2.004.5-3 [4551 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main s390x texlive-latex-base all 2017.20171031-1 [947 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main s390x texlive-latex-recommended all 2017.20171031-1 [14.8 MB] Get:97 http://ftpmaster.internal/ubuntu bionic/universe s390x cm-super-minimal all 0.3.4-11 [5810 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/universe s390x pfb2t1c2pfb s390x 0.3-11 [9314 B] Get:99 http://ftpmaster.internal/ubuntu bionic/universe s390x cm-super all 0.3.4-11 [18.7 MB] Get:100 http://ftpmaster.internal/ubuntu bionic/main s390x libtool all 2.4.6-2 [194 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main s390x dh-autoreconf all 15 [15.8 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main s390x libarchive-zip-perl all 1.59-1 [84.0 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main s390x libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main s390x dh-strip-nondeterminism all 0.040-1 [5196 B] Get:106 http://ftpmaster.internal/ubuntu bionic/main s390x libcroco3 s390x 0.6.12-1 [74.7 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main s390x gettext s390x 0.19.8.1-4ubuntu1 [1048 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main s390x po-debconf all 1.0.20 [232 kB] Get:110 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x debhelper all 10.10.9ubuntu1 [871 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/universe s390x fonts-gfs-baskerville all 1.1-5 [43.4 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/universe s390x fonts-gfs-porson all 1.1-6 [33.7 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/main s390x libnl-3-200 s390x 3.2.29-0ubuntu3 [50.2 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main s390x libnl-route-3-200 s390x 3.2.29-0ubuntu3 [135 kB] Get:115 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libibverbs1 s390x 15-3 [41.0 kB] Get:116 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x ibverbs-providers s390x 15-3 [136 kB] Get:117 http://ftpmaster.internal/ubuntu bionic/main s390x icu-devtools s390x 60.1-1ubuntu2 [173 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/main s390x libsuitesparseconfig4 s390x 1:4.5.6-1 [8744 B] Get:119 http://ftpmaster.internal/ubuntu bionic/main s390x libamd2 s390x 1:4.5.6-1 [25.0 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main s390x libblas3 s390x 3.7.1-3ubuntu2 [119 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main s390x libblas-dev s390x 3.7.1-3ubuntu2 [121 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main s390x libboost1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [7217 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-atomic1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [7332 B] Get:124 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-atomic1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [5296 B] Get:125 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-system1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [10.3 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-chrono1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [10.2 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-chrono1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [10.0 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-date-time1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [19.8 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-serialization1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [92.0 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-serialization1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [129 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-date-time1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [25.8 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-dev s390x 1.65.1.0ubuntu1 [3128 B] Get:133 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-regex1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [230 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main s390x libicu-dev s390x 60.1-1ubuntu2 [8641 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-regex1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [284 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-iostreams1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [28.0 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-iostreams1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [34.0 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-iostreams-dev s390x 1.65.1.0ubuntu1 [2916 B] Get:139 http://ftpmaster.internal/ubuntu bionic/main s390x libltdl7 s390x 2.4.6-2 [37.8 kB] Get:140 http://ftpmaster.internal/ubuntu bionic/universe s390x libhwloc5 s390x 1.11.8-1 [91.1 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main s390x libpciaccess0 s390x 0.13.4-1ubuntu1 [16.7 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main s390x ocl-icd-libopencl1 s390x 2.2.11-1ubuntu1 [31.0 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/universe s390x libhwloc-plugins s390x 1.11.8-1 [11.7 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/universe s390x libopenmpi2 s390x 2.1.1-7 [1832 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-mpi1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [44.7 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/universe s390x openmpi-common all 2.1.1-7 [140 kB] Get:147 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libibverbs-dev s390x 15-3 [96.7 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main s390x libltdl-dev s390x 2.4.6-2 [161 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/universe s390x libhwloc-dev s390x 1.11.8-1 [154 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/universe s390x libopenmpi-dev s390x 2.1.1-7 [918 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/universe s390x mpi-default-dev s390x 1.9 [3796 B] Get:152 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-mpi1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [132 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/universe s390x libboost-mpi-dev s390x 1.65.1.0ubuntu1 [3004 B] Get:154 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-program-options1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [125 kB] Get:155 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-program-options1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [149 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-program-options-dev s390x 1.65.1.0ubuntu1 [2940 B] Get:157 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-system1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [11.2 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-system-dev s390x 1.65.1.0ubuntu1 [3060 B] Get:159 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-thread1.65.1 s390x 1.65.1+dfsg-0ubuntu4 [41.5 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-thread1.65-dev s390x 1.65.1+dfsg-0ubuntu4 [43.0 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main s390x libboost-thread-dev s390x 1.65.1.0ubuntu1 [2948 B] Get:162 http://ftpmaster.internal/ubuntu bionic/main s390x libbtf1 s390x 1:4.5.6-1 [10.6 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main s390x libcamd2 s390x 1:4.5.6-1 [20.9 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main s390x libccolamd2 s390x 1:4.5.6-1 [21.3 kB] Get:165 http://ftpmaster.internal/ubuntu bionic/universe s390x libcgal12 s390x 4.9-1build2 [234 kB] Get:166 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libgmpxx4ldbl s390x 2:6.1.2+dfsg-1.1 [8876 B] Get:167 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libgmp-dev s390x 2:6.1.2+dfsg-1.1 [302 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main s390x libmpfr-dev s390x 3.1.6-1 [205 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-0ubuntu2 [173 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/universe s390x libcgal-dev s390x 4.9-1build2 [4087 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main s390x libcolamd2 s390x 1:4.5.6-1 [16.1 kB] Get:172 http://ftpmaster.internal/ubuntu bionic/main s390x libgfortran4 s390x 7.2.0-16ubuntu1 [275 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/main s390x liblapack3 s390x 3.7.1-3ubuntu2 [1631 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main s390x libmetis5 s390x 5.1.0.dfsg-5 [151 kB] Get:175 http://ftpmaster.internal/ubuntu bionic/main s390x libcholmod3 s390x 1:4.5.6-1 [301 kB] Get:176 http://ftpmaster.internal/ubuntu bionic/main s390x libcxsparse3 s390x 1:4.5.6-1 [63.8 kB] Get:177 http://ftpmaster.internal/ubuntu bionic/main s390x libklu1 s390x 1:4.5.6-1 [62.6 kB] Get:178 http://ftpmaster.internal/ubuntu bionic/main s390x liblapack-dev s390x 3.7.1-3ubuntu2 [1626 kB] Get:179 http://ftpmaster.internal/ubuntu bionic/main s390x libldl2 s390x 1:4.5.6-1 [10.8 kB] Get:180 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x libscotch-6.0 s390x 6.0.4.dfsg1-7 [374 kB] Get:181 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x libptscotch-6.0 s390x 6.0.4.dfsg1-7 [597 kB] Get:182 http://ftpmaster.internal/ubuntu bionic/main s390x librbio2 s390x 1:4.5.6-1 [22.5 kB] Get:183 http://ftpmaster.internal/ubuntu bionic/main s390x libspqr2 s390x 1:4.5.6-1 [58.9 kB] Get:184 http://ftpmaster.internal/ubuntu bionic/main s390x libumfpack5 s390x 1:4.5.6-1 [201 kB] Get:185 http://ftpmaster.internal/ubuntu bionic/main s390x libsuitesparse-dev s390x 1:4.5.6-1 [848 kB] Get:186 http://ftpmaster.internal/ubuntu bionic/universe s390x libtext-unidecode-perl all 1.30-1 [99.0 kB] Get:187 http://ftpmaster.internal/ubuntu bionic/main s390x libxml-namespacesupport-perl all 1.12-1 [13.2 kB] Get:188 http://ftpmaster.internal/ubuntu bionic/main s390x libxml-sax-base-perl all 1.09-1 [18.8 kB] Get:189 http://ftpmaster.internal/ubuntu bionic/main s390x libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB] Get:190 http://ftpmaster.internal/ubuntu bionic/main s390x libxml-libxml-perl s390x 2.0128+dfsg-5 [301 kB] Get:191 http://ftpmaster.internal/ubuntu bionic/universe s390x openmpi-bin s390x 2.1.1-7 [83.8 kB] Get:192 http://ftpmaster.internal/ubuntu bionic/main s390x preview-latex-style all 11.91-1ubuntu1 [185 kB] Get:193 http://ftpmaster.internal/ubuntu bionic/universe s390x texinfo s390x 6.5.0.dfsg.1-1 [752 kB] Get:194 http://ftpmaster.internal/ubuntu bionic/universe s390x texlive-font-utils all 2017.20171031-1 [1718 kB] Get:195 http://ftpmaster.internal/ubuntu bionic/universe s390x texlive-fonts-recommended all 2017.20171031-1 [5262 kB] Get:196 http://ftpmaster.internal/ubuntu bionic/universe s390x texlive-lang-greek all 2017.20171031-1 [76.3 MB] Get:197 http://ftpmaster.internal/ubuntu bionic/universe s390x texlive-pictures all 2017.20171031-1 [3991 kB] Get:198 http://ftpmaster.internal/ubuntu bionic/universe s390x texlive-latex-extra all 2017.20171031-1 [10.5 MB] Get:199 http://ftpmaster.internal/ubuntu bionic/universe s390x texlive-science all 2017.20171031-1 [3061 kB] Get:200 http://ftpmaster.internal/ubuntu bionic/universe s390x mpi-default-bin s390x 1.9 [3024 B] Get:201 http://ftpmaster.internal/ubuntu bionic/universe s390x libblacs-openmpi1 s390x 1.1-40build1 [49.4 kB] Get:202 http://ftpmaster.internal/ubuntu bionic/universe s390x libblacs-mpi-dev s390x 1.1-40build1 [42.7 kB] Get:203 http://ftpmaster.internal/ubuntu bionic/universe s390x libscalapack-openmpi1 s390x 1.8.0-14build1 [1436 kB] Get:204 http://ftpmaster.internal/ubuntu bionic/universe s390x libmumps-5.1.1 s390x 5.1.1-2build1 [997 kB] Get:205 http://ftpmaster.internal/ubuntu bionic/universe s390x libscalapack-mpi-dev s390x 1.8.0-14build1 [1403 kB] Get:206 http://ftpmaster.internal/ubuntu bionic/universe s390x libmumps-dev s390x 5.1.1-2build1 [890 kB] Get:207 http://ftpmaster.internal/ubuntu bionic/universe s390x libscotch-5.1 s390x 5.1.12b.dfsg-2.1 [287 kB] Get:208 http://ftpmaster.internal/ubuntu bionic/universe s390x libptscotch-5.1 s390x 5.1.12b.dfsg-2.1 [495 kB] Get:209 http://ftpmaster.internal/ubuntu bionic/universe s390x libmumps-ptscotch-5.1.1 s390x 5.1.1-2build1 [1003 kB] Get:210 http://ftpmaster.internal/ubuntu bionic/universe s390x libmumps-ptscotch-dev s390x 5.1.1-2build1 [893 kB] Get:211 http://ftpmaster.internal/ubuntu bionic/universe s390x libmumps-scotch-5.1.1 s390x 5.1.1-2build1 [1004 kB] Get:212 http://ftpmaster.internal/ubuntu bionic/universe s390x libmumps-scotch-dev s390x 5.1.1-2build1 [890 kB] Get:213 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x libscotch-dev s390x 6.0.4.dfsg1-7 [1726 kB] Get:214 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x libptscotch-dev s390x 6.0.4.dfsg1-7 [5148 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 260 MB in 7min 23s (586 kB/s) (Reading database ... 12437 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_s390x.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../01-libbsd0_0.8.6-3_s390x.deb ... Unpacking libbsd0:s390x (0.8.6-3) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.14ubuntu1_s390x.deb ... Unpacking bsdmainutils (9.0.14ubuntu1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.0-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-4_s390x.deb ... Unpacking man-db (2.7.6.1-4) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../05-libsigsegv2_2.11-1_s390x.deb ... Unpacking libsigsegv2:s390x (2.11-1) ... Selecting previously unselected package m4. Preparing to unpack .../06-m4_1.4.18-1_s390x.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package flex. Preparing to unpack .../07-flex_2.6.1-1.3_s390x.deb ... Unpacking flex (2.6.1-1.3) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../08-libjpeg-turbo8_1.5.2-0ubuntu5_s390x.deb ... Unpacking libjpeg-turbo8:s390x (1.5.2-0ubuntu5) ... Selecting previously unselected package poppler-data. Preparing to unpack .../09-poppler-data_0.4.8-2_all.deb ... Unpacking poppler-data (0.4.8-2) ... Selecting previously unselected package libpython2.7-minimal:s390x. Preparing to unpack .../10-libpython2.7-minimal_2.7.14-2ubuntu2_s390x.deb ... Unpacking libpython2.7-minimal:s390x (2.7.14-2ubuntu2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../11-python2.7-minimal_2.7.14-2ubuntu2_s390x.deb ... Unpacking python2.7-minimal (2.7.14-2ubuntu2) ... Selecting previously unselected package python-minimal. Preparing to unpack .../12-python-minimal_2.7.14-2ubuntu1_s390x.deb ... Unpacking python-minimal (2.7.14-2ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../13-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../14-libexpat1_2.2.3-2_s390x.deb ... Unpacking libexpat1:s390x (2.2.3-2) ... Selecting previously unselected package libpython2.7-stdlib:s390x. Preparing to unpack .../15-libpython2.7-stdlib_2.7.14-2ubuntu2_s390x.deb ... Unpacking libpython2.7-stdlib:s390x (2.7.14-2ubuntu2) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.14-2ubuntu2_s390x.deb ... Unpacking python2.7 (2.7.14-2ubuntu2) ... Selecting previously unselected package libpython-stdlib:s390x. Preparing to unpack .../17-libpython-stdlib_2.7.14-2ubuntu1_s390x.deb ... Unpacking libpython-stdlib:s390x (2.7.14-2ubuntu1) ... Setting up libpython2.7-minimal:s390x (2.7.14-2ubuntu2) ... Setting up python2.7-minimal (2.7.14-2ubuntu2) ... Setting up python-minimal (2.7.14-2ubuntu1) ... Selecting previously unselected package python. (Reading database ... 14381 files and directories currently installed.) Preparing to unpack .../000-python_2.7.14-2ubuntu1_s390x.deb ... Unpacking python (2.7.14-2ubuntu1) ... Selecting previously unselected package ucf. Preparing to unpack .../001-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package tex-common. Preparing to unpack .../002-tex-common_6.09_all.deb ... Unpacking tex-common (6.09) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.32-1_s390x.deb ... Unpacking libmagic-mgc (1:5.32-1) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../004-libmagic1_1%3a5.32-1_s390x.deb ... Unpacking libmagic1:s390x (1:5.32-1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.32-1_s390x.deb ... Unpacking file (1:5.32-1) ... Selecting previously unselected package libdbus-1-3:s390x. Preparing to unpack .../006-libdbus-1-3_1.12.2-1ubuntu1_s390x.deb ... Unpacking libdbus-1-3:s390x (1.12.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../007-libglib2.0-0_2.54.1-1ubuntu1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.54.1-1ubuntu1) ... Selecting previously unselected package libicu60:s390x. Preparing to unpack .../008-libicu60_60.1-1ubuntu2_s390x.deb ... Unpacking libicu60:s390x (60.1-1ubuntu2) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../009-libxml2_2.9.4+dfsg1-5.1ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.4+dfsg1-5.1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.19.8.1-4ubuntu1_s390x.deb ... Unpacking gettext-base (0.19.8.1-4ubuntu1) ... Selecting previously unselected package libedit2:s390x. Preparing to unpack .../011-libedit2_3.1-20170329-1_s390x.deb ... Unpacking libedit2:s390x (3.1-20170329-1) ... Selecting previously unselected package libxau6:s390x. Preparing to unpack .../012-libxau6_1%3a1.0.8-1_s390x.deb ... Unpacking libxau6:s390x (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:s390x. Preparing to unpack .../013-libxdmcp6_1%3a1.1.2-3_s390x.deb ... Unpacking libxdmcp6:s390x (1:1.1.2-3) ... Selecting previously unselected package libxcb1:s390x. Preparing to unpack .../014-libxcb1_1.12-1ubuntu1_s390x.deb ... Unpacking libxcb1:s390x (1.12-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../015-libx11-data_2%3a1.6.4-3_all.deb ... 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Setting up libicu60:s390x (60.1-1ubuntu2) ... Setting up libboost-iostreams1.65.1:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libsynctex1:s390x (2017.20170613.44572-6build1) ... Setting up libptexenc1:s390x (2017.20170613.44572-6build1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libscotch-5.1 (5.1.12b.dfsg-2.1) ... Setting up libgfortran4:s390x (7.2.0-16ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:s390x (2.8-4) ... Setting up libjbig0:s390x (2.1-3.1) ... Setting up libsigsegv2:s390x (2.11-1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.8-2) ... Setting up fonts-gfs-porson (1.1-6) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:s390x (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up libboost-atomic1.65.1:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libsuitesparseconfig4:s390x (1:4.5.6-1) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libjpeg-turbo8:s390x (1.5.2-0ubuntu5) ... Setting up libpipeline1:s390x (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up pfb2t1c2pfb (0.3-11) ... Setting up libbsd0:s390x (0.8.6-3) ... Setting up libnspr4:s390x (2:4.16-1ubuntu2) ... Setting up ucf (3.0036) ... Setting up libboost-serialization1.65.1:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libxml2:s390x (2.9.4+dfsg1-5.1ubuntu1) ... Setting up libcgal12:s390x (4.9-1build2) ... Setting up libfreetype6:s390x (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:s390x (1:5.32-1) ... Setting up libgraphite2-3:s390x (1.3.10-6) ... Setting up libcroco3:s390x (0.6.12-1) ... Setting up libboost-system1.65.1:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libamd2:s390x (1:4.5.6-1) ... Setting up libjbig2dec0:s390x (0.13-5) ... Setting up libpixman-1-0:s390x (0.34.0-1) ... Setting up libblas3:s390x (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up openmpi-common (2.1.1-7) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up fonts-gfs-baskerville (1.1-5) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up t1utils (1.41-2) ... Setting up libboost-thread1.65.1:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libmetis5:s390x (5.1.0.dfsg-5) ... Processing triggers for systemd (235-3ubuntu2) ... Setting up libltdl7:s390x (2.4.6-2) ... Setting up libijs-0.35:s390x (0.35-12) ... Setting up libbison-dev:s390x (2:3.0.4.dfsg-1build1) ... Setting up libcolamd2:s390x (1:4.5.6-1) ... Setting up libpciaccess0:s390x (0.13.4-1ubuntu1) ... Setting up libccolamd2:s390x (1:4.5.6-1) ... Setting up libpotrace0 (1.14-2) ... Setting up libboost-chrono1.65.1:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up icu-devtools (60.1-1ubuntu2) ... Setting up bison (2:3.0.4.dfsg-1build1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxdmcp6:s390x (1:1.1.2-3) ... Setting up ocl-icd-libopencl1:s390x (2.2.11-1ubuntu1) ... Setting up libboost-program-options1.65.1:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up bsdmainutils (9.0.14ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:s390x (2:6.1.2+dfsg-1.1) ... Setting up libnl-3-200:s390x (3.2.29-0ubuntu3) ... Setting up libzzip-0-13:s390x (0.13.62-3.1) ... Setting up x11-common (1:7.7+19ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1ubuntu3) ... Setting up openssh-client (1:7.6p1-2) ... Setting up libboost1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:s390x (2.7.14-2ubuntu2) ... Setting up libxau6:s390x (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libdbus-1-3:s390x (1.12.2-1ubuntu1) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libavahi-common-data:s390x (0.6.32-1ubuntu1) ... Setting up libboost-regex1.65.1:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libgmp-dev:s390x (2:6.1.2+dfsg-1.1) ... Setting up libpaper1:s390x (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up libboost-program-options1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libboost-atomic1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up fontconfig-config (2.12.6-0ubuntu1) ... Setting up tex-common (6.09) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libltdl-dev:s390x (2.4.6-2) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up flex (2.6.1-1.3) ... Setting up libblas-dev:s390x (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up liblapack3:s390x (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up librbio2:s390x (1:4.5.6-1) ... Setting up libcamd2:s390x (1:4.5.6-1) ... Setting up libklu1:s390x (1:4.5.6-1) ... Setting up python2.7 (2.7.14-2ubuntu2) ... Setting up libnss3:s390x (2:3.32-1ubuntu3) ... Setting up libharfbuzz0b:s390x (1.7.1-1) ... Setting up libtiff5:s390x (4.0.8-6) ... Setting up libnl-route-3-200:s390x (3.2.29-0ubuntu3) ... Setting up libboost-serialization1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up preview-latex-style (11.91-1ubuntu1) ... Setting up autoconf (2.69-11) ... Setting up libboost-chrono1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libicu-dev (60.1-1ubuntu2) ... Setting up file (1:5.32-1) ... Setting up libhwloc5:s390x (1.11.8-1) ... Setting up libcholmod3:s390x (1:4.5.6-1) ... Setting up libpython-stdlib:s390x (2.7.14-2ubuntu1) ... Setting up libhwloc-plugins (1.11.8-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:s390x (2:1.0.9-2) ... Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-system1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libavahi-common3:s390x (0.6.32-1ubuntu1) ... Setting up libxml-libxml-perl (2.0128+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libboost-regex1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libboost-dev:s390x (1.65.1.0ubuntu1) ... Setting up libmumps-scotch-5.1.1:s390x (5.1.1-2build1) ... Setting up libxcb1:s390x (1.12-1ubuntu1) ... Setting up python (2.7.14-2ubuntu1) ... Setting up libspqr2:s390x (1:4.5.6-1) ... Setting up libboost-program-options-dev:s390x (1.65.1.0ubuntu1) ... Setting up libmpfr-dev:s390x (3.1.6-1) ... Setting up liblapack-dev:s390x (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up libtool (2.4.6-2) ... Setting up libibverbs1:s390x (15-3) ... Setting up libfontconfig1:s390x (2.12.6-0ubuntu1) ... Setting up libsm6:s390x (2:1.2.2-1) ... Setting up libxcb-render0:s390x (1.12-1ubuntu1) ... Setting up libharfbuzz-icu0:s390x (1.7.1-1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:s390x (1.11.8-1) ... Setting up libboost-date-time1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libboost-system-dev:s390x (1.65.1.0ubuntu1) ... Setting up libx11-6:s390x (2:1.6.4-3) ... Setting up libumfpack5:s390x (1:4.5.6-1) ... Setting up libboost-iostreams1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libboost-thread1.65-dev:s390x (1.65.1+dfsg-0ubuntu4) ... Setting up libboost-iostreams-dev:s390x (1.65.1.0ubuntu1) ... Setting up ibverbs-providers:s390x (15-3) ... Setting up libxcb-shm0:s390x (1.12-1ubuntu1) ... Setting up libxpm4:s390x (1:3.5.12-1) ... Setting up libxt6:s390x (1:1.1.5-1) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up libsuitesparse-dev:s390x (1:4.5.6-1) ... Setting up libavahi-client3:s390x (0.6.32-1ubuntu1) ... Setting up libopenmpi2:s390x (2.1.1-7) ... Setting up texinfo (6.5.0.dfsg.1-1) ... Running mktexlsr. This may take some time. ... done. Setting up libpoppler68:s390x (0.57.0-2ubuntu5) ... Setting up libibverbs-dev:s390x (15-3) ... Setting up libcups2:s390x (2.2.6-2) ... Setting up libboost-thread-dev:s390x (1.65.1.0ubuntu1) ... Setting up libxext6:s390x (2:1.3.3-1) ... Setting up libboost-mpi1.65.1 (1.65.1+dfsg-0ubuntu4) ... Setting up libopenmpi-dev (2.1.1-7) ... update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up libptscotch-6.0 (6.0.4.dfsg1-7) ... Setting up libcgal-dev:s390x (4.9-1build2) ... Setting up openmpi-bin (2.1.1-7) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-dev (1.9) ... Setting up libptscotch-5.1 (5.1.12b.dfsg-2.1) ... Setting up libxmu6:s390x (2:1.1.2-2) ... Setting up libcupsimage2:s390x (2.2.6-2) ... Setting up libscotch-dev (6.0.4.dfsg1-7) ... Setting up libgs9:s390x (9.21~dfsg+1-0ubuntu3) ... Setting up libboost-mpi1.65-dev (1.65.1+dfsg-0ubuntu4) ... Setting up mpi-default-bin (1.9) ... Setting up libxi6:s390x (2:1.7.9-1) ... Setting up libxaw7:s390x (2:1.0.13-1) ... Setting up libcairo2:s390x (1.15.8-2) ... Setting up libptscotch-dev (6.0.4.dfsg1-7) ... Setting up libblacs-openmpi1 (1.1-40build1) ... Setting up texlive-binaries (2017.20170613.44572-6build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2017.20171031-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Setting up texlive-fonts-recommended (2017.20171031-1) ... Setting up libboost-mpi-dev (1.65.1.0ubuntu1) ... Setting up libblacs-mpi-dev (1.1-40build1) ... Setting up texlive-latex-base (2017.20171031-1) ... Setting up libscalapack-openmpi1 (1.8.0-14build1) ... Setting up texlive-latex-recommended (2017.20171031-1) ... Setting up texlive-lang-greek (2017.20171031-1) ... Setting up texlive-science (2017.20171031-1) ... Setting up libscalapack-mpi-dev (1.8.0-14build1) ... Setting up texlive-pictures (2017.20171031-1) ... Setting up libmumps-5.1.1:s390x (5.1.1-2build1) ... Setting up texlive-font-utils (2017.20171031-1) ... Setting up libmumps-ptscotch-5.1.1:s390x (5.1.1-2build1) ... Setting up cm-super-minimal (0.3.4-11) ... Setting up texlive-latex-extra (2017.20171031-1) ... Setting up libmumps-dev:s390x (5.1.1-2build1) ... Setting up libmumps-scotch-dev:s390x (5.1.1-2build1) ... Setting up libmumps-ptscotch-dev:s390x (5.1.1-2build1) ... Setting up cm-super (0.3.4-11) ... Creating fonts. This may take some time... done. Setting up dh-autoreconf (15) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up debhelper (10.10.9ubuntu1) ... Setting up sbuild-build-depends-rheolef-dummy (0.invalid.0) ... (Reading database ... 57918 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for tex-common (6.09) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for libc-bin (2.26-0ubuntu2) ... Processing triggers for systemd (235-3ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-98-generic s390x (s390x) Toolchain package versions: binutils_2.29.1-8ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-16ubuntu1 gcc-7_7.2.0-16ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 linux-libc-dev_4.13.0-17.20 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-8ubuntu1 binutils-common_2.29.1-8ubuntu1 binutils-s390x-linux-gnu_2.29.1-8ubuntu1 bison_2:3.0.4.dfsg-1build1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 chrpath_0.16-2 cm-super_0.3.4-11 cm-super-minimal_0.3.4-11 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-16ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.65 debhelper_10.10.9ubuntu1 debianutils_4.8.3 dh-autoreconf_15 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.2-0.1ubuntu1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 flex_2.6.1-1.3 fontconfig-config_2.12.6-0ubuntu1 fonts-dejavu-core_2.37-1 fonts-gfs-baskerville_1.1-5 fonts-gfs-porson_1.1-6 fonts-lmodern_2.004.5-3 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-16ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-16ubuntu1 gcc-7-base_7.2.0-16ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 ibverbs-providers_15-3 icu-devtools_60.1-1ubuntu2 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libamd2_1:4.5.6-1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.4-1 libatomic1_7.2.0-16ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libavahi-client3_0.6.32-1ubuntu1 libavahi-common-data_0.6.32-1ubuntu1 libavahi-common3_0.6.32-1ubuntu1 libbinutils_2.29.1-8ubuntu1 libbison-dev_2:3.0.4.dfsg-1build1 libblacs-mpi-dev_1.1-40build1 libblacs-openmpi1_1.1-40build1 libblas-dev_3.7.1-3ubuntu2 libblas3_3.7.1-3ubuntu2 libblkid1_2.30.2-0.1ubuntu1 libboost-atomic1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-atomic1.65.1_1.65.1+dfsg-0ubuntu4 libboost-chrono1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-chrono1.65.1_1.65.1+dfsg-0ubuntu4 libboost-date-time1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-date-time1.65.1_1.65.1+dfsg-0ubuntu4 libboost-dev_1.65.1.0ubuntu1 libboost-iostreams-dev_1.65.1.0ubuntu1 libboost-iostreams1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-iostreams1.65.1_1.65.1+dfsg-0ubuntu4 libboost-mpi-dev_1.65.1.0ubuntu1 libboost-mpi1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-mpi1.65.1_1.65.1+dfsg-0ubuntu4 libboost-program-options-dev_1.65.1.0ubuntu1 libboost-program-options1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-program-options1.65.1_1.65.1+dfsg-0ubuntu4 libboost-regex1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-regex1.65.1_1.65.1+dfsg-0ubuntu4 libboost-serialization1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-serialization1.65.1_1.65.1+dfsg-0ubuntu4 libboost-system-dev_1.65.1.0ubuntu1 libboost-system1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-system1.65.1_1.65.1+dfsg-0ubuntu4 libboost-thread-dev_1.65.1.0ubuntu1 libboost-thread1.65-dev_1.65.1+dfsg-0ubuntu4 libboost-thread1.65.1_1.65.1+dfsg-0ubuntu4 libboost1.65-dev_1.65.1+dfsg-0ubuntu4 libbsd0_0.8.6-3 libbtf1_1:4.5.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcairo2_1.15.8-2 libcamd2_1:4.5.6-1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-16ubuntu1 libccolamd2_1:4.5.6-1 libcgal-dev_4.9-1build2 libcgal12_4.9-1build2 libcholmod3_1:4.5.6-1 libcolamd2_1:4.5.6-1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcups2_2.2.6-2 libcupsimage2_2.2.6-2 libcurl3-gnutls_7.55.1-1ubuntu2.1 libcxsparse3_1:4.5.6-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libedit2_3.1-20170329-1 libexpat1_2.2.3-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.2-0.1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.6-0ubuntu1 libfreetype6_2.8-0.2ubuntu2 libgcc-7-dev_7.2.0-16ubuntu1 libgcc1_1:7.2.0-16ubuntu1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgfortran4_7.2.0-16ubuntu1 libglib2.0-0_2.54.1-1ubuntu1 libgmp-dev_2:6.1.2+dfsg-1.1 libgmp10_2:6.1.2+dfsg-1.1 libgmpxx4ldbl_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-16ubuntu1 libgpg-error0_1.27-5 libgraphite2-3_1.3.10-6 libgs9_9.21~dfsg+1-0ubuntu3 libgs9-common_9.21~dfsg+1-0ubuntu3 libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libharfbuzz-icu0_1.7.1-1 libharfbuzz0b_1.7.1-1 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhwloc-dev_1.11.8-1 libhwloc-plugins_1.11.8-1 libhwloc5_1.11.8-1 libhx509-5-heimdal_7.4.0.dfsg.1-2 libibverbs-dev_15-3 libibverbs1_15-3 libice6_2:1.0.9-2 libicu-dev_60.1-1ubuntu2 libicu60_60.1-1ubuntu2 libidn11_1.33-2 libidn2-0_2.0.4-1 libijs-0.35_0.35-12 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-1 libitm1_7.2.0-16ubuntu1 libjbig0_2.1-3.1 libjbig2dec0_0.13-5 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2ubuntu1 libklu1_1:4.5.6-1 libkmod2_24-1ubuntu2 libkpathsea6_2017.20170613.44572-6build1 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 liblapack-dev_3.7.1-3ubuntu2 liblapack3_3.7.1-3ubuntu2 liblcms2-2_2.8-4 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 libldl2_1:4.5.6-1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmetis5_5.1.0.dfsg-5 libmount1_2.30.2-0.1ubuntu1 libmpc3_1.0.3-2 libmpfr-dev_3.1.6-1 libmpfr4_3.1.6-1 libmumps-5.1.1_5.1.1-2build1 libmumps-dev_5.1.1-2build1 libmumps-ptscotch-5.1.1_5.1.1-2build1 libmumps-ptscotch-dev_5.1.1-2build1 libmumps-scotch-5.1.1_5.1.1-2build1 libmumps-scotch-dev_5.1.1-2build1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libnspr4_2:4.16-1ubuntu2 libnss3_2:3.32-1ubuntu3 libopenmpi-dev_2.1.1-7 libopenmpi2_2.1.1-7 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpaper-utils_1.1.24+nmu5ubuntu1 libpaper1_1.1.24+nmu5ubuntu1 libpciaccess0_0.13.4-1ubuntu1 libpcre3_2:8.39-5ubuntu3 libperl5.26_5.26.1-2ubuntu1 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-1 libpng16-16_1.6.34-1 libpoppler68_0.57.0-2ubuntu5 libpotrace0_1.14-2 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.19.1-3 libptexenc1_2017.20170613.44572-6build1 libptscotch-5.1_5.1.12b.dfsg-2.1 libptscotch-6.0_6.0.4.dfsg1-7 libptscotch-dev_6.0.4.dfsg1-7 libpython-stdlib_2.7.14-2ubuntu1 libpython2.7-minimal_2.7.14-2ubuntu2 libpython2.7-stdlib_2.7.14-2ubuntu2 librbio2_1:4.5.6-1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libscalapack-mpi-dev_1.8.0-14build1 libscalapack-openmpi1_1.8.0-14build1 libscotch-5.1_5.1.12b.dfsg-2.1 libscotch-6.0_6.0.4.dfsg1-7 libscotch-dev_6.0.4.dfsg1-7 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.30.2-0.1ubuntu1 libspqr2_1:4.5.6-1 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu14 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 libsuitesparse-dev_1:4.5.6-1 libsuitesparseconfig4_1:4.5.6-1 libsynctex1_2017.20170613.44572-6build1 libsystemd0_235-3ubuntu2 libtasn1-6_4.12-3 libtexlua52_2017.20170613.44572-6build1 libtext-unidecode-perl_1.30-1 libtiff5_4.0.8-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libudev1_235-3ubuntu2 libumfpack5_1:4.5.6-1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1ubuntu1 libwind0-heimdal_7.4.0.dfsg.1-2 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.12-1ubuntu1 libxcb-shm0_1.12-1ubuntu1 libxcb1_1.12-1ubuntu1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxi6_2:1.7.9-1 libxml-libxml-perl_2.0128+dfsg-5 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_0.99+dfsg-2ubuntu1 libxml2_2.9.4+dfsg1-5.1ubuntu1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzzip-0-13_0.13.62-3.1 linux-libc-dev_4.13.0-17.20 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-4 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.30.2-0.1ubuntu1 mpi-default-bin_1.9 mpi-default-dev_1.9 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_2.1.1-7 openmpi-common_2.1.1-7 openssh-client_1:7.6p1-2 openssl_1.0.2g-1ubuntu14 optipng_0.7.6-1ubuntu1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-2ubuntu1 perl-base_5.26.1-2ubuntu1 perl-modules-5.26_5.26.1-2ubuntu1 pfb2t1c2pfb_0.3-11 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 poppler-data_0.4.8-2 preview-latex-style_11.91-1ubuntu1 procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-minimal_2.7.14-2ubuntu1 python2.7_2.7.14-2ubuntu2 python2.7-minimal_2.7.14-2ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rheolef-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_235-3ubuntu2 systemd-sysv_235-3ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 t1utils_1.41-2 tar_1.29b-2 tex-common_6.09 texinfo_6.5.0.dfsg.1-1 texlive-base_2017.20171031-1 texlive-binaries_2017.20170613.44572-6build1 texlive-font-utils_2017.20171031-1 texlive-fonts-recommended_2017.20171031-1 texlive-lang-greek_2017.20171031-1 texlive-latex-base_2017.20171031-1 texlive-latex-extra_2017.20171031-1 texlive-latex-recommended_2017.20171031-1 texlive-pictures_2017.20171031-1 texlive-science_2017.20171031-1 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ucf_3.0036 util-linux_2.30.2-0.1ubuntu1 x11-common_1:7.7+19ubuntu3 xdg-utils_1.1.1-1ubuntu3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 27 14:02:36 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rheolef_6.7-4.dsc dpkg-source: info: extracting rheolef in rheolef-6.7 dpkg-source: info: unpacking rheolef_6.7.orig.tar.gz dpkg-source: info: unpacking rheolef_6.7-4.debian.tar.xz dpkg-source: info: applying do-not-treat-warnings-as-errors.patch dpkg-source: info: applying cgal-4-11.patch dpkg-source: info: applying mpi-autodetect.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13783978 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13783978 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13783978 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package rheolef dpkg-buildpackage: info: source version 6.7-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build rheolef-6.7 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh_testdir dh_testroot # for double build, cleaning via Makefile if test -f Makefile; then make distclean; fi rm -f build-stamp configure-stamp dh_clean # Removing installation directories rm -Rf debian/tmp-rheolef # Removing and/or reinitialising files generated after templates # rm -f debian/shlibs.local debian/rules build-arch # Prepare the debian control files necessary for the creation of the packages cat debian/shlibs.librheolef1.X | \ sed -e "s/\@LIBRHEOLEF\@/librheolef1/g" \ -e "s/\@MAJOR_VERSION\@/6/g" \ -e "s/\@MINOR_VERSION\@/7/g" \ -e "s/\@VERSION\@/6.7/g" \ -e "s/\@SONAME\@/6/g" > debian/shlibs.librheolef1 echo 'shlibs:Depends=libc6 (>= 2.7-1), libgcc1 (>= 1:4.3.1-9), libstdc++6 (>= 4.3.1-9)' > debian/librheolef1.substvars dh_testdir ./bootstrap automake version: 1.15.1 + rm -rf autom4te.cache config.status config2.status + rm -f config/config.guess config/config.sub + rm -f config/config.h config/acconfig.h config/acconfig.h.in + rm -f aclocal.m4 config/aclocal.m4 + rm -f libtool config/libtool.m4 config/ltmain.sh config/ltversion.m4 config/ltsugar.m4 config/lt~obsolete.m4 config/ltoptions.m4 + rm -f config/texinfo.tex + rm -f config/install-sh config/missing config/mkinstalldirs config/depcomp + rm -f config/am_options.mk + test 15 -lt 13 + echo AUTOMAKE_OPTIONS = serial-tests + test -f INSTALL + export SED=sed + export EGREP=grep -E + libtoolize --force --copy libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' + aclocal -I config + autoheader -B config + autoconf -B config + find . -name Makefile.am + grep -v libltdl + sed -e s%\.am$%% -e s%\./%% + automake --gnu --add-missing --copy --force-missing Makefile skit/Makefile skit/lib/Makefile skit/tst/Makefile skit/plib2/Makefile skit/pbin/Makefile skit/ptst2/Makefile config/Makefile doc/refman/Makefile doc/pusrman/Makefile doc/Makefile doc/usrman/Makefile doc/pexamples/Makefile doc/doxygen/Makefile nfem/quadrature/Makefile nfem/Makefile nfem/lib/Makefile nfem/tst/Makefile nfem/data/Makefile nfem/geo_element/Makefile nfem/pbin/Makefile nfem/form_element/Makefile nfem/basis/Makefile nfem/pbasis/Makefile nfem/plib/Makefile nfem/vtk/Makefile nfem/sbin/Makefile nfem/ptst/Makefile nfem/bin/Makefile util/qd/Makefile util/Makefile util/lib/Makefile util/tst/Makefile util/fdstream/Makefile util/bamg/Makefile util/ublas/Makefile util/doubledouble/Makefile util/bigfloat/Makefile util/dmallocxx/Makefile configure.ac:465: installing 'config/compile' configure.ac:460: installing 'config/config.guess' configure.ac:460: installing 'config/config.sub' configure.ac:423: installing 'config/install-sh' configure.ac:423: installing 'config/missing' skit/lib/Makefile.am: installing 'config/depcomp' doc/refman/Makefile.am:40: installing 'config/texinfo.tex' + exit_status=0 + set +x CXX=g++ CPPFLAGS="`dpkg-buildflags --get CPPFLAGS`" CXXFLAGS="-O3 -g `dpkg-buildflags --get CXXFLAGS | sed -e 's/-O2/-O3/' -e 's/-g//'`" LDFLAGS="`dpkg-buildflags --get LDFLAGS` -O3 -g `dpkg-buildflags --get CXXFLAGS | sed -e 's/-O2/-O3/' -e 's/-g//'`" ./configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --disable-optim --enable-debian-packaging --enable-fast-install --disable-ginac --without-trilinos-libdir configuring rheolef 6.7... checking for aclocal... aclocal checking for autoheader... autoheader checking for autoconf... autoconf checking for automake... automake checking for tar... tar checking for makeinfo... makeinfo checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using INTEL C++ compiler... no checking whether we are using CLANG C++ compiler... no checking for 2011 GNU C++ option -std=c++11... yes checking for c++ ieee flag... checking how to run the C preprocessor... gcc -E checking for make... make checking whether make is GNU make... yes checking for col... col checking for tex... tex checking for latex... latex checking for pdflatex... pdflatex checking for hyperref LaTeX package... yes checking for bibtex... bibtex checking for makeindex... makeindex checking for fig2dev... no checking for gnuplot... no checking for texi2dvi... texi2dvi checking for texi2pdf... texi2pdf checking for dvips... dvips checking for ps2pdf... no checking for doxygen... no checking for dot... no checking for convert... no checking for plotmtv... no checking for gzip... gzip checking for bzip2... bzip2 checking for flex... /usr/bin/flex checking for FlexLexer.h... "no" checking for bison... bison checking for m4... m4 checking for gperf... no checking climits usability... yes checking climits presence... yes checking for climits... yes checking cmath usability... yes checking cmath presence... yes checking for cmath... yes checking cstdio usability... yes checking cstdio presence... yes checking for cstdio... yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking cctype usability... yes checking cctype presence... yes checking for cctype... yes checking cassert usability... yes checking cassert presence... yes checking for cassert... yes checking cfloat usability... yes checking cfloat presence... yes checking for cfloat... yes checking cstring usability... yes checking cstring presence... yes checking for cstring... yes checking cstdarg usability... yes checking cstdarg presence... yes checking for cstdarg... yes checking ctime usability... yes checking ctime presence... yes checking for ctime... yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iomanip usability... yes checking iomanip presence... yes checking for iomanip... yes checking ios usability... yes checking ios presence... yes checking for ios... yes checking string usability... yes checking string presence... yes checking for string... yes checking sstream usability... yes checking sstream presence... yes checking for sstream... yes checking iterator usability... yes checking iterator presence... yes checking for iterator... yes checking functional usability... yes checking functional presence... yes checking for functional... yes checking numeric usability... yes checking numeric presence... yes checking for numeric... yes checking algorithm usability... yes checking algorithm presence... yes checking for algorithm... yes checking memory usability... yes checking memory presence... yes checking for memory... yes checking istream usability... yes checking istream presence... yes checking for istream... yes checking ostream usability... yes checking ostream presence... yes checking for ostream... yes checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking vector usability... yes checking vector presence... yes checking for vector... yes checking list usability... yes checking list presence... yes checking for list... yes checking set usability... yes checking set presence... yes checking for set... yes checking map usability... yes checking map presence... yes checking for map... yes checking utility usability... yes checking utility presence... yes checking for utility... yes checking symlink.h usability... no checking symlink.h presence... no checking for symlink.h... no checking for unistd.h... (cached) yes checking for iostream::rdbuf(void*)... no checking for ios::bp... no checking for ios::setstate(long)... no checking for ios::bitalloc()... no checking for std::initializer_list... yes checking for variadic template... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for gettimeofday... yes checking for clock_gettime useability... yes checking for library containing clock_gettime... none required checking for isinf(double)... yes checking for finite(double)... no checking for abs(double)... yes checking for sqr(double)... no checking for long long int... yes checking for unsigned long long int... yes checking for boost library... checking boost/numeric/ublas/matrix.hpp usability... yes checking boost/numeric/ublas/matrix.hpp presence... yes checking for boost/numeric/ublas/matrix.hpp... yes checking for boost/numeric/ublas/matrix.hpp usability...... yes checking for mpirun... /usr/bin/mpirun checking for mpi style... openmpi checking for mpi includes... -I/usr/include/openmpi checking for libmpi... -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes checking boost/mpi.hpp usability... yes checking boost/mpi.hpp presence... yes checking for boost/mpi.hpp... yes checking for boost::mpi... -lboost_mpi -lboost_serialization checking if programs compile and link with mpi and boost::mpi... yes checking for scotch library... -lptscotchparmetis -lptscotch -lptscotcherrexit -lz checking for blas library... checking for scalapack library... checking dmumps_c.h usability... yes checking dmumps_c.h presence... yes checking for dmumps_c.h... yes checking for libdmumps... -ldmumps_ptscotch checking for mumps compiled with scotch support... yes checking for mumps compiled with ptscotch support... yes checking for mumps compiled with metis support... no checking for mumps compiled with parmetis support... no checking for libumfpack... -lumfpack -lamd checking for umfpack.h... /usr/include/suitesparse/umfpack.h checking for library containing amd_order... -lamd checking suitesparse/amd.h usability... yes checking suitesparse/amd.h presence... yes checking for suitesparse/amd.h... yes checking CGAL/Filtered_kernel.h usability... yes checking CGAL/Filtered_kernel.h presence... yes checking for CGAL/Filtered_kernel.h... yes checking for cgal library... -lCGAL -lgmp checking whether to generate debugging information... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config/Makefile config.status: creating config/config.mk config.status: creating util/Makefile config.status: creating util/dmallocxx/Makefile config.status: creating util/qd/Makefile config.status: creating util/doubledouble/Makefile config.status: creating util/bigfloat/Makefile config.status: creating util/fdstream/Makefile config.status: creating util/ublas/Makefile config.status: creating util/bamg/Makefile config.status: creating util/lib/Makefile config.status: creating util/tst/Makefile config.status: creating skit/Makefile config.status: creating skit/lib/Makefile config.status: creating skit/tst/Makefile config.status: creating skit/plib2/Makefile config.status: creating skit/pbin/Makefile config.status: creating skit/ptst2/Makefile config.status: creating nfem/Makefile config.status: creating nfem/data/Makefile config.status: creating nfem/quadrature/Makefile config.status: creating nfem/geo_element/Makefile config.status: creating nfem/lib/Makefile config.status: creating nfem/plib/Makefile config.status: creating nfem/basis/Makefile config.status: creating nfem/pbasis/Makefile config.status: creating nfem/form_element/Makefile config.status: creating nfem/sbin/Makefile config.status: creating nfem/bin/Makefile config.status: creating nfem/pbin/Makefile config.status: creating nfem/vtk/Makefile config.status: creating nfem/tst/Makefile config.status: creating nfem/ptst/Makefile config.status: creating doc/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/usrman/Makefile config.status: creating doc/pexamples/Makefile config.status: creating doc/pusrman/Makefile config.status: creating doc/doxygen/Makefile config.status: creating config/acconfig.h config.status: creating util/qd/qd_config.h config.status: util/qd/qd_config.h is unchanged config.status: creating util/qd/qd_config_internal.h config.status: util/qd/qd_config_internal.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands checking for shlibpath variable name... LD_LIBRARY_PATH checking for hardcode libdir flag spec... -Wl,-rpath -Wl,${exec_prefix}/lib configure: creating config2.status configure: creating config/config.h configure: creating config/config.mk ------------------------------------------------ summary: prefix : /usr c++ compiler : gnu optimization : machine-independent boost : yes ginac : geometry : cgal direct solver : mumps (distributed) umfpack (sequential) preconditioners : builtin partitioner : scotch mpi : openmpi distributed : yes ------------------------------------------------ touch configure-stamp dh_testdir # Compile the package. make make[1]: Entering directory '/<>' Making all in config make all-am g++ -DHAVE_CONFIG_H -I. -I../util/qd -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT doc2man.o -MD -MP -MF .deps/doc2man.Tpo -c -o doc2man.o doc2man.cc mv -f .deps/doc2man.Tpo .deps/doc2man.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o doc2man doc2man.o libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o doc2man doc2man.o g++ -DHAVE_CONFIG_H -I. -I../util/qd -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT doc2texi.o -MD -MP -MF .deps/doc2texi.Tpo -c -o doc2texi.o doc2texi.cc mv -f .deps/doc2texi.Tpo .deps/doc2texi.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o doc2texi doc2texi.o libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o doc2texi doc2texi.o g++ -DHAVE_CONFIG_H -I. -I../util/qd -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT doc2oxy.o -MD -MP -MF .deps/doc2oxy.Tpo -c -o doc2oxy.o doc2oxy.cc mv -f .deps/doc2oxy.Tpo .deps/doc2oxy.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o doc2oxy doc2oxy.o libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o doc2oxy doc2oxy.o g++ -DHAVE_CONFIG_H -I. -I../util/qd -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT col-col.o -MD -MP -MF .deps/col-col.Tpo -c -o col-col.o `test -f 'col.cc' || echo './'`col.cc mv -f .deps/col-col.Tpo .deps/col-col.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o col col-col.o libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o col col-col.o cd .. \ && CONFIG_FILES=config/rheolef-config CONFIG_HEADERS= CONFIG_COMMANDS= /bin/bash ./config.status config.status: creating config/rheolef-config /bin/sh ./config2-subst.sh ../config2.status rheolef-config grep -e '^#' < rheolef-config | sed -e 's/^#//' | ../config/col -b -x | ../config/doc2man -package rheolef -version 6.7 -name rheolef-config -section 1rheolef > rheolef-config.1rheolef grep '^dnl[ ][ ]*#' acinclude.m4 | \ sed -e 's/^dnl[ ][ ]*//' -e 's/^#//' | \ ../config/col -b -x | ../config/doc2man -package rheolef -version 6.7 -name acinclude -section 9rheolef > acinclude.9rheolef cd .. \ && CONFIG_FILES=config/rheolef.mk CONFIG_HEADERS= CONFIG_COMMANDS= /bin/bash ./config.status config.status: creating config/rheolef.mk /bin/sh ./config2-subst.sh ../config2.status rheolef.mk sed -e 's/^prefix/rheolef_prefix/' \ -e 's/^exec_prefix/rheolef_exec_prefix/' \ -e 's/{prefix}/{rheolef_prefix}/g' \ -e 's/{exec_prefix}/{rheolef_exec_prefix}/g' \ < rheolef.mk > rheolef.mk.new mv rheolef.mk.new rheolef.mk grep '^#' ./rheolef-config.in | sed -e 's/^#//' | \ ../config/col -b -x | ../config/doc2texi -file rheolef-config.in -node 'rheolef-config command,,, Commands' > rheolef-config.1texi grep '^dnl[ ][ ]*#' acinclude.m4 | \ sed -e 's/^dnl[ ][ ]*//' -e 's/^#//' | \ ../config/col -b -x | ../config/doc2texi -file config/acinclude.m4 -node "acinclude internal,,, Internal others" > acinclude.9texi /bin/sh ../config/mk-symlink.sh .. .. . config.h rheolef.mk linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/config.h ln -s /<>/config/config.h config.h /bin/rm -f /<>/include/rheolef/rheolef.mk ln -s /<>/config/rheolef.mk rheolef.mk linking done. /bin/sh ../config/mk-symlink.sh .. .. . compiler.h extended_arithmetic_support.h dmalloc_return.h numeric_limits.h numeric_flags.h linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/compiler.h ln -s /<>/config/compiler.h compiler.h /bin/rm -f /<>/include/rheolef/extended_arithmetic_support.h ln -s /<>/config/extended_arithmetic_support.h extended_arithmetic_support.h /bin/rm -f /<>/include/rheolef/dmalloc_return.h ln -s /<>/config/dmalloc_return.h dmalloc_return.h /bin/rm -f /<>/include/rheolef/numeric_limits.h ln -s /<>/config/numeric_limits.h numeric_limits.h /bin/rm -f /<>/include/rheolef/numeric_flags.h ln -s /<>/config/numeric_flags.h numeric_flags.h linking done. Making all in util Making all in bamg g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT bamg.o -MD -MP -MF .deps/bamg.Tpo -c -o bamg.o bamg.cpp mv -f .deps/bamg.Tpo .deps/bamg.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT bamg-aux.o -MD -MP -MF .deps/bamg-aux.Tpo -c -o bamg-aux.o bamg-aux.cpp mv -f .deps/bamg-aux.Tpo .deps/bamg-aux.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Mesh2.o -MD -MP -MF .deps/Mesh2.Tpo -c -o Mesh2.o Mesh2.cpp mv -f .deps/Mesh2.Tpo .deps/Mesh2.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT MeshRead.o -MD -MP -MF .deps/MeshRead.Tpo -c -o MeshRead.o MeshRead.cpp mv -f .deps/MeshRead.Tpo .deps/MeshRead.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT MeshWrite.o -MD -MP -MF .deps/MeshWrite.Tpo -c -o MeshWrite.o MeshWrite.cpp mv -f .deps/MeshWrite.Tpo .deps/MeshWrite.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT MeshGeom.o -MD -MP -MF .deps/MeshGeom.Tpo -c -o MeshGeom.o MeshGeom.cpp mv -f .deps/MeshGeom.Tpo .deps/MeshGeom.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT MeshQuad.o -MD -MP -MF .deps/MeshQuad.Tpo -c -o MeshQuad.o MeshQuad.cpp mv -f .deps/MeshQuad.Tpo .deps/MeshQuad.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT QuadTree.o -MD -MP -MF .deps/QuadTree.Tpo -c -o QuadTree.o QuadTree.cpp mv -f .deps/QuadTree.Tpo .deps/QuadTree.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Meshio.o -MD -MP -MF .deps/Meshio.Tpo -c -o Meshio.o Meshio.cpp mv -f .deps/Meshio.Tpo .deps/Meshio.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Metric.o -MD -MP -MF .deps/Metric.Tpo -c -o Metric.o Metric.cpp mv -f .deps/Metric.Tpo .deps/Metric.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -DBAMG_LONG_LONG -w -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT SetOfE4.o -MD -MP -MF .deps/SetOfE4.Tpo -c -o SetOfE4.o SetOfE4.cpp mv -f .deps/SetOfE4.Tpo .deps/SetOfE4.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o bamg bamg.o bamg-aux.o Mesh2.o MeshRead.o MeshWrite.o MeshGeom.o MeshQuad.o QuadTree.o Meshio.o Metric.o SetOfE4.o libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o bamg bamg.o bamg-aux.o Mesh2.o MeshRead.o MeshWrite.o MeshGeom.o MeshQuad.o QuadTree.o Meshio.o Metric.o SetOfE4.o grep -e '^#' < ./bamg-man.txt | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name bamg -section 1rheolef > bamg.1rheolef grep -e '^#' < ./bamg-man.txt | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2texi -file util/bamg/bamg-man.txt -node "bamg command,,, Commands" > bamg.1texi Making all in fdstream linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/pstream.h ln -s /<>/util/fdstream/pstream.h pstream.h /bin/rm -f /<>/include/rheolef/fdstream.h ln -s /<>/util/fdstream/fdstream.h fdstream.h linking done. make all-am make[4]: Nothing to be done for 'all-am'. Making all in ublas linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/ublas-io.h ln -s /<>/util/ublas/ublas-io.h ublas-io.h /bin/rm -f /<>/include/rheolef/ublas-invert.h ln -s /<>/util/ublas/ublas-invert.h ublas-invert.h /bin/rm -f /<>/include/rheolef/ublas_invert_3x3.h ln -s /<>/util/ublas/ublas_invert_3x3.h ublas_invert_3x3.h /bin/rm -f /<>/include/rheolef/ublas_matrix_range.h ln -s /<>/util/ublas/ublas_matrix_range.h ublas_matrix_range.h linking done. make all-am make[4]: Nothing to be done for 'all-am'. Making all in lib linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/smart_pointer.h ln -s /<>/util/lib/smart_pointer.h smart_pointer.h /bin/rm -f /<>/include/rheolef/pretty_name.h ln -s /<>/util/lib/pretty_name.h pretty_name.h /bin/rm -f /<>/include/rheolef/promote.h ln -s /<>/util/lib/promote.h promote.h /bin/rm -f /<>/include/rheolef/heap_object.h ln -s /<>/util/lib/heap_object.h heap_object.h /bin/rm -f /<>/include/rheolef/heap_allocator.h ln -s /<>/util/lib/heap_allocator.h heap_allocator.h /bin/rm -f /<>/include/rheolef/stack_allocator.h ln -s /<>/util/lib/stack_allocator.h stack_allocator.h /bin/rm -f /<>/include/rheolef/Vector.h ln -s /<>/util/lib/Vector.h Vector.h /bin/rm -f /<>/include/rheolef/iorheo.h ln -s /<>/util/lib/iorheo.h iorheo.h /bin/rm -f /<>/include/rheolef/iorheo-members.h ln -s /<>/util/lib/iorheo-members.h iorheo-members.h /bin/rm -f /<>/include/rheolef/catchmark.h ln -s /<>/util/lib/catchmark.h catchmark.h /bin/rm -f /<>/include/rheolef/iorheobase.h ln -s /<>/util/lib/iorheobase.h iorheobase.h /bin/rm -f /<>/include/rheolef/rheostream.h ln -s /<>/util/lib/rheostream.h rheostream.h /bin/rm -f /<>/include/rheolef/misc_algo.h ln -s /<>/util/lib/misc_algo.h misc_algo.h /bin/rm -f /<>/include/rheolef/pair_util.h ln -s /<>/util/lib/pair_util.h pair_util.h /bin/rm -f /<>/include/rheolef/the_clock.h ln -s /<>/util/lib/the_clock.h the_clock.h linking done. make all-am /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT iorheo.lo -MD -MP -MF .deps/iorheo.Tpo -c -o iorheo.lo iorheo.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT iorheo.lo -MD -MP -MF .deps/iorheo.Tpo -c iorheo.cc -fPIC -DPIC -o .libs/iorheo.o mv -f .deps/iorheo.Tpo .deps/iorheo.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT rheostream.lo -MD -MP -MF .deps/rheostream.Tpo -c -o rheostream.lo rheostream.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT rheostream.lo -MD -MP -MF .deps/rheostream.Tpo -c rheostream.cc -fPIC -DPIC -o .libs/rheostream.o mv -f .deps/rheostream.Tpo .deps/rheostream.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT the_clock.lo -MD -MP -MF .deps/the_clock.Tpo -c -o the_clock.lo the_clock.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT the_clock.lo -MD -MP -MF .deps/the_clock.Tpo -c the_clock.cc -fPIC -DPIC -o .libs/the_clock.o mv -f .deps/the_clock.Tpo .deps/the_clock.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT pretty_name.lo -MD -MP -MF .deps/pretty_name.Tpo -c -o pretty_name.lo pretty_name.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT pretty_name.lo -MD -MP -MF .deps/pretty_name.Tpo -c pretty_name.cc -fPIC -DPIC -o .libs/pretty_name.o mv -f .deps/pretty_name.Tpo .deps/pretty_name.Plo /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o libutil.la iorheo.lo rheostream.lo the_clock.lo pretty_name.lo -lboost_iostreams libtool: link: ar cru .libs/libutil.a .libs/iorheo.o .libs/rheostream.o .libs/the_clock.o .libs/pretty_name.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libutil.a libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" ) cat rheostream.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name rheostream -section 2rheolef > rheostream.2rheolef cat catchmark.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name catchmark -section 4rheolef > catchmark.4rheolef cat smart_pointer.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name smart_pointer -section 7rheolef > smart_pointer.7rheolef cat heap_allocator.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name heap_allocator -section 7rheolef > heap_allocator.7rheolef cat stack_allocator.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name stack_allocator -section 7rheolef > stack_allocator.7rheolef cat Vector.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name Vector -section 7rheolef > Vector.7rheolef cat iorheo.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name iorheo -section 8rheolef > iorheo.8rheolef cat pretty_name.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name pretty_name -section 8rheolef > pretty_name.8rheolef cat rheostream.h | ../../config/col -b -x | ../../config/doc2texi -file util/lib/rheostream.h -node "rheostream class,,, Classes" > rheostream.2texi cat catchmark.h | ../../config/col -b -x | ../../config/doc2texi -file util/lib/catchmark.h -node "catchmark algorithm,,, Algorithms" > catchmark.4texi cat smart_pointer.h | ../../config/col -b -x | ../../config/doc2texi -file util/lib/smart_pointer.h -node "smart_pointer iclass,,, Internal classes" > smart_pointer.7texi cat heap_allocator.h | ../../config/col -b -x | ../../config/doc2texi -file util/lib/heap_allocator.h -node "heap_allocator iclass,,, Internal classes" > heap_allocator.7texi cat stack_allocator.h | ../../config/col -b -x | ../../config/doc2texi -file util/lib/stack_allocator.h -node "stack_allocator iclass,,, Internal classes" > stack_allocator.7texi cat Vector.h | ../../config/col -b -x | ../../config/doc2texi -file util/lib/Vector.h -node "Vector iclass,,, Internal classes" > Vector.7texi cat iorheo.h | ../../config/col -b -x | ../../config/doc2texi -file util/lib/iorheo.h -node "iorheo ialgorithm,,, Internal algorithms" > iorheo.8texi cat pretty_name.h | ../../config/col -b -x | ../../config/doc2texi -file util/lib/pretty_name.h -node "pretty_name ialgorithm,,, Internal algorithms" > pretty_name.8texi Making all in tst make[3]: Nothing to be done for 'all-am'. Making all in skit Making all in plib2 linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/csr.h ln -s /<>/skit/plib2/csr.h csr.h /bin/rm -f /<>/include/rheolef/vec.h ln -s /<>/skit/plib2/vec.h vec.h /bin/rm -f /<>/include/rheolef/asr.h ln -s /<>/skit/plib2/asr.h asr.h /bin/rm -f /<>/include/rheolef/eye.h ln -s /<>/skit/plib2/eye.h eye.h /bin/rm -f /<>/include/rheolef/dia.h ln -s /<>/skit/plib2/dia.h dia.h /bin/rm -f /<>/include/rheolef/disarray.h ln -s /<>/skit/plib2/disarray.h disarray.h /bin/rm -f /<>/include/rheolef/solver.h ln -s /<>/skit/plib2/solver.h solver.h /bin/rm -f /<>/include/rheolef/solver_option_type.h ln -s /<>/skit/plib2/solver_option_type.h solver_option_type.h /bin/rm -f /<>/include/rheolef/solver_abtb.h ln -s /<>/skit/plib2/solver_abtb.h solver_abtb.h /bin/rm -f /<>/include/rheolef/diststream.h ln -s /<>/skit/plib2/diststream.h diststream.h /bin/rm -f /<>/include/rheolef/distributor.h ln -s /<>/skit/plib2/distributor.h distributor.h /bin/rm -f /<>/include/rheolef/environment.h ln -s /<>/skit/plib2/environment.h environment.h /bin/rm -f /<>/include/rheolef/dis_time.h ln -s /<>/skit/plib2/dis_time.h dis_time.h /bin/rm -f /<>/include/rheolef/puzawa.h ln -s /<>/skit/plib2/puzawa.h puzawa.h /bin/rm -f /<>/include/rheolef/pcg.h ln -s /<>/skit/plib2/pcg.h pcg.h /bin/rm -f /<>/include/rheolef/pgmres.h ln -s /<>/skit/plib2/pgmres.h pgmres.h /bin/rm -f /<>/include/rheolef/pminres.h ln -s /<>/skit/plib2/pminres.h pminres.h /bin/rm -f /<>/include/rheolef/mixed_solver.h ln -s /<>/skit/plib2/mixed_solver.h mixed_solver.h /bin/rm -f /<>/include/rheolef/diag.h ln -s /<>/skit/plib2/diag.h diag.h /bin/rm -f /<>/include/rheolef/mpi_assembly_begin.h ln -s /<>/skit/plib2/mpi_assembly_begin.h mpi_assembly_begin.h /bin/rm -f /<>/include/rheolef/mpi_assembly_end.h ln -s /<>/skit/plib2/mpi_assembly_end.h mpi_assembly_end.h /bin/rm -f /<>/include/rheolef/mpi_scatter_init.h ln -s /<>/skit/plib2/mpi_scatter_init.h mpi_scatter_init.h /bin/rm -f /<>/include/rheolef/mpi_scatter_begin.h ln -s /<>/skit/plib2/mpi_scatter_begin.h mpi_scatter_begin.h /bin/rm -f /<>/include/rheolef/mpi_scatter_end.h ln -s /<>/skit/plib2/mpi_scatter_end.h mpi_scatter_end.h /bin/rm -f /<>/include/rheolef/msg_from_context_pattern.h ln -s /<>/skit/plib2/msg_from_context_pattern.h msg_from_context_pattern.h /bin/rm -f /<>/include/rheolef/msg_from_context_indices.h ln -s /<>/skit/plib2/msg_from_context_indices.h msg_from_context_indices.h /bin/rm -f /<>/include/rheolef/msg_to_context.h ln -s /<>/skit/plib2/msg_to_context.h msg_to_context.h /bin/rm -f /<>/include/rheolef/msg_local_context.h ln -s /<>/skit/plib2/msg_local_context.h msg_local_context.h /bin/rm -f /<>/include/rheolef/msg_local_optimize.h ln -s /<>/skit/plib2/msg_local_optimize.h msg_local_optimize.h /bin/rm -f /<>/include/rheolef/msg_left_permutation_apply.h ln -s /<>/skit/plib2/msg_left_permutation_apply.h msg_left_permutation_apply.h /bin/rm -f /<>/include/rheolef/msg_right_permutation_apply.h ln -s /<>/skit/plib2/msg_right_permutation_apply.h msg_right_permutation_apply.h /bin/rm -f /<>/include/rheolef/msg_both_permutation_apply.h ln -s /<>/skit/plib2/msg_both_permutation_apply.h msg_both_permutation_apply.h /bin/rm -f /<>/include/rheolef/index_set.h ln -s /<>/skit/plib2/index_set.h index_set.h /bin/rm -f /<>/include/rheolef/pair_set.h ln -s /<>/skit/plib2/pair_set.h pair_set.h /bin/rm -f /<>/include/rheolef/mpi_pair_datatype.h ln -s /<>/skit/plib2/mpi_pair_datatype.h mpi_pair_datatype.h /bin/rm -f /<>/include/rheolef/msg_sort_with_permutation.h ln -s /<>/skit/plib2/msg_sort_with_permutation.h msg_sort_with_permutation.h /bin/rm -f /<>/include/rheolef/csr_amux.h ln -s /<>/skit/plib2/csr_amux.h csr_amux.h /bin/rm -f /<>/include/rheolef/csr_cumul_trans_mult.h ln -s /<>/skit/plib2/csr_cumul_trans_mult.h csr_cumul_trans_mult.h /bin/rm -f /<>/include/rheolef/asr_to_csr.h ln -s /<>/skit/plib2/asr_to_csr.h asr_to_csr.h /bin/rm -f /<>/include/rheolef/csr_to_asr.h ln -s /<>/skit/plib2/csr_to_asr.h csr_to_asr.h /bin/rm -f /<>/include/rheolef/asr_to_csr_dist_logical.h ln -s /<>/skit/plib2/asr_to_csr_dist_logical.h asr_to_csr_dist_logical.h /bin/rm -f /<>/include/rheolef/disarray_seq.icc ln -s /<>/skit/plib2/disarray_seq.icc disarray_seq.icc /bin/rm -f /<>/include/rheolef/disarray_mpi.icc ln -s /<>/skit/plib2/disarray_mpi.icc disarray_mpi.icc /bin/rm -f /<>/include/rheolef/scatter_message.icc ln -s /<>/skit/plib2/scatter_message.icc scatter_message.icc /bin/rm -f /<>/include/rheolef/container_traits.h ln -s /<>/skit/plib2/container_traits.h container_traits.h /bin/rm -f /<>/include/rheolef/skit.h ln -s /<>/skit/plib2/skit.h skit.h /bin/rm -f /<>/include/rheolef/vec_expr_v2.h ln -s /<>/skit/plib2/vec_expr_v2.h vec_expr_v2.h /bin/rm -f /<>/include/rheolef/expr_utilities.h ln -s /<>/skit/plib2/expr_utilities.h expr_utilities.h /bin/rm -f /<>/include/rheolef/csr_vec_expr.h ln -s /<>/skit/plib2/csr_vec_expr.h csr_vec_expr.h /bin/rm -f /<>/include/rheolef/vec_concat.h ln -s /<>/skit/plib2/vec_concat.h vec_concat.h /bin/rm -f /<>/include/rheolef/csr_concat.h ln -s /<>/skit/plib2/csr_concat.h csr_concat.h /bin/rm -f /<>/include/rheolef/vec_range.h ln -s /<>/skit/plib2/vec_range.h vec_range.h /bin/rm -f /<>/include/rheolef/scalar_traits.h ln -s /<>/skit/plib2/scalar_traits.h scalar_traits.h /bin/rm -f /<>/include/rheolef/vector_of_iterator.h ln -s /<>/skit/plib2/vector_of_iterator.h vector_of_iterator.h /bin/rm -f /<>/include/rheolef/disarray_store.h ln -s /<>/skit/plib2/disarray_store.h disarray_store.h /bin/rm -f /<>/include/rheolef/scatter_message.h ln -s /<>/skit/plib2/scatter_message.h scatter_message.h /bin/rm -f /<>/include/rheolef/dis_macros.h ln -s /<>/skit/plib2/dis_macros.h dis_macros.h /bin/rm -f /<>/include/rheolef/dis_accumulate.h ln -s /<>/skit/plib2/dis_accumulate.h dis_accumulate.h /bin/rm -f /<>/include/rheolef/dis_inner_product.h ln -s /<>/skit/plib2/dis_inner_product.h dis_inner_product.h /bin/rm -f /<>/include/rheolef/functional_sgi_ext.h ln -s /<>/skit/plib2/functional_sgi_ext.h functional_sgi_ext.h /bin/rm -f /<>/include/rheolef/get_pointer_from_iterator.h ln -s /<>/skit/plib2/get_pointer_from_iterator.h get_pointer_from_iterator.h /bin/rm -f /<>/include/rheolef/load_chunk.h ln -s /<>/skit/plib2/load_chunk.h load_chunk.h /bin/rm -f /<>/include/rheolef/msg_util.h ln -s /<>/skit/plib2/msg_util.h msg_util.h /bin/rm -f /<>/include/rheolef/distributed.h ln -s /<>/skit/plib2/distributed.h distributed.h /bin/rm -f /<>/include/rheolef/ldlt_seq_builtin.h ln -s /<>/skit/plib2/ldlt_seq_builtin.h ldlt_seq_builtin.h linking done. make all-am /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT index_set.lo -MD -MP -MF .deps/index_set.Tpo -c -o index_set.lo index_set.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT index_set.lo -MD -MP -MF .deps/index_set.Tpo -c index_set.cc -fPIC -DPIC -o .libs/index_set.o mv -f .deps/index_set.Tpo .deps/index_set.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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solver_trilinos_ifpack.lo -MD -MP -MF .deps/solver_trilinos_ifpack.Tpo -c -o solver_trilinos_ifpack.lo solver_trilinos_ifpack.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_trilinos_ifpack.lo -MD -MP -MF .deps/solver_trilinos_ifpack.Tpo -c solver_trilinos_ifpack.cc -fPIC -DPIC -o .libs/solver_trilinos_ifpack.o mv -f .deps/solver_trilinos_ifpack.Tpo .deps/solver_trilinos_ifpack.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_no_trilinos_ifpack.lo -MD -MP -MF .deps/solver_no_trilinos_ifpack.Tpo -c -o solver_no_trilinos_ifpack.lo solver_no_trilinos_ifpack.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_no_trilinos_ifpack.lo -MD -MP -MF .deps/solver_no_trilinos_ifpack.Tpo -c solver_no_trilinos_ifpack.cc -fPIC -DPIC -o .libs/solver_no_trilinos_ifpack.o mv -f .deps/solver_no_trilinos_ifpack.Tpo .deps/solver_no_trilinos_ifpack.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_pastix_seq.lo -MD -MP -MF .deps/solver_pastix_seq.Tpo -c -o solver_pastix_seq.lo solver_pastix_seq.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_pastix_seq.lo -MD -MP -MF .deps/solver_pastix_seq.Tpo -c solver_pastix_seq.cc -fPIC -DPIC -o .libs/solver_pastix_seq.o mv -f .deps/solver_pastix_seq.Tpo .deps/solver_pastix_seq.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_pastix_mpi.lo -MD -MP -MF .deps/solver_pastix_mpi.Tpo -c -o solver_pastix_mpi.lo solver_pastix_mpi.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_pastix_mpi.lo -MD -MP -MF .deps/solver_pastix_mpi.Tpo -c solver_pastix_mpi.cc -fPIC -DPIC -o .libs/solver_pastix_mpi.o mv -f .deps/solver_pastix_mpi.Tpo .deps/solver_pastix_mpi.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_abtb.lo -MD -MP -MF .deps/solver_abtb.Tpo -c -o solver_abtb.lo solver_abtb.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT solver_abtb.lo -MD -MP -MF .deps/solver_abtb.Tpo -c solver_abtb.cc -fPIC -DPIC -o .libs/solver_abtb.o mv -f .deps/solver_abtb.Tpo .deps/solver_abtb.Plo /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o libskit.la index_set.lo environment.lo distributor.lo diststream.lo disarray_seq_inst.lo disarray_mpi_inst.lo csr_seq.lo csr_mpi.lo csr.lo asr.lo mm_io.lo vec_concat.lo csr_concat.lo ldlt_seq_builtin.lo solver.lo solver_wrapper.lo solver_ldlt_builtin.lo solver_cholmod.lo solver_umfpack.lo solver_mumps.lo solver_trilinos_ifpack.lo solver_no_trilinos_ifpack.lo solver_pastix_seq.lo solver_pastix_mpi.lo solver_abtb.lo libtool: link: ar cru .libs/libskit.a .libs/index_set.o .libs/environment.o .libs/distributor.o .libs/diststream.o .libs/disarray_seq_inst.o .libs/disarray_mpi_inst.o .libs/csr_seq.o .libs/csr_mpi.o .libs/csr.o .libs/asr.o .libs/mm_io.o .libs/vec_concat.o .libs/csr_concat.o .libs/ldlt_seq_builtin.o .libs/solver.o .libs/solver_wrapper.o .libs/solver_ldlt_builtin.o .libs/solver_cholmod.o .libs/solver_umfpack.o .libs/solver_mumps.o .libs/solver_trilinos_ifpack.o .libs/solver_no_trilinos_ifpack.o .libs/solver_pastix_seq.o .libs/solver_pastix_mpi.o .libs/solver_abtb.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libskit.a libtool: link: ( cd ".libs" && rm -f "libskit.la" && ln -s "../libskit.la" "libskit.la" ) cat csr.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name csr -section 2rheolef > csr.2rheolef cat vec.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name vec -section 2rheolef > vec.2rheolef cat asr.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name asr -section 2rheolef > asr.2rheolef cat eye.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name eye -section 2rheolef > eye.2rheolef cat dia.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name dia -section 2rheolef > dia.2rheolef cat disarray.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name disarray -section 2rheolef > disarray.2rheolef cat solver.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name solver -section 2rheolef > solver.2rheolef cat solver_option_type.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name solver_option_type -section 2rheolef > solver_option_type.2rheolef cat solver_abtb.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name solver_abtb -section 2rheolef > solver_abtb.2rheolef cat diststream.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name diststream -section 2rheolef > diststream.2rheolef cat distributor.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name distributor -section 2rheolef > distributor.2rheolef cat environment.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name environment -section 2rheolef > environment.2rheolef cat dis_time.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name dis_time -section 4rheolef > dis_time.4rheolef cat puzawa.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name puzawa -section 4rheolef > puzawa.4rheolef cat pcg.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name pcg -section 4rheolef > pcg.4rheolef cat pgmres.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name pgmres -section 4rheolef > pgmres.4rheolef cat pminres.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name pminres -section 4rheolef > pminres.4rheolef cat mixed_solver.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name mixed_solver -section 4rheolef > mixed_solver.4rheolef cat diag.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name diag -section 4rheolef > diag.4rheolef cat index_set.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name index_set -section 7rheolef > index_set.7rheolef cat pair_set.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name pair_set -section 7rheolef > pair_set.7rheolef cat csr.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/csr.h -node "csr class,,, Classes" > csr.2texi cat vec.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/vec.h -node "vec class,,, Classes" > vec.2texi cat asr.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/asr.h -node "asr class,,, Classes" > asr.2texi cat eye.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/eye.h -node "eye class,,, Classes" > eye.2texi cat dia.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/dia.h -node "dia class,,, Classes" > dia.2texi cat disarray.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/disarray.h -node "disarray class,,, Classes" > disarray.2texi cat solver.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/solver.h -node "solver class,,, Classes" > solver.2texi cat solver_option_type.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/solver_option_type.h -node "solver_option_type class,,, Classes" > solver_option_type.2texi cat solver_abtb.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/solver_abtb.h -node "solver_abtb class,,, Classes" > solver_abtb.2texi cat diststream.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/diststream.h -node "diststream class,,, Classes" > diststream.2texi cat distributor.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/distributor.h -node "distributor class,,, Classes" > distributor.2texi cat environment.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/environment.h -node "environment class,,, Classes" > environment.2texi cat dis_time.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/dis_time.h -node "dis_time algorithm,,, Algorithms" > dis_time.4texi cat puzawa.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/puzawa.h -node "puzawa algorithm,,, Algorithms" > puzawa.4texi cat pcg.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/pcg.h -node "pcg algorithm,,, Algorithms" > pcg.4texi cat pgmres.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/pgmres.h -node "pgmres algorithm,,, Algorithms" > pgmres.4texi cat pminres.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/pminres.h -node "pminres algorithm,,, Algorithms" > pminres.4texi cat mixed_solver.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/mixed_solver.h -node "mixed_solver algorithm,,, Algorithms" > mixed_solver.4texi cat diag.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/diag.h -node "diag algorithm,,, Algorithms" > diag.4texi cat index_set.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/index_set.h -node "index_set iclass,,, Internal classes" > index_set.7texi cat pair_set.h | ../../config/col -b -x | ../../config/doc2texi -file skit/plib2/pair_set.h -node "pair_set iclass,,, Internal classes" > pair_set.7texi Making all in pbin g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT csr.o -MD -MP -MF .deps/csr.Tpo -c -o csr.o csr.cc mv -f .deps/csr.Tpo .deps/csr.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o csr csr.o ../../skit/plib2/libskit.la ../../util/lib/libutil.la -lumfpack -lamd -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o csr csr.o ../../skit/plib2/.libs/libskit.a ../../util/lib/.libs/libutil.a -lboost_iostreams -lumfpack -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi cat csr.cc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name csr -section 1rheolef > csr.1rheolef cat csr.cc | ../../config/col -b -x | ../../config/doc2texi -file skit/pbin/csr.cc -node "csr command,,, Commands" > csr.1texi Making all in ptst2 make[3]: Nothing to be done for 'all'. make[3]: Nothing to be done for 'all-am'. Making all in nfem Making all in data make[3]: Nothing to be done for 'all'. Making all in quadrature linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/sqr.icc ln -s /<>/nfem/quadrature/sqr.icc sqr.icc /bin/rm -f /<>/include/rheolef/jacobi.icc ln -s /<>/nfem/quadrature/jacobi.icc jacobi.icc /bin/rm -f /<>/include/rheolef/jacobi_roots.icc ln -s /<>/nfem/quadrature/jacobi_roots.icc jacobi_roots.icc /bin/rm -f /<>/include/rheolef/gamma.icc ln -s /<>/nfem/quadrature/gamma.icc gamma.icc /bin/rm -f /<>/include/rheolef/gauss_jacobi.icc ln -s /<>/nfem/quadrature/gauss_jacobi.icc gauss_jacobi.icc /bin/rm -f /<>/include/rheolef/gauss_radau_jacobi.icc ln -s /<>/nfem/quadrature/gauss_radau_jacobi.icc gauss_radau_jacobi.icc /bin/rm -f /<>/include/rheolef/gauss_lobatto_jacobi.icc ln -s /<>/nfem/quadrature/gauss_lobatto_jacobi.icc gauss_lobatto_jacobi.icc /bin/rm -f /<>/include/rheolef/gauss_chebyschev.icc ln -s /<>/nfem/quadrature/gauss_chebyschev.icc gauss_chebyschev.icc /bin/rm -f /<>/include/rheolef/gauss_radau_chebyschev.icc ln -s /<>/nfem/quadrature/gauss_radau_chebyschev.icc gauss_radau_chebyschev.icc /bin/rm -f /<>/include/rheolef/gauss_lobatto_chebyschev.icc ln -s /<>/nfem/quadrature/gauss_lobatto_chebyschev.icc gauss_lobatto_chebyschev.icc /bin/rm -f /<>/include/rheolef/gauss_legendre_check.icc ln -s /<>/nfem/quadrature/gauss_legendre_check.icc gauss_legendre_check.icc /bin/rm -f /<>/include/rheolef/gauss_chebyschev_check.icc ln -s /<>/nfem/quadrature/gauss_chebyschev_check.icc gauss_chebyschev_check.icc /bin/rm -f /<>/include/rheolef/gauss_jacobi_check.icc ln -s /<>/nfem/quadrature/gauss_jacobi_check.icc gauss_jacobi_check.icc /bin/rm -f /<>/include/rheolef/sqr.h ln -s /<>/nfem/quadrature/sqr.h sqr.h /bin/rm -f /<>/include/rheolef/jacobi.h ln -s /<>/nfem/quadrature/jacobi.h jacobi.h /bin/rm -f /<>/include/rheolef/jacobi_roots.h ln -s /<>/nfem/quadrature/jacobi_roots.h jacobi_roots.h /bin/rm -f /<>/include/rheolef/gamma.h ln -s /<>/nfem/quadrature/gamma.h gamma.h /bin/rm -f /<>/include/rheolef/gauss_jacobi.h ln -s /<>/nfem/quadrature/gauss_jacobi.h gauss_jacobi.h /bin/rm -f /<>/include/rheolef/gauss_radau_jacobi.h ln -s /<>/nfem/quadrature/gauss_radau_jacobi.h gauss_radau_jacobi.h /bin/rm -f /<>/include/rheolef/gauss_lobatto_jacobi.h ln -s /<>/nfem/quadrature/gauss_lobatto_jacobi.h gauss_lobatto_jacobi.h /bin/rm -f /<>/include/rheolef/gauss_chebyschev.h ln -s /<>/nfem/quadrature/gauss_chebyschev.h gauss_chebyschev.h /bin/rm -f /<>/include/rheolef/gauss_radau_chebyschev.h ln -s /<>/nfem/quadrature/gauss_radau_chebyschev.h gauss_radau_chebyschev.h /bin/rm -f /<>/include/rheolef/gauss_lobatto_chebyschev.h ln -s /<>/nfem/quadrature/gauss_lobatto_chebyschev.h gauss_lobatto_chebyschev.h /bin/rm -f /<>/include/rheolef/gauss_legendre_check.h ln -s /<>/nfem/quadrature/gauss_legendre_check.h gauss_legendre_check.h /bin/rm -f /<>/include/rheolef/gauss_chebyschev_check.h ln -s /<>/nfem/quadrature/gauss_chebyschev_check.h gauss_chebyschev_check.h /bin/rm -f /<>/include/rheolef/gauss_jacobi_check.h ln -s /<>/nfem/quadrature/gauss_jacobi_check.h gauss_jacobi_check.h /bin/rm -f /<>/include/rheolef/tqli.h ln -s /<>/nfem/quadrature/tqli.h tqli.h /bin/rm -f /<>/include/rheolef/pythag.h ln -s /<>/nfem/quadrature/pythag.h pythag.h linking done. make all-am make[4]: Nothing to be done for 'all-am'. Making all in geo_element linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/point.h ln -s /<>/nfem/geo_element/point.h point.h /bin/rm -f /<>/include/rheolef/tensor.h ln -s /<>/nfem/geo_element/tensor.h tensor.h /bin/rm -f /<>/include/rheolef/tensor3.h ln -s /<>/nfem/geo_element/tensor3.h tensor3.h /bin/rm -f /<>/include/rheolef/tensor4.h ln -s /<>/nfem/geo_element/tensor4.h tensor4.h /bin/rm -f /<>/include/rheolef/tensor-eig3.h ln -s /<>/nfem/geo_element/tensor-eig3.h tensor-eig3.h /bin/rm -f /<>/include/rheolef/tensor-svd-algo.h ln -s /<>/nfem/geo_element/tensor-svd-algo.h tensor-svd-algo.h /bin/rm -f /<>/include/rheolef/undeterminated.h ln -s /<>/nfem/geo_element/undeterminated.h undeterminated.h /bin/rm -f /<>/include/rheolef/reference_element.h ln -s /<>/nfem/geo_element/reference_element.h reference_element.h /bin/rm -f /<>/include/rheolef/reference_element_face_transformation.h ln -s /<>/nfem/geo_element/reference_element_face_transformation.h reference_element_face_transformation.h /bin/rm -f /<>/include/rheolef/geo_element.h ln -s /<>/nfem/geo_element/geo_element.h geo_element.h /bin/rm -f /<>/include/rheolef/geo_element_v1.h ln -s /<>/nfem/geo_element/geo_element_v1.h geo_element_v1.h /bin/rm -f /<>/include/rheolef/geo_element_v4.h ln -s /<>/nfem/geo_element/geo_element_v4.h geo_element_v4.h /bin/rm -f /<>/include/rheolef/hack_array.h ln -s /<>/nfem/geo_element/hack_array.h hack_array.h /bin/rm -f /<>/include/rheolef/hack_array_seq.icc ln -s /<>/nfem/geo_element/hack_array_seq.icc hack_array_seq.icc /bin/rm -f /<>/include/rheolef/hack_array_mpi.icc ln -s /<>/nfem/geo_element/hack_array_mpi.icc hack_array_mpi.icc /bin/rm -f /<>/include/rheolef/geo_element_indirect.h ln -s /<>/nfem/geo_element/geo_element_indirect.h geo_element_indirect.h /bin/rm -f /<>/include/rheolef/quadrature.h ln -s /<>/nfem/geo_element/quadrature.h quadrature.h /bin/rm -f /<>/include/rheolef/quadrature_option_type.h ln -s /<>/nfem/geo_element/quadrature_option_type.h quadrature_option_type.h /bin/rm -f /<>/include/rheolef/tiny_matvec.h ln -s /<>/nfem/geo_element/tiny_matvec.h tiny_matvec.h /bin/rm -f /<>/include/rheolef/tiny_lu.h ln -s /<>/nfem/geo_element/tiny_lu.h tiny_lu.h /bin/rm -f /<>/include/rheolef/cgal_kernel.h ln -s /<>/nfem/geo_element/cgal_kernel.h cgal_kernel.h /bin/rm -f /<>/include/rheolef/cgal_kernel_float128.h ln -s /<>/nfem/geo_element/cgal_kernel_float128.h cgal_kernel_float128.h /bin/rm -f /<>/include/rheolef/cgal_traits.h ln -s /<>/nfem/geo_element/cgal_traits.h cgal_traits.h linking done. g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT cxx_reference_element.o -MD -MP -MF .deps/cxx_reference_element.Tpo -c -o cxx_reference_element.o cxx_reference_element.cc mv -f .deps/cxx_reference_element.Tpo .deps/cxx_reference_element.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o cxx_reference_element cxx_reference_element.o ../../skit/plib2/libskit.la ../../util/lib/libutil.la -lCGAL -lgmp -lumfpack -lamd -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o cxx_reference_element cxx_reference_element.o ../../skit/plib2/.libs/libskit.a ../../util/lib/.libs/libutil.a -lboost_iostreams -lCGAL -lgmp -lumfpack -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi ./cxx_reference_element > ./reference_element_declare.cc.new ! file "reference_element_declare.cc" unchanged. make all-am /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT point.lo -MD -MP -MF .deps/point.Tpo -c -o point.lo point.cc libtool: 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-I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT point_predicate.lo -MD -MP -MF .deps/point_predicate.Tpo -c point_predicate.cc -fPIC -DPIC -o .libs/point_predicate.o mv -f .deps/point_predicate.Tpo .deps/point_predicate.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT tensor.lo -MD -MP -MF .deps/tensor.Tpo -c -o tensor.lo tensor.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time 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g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -frounding-math -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT libpredicates_la-geo_element_predicate.lo -MD -MP -MF .deps/libpredicates_la-geo_element_predicate.Tpo -c geo_element_predicate.cc -fPIC -DPIC -o .libs/libpredicates_la-geo_element_predicate.o mv -f .deps/libpredicates_la-geo_element_predicate.Tpo .deps/libpredicates_la-geo_element_predicate.Plo /bin/bash ../../libtool --tag=CXX --mode=link g++ -frounding-math -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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-fr .libs/libgeo_element.lax libtool: link: ( cd ".libs" && rm -f "libgeo_element.la" && ln -s "../libgeo_element.la" "libgeo_element.la" ) cat ./point.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name point -section 2rheolef > point.2rheolef cat tensor.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name tensor -section 2rheolef > tensor.2rheolef cat tensor3.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name tensor3 -section 2rheolef > tensor3.2rheolef cat tensor4.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name tensor4 -section 2rheolef > tensor4.2rheolef cat quadrature_option_type.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name quadrature_option_type -section 2rheolef > quadrature_option_type.2rheolef cat quadrature.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name quadrature -section 7rheolef > quadrature.7rheolef cat reference_element.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name reference_element -section 7rheolef > reference_element.7rheolef cat ./geo_element_v4.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name geo_element -section 7rheolef > geo_element.7rheolef cat hack_array.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name hack_array -section 7rheolef > hack_array.7rheolef cat ./point.icc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name point -section 7rheolef > point.7rheolef cat edge.icc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name edge -section 7rheolef > edge.7rheolef cat triangle.icc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name triangle -section 7rheolef > triangle.7rheolef cat quadrangle.icc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name quadrangle -section 7rheolef > quadrangle.7rheolef cat tetrahedron.icc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name tetrahedron -section 7rheolef > tetrahedron.7rheolef cat prism.icc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name prism -section 7rheolef > prism.7rheolef cat hexahedron.icc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name hexahedron -section 7rheolef > hexahedron.7rheolef ./cxx_reference_element > ./reference_element_declare.cc.new ! file "reference_element_declare.cc" unchanged. cat ./point.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/point.h -node "point class,,, Classes" > point.2texi cat tensor.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/tensor.h -node "tensor class,,, Classes" > tensor.2texi cat tensor3.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/tensor3.h -node "tensor3 class,,, Classes" > tensor3.2texi cat tensor4.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/tensor4.h -node "tensor4 class,,, Classes" > tensor4.2texi cat quadrature_option_type.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/quadrature_option_type.h -node "quadrature_option_type class,,, Classes" > quadrature_option_type.2texi cat quadrature.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/quadrature.h -node "quadrature iclass,,, Internal classes" > quadrature.7texi cat reference_element.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/reference_element.h -node "reference_element iclass,,, Internal classes" > reference_element.7texi cat ./geo_element_v4.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/geo_element_v4.h -node "geo_element iclass,,, Internal classes" > geo_element.7texi cat hack_array.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/hack_array.h -node "hack_array iclass,,, Internal classes" > hack_array.7texi cat ./point.icc | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/point.icc -node "point iclass,,, Internal classes" > point.7texi cat edge.icc | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/edge.icc -node "edge iclass,,, Internal classes" > edge.7texi cat triangle.icc | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/triangle.icc -node "triangle iclass,,, Internal classes" > triangle.7texi cat quadrangle.icc | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/quadrangle.icc -node "quadrangle iclass,,, Internal classes" > quadrangle.7texi cat tetrahedron.icc | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/tetrahedron.icc -node "tetrahedron iclass,,, Internal classes" > tetrahedron.7texi cat prism.icc | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/prism.icc -node "prism iclass,,, Internal classes" > prism.7texi cat hexahedron.icc | ../../config/col -b -x | ../../config/doc2texi -file nfem/geo_element/hexahedron.icc -node "hexahedron iclass,,, Internal classes" > hexahedron.7texi Making all in plib linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/rheolef.h ln -s /<>/nfem/plib/rheolef.h rheolef.h /bin/rm -f /<>/include/rheolef/rheolef_seq.h ln -s /<>/nfem/plib/rheolef_seq.h rheolef_seq.h /bin/rm -f /<>/include/rheolef/geo.h ln -s /<>/nfem/plib/geo.h geo.h /bin/rm -f /<>/include/rheolef/space.h ln -s /<>/nfem/plib/space.h space.h /bin/rm -f /<>/include/rheolef/field.h ln -s /<>/nfem/plib/field.h field.h /bin/rm -f /<>/include/rheolef/form.h ln -s /<>/nfem/plib/form.h form.h /bin/rm -f /<>/include/rheolef/branch.h ln -s /<>/nfem/plib/branch.h branch.h /bin/rm -f /<>/include/rheolef/characteristic.h ln -s /<>/nfem/plib/characteristic.h characteristic.h /bin/rm -f /<>/include/rheolef/band.h ln -s /<>/nfem/plib/band.h band.h /bin/rm -f /<>/include/rheolef/test.h ln -s /<>/nfem/plib/test.h test.h /bin/rm -f /<>/include/rheolef/functor.h ln -s /<>/nfem/plib/functor.h functor.h /bin/rm -f /<>/include/rheolef/field_functor.h ln -s /<>/nfem/plib/field_functor.h field_functor.h /bin/rm -f /<>/include/rheolef/form_option_type.h ln -s /<>/nfem/plib/form_option_type.h form_option_type.h /bin/rm -f /<>/include/rheolef/interpolate.h ln -s /<>/nfem/plib/interpolate.h interpolate.h /bin/rm -f /<>/include/rheolef/riesz.h ln -s /<>/nfem/plib/riesz.h riesz.h /bin/rm -f /<>/include/rheolef/integrate.h ln -s /<>/nfem/plib/integrate.h integrate.h /bin/rm -f /<>/include/rheolef/newton.h ln -s /<>/nfem/plib/newton.h newton.h /bin/rm -f /<>/include/rheolef/damped_newton.h ln -s /<>/nfem/plib/damped_newton.h damped_newton.h /bin/rm -f /<>/include/rheolef/adapt.h ln -s /<>/nfem/plib/adapt.h adapt.h /bin/rm -f /<>/include/rheolef/level_set.h ln -s /<>/nfem/plib/level_set.h level_set.h /bin/rm -f /<>/include/rheolef/compose.h ln -s /<>/nfem/plib/compose.h compose.h /bin/rm -f /<>/include/rheolef/limiter.h ln -s /<>/nfem/plib/limiter.h limiter.h /bin/rm -f /<>/include/rheolef/geo_domain.h ln -s /<>/nfem/plib/geo_domain.h geo_domain.h /bin/rm -f /<>/include/rheolef/domain_indirect.h ln -s /<>/nfem/plib/domain_indirect.h domain_indirect.h /bin/rm -f /<>/include/rheolef/geo_domain_indirect.h ln -s /<>/nfem/plib/geo_domain_indirect.h geo_domain_indirect.h /bin/rm -f /<>/include/rheolef/basis.h ln -s /<>/nfem/plib/basis.h basis.h /bin/rm -f /<>/include/rheolef/numbering.h ln -s /<>/nfem/plib/numbering.h numbering.h /bin/rm -f /<>/include/rheolef/point_util.h ln -s /<>/nfem/plib/point_util.h point_util.h /bin/rm -f /<>/include/rheolef/element_constant.h ln -s /<>/nfem/plib/element_constant.h element_constant.h /bin/rm -f /<>/include/rheolef/geo_header.h ln -s /<>/nfem/plib/geo_header.h geo_header.h /bin/rm -f /<>/include/rheolef/geo_size.h ln -s /<>/nfem/plib/geo_size.h geo_size.h /bin/rm -f /<>/include/rheolef/geo_locate.h ln -s /<>/nfem/plib/geo_locate.h geo_locate.h /bin/rm -f /<>/include/rheolef/geo_trace_ray_boundary.h ln -s /<>/nfem/plib/geo_trace_ray_boundary.h geo_trace_ray_boundary.h /bin/rm -f /<>/include/rheolef/geo_nearest.h ln -s /<>/nfem/plib/geo_nearest.h geo_nearest.h /bin/rm -f /<>/include/rheolef/geo_element_curved_ball.h ln -s /<>/nfem/plib/geo_element_curved_ball.h geo_element_curved_ball.h /bin/rm -f /<>/include/rheolef/basis_on_pointset.h ln -s /<>/nfem/plib/basis_on_pointset.h basis_on_pointset.h /bin/rm -f /<>/include/rheolef/piola.h ln -s /<>/nfem/plib/piola.h piola.h /bin/rm -f /<>/include/rheolef/inv_piola.h ln -s /<>/nfem/plib/inv_piola.h inv_piola.h /bin/rm -f /<>/include/rheolef/vf_tag.h ln -s /<>/nfem/plib/vf_tag.h vf_tag.h /bin/rm -f /<>/include/rheolef/space_constant.h ln -s /<>/nfem/plib/space_constant.h space_constant.h /bin/rm -f /<>/include/rheolef/space_constitution.h ln -s /<>/nfem/plib/space_constitution.h space_constitution.h /bin/rm -f /<>/include/rheolef/space_mult.h ln -s /<>/nfem/plib/space_mult.h space_mult.h /bin/rm -f /<>/include/rheolef/space_component.h ln -s /<>/nfem/plib/space_component.h space_component.h /bin/rm -f /<>/include/rheolef/field_component.h ln -s /<>/nfem/plib/field_component.h field_component.h /bin/rm -f /<>/include/rheolef/field_indirect.h ln -s /<>/nfem/plib/field_indirect.h field_indirect.h /bin/rm -f /<>/include/rheolef/field_evaluate.h ln -s /<>/nfem/plib/field_evaluate.h field_evaluate.h /bin/rm -f /<>/include/rheolef/field_expr_v2_utilities.h ln -s /<>/nfem/plib/field_expr_v2_utilities.h field_expr_v2_utilities.h /bin/rm -f /<>/include/rheolef/field_expr_v2_linear.h ln -s /<>/nfem/plib/field_expr_v2_linear.h field_expr_v2_linear.h /bin/rm -f /<>/include/rheolef/field_expr_v2_nonlinear.h ln -s /<>/nfem/plib/field_expr_v2_nonlinear.h field_expr_v2_nonlinear.h /bin/rm -f /<>/include/rheolef/field_expr_v2_nonlinear_terminal.h ln -s /<>/nfem/plib/field_expr_v2_nonlinear_terminal.h field_expr_v2_nonlinear_terminal.h /bin/rm -f /<>/include/rheolef/field_expr_v2_variational.h ln -s /<>/nfem/plib/field_expr_v2_variational.h field_expr_v2_variational.h /bin/rm -f /<>/include/rheolef/field_expr_v2_variational_terminal.h ln -s /<>/nfem/plib/field_expr_v2_variational_terminal.h field_expr_v2_variational_terminal.h /bin/rm -f /<>/include/rheolef/field_expr_v2_variational_tag.h ln -s /<>/nfem/plib/field_expr_v2_variational_tag.h field_expr_v2_variational_tag.h /bin/rm -f /<>/include/rheolef/field_expr_v2_value_assembly.h ln -s /<>/nfem/plib/field_expr_v2_value_assembly.h field_expr_v2_value_assembly.h /bin/rm -f /<>/include/rheolef/form_expr_v2_variational.h ln -s /<>/nfem/plib/form_expr_v2_variational.h form_expr_v2_variational.h /bin/rm -f /<>/include/rheolef/form_field_expr.h ln -s /<>/nfem/plib/form_field_expr.h form_field_expr.h /bin/rm -f /<>/include/rheolef/field_concat.h ln -s /<>/nfem/plib/field_concat.h field_concat.h /bin/rm -f /<>/include/rheolef/field_vf_assembly.h ln -s /<>/nfem/plib/field_vf_assembly.h field_vf_assembly.h /bin/rm -f /<>/include/rheolef/field_valarray.h ln -s /<>/nfem/plib/field_valarray.h field_valarray.h /bin/rm -f /<>/include/rheolef/operators.h ln -s /<>/nfem/plib/operators.h operators.h /bin/rm -f /<>/include/rheolef/rounder.h ln -s /<>/nfem/plib/rounder.h rounder.h /bin/rm -f /<>/include/rheolef/form_weighted.h ln -s /<>/nfem/plib/form_weighted.h form_weighted.h /bin/rm -f /<>/include/rheolef/form_concat.h ln -s /<>/nfem/plib/form_concat.h form_concat.h /bin/rm -f /<>/include/rheolef/form_vf_assembly.h ln -s /<>/nfem/plib/form_vf_assembly.h form_vf_assembly.h /bin/rm -f /<>/include/rheolef/integrate_numeric.icc ln -s /<>/nfem/plib/integrate_numeric.icc integrate_numeric.icc /bin/rm -f /<>/include/rheolef/iofem.h ln -s /<>/nfem/plib/iofem.h iofem.h /bin/rm -f /<>/include/rheolef/newton-backtrack.h ln -s /<>/nfem/plib/newton-backtrack.h newton-backtrack.h /bin/rm -f /<>/include/rheolef/damped-newton-generic.h ln -s /<>/nfem/plib/damped-newton-generic.h damped-newton-generic.h linking done. make all-am /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_header.lo -MD -MP -MF .deps/geo_header.Tpo -c -o geo_header.lo geo_header.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_header.lo -MD -MP -MF .deps/geo_header.Tpo -c geo_header.cc -fPIC -DPIC -o .libs/geo_header.o mv -f .deps/geo_header.Tpo .deps/geo_header.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_size.lo -MD -MP -MF .deps/geo_size.Tpo -c -o geo_size.lo geo_size.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_size.lo -MD -MP -MF .deps/geo_size.Tpo -c geo_size.cc -fPIC -DPIC -o .libs/geo_size.o mv -f .deps/geo_size.Tpo .deps/geo_size.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo.lo -MD -MP -MF .deps/geo.Tpo -c -o geo.lo geo.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo.lo -MD -MP -MF .deps/geo.Tpo -c geo.cc -fPIC -DPIC -o .libs/geo.o mv -f .deps/geo.Tpo .deps/geo.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_mpi.lo -MD -MP -MF .deps/geo_mpi.Tpo -c -o geo_mpi.lo geo_mpi.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_mpi.lo -MD -MP -MF .deps/geo_mpi.Tpo -c geo_mpi.cc -fPIC -DPIC -o .libs/geo_mpi.o mv -f .deps/geo_mpi.Tpo .deps/geo_mpi.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_seq_put.lo -MD -MP -MF .deps/geo_seq_put.Tpo -c -o geo_seq_put.lo geo_seq_put.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall 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-Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_mpi_put.lo -MD -MP -MF .deps/geo_mpi_put.Tpo -c geo_mpi_put.cc -fPIC -DPIC -o .libs/geo_mpi_put.o mv -f .deps/geo_mpi_put.Tpo .deps/geo_mpi_put.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_seq_get.lo -MD -MP -MF .deps/geo_seq_get.Tpo -c -o geo_seq_get.lo geo_seq_get.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_seq_get.lo -MD -MP -MF .deps/geo_seq_get.Tpo -c geo_seq_get.cc -fPIC -DPIC -o .libs/geo_seq_get.o mv -f .deps/geo_seq_get.Tpo .deps/geo_seq_get.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo_mpi_get.lo -MD -MP -MF .deps/geo_mpi_get.Tpo -c -o geo_mpi_get.lo geo_mpi_get.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -fno-strict-aliasing -I../../include -I../../skit/plib2 -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g 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.libs/interpolate.o .libs/form.o .libs/form_vf_assembly.o .libs/branch.o .libs/branch_seq_visu_gnuplot.o .libs/branch_seq_visu_vtk_paraview.o .libs/iofem.o .libs/adapt.o .libs/adapt_gmsh.o .libs/adapt_bamg.o .libs/level_set.o .libs/band.o .libs/limiter.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libfem.a libtool: link: ( cd ".libs" && rm -f "libfem.la" && ln -s "../libfem.la" "libfem.la" ) cat geo.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name geo -section 2rheolef > geo.2rheolef cat space.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name space -section 2rheolef > space.2rheolef cat field.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name field -section 2rheolef > field.2rheolef cat form.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name form -section 2rheolef > form.2rheolef cat branch.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name branch -section 2rheolef > branch.2rheolef cat characteristic.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name characteristic -section 2rheolef > characteristic.2rheolef cat band.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name band -section 2rheolef > band.2rheolef cat test.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name test -section 2rheolef > test.2rheolef cat functor.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name functor -section 2rheolef > functor.2rheolef cat field_functor.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name field_functor -section 2rheolef > field_functor.2rheolef cat form_option_type.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name form_option_type -section 2rheolef > form_option_type.2rheolef cat interpolate.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name interpolate -section 4rheolef > interpolate.4rheolef cat riesz.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name riesz -section 4rheolef > riesz.4rheolef cat integrate.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name integrate -section 4rheolef > integrate.4rheolef cat newton.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name newton -section 4rheolef > newton.4rheolef cat damped_newton.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name damped_newton -section 4rheolef > damped_newton.4rheolef cat adapt.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name adapt -section 4rheolef > adapt.4rheolef cat level_set.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name level_set -section 4rheolef > level_set.4rheolef cat compose.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name compose -section 4rheolef > compose.4rheolef cat limiter.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name limiter -section 4rheolef > limiter.4rheolef cat geo_domain.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name geo_domain -section 7rheolef > geo_domain.7rheolef cat domain_indirect.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name domain_indirect -section 7rheolef > domain_indirect.7rheolef cat geo_domain_indirect.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name geo_domain_indirect -section 7rheolef > geo_domain_indirect.7rheolef cat basis.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name basis -section 7rheolef > basis.7rheolef cat numbering.h | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name numbering -section 7rheolef > numbering.7rheolef cat geo.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/geo.h -node "geo class,,, Classes" > geo.2texi cat space.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/space.h -node "space class,,, Classes" > space.2texi cat field.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/field.h -node "field class,,, Classes" > field.2texi cat form.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/form.h -node "form class,,, Classes" > form.2texi cat branch.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/branch.h -node "branch class,,, Classes" > branch.2texi cat characteristic.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/characteristic.h -node "characteristic class,,, Classes" > characteristic.2texi cat band.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/band.h -node "band class,,, Classes" > band.2texi cat test.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/test.h -node "test class,,, Classes" > test.2texi cat functor.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/functor.h -node "functor class,,, Classes" > functor.2texi cat field_functor.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/field_functor.h -node "field_functor class,,, Classes" > field_functor.2texi cat form_option_type.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/form_option_type.h -node "form_option_type class,,, Classes" > form_option_type.2texi cat interpolate.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/interpolate.h -node "interpolate algorithm,,, Algorithms" > interpolate.4texi cat riesz.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/riesz.h -node "riesz algorithm,,, Algorithms" > riesz.4texi cat integrate.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/integrate.h -node "integrate algorithm,,, Algorithms" > integrate.4texi cat newton.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/newton.h -node "newton algorithm,,, Algorithms" > newton.4texi cat damped_newton.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/damped_newton.h -node "damped_newton algorithm,,, Algorithms" > damped_newton.4texi cat adapt.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/adapt.h -node "adapt algorithm,,, Algorithms" > adapt.4texi cat level_set.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/level_set.h -node "level_set algorithm,,, Algorithms" > level_set.4texi cat compose.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/compose.h -node "compose algorithm,,, Algorithms" > compose.4texi cat limiter.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/limiter.h -node "limiter algorithm,,, Algorithms" > limiter.4texi cat geo_domain.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/geo_domain.h -node "geo_domain iclass,,, Internal classes" > geo_domain.7texi cat domain_indirect.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/domain_indirect.h -node "domain_indirect iclass,,, Internal classes" > domain_indirect.7texi cat geo_domain_indirect.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/geo_domain_indirect.h -node "geo_domain_indirect iclass,,, Internal classes" > geo_domain_indirect.7texi cat basis.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/basis.h -node "basis iclass,,, Internal classes" > basis.7texi cat numbering.h | ../../config/col -b -x | ../../config/doc2texi -file nfem/plib/numbering.h -node "numbering iclass,,, Internal classes" > numbering.7texi Making all in pbasis linking exported headers.... cd /<>/include/rheolef /bin/rm -f /<>/include/rheolef/basis_symbolic.h ln -s /<>/nfem/pbasis/basis_symbolic.h basis_symbolic.h linking done. sh ./make_basis_list_cxx.sh P1 P2 P0 bubble P1q ! file basis_list.cc modified. sh ./make_numbering_list_cxx.sh bubble P1qd Pk Pkd ! file numbering_list.cc modified. make all-am /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT basis_list.lo -MD -MP -MF .deps/basis_list.Tpo -c -o basis_list.lo basis_list.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT basis_list.lo -MD -MP -MF .deps/basis_list.Tpo -c basis_list.cc -fPIC -DPIC -o .libs/basis_list.o mv -f .deps/basis_list.Tpo .deps/basis_list.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT numbering_list.lo -MD -MP -MF .deps/numbering_list.Tpo -c -o numbering_list.lo numbering_list.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT numbering_list.lo -MD -MP -MF .deps/numbering_list.Tpo -c numbering_list.cc -fPIC -DPIC -o .libs/numbering_list.o mv -f .deps/numbering_list.Tpo .deps/numbering_list.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Pk.lo -MD -MP -MF .deps/Pk.Tpo -c -o Pk.lo Pk.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Pk.lo -MD -MP -MF .deps/Pk.Tpo -c Pk.cc -fPIC -DPIC -o .libs/Pk.o mv -f .deps/Pk.Tpo .deps/Pk.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Pkd_set_ios_permutations.lo -MD -MP -MF .deps/Pkd_set_ios_permutations.Tpo -c -o Pkd_set_ios_permutations.lo Pkd_set_ios_permutations.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Pkd_set_ios_permutations.lo -MD -MP -MF .deps/Pkd_set_ios_permutations.Tpo -c Pkd_set_ios_permutations.cc -fPIC -DPIC -o .libs/Pkd_set_ios_permutations.o mv -f .deps/Pkd_set_ios_permutations.Tpo .deps/Pkd_set_ios_permutations.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT P1.lo -MD -MP -MF .deps/P1.Tpo -c -o P1.lo P1.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT P1.lo -MD -MP -MF .deps/P1.Tpo -c P1.cc -fPIC -DPIC -o .libs/P1.o In file included from ../../include/rheolef/basis.h:23:0, from P1.h:24, from P1.cc:22: ../../include/rheolef/reference_element.h: In member function ‘rheolef::basis_P1::size_type rheolef::basis_P1::size(rheolef::reference_element) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P1::hat_node(rheolef::reference_element, typename std::vector >::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P1::grad_eval(rheolef::reference_element, const rheolef::point_basic&, typename std::vector >::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P1::eval(rheolef::reference_element, const rheolef::point_basic&, typename std::vector::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P1::eval(rheolef::reference_element, const rheolef::point_basic&, std::vector&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P1::hat_node(rheolef::reference_element, std::vector >&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P1::grad_eval(rheolef::reference_element, const rheolef::point_basic&, std::vector >&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ mv -f .deps/P1.Tpo .deps/P1.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT P2.lo -MD -MP -MF .deps/P2.Tpo -c -o P2.lo P2.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT P2.lo -MD -MP -MF .deps/P2.Tpo -c P2.cc -fPIC -DPIC -o .libs/P2.o In file included from ../../include/rheolef/basis.h:23:0, from P2.h:24, from P2.cc:22: ../../include/rheolef/reference_element.h: In member function ‘rheolef::basis_P2::size_type rheolef::basis_P2::size(rheolef::reference_element) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P2::eval(rheolef::reference_element, const rheolef::point_basic&, typename std::vector::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P2::grad_eval(rheolef::reference_element, const rheolef::point_basic&, typename std::vector >::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P2::hat_node(rheolef::reference_element, typename std::vector >::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P2::eval(rheolef::reference_element, const rheolef::point_basic&, std::vector&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P2::hat_node(rheolef::reference_element, std::vector >&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P2::grad_eval(rheolef::reference_element, const rheolef::point_basic&, std::vector >&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ mv -f .deps/P2.Tpo .deps/P2.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT P0.lo -MD -MP -MF .deps/P0.Tpo -c -o P0.lo P0.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT P0.lo -MD -MP -MF .deps/P0.Tpo -c P0.cc -fPIC -DPIC -o .libs/P0.o In file included from ../../include/rheolef/basis.h:23:0, from P0.h:24, from P0.cc:22: ../../include/rheolef/reference_element.h: In member function ‘rheolef::basis_P0::size_type rheolef::basis_P0::size(rheolef::reference_element) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P0::eval(rheolef::reference_element, const rheolef::point_basic&, typename std::vector::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P0::grad_eval(rheolef::reference_element, const rheolef::point_basic&, typename std::vector >::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P0::hat_node(rheolef::reference_element, typename std::vector >::iterator) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P0::eval(rheolef::reference_element, const rheolef::point_basic&, std::vector&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P0::grad_eval(rheolef::reference_element, const rheolef::point_basic&, std::vector >&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ ../../include/rheolef/reference_element.h: In member function ‘void rheolef::basis_P0::hat_node(rheolef::reference_element, std::vector >&) const [with T = double]’: ../../include/rheolef/reference_element.h:102:40: warning: array subscript is above array bounds [-Warray-bounds] char name() const { return _name[_x]; } ~~~~~~~~^ mv -f .deps/P0.Tpo .deps/P0.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT bubble.lo -MD -MP -MF .deps/bubble.Tpo -c -o bubble.lo bubble.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi 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-Wno-deprecated-declarations -O3 -MT P1qd_numbering.lo -MD -MP -MF .deps/P1qd_numbering.Tpo -c P1qd_numbering.cc -fPIC -DPIC -o .libs/P1qd_numbering.o mv -f .deps/P1qd_numbering.Tpo .deps/P1qd_numbering.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Pk_numbering.lo -MD -MP -MF .deps/Pk_numbering.Tpo -c -o Pk_numbering.lo Pk_numbering.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Pk_numbering.lo -MD -MP -MF .deps/Pk_numbering.Tpo -c Pk_numbering.cc -fPIC -DPIC -o .libs/Pk_numbering.o mv -f .deps/Pk_numbering.Tpo .deps/Pk_numbering.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Pkd_numbering.lo -MD -MP -MF .deps/Pkd_numbering.Tpo -c -o Pkd_numbering.lo Pkd_numbering.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT Pkd_numbering.lo -MD -MP -MF .deps/Pkd_numbering.Tpo -c Pkd_numbering.cc -fPIC -DPIC -o .libs/Pkd_numbering.o mv -f .deps/Pkd_numbering.Tpo .deps/Pkd_numbering.Plo /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o libbasis.la basis_list.lo numbering_list.lo Pk.lo Pkd_set_ios_permutations.lo P1.lo P2.lo P0.lo bubble.lo P1q.lo bubble_numbering.lo P1qd_numbering.lo Pk_numbering.lo Pkd_numbering.lo libtool: link: ar cru .libs/libbasis.a .libs/basis_list.o .libs/numbering_list.o .libs/Pk.o .libs/Pkd_set_ios_permutations.o .libs/P1.o .libs/P2.o .libs/P0.o .libs/bubble.o .libs/P1q.o .libs/bubble_numbering.o .libs/P1qd_numbering.o .libs/Pk_numbering.o .libs/Pkd_numbering.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libbasis.a libtool: link: ( cd ".libs" && rm -f "libbasis.la" && ln -s "../libbasis.la" "libbasis.la" ) /bin/bash ../../libtool --tag=CC --mode=link gcc -O3 -version-info 1:0:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o librheolef.la -rpath /usr/lib libbasis.la ../plib/libfem.la ../geo_element/libgeo_element.la ../../skit/plib2/libskit.la ../../util/lib/libutil.la -lCGAL -lgmp -lumfpack -lamd -ldmumps_ptscotch -lamd -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi libtool: link: gcc -shared -fPIC -DPIC -Wl,--whole-archive ./.libs/libbasis.a ../plib/.libs/libfem.a ../geo_element/.libs/libgeo_element.a ../../skit/plib2/.libs/libskit.a ../../util/lib/.libs/libutil.a -Wl,--no-whole-archive -lboost_iostreams -lCGAL -lgmp -lumfpack -ldmumps_ptscotch -lamd -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fstack-protector-strong -Wl,-soname -Wl,librheolef.so.1 -o .libs/librheolef.so.1.0.0 libtool: link: (cd ".libs" && rm -f "librheolef.so.1" && ln -s "librheolef.so.1.0.0" "librheolef.so.1") libtool: link: (cd ".libs" && rm -f "librheolef.so" && ln -s "librheolef.so.1.0.0" "librheolef.so") libtool: link: ( cd ".libs" && rm -f "librheolef.la" && ln -s "../librheolef.la" "librheolef.la" ) Making all in sbin g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../include -I/usr/include/openmpi -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT mkgeo_ball_gmsh_fix-mkgeo_ball_gmsh_fix.o -MD -MP -MF .deps/mkgeo_ball_gmsh_fix-mkgeo_ball_gmsh_fix.Tpo -c -o mkgeo_ball_gmsh_fix-mkgeo_ball_gmsh_fix.o `test -f 'mkgeo_ball_gmsh_fix.cc' || echo './'`mkgeo_ball_gmsh_fix.cc mv -f .deps/mkgeo_ball_gmsh_fix-mkgeo_ball_gmsh_fix.Tpo .deps/mkgeo_ball_gmsh_fix-mkgeo_ball_gmsh_fix.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -I../../include -I/usr/include/openmpi -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o mkgeo_ball_gmsh_fix mkgeo_ball_gmsh_fix-mkgeo_ball_gmsh_fix.o ../../nfem/pbasis/librheolef.la -lCGAL -lgmp -lumfpack -lamd -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -I../../include -I/usr/include/openmpi -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/mkgeo_ball_gmsh_fix mkgeo_ball_gmsh_fix-mkgeo_ball_gmsh_fix.o ../../nfem/pbasis/.libs/librheolef.so -lCGAL -lgmp -lumfpack -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT mkgeo_grid_1d.o -MD -MP -MF .deps/mkgeo_grid_1d.Tpo -c -o mkgeo_grid_1d.o mkgeo_grid_1d.cc mv -f .deps/mkgeo_grid_1d.Tpo .deps/mkgeo_grid_1d.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o mkgeo_grid_1d mkgeo_grid_1d.o libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o mkgeo_grid_1d mkgeo_grid_1d.o g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT mkgeo_grid_2d.o -MD -MP -MF .deps/mkgeo_grid_2d.Tpo -c -o mkgeo_grid_2d.o mkgeo_grid_2d.cc mv -f .deps/mkgeo_grid_2d.Tpo .deps/mkgeo_grid_2d.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o mkgeo_grid_2d mkgeo_grid_2d.o libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o mkgeo_grid_2d mkgeo_grid_2d.o g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT mkgeo_grid_3d.o -MD -MP -MF .deps/mkgeo_grid_3d.Tpo -c -o mkgeo_grid_3d.o mkgeo_grid_3d.cc mv -f .deps/mkgeo_grid_3d.Tpo .deps/mkgeo_grid_3d.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o mkgeo_grid_3d mkgeo_grid_3d.o libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o mkgeo_grid_3d mkgeo_grid_3d.o grep -e '^#' < mkgeo_ball | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name mkgeo_ball -section 1rheolef > mkgeo_ball.1rheolef grep -e '^#' < mkgeo_grid | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name mkgeo_grid -section 1rheolef > mkgeo_grid.1rheolef grep -e '^#' < mkgeo_ugrid | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name mkgeo_ugrid -section 1rheolef > mkgeo_ugrid.1rheolef grep -e '^#' < bamg2geo | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name bamg2geo -section 1rheolef > bamg2geo.1rheolef grep -e '^#' < mkgeo_ball | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2texi -file nfem/sbin/mkgeo_ball -node "mkgeo_ball command,,, Commands" > mkgeo_ball.1texi grep -e '^#' < mkgeo_grid | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2texi -file nfem/sbin/mkgeo_grid -node "mkgeo_grid command,,, Commands" > mkgeo_grid.1texi grep -e '^#' < mkgeo_ugrid | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2texi -file nfem/sbin/mkgeo_ugrid -node "mkgeo_ugrid command,,, Commands" > mkgeo_ugrid.1texi grep -e '^#' < bamg2geo | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2texi -file nfem/sbin/bamg2geo -node "bamg2geo command,,, Commands" > bamg2geo.1texi Making all in pbin g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT geo.o -MD -MP -MF .deps/geo.Tpo -c -o geo.o geo.cc mv -f .deps/geo.Tpo .deps/geo.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o geo geo.o ../pbasis/librheolef.la ../pbasis/libbasis.la ../../skit/plib2/libskit.la ../../util/lib/libutil.la -lumfpack -lamd -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lCGAL -lgmp -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/geo geo.o ../pbasis/.libs/librheolef.so ../pbasis/.libs/libbasis.a ../../skit/plib2/.libs/libskit.a ../../util/lib/.libs/libutil.a -lboost_iostreams -lumfpack -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lCGAL -lgmp -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT field.o -MD -MP -MF .deps/field.Tpo -c -o field.o field.cc mv -f .deps/field.Tpo .deps/field.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o field field.o ../pbasis/librheolef.la ../pbasis/libbasis.la ../../skit/plib2/libskit.la ../../util/lib/libutil.la -lumfpack -lamd -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lCGAL -lgmp -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/field field.o ../pbasis/.libs/librheolef.so ../pbasis/.libs/libbasis.a ../../skit/plib2/.libs/libskit.a ../../util/lib/.libs/libutil.a -lboost_iostreams -lumfpack -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lCGAL -lgmp -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT branch.o -MD -MP -MF .deps/branch.Tpo -c -o branch.o branch.cc mv -f .deps/branch.Tpo .deps/branch.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o branch branch.o ../pbasis/librheolef.la ../pbasis/libbasis.la ../../skit/plib2/libskit.la ../../util/lib/libutil.la -lumfpack -lamd -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lCGAL -lgmp -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/branch branch.o ../pbasis/.libs/librheolef.so ../pbasis/.libs/libbasis.a ../../skit/plib2/.libs/libskit.a ../../util/lib/.libs/libutil.a -lboost_iostreams -lumfpack -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lCGAL -lgmp -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT msh2geo_int.o -MD -MP -MF .deps/msh2geo_int.Tpo -c -o msh2geo_int.o msh2geo_int.cc mv -f .deps/msh2geo_int.Tpo .deps/msh2geo_int.Po g++ -DHAVE_CONFIG_H -I. -I../../config -I../../util/qd -I../../include -I/usr/include/suitesparse -I/usr/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -MT msh2geo_node_renum.o -MD -MP -MF .deps/msh2geo_node_renum.Tpo -c -o msh2geo_node_renum.o msh2geo_node_renum.cc mv -f .deps/msh2geo_node_renum.Tpo .deps/msh2geo_node_renum.Po /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o msh2geo_int msh2geo_int.o msh2geo_node_renum.o ../pbasis/librheolef.la ../pbasis/libbasis.la ../../skit/plib2/libskit.la ../../util/lib/libutil.la -lumfpack -lamd -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lCGAL -lgmp -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -g -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-unused -Wno-strict-aliasing -Wno-literal-suffix -Wno-deprecated-declarations -O3 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -O3 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o .libs/msh2geo_int msh2geo_int.o msh2geo_node_renum.o ../pbasis/.libs/librheolef.so ../pbasis/.libs/libbasis.a ../../skit/plib2/.libs/libskit.a ../../util/lib/.libs/libutil.a -lboost_iostreams -lumfpack -ldmumps_ptscotch -lamd -lptscotchparmetis -lptscotch -lptscotcherrexit -lz -lCGAL -lgmp -lboost_mpi -lboost_serialization -L/usr/lib/openmpi/lib -lmpi_cxx -lmpi cat geo.cc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name geo -section 1rheolef > geo.1rheolef cat field.cc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name field -section 1rheolef > field.1rheolef cat branch.cc | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name branch -section 1rheolef > branch.1rheolef grep -e '^#' < msh2geo | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2man -package rheolef -version 6.7 -name msh2geo -section 1rheolef > msh2geo.1rheolef cat geo.cc | ../../config/col -b -x | ../../config/doc2texi -file nfem/pbin/geo.cc -node "geo command,,, Commands" > geo.1texi cat field.cc | ../../config/col -b -x | ../../config/doc2texi -file nfem/pbin/field.cc -node "field command,,, Commands" > field.1texi cat branch.cc | ../../config/col -b -x | ../../config/doc2texi -file nfem/pbin/branch.cc -node "branch command,,, Commands" > branch.1texi grep -e '^#' < msh2geo | sed -e 's/^#//' | ../../config/col -b -x | ../../config/doc2texi -file nfem/pbin/msh2geo -node "msh2geo command,,, Commands" > msh2geo.1texi Making all in vtk cd ../.. \ && CONFIG_FILES=nfem/vtk/gnocchi CONFIG_HEADERS= /bin/bash ./config.status config.status: creating nfem/vtk/gnocchi config.status: WARNING: 'nfem/vtk/gnocchi.in' seems to ignore the --datarootdir setting config.status: executing depfiles commands config.status: executing libtool commands chmod a+x gnocchi Making all in ptst make all-am make[4]: Nothing to be done for 'all-am'. make[3]: Nothing to be done for 'all-am'. Making all in doc Making all in refman subdirs=config util/fdstream util/lib util/ublas util/bamg skit/plib2 nfem/sbin nfem/quadrature nfem/geo_element nfem/pbasis nfem/plib nfem/pbin doc/usrman /bin/bash ./merge_texi.sh ../.. ../.. config util/fdstream util/lib util/ublas util/bamg skit/plib2 nfem/sbin nfem/quadrature nfem/geo_element nfem/pbasis nfem/plib nfem/pbin doc/usrman ! scan and reorder manuals, as extrated from source code: ................................................................................. ! file 'menu.texi' created. ! file 'includes.texi' created. ! file 'includes.p' created. ! file 'create-texi.p' created. make make-included make[4]: Nothing to be done for 'make-included'. grep '^dnl[ ][ ]*#' ../../configure.ac | \ sed -e 's/^dnl[ ][ ]*//' -e 's/^#//' | \ sed -e "s/\@PACKAGE\@/rheolef/g" -e "s/\@VERSION\@/6.7/g" | \ ../../config/col -b -x | ../../config/doc2texi -chapter -file configure.ac > INSTALL.texi makeinfo --html --force --no-split -I . -I . ./rheolef-refman.texi -o ./rheolef-refman.html.new && mv ./rheolef-refman.html.new ./rheolef-refman.html ./rheolef-refman.texi:78: @menu seen before first @node ./rheolef-refman.texi:78: perhaps your @top node should be wrapped in @ifnottex rather than @ifinfo? ./rheolef-refman.texi:120: Up reference to nonexistent `Top' ./rheolef-refman.texi:125: Up reference to nonexistent `Top' ./rheolef-refman.texi:129: Up reference to nonexistent `Top' ./includes.texi:4: Up reference to nonexistent `Top' ./includes.texi:29: Up reference to nonexistent `Top' ./includes.texi:92: Up reference to nonexistent `Top' ./includes.texi:131: Up reference to nonexistent `Top' ./includes.texi:180: Up reference to nonexistent `Top' ./includes.texi:189: Up reference to nonexistent `Top' ./rheolef-refman.texi:147: Up reference to nonexistent `Top' ./rheolef-refman.texi:151: Up reference to nonexistent `Top' ./rheolef-refman.texi:165: Up reference to nonexistent `Top' ./rheolef-refman.texi:169: Up reference to nonexistent `Top' ./rheolef-refman.texi:173: Up reference to nonexistent `Top' ./rheolef-refman.texi:177: Up reference to nonexistent `Top' ./rheolef-refman.texi:181: Up reference to nonexistent `Top' ./rheolef-refman.texi:185: Up reference to nonexistent `Top' ./rheolef-refman.texi:189: Up reference to nonexistent `Top' makeinfo --force --no-split -I . -I . ./rheolef-refman.texi -o ./rheolef-refman.info.new && mv ./rheolef-refman.info.new ./rheolef-refman.info TEXINPUTS=./:./:../../demo/:../../config/: makeinfo --force -I . -I . --no-warn --no-header ./rheolef-refman.texi > rheolef-refman.txt grep -v @[a-z][a-z]index INSTALL.texi > INSTALL-tmp40013.texi makeinfo -I . --no-warn --no-header INSTALL-tmp40013.texi > INSTALL.txt /bin/rm -f INSTALL-tmp40013.texi cp INSTALL.txt ../../INSTALL Making all in pexamples make all-am make[4]: Nothing to be done for 'all-am'. Making all in pusrman make[3]: Nothing to be done for 'all'. Making all in doxygen make[3]: Nothing to be done for 'all'. make[3]: Nothing to be done for 'all-am'. make[2]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/<>' touch build-stamp fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_clean dh_installdirs # Add here commands to install the package into DESTDIR make install DESTDIR=/<>/debian/tmp-rheolef make[1]: Entering directory '/<>' Making install in config make install-am /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/bin' /bin/bash ../libtool --mode=install /bin/sh ../config/install-sh -c doc2man doc2texi doc2oxy '/<>/debian/tmp-rheolef/usr/bin' libtool: install: /bin/sh ../config/install-sh -c doc2man /<>/debian/tmp-rheolef/usr/bin/doc2man libtool: install: /bin/sh ../config/install-sh -c doc2texi /<>/debian/tmp-rheolef/usr/bin/doc2texi libtool: install: /bin/sh ../config/install-sh -c doc2oxy /<>/debian/tmp-rheolef/usr/bin/doc2oxy /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/bin' /bin/sh ../config/install-sh -c rheolef-config '/<>/debian/tmp-rheolef/usr/bin' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/lib/rheolef' /bin/sh ../config/install-sh -c -m 644 config.h rheolef.mk '/<>/debian/tmp-rheolef/usr/lib/rheolef' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man1' /bin/sh ../config/install-sh -c -m 644 rheolef-config.1rheolef '/<>/debian/tmp-rheolef/usr/share/man/man1' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man9' /bin/sh ../config/install-sh -c -m 644 acinclude.9rheolef '/<>/debian/tmp-rheolef/usr/share/man/man9' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/rheolef' /bin/sh ../config/install-sh -c -m 644 check-shlibpath_var.sh '/<>/debian/tmp-rheolef/usr/share/rheolef' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../config/install-sh -c -m 644 compiler.h extended_arithmetic_support.h dmalloc_return.h numeric_limits.h numeric_flags.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in util Making install in bamg /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/bin' /bin/bash ../../libtool --mode=install /bin/sh ../../config/install-sh -c bamg '/<>/debian/tmp-rheolef/usr/bin' libtool: install: /bin/sh ../../config/install-sh -c bamg /<>/debian/tmp-rheolef/usr/bin/bamg mkdir -p /<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc /bin/sh ../../config/install-sh -c -m 644 ./bamg.pdf /<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc/bamg.pdf /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man1' /bin/sh ../../config/install-sh -c -m 644 bamg.1rheolef '/<>/debian/tmp-rheolef/usr/share/man/man1' Making install in fdstream make install-am make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 pstream.h fdstream.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in ublas make install-am make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 ublas-io.h ublas-invert.h ublas_invert_3x3.h ublas_matrix_range.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in lib make install-am make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man2' /bin/sh ../../config/install-sh -c -m 644 rheostream.2rheolef '/<>/debian/tmp-rheolef/usr/share/man/man2' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man4' /bin/sh ../../config/install-sh -c -m 644 catchmark.4rheolef '/<>/debian/tmp-rheolef/usr/share/man/man4' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man7' /bin/sh ../../config/install-sh -c -m 644 smart_pointer.7rheolef heap_allocator.7rheolef stack_allocator.7rheolef Vector.7rheolef '/<>/debian/tmp-rheolef/usr/share/man/man7' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man8' /bin/sh ../../config/install-sh -c -m 644 iorheo.8rheolef pretty_name.8rheolef '/<>/debian/tmp-rheolef/usr/share/man/man8' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 smart_pointer.h pretty_name.h promote.h heap_object.h heap_allocator.h stack_allocator.h Vector.h iorheo.h iorheo-members.h catchmark.h iorheobase.h rheostream.h misc_algo.h pair_util.h the_clock.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in tst make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in skit Making install in plib2 make install-am make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man2' /bin/sh ../../config/install-sh -c -m 644 csr.2rheolef vec.2rheolef asr.2rheolef eye.2rheolef dia.2rheolef disarray.2rheolef solver.2rheolef solver_option_type.2rheolef solver_abtb.2rheolef diststream.2rheolef distributor.2rheolef environment.2rheolef '/<>/debian/tmp-rheolef/usr/share/man/man2' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man4' /bin/sh ../../config/install-sh -c -m 644 dis_time.4rheolef puzawa.4rheolef pcg.4rheolef pgmres.4rheolef pminres.4rheolef mixed_solver.4rheolef diag.4rheolef '/<>/debian/tmp-rheolef/usr/share/man/man4' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man7' /bin/sh ../../config/install-sh -c -m 644 index_set.7rheolef pair_set.7rheolef '/<>/debian/tmp-rheolef/usr/share/man/man7' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 csr.h vec.h asr.h eye.h dia.h disarray.h solver.h solver_option_type.h solver_abtb.h diststream.h distributor.h environment.h dis_time.h puzawa.h pcg.h pgmres.h pminres.h mixed_solver.h diag.h mpi_assembly_begin.h mpi_assembly_end.h mpi_scatter_init.h mpi_scatter_begin.h mpi_scatter_end.h msg_from_context_pattern.h msg_from_context_indices.h msg_to_context.h msg_local_context.h msg_local_optimize.h msg_left_permutation_apply.h msg_right_permutation_apply.h msg_both_permutation_apply.h index_set.h pair_set.h mpi_pair_datatype.h msg_sort_with_permutation.h csr_amux.h csr_cumul_trans_mult.h asr_to_csr.h csr_to_asr.h '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 asr_to_csr_dist_logical.h disarray_seq.icc disarray_mpi.icc scatter_message.icc container_traits.h skit.h vec_expr_v2.h expr_utilities.h csr_vec_expr.h vec_concat.h csr_concat.h vec_range.h scalar_traits.h vector_of_iterator.h disarray_store.h scatter_message.h dis_macros.h dis_accumulate.h dis_inner_product.h functional_sgi_ext.h get_pointer_from_iterator.h load_chunk.h msg_util.h distributed.h ldlt_seq_builtin.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in pbin /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/bin' /bin/bash ../../libtool --mode=install /bin/sh ../../config/install-sh -c csr '/<>/debian/tmp-rheolef/usr/bin' libtool: install: /bin/sh ../../config/install-sh -c csr /<>/debian/tmp-rheolef/usr/bin/csr /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man1' /bin/sh ../../config/install-sh -c -m 644 csr.1rheolef '/<>/debian/tmp-rheolef/usr/share/man/man1' Making install in ptst2 make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in nfem Making install in data make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in quadrature make install-am make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 sqr.icc jacobi.icc jacobi_roots.icc gamma.icc gauss_jacobi.icc gauss_radau_jacobi.icc gauss_lobatto_jacobi.icc gauss_chebyschev.icc gauss_radau_chebyschev.icc gauss_lobatto_chebyschev.icc gauss_legendre_check.icc gauss_chebyschev_check.icc gauss_jacobi_check.icc sqr.h jacobi.h jacobi_roots.h gamma.h gauss_jacobi.h gauss_radau_jacobi.h gauss_lobatto_jacobi.h gauss_chebyschev.h gauss_radau_chebyschev.h gauss_lobatto_chebyschev.h gauss_legendre_check.h gauss_chebyschev_check.h gauss_jacobi_check.h tqli.h pythag.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in geo_element ./cxx_reference_element > ./reference_element_declare.cc.new ! file "reference_element_declare.cc" unchanged. make install-am ./cxx_reference_element > ./reference_element_declare.cc.new ! file "reference_element_declare.cc" unchanged. make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man2' /bin/sh ../../config/install-sh -c -m 644 point.2rheolef tensor.2rheolef tensor3.2rheolef tensor4.2rheolef quadrature_option_type.2rheolef '/<>/debian/tmp-rheolef/usr/share/man/man2' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man7' /bin/sh ../../config/install-sh -c -m 644 quadrature.7rheolef reference_element.7rheolef geo_element.7rheolef hack_array.7rheolef point.7rheolef edge.7rheolef triangle.7rheolef quadrangle.7rheolef tetrahedron.7rheolef prism.7rheolef hexahedron.7rheolef '/<>/debian/tmp-rheolef/usr/share/man/man7' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 point.h tensor.h tensor3.h tensor4.h tensor-eig3.h tensor-svd-algo.h undeterminated.h reference_element.h reference_element_face_transformation.h geo_element.h geo_element_v1.h geo_element_v4.h hack_array.h hack_array_seq.icc hack_array_mpi.icc geo_element_indirect.h quadrature.h quadrature_option_type.h tiny_matvec.h tiny_lu.h cgal_kernel.h cgal_kernel_float128.h cgal_traits.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in plib make install-am make[5]: Nothing to be done for 'install-exec-am'. cd /<>/debian/tmp-rheolef/usr/include; rm -f rheolef.h; ln -s rheolef/rheolef.h rheolef.h cd /<>/debian/tmp-rheolef/usr/include; rm -f rheolef_seq.h; ln -s rheolef/rheolef_seq.h rheolef_seq.h /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man2' /bin/sh ../../config/install-sh -c -m 644 geo.2rheolef space.2rheolef field.2rheolef form.2rheolef branch.2rheolef characteristic.2rheolef band.2rheolef test.2rheolef functor.2rheolef field_functor.2rheolef form_option_type.2rheolef '/<>/debian/tmp-rheolef/usr/share/man/man2' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man4' /bin/sh ../../config/install-sh -c -m 644 interpolate.4rheolef riesz.4rheolef integrate.4rheolef newton.4rheolef damped_newton.4rheolef adapt.4rheolef level_set.4rheolef compose.4rheolef limiter.4rheolef '/<>/debian/tmp-rheolef/usr/share/man/man4' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man7' /bin/sh ../../config/install-sh -c -m 644 geo_domain.7rheolef domain_indirect.7rheolef geo_domain_indirect.7rheolef basis.7rheolef numbering.7rheolef '/<>/debian/tmp-rheolef/usr/share/man/man7' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 rheolef.h rheolef_seq.h geo.h space.h field.h form.h branch.h characteristic.h band.h test.h functor.h field_functor.h form_option_type.h interpolate.h riesz.h integrate.h newton.h damped_newton.h adapt.h level_set.h compose.h limiter.h geo_domain.h domain_indirect.h geo_domain_indirect.h basis.h numbering.h point_util.h element_constant.h geo_header.h geo_size.h geo_locate.h geo_trace_ray_boundary.h geo_nearest.h geo_element_curved_ball.h basis_on_pointset.h piola.h inv_piola.h vf_tag.h space_constant.h '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 space_constitution.h space_mult.h space_component.h field_component.h field_indirect.h field_evaluate.h field_expr_v2_utilities.h field_expr_v2_linear.h field_expr_v2_nonlinear.h field_expr_v2_nonlinear_terminal.h field_expr_v2_variational.h field_expr_v2_variational_terminal.h field_expr_v2_variational_tag.h field_expr_v2_value_assembly.h form_expr_v2_variational.h form_field_expr.h field_concat.h field_vf_assembly.h field_valarray.h operators.h rounder.h form_weighted.h form_concat.h form_vf_assembly.h integrate_numeric.icc iofem.h newton-backtrack.h damped-newton-generic.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in pbasis make install-am /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/lib' /bin/bash ../../libtool --mode=install /bin/sh ../../config/install-sh -c librheolef.la '/<>/debian/tmp-rheolef/usr/lib' libtool: install: /bin/sh ../../config/install-sh -c .libs/librheolef.so.1.0.0 /<>/debian/tmp-rheolef/usr/lib/librheolef.so.1.0.0 libtool: install: (cd /<>/debian/tmp-rheolef/usr/lib && { ln -s -f librheolef.so.1.0.0 librheolef.so.1 || { rm -f librheolef.so.1 && ln -s librheolef.so.1.0.0 librheolef.so.1; }; }) libtool: install: (cd /<>/debian/tmp-rheolef/usr/lib && { ln -s -f librheolef.so.1.0.0 librheolef.so || { rm -f librheolef.so && ln -s librheolef.so.1.0.0 librheolef.so; }; }) libtool: install: /bin/sh ../../config/install-sh -c .libs/librheolef.lai /<>/debian/tmp-rheolef/usr/lib/librheolef.la libtool: warning: remember to run 'libtool --finish /usr/lib' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/include/rheolef' /bin/sh ../../config/install-sh -c -m 644 basis_symbolic.h '/<>/debian/tmp-rheolef/usr/include/rheolef' Making install in sbin /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/bin' /bin/sh ../../config/install-sh -c mkgeo_ball mkgeo_grid mkgeo_ugrid bamg2geo '/<>/debian/tmp-rheolef/usr/bin' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man1' /bin/sh ../../config/install-sh -c -m 644 mkgeo_ball.1rheolef mkgeo_grid.1rheolef mkgeo_ugrid.1rheolef bamg2geo.1rheolef '/<>/debian/tmp-rheolef/usr/share/man/man1' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/lib/rheolef' /bin/bash ../../libtool --mode=install /bin/sh ../../config/install-sh -c mkgeo_ball_gmsh_fix mkgeo_grid_1d mkgeo_grid_2d mkgeo_grid_3d '/<>/debian/tmp-rheolef/usr/lib/rheolef' libtool: warning: '../../nfem/pbasis/librheolef.la' has not been installed in '/usr/lib' libtool: install: /bin/sh ../../config/install-sh -c .libs/mkgeo_ball_gmsh_fix /<>/debian/tmp-rheolef/usr/lib/rheolef/mkgeo_ball_gmsh_fix libtool: install: /bin/sh ../../config/install-sh -c mkgeo_grid_1d /<>/debian/tmp-rheolef/usr/lib/rheolef/mkgeo_grid_1d libtool: install: /bin/sh ../../config/install-sh -c mkgeo_grid_2d /<>/debian/tmp-rheolef/usr/lib/rheolef/mkgeo_grid_2d libtool: install: /bin/sh ../../config/install-sh -c mkgeo_grid_3d /<>/debian/tmp-rheolef/usr/lib/rheolef/mkgeo_grid_3d Making install in pbin /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/bin' /bin/bash ../../libtool --mode=install /bin/sh ../../config/install-sh -c geo field branch '/<>/debian/tmp-rheolef/usr/bin' libtool: warning: '../pbasis/librheolef.la' has not been installed in '/usr/lib' libtool: install: /bin/sh ../../config/install-sh -c .libs/geo /<>/debian/tmp-rheolef/usr/bin/geo libtool: warning: '../pbasis/librheolef.la' has not been installed in '/usr/lib' libtool: install: /bin/sh ../../config/install-sh -c .libs/field /<>/debian/tmp-rheolef/usr/bin/field libtool: warning: '../pbasis/librheolef.la' has not been installed in '/usr/lib' libtool: install: /bin/sh ../../config/install-sh -c .libs/branch /<>/debian/tmp-rheolef/usr/bin/branch /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/bin' /bin/sh ../../config/install-sh -c msh2geo '/<>/debian/tmp-rheolef/usr/bin' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/man/man1' /bin/sh ../../config/install-sh -c -m 644 geo.1rheolef field.1rheolef branch.1rheolef msh2geo.1rheolef '/<>/debian/tmp-rheolef/usr/share/man/man1' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/lib/rheolef' /bin/bash ../../libtool --mode=install /bin/sh ../../config/install-sh -c msh2geo_int '/<>/debian/tmp-rheolef/usr/lib/rheolef' libtool: warning: '../pbasis/librheolef.la' has not been installed in '/usr/lib' libtool: install: /bin/sh ../../config/install-sh -c .libs/msh2geo_int /<>/debian/tmp-rheolef/usr/lib/rheolef/msh2geo_int Making install in vtk make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/rheolef' /bin/sh ../../config/install-sh -c -m 644 mayavi2_rheolef.py paraview_rheolef.py '/<>/debian/tmp-rheolef/usr/share/rheolef' Making install in ptst make install-am make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. Making install in doc Making install in refman make[4]: Nothing to be done for 'install-exec-am'. TEXINPUTS=./:./:../../demo/:../../config/: MAKEINFO='makeinfo --force -I . -I .' texi2dvi ./rheolef-refman.texi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=etex) restricted \write18 enabled. entering extended mode (././rheolef-refman.texi (/<>/doc/refman/texinfo.tex Loading texinfo [version 1999-03-26.17]: Basics, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, localization, and turning on texinfo input format.) (/<>/doc/refman/myversion.texi) [1] [2] Chapter 1 (/<>/doc/refman/introduction.texi) (/<>/doc/refman/INSTALL.texi Chapter 2 [1] [2] Overfull \hbox (55.18257pt too wide) in paragraph at lines 54--54 [] @texttt firefox http://ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef -refman.html[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 70--70 [] @texttt firefox http://ljk.imag.fr/membres/Pierre.Saramito/rheolef/source_ html/[] [3] [4] [5] Overfull \hbox (55.18257pt too wide) in paragraph at lines 311--311 [] @texttt CXX=icpc CXXFLAGS=-I/usr/local/include LIBS="-L/usr/local/lib -lz" ./configure[] Overfull \hbox (1.0965pt too wide) in paragraph at lines 362--364 []@textrm Set the home di-rec-tory for the @texttt cln[] @textrm li-brary. De- fault @textsl dir[]cln @textrm is `@texttt /usr/local/math[]@textrm '[]. [6] Overfull \hbox (31.82034pt too wide) in paragraph at lines 420--426 @textsl dir[]parmetis @textrm for @texttt libparmetis.so[]@textrm , @texttt li bparmetis.a[] @textrm and also @texttt libmetis.a[] libmetis.so[]@textrm . Overfull \hbox (44.75717pt too wide) in paragraph at lines 438--444 []@textrm Turns on/off the @texttt scalapack[] @textrm li-braries. Check in @t extsl rheo[]libs[]scalapack @textrm for @texttt libscalapack.so[]@textrm , Overfull \hbox (16.5128pt too wide) in paragraph at lines 448--453 []@textrm Turns on/off the @texttt mumps[] @textrm dis-tributed solver. Check in @textsl lib-dir[]mumps @textrm for @texttt libmumps.so[]@textrm , Overfull \hbox (22.83936pt too wide) in paragraph at lines 464--468 []@textrm Turns on/off the @texttt pastix[] @textrm dis-tributed solver. Check in @textsl lib-dir[]pastix @textrm for @texttt libpastix.so[]@textrm , [7] Overfull \hbox (10.56544pt too wide) in paragraph at lines 475--480 @textrm and for header @textsl in-cdir[]cholmod@textrm /cholmod.h or @textsl i n-cdir[]cholmod@textrm /cholmod/cholmod.h. Overfull \hbox (83.97032pt too wide) in paragraph at lines 487--492 @texttt libumfpack.a[] @textrm and for header @textsl in-cdir[]umfpack@textrm /umfpack.h or @textsl in-cdir[]umfpack@textrm /umfpack/umfpack.h. [8]) Chapter 3 [9] [10] (/<>/doc/refman/includes.texi Chapter 4 [11] [12] (../../nfem/pbin/branch.1texi Cross reference values unknown; you must run TeX again. [13] [14]) (../../nfem/pbin/field.1texi [15] [16] [17] [18] Overfull \hbox (66.67995pt too wide) in paragraph at lines 288--288 [] @texttt field cube.field -cut -normal 0 1 0 -origin 0.5 0.5 0.5 -text > cube-cut.field[] [19]) (../../nfem/pbin/geo.1texi [20] [21] [22]) (../../nfem/pbin/msh2geo.1texi [23] Overfull \hbox (26.43913pt too wide) in paragraph at lines 57--57 [] @texttt i.e., the numbering follows that of the nodes of an embedded face/ volume.[] [24]) (../../nfem/sbin/bamg2geo.1texi [25] [26]) (../../nfem/sbin/mkgeo_ball.1texi Overfull \hbox (16.24315pt too wide) in paragraph at lines 63--67 @textrm The ge-om-e-try can be el-lipse/ellipsoid in-scribted in the [a,b]x[c,d ] rect-an-gle or the [a,b]x[c,d]x[f,g] [27]) (../../nfem/sbin/mkgeo_grid.1texi [28] Overfull \hbox (1.14882pt too wide) in paragraph at lines 79--82 @texttt -nosides[]@textrm The bound-ary sides are rep-resentd by do-mains: @te xttt left[]@textrm , @texttt right[]@textrm , @texttt top[]@textrm , @texttt bo ttom[]@textrm ,@texttt front[] [29]) (../../nfem/sbin/mkgeo_ugrid.1texi [30] [31] Overfull \hbox (1.14882pt too wide) in paragraph at lines 98--101 @texttt -nosides[]@textrm The bound-ary sides are rep-resentd by do-mains: @te xttt left[]@textrm , @texttt right[]@textrm , @texttt top[]@textrm , @texttt bo ttom[]@textrm ,@texttt front[] [32]) (../../util/bamg/bamg.1texi [33] [34] Overfull \hbox (32.18782pt too wide) in paragraph at lines 149--149 [] @texttt bamg -b toto_old.bamg -rbb toto_old.bb -r toto_new.bamg -obb tot o_new.bb[] [35] [36] [37] [38] [39] [40] Overfull \hbox (68.45793pt too wide) in paragraph at lines 429--431 []@textrm Frederic Hecht @texttt <@textrm Fred-eric.Hecht@texttt @@textrm inria .fr@texttt > @textrm is the au-thor of bamg. Pierre Saramito @texttt <@textrm P ierre.Saramito@texttt @@textrm imag.fr@texttt > ) (../../config/rheolef-config.1texi Overfull \hbox (19.55571pt too wide) in paragraph at lines 433--2 []@textrm The orig-i-nal site of the bamg mesh gen-er-a-tor is @texttt http://w ww.ann.jussieu.fr/hecht/ftp/bamg[]@textrm . [41]) Chapter 5 [42] (../../nfem/plib/band.2texi Overfull \hbox (89.6747pt too wide) in paragraph at lines 57--57 [] @texttt size_type sid_ie2bnd_ie (size_type sid_ie) const { return _sid_ie2 bnd_ie [sid_ie]; }[] [43]) (../../nfem/plib/branch.2texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 37--37 []@texttt class branch_basic : public std::vector > > {[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt typedef std::vector > > base;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 42--42 [] @texttt typedef typename base::size_type size_type;[] [44] Overfull \hbox (20.69044pt too wide) in paragraph at lines 53--53 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 54--54 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 55--55 [] @texttt const std::string & u1);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 56--56 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 57--57 [] @texttt const std::string & u1,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 58--58 [] @texttt const std::string & u2);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 79--79 [] @texttt __obranch operator() (const T& t, const field_basic& u 0, Args... uk);[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 81--81 [] @texttt __iobranch operator() (T& t, field_basic& u 0, Args&... uk);[] [45]) (../../nfem/plib/characteristic.2texi [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 61--61 []@texttt class characteristic_basic : public smart_pointer > {[] ) (../../nfem/plib/field.2texi [47] [48] Overfull \hbox (67.46213pt too wide) in paragraph at lines 108--111 []@textrm The space as-so-ci-ated to the trace writes @texttt wh.get_space()[] @textrm and is equiv-a-lent to @texttt space(omega["boundary"], [49] Overfull \hbox (59.90681pt too wide) in paragraph at lines 154--161 @texttt d=omega.dimension()[]@textrm . A tensor-valued field has @texttt d*(d+1 )/2[] @textrm com-po-nents, where @texttt d=omega.dimension()[]@textrm . Overfull \hbox (147.16158pt too wide) in paragraph at lines 201--201 []@texttt class field_basic : public std::unary_function::type>,T> {[] [50] Overfull \hbox (43.6852pt too wide) in paragraph at lines 247--247 [] @texttt details::is_field_expr_v2_linear_arg::value[] [51] Overfull \hbox (43.6852pt too wide) in paragraph at lines 254--254 [] @texttt details::is_field_expr_v2_linear_arg::value[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 262--262 [] @texttt field_basic (const std::initializer_list >& init_list);[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 263--263 [] @texttt field_basic& operator= (const std::initializer_list >& init_list);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 279--279 [] @texttt vec& set_u() { dis_dof_indexes_requires_update( ); return _u; }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 280--280 [] @texttt vec& set_b() { dis_dof_indexes_requires_update( ); return _b; }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 292--292 [] @texttt field_indirect_const operator[] (const geo_basic& dom ) const;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 301--301 [] @texttt field_component operator() (size_type i_comp, size_ty pe j_comp);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 302--302 [] @texttt field_component_const operator() (size_type i_comp, size_ty pe j_comp) const;[] [52] Overfull \hbox (32.18782pt too wide) in paragraph at lines 306--306 [] @texttt const distributor& ownership() const { return get_space().owners hip(); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 329--329 [] @texttt T dis_evaluate (const point_basic& x, size_type i_comp = 0) c onst;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 330--330 [] @texttt T operator() (const point_basic& x) const { return dis_eval uate (x,0); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 338--338 [] @texttt T evaluate (const geo_element& K, const point_basic& hat_xq, size_type i_comp = 0) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 340--340 [] @texttt // propagate changed values shared at partition boundaries to ot hers procs[] [53]) (../../nfem/plib/field_functor.2texi [54] Overfull \hbox (55.18257pt too wide) in paragraph at lines 52--52 [] @texttt const Function& get_ref() const { return static_cast(*this); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 54--54 [] @texttt Result operator() (const point& x) const { return get_ref().operato r()(x); }[] ) (../../nfem/plib/form.2texi [55] [56] Overfull \hbox (60.93126pt too wide) in paragraph at lines 100--100 [] @texttt form_basic (const std::initializer_list > & init_list);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 101--101 [] @texttt form_basic (const std::initializer_list > & init_list);[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 120--120 [] @texttt float_type operator () (const field_basic& uh, const field_ basic& vh) const;[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 124--124 [] @texttt odiststream& put (odiststream& ops, bool show_partition = true) const;[] [57] [58] Overfull \hbox (152.91026pt too wide) in paragraph at lines 218--218 [] @texttt const geo_basic& w_omega, // the domain wh ere the fct weight is defined[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 221--221 []@texttt template form_basic trans (const form_basic& a);[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 222--222 []@texttt template field_basic diag (const form_basic& a);[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 223--223 []@texttt template form_basic diag (const field_basic< T,M>& dh);[] ) (../../nfem/plib/form_option_type.2texi [59]) (../../nfem/plib/functor.2texi [60]) (../../nfem/plib/geo.2texi [61] Overfull \hbox (129.91551pt too wide) in paragraph at lines 10--10 []@texttt class geo_basic : public smart_pointer_clone > {[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 27--27 [] @texttt typedef typename rep::const_iterator_by_variant const_iterator_b y_variant;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 33--33 [] @texttt geo_basic (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 34--34 [] @texttt void load (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 35--35 [] @texttt geo_basic (const domain_indirect_basic& dom, const g eo_basic& omega);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 41--41 [] @texttt const std::array >,sequential>,[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 47--47 [] @texttt std::string name() const { return base::data( ).name(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 48--48 [] @texttt std::string familyname() const { return base::data( ).familyname(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 49--49 [] @texttt size_type dimension() const { return base::data( ).dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 50--50 [] @texttt size_type map_dimension() const { return base::data( ).map_dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 51--51 [] @texttt size_type serial_number() const { return base::data( ).serial_number(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 52--52 [] @texttt size_type variant() const { return base::data( ).variant(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 53--53 [] @texttt coordinate_type coordinate_system() const { return base::data( ).coordinate_system(); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 54--54 [] @texttt std::string coordinate_system_name() const { return space_const ant::coordinate_system_name(coordinate_system()); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 55--55 [] @texttt const basis_basic& get_piola_basis() const { return base::dat a().get_piola_basis(); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 56--56 [] @texttt size_type order() const { return base::data( ).get_piola_basis().degree(); }[] [62] Overfull \hbox (49.43388pt too wide) in paragraph at lines 57--57 [] @texttt const node_type& xmin() const { return base::data( ).xmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 58--58 [] @texttt const node_type& xmax() const { return base::data( ).xmax(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 59--59 [] @texttt const T& hmin() const { return base::data( ).hmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 60--60 [] @texttt const T& hmax() const { return base::data( ).hmax(); }[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 61--61 [] @texttt const distributor& geo_element_ownership(size_type dim) const { return base::data().geo_element_ownership(dim); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 62--62 [] @texttt const geo_size& sizes() const { return base::da ta().sizes(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 63--63 [] @texttt const geo_size& ios_sizes() const { return base::da ta().ios_sizes(); }[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 64--64 [] @texttt const_reference get_geo_element (size_type dim, size_type ige) c onst { return base::data().get_geo_element (dim, ige); }[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 65--65 [] @texttt reference get_geo_element (size_type dim, size_type ige) { return base::data().get_geo_element (dim, ige); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 66--66 [] @texttt const_reference dis_get_geo_element (size_type dim, size_type di s_ige) const[] Overfull \hbox (331.11958pt too wide) in paragraph at lines 68--68 [] @texttt const geo_element& bgd2dom_geo_element (const geo_element& bgd_K ) const { return base::data().bgd2dom_geo_element (bgd_K); }[] Overfull \hbox (331.11958pt too wide) in paragraph at lines 69--69 [] @texttt const geo_element& dom2bgd_geo_element (const geo_element& dom_K ) const { return base::data().dom2bgd_geo_element (dom_K); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 71--71 [] @texttt return base::data().neighbour (ie, loc_isi d); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 74--74 [] @texttt const node_type& node(size_type inod) const { return bas e::data().node(inod); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 75--75 [] @texttt const node_type& dis_node(size_type dis_inod) const { return bas e::data().dis_node(dis_inod); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 76--76 [] @texttt void dis_inod (const geo_element& K, std::vector& dis _inod) const {[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 78--78 [] @texttt node_type piola (const geo_element& K, const node_type& hat_x) c onst { return base::data().piola (K, hat_x); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 79--79 [] @texttt const disarray& get_nodes() const { return base::data().get_nodes(); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 80--80 [] @texttt size_type dis_inod2dis_iv (size_type dis_inod) const { return ba se::data().dis_inod2dis_iv(dis_inod); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 82--82 [] @texttt size_type n_domain_indirect () const { return base::data().n_dom ain_indirect (); }[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 83--83 [] @texttt bool have_domain_indirect (const std::string& name) const { retu rn base::data().have_domain_indirect (name); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 84--84 [] @texttt const domain_indirect_basic& get_domain_indirect (si ze_type i) const {[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 86--86 [] @texttt const domain_indirect_basic& get_domain_indirect (co nst std::string& name) const {[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 88--88 [] @texttt void insert_domain_indirect (const domain_indirect_basic& dom) const {[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 91--91 [] @texttt size_type n_domain () const { return base::data().n_domain_indir ect (); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 100--100 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 104--104 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] [63] Overfull \hbox (95.42339pt too wide) in paragraph at lines 114--114 [] @texttt { return base::data().seq_tr ace_move (x,v,y); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 119--119 [] @texttt { return base::data().dis_tr ace_move (x,v,y); }[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 125--125 [] @texttt { return base::data().trace_ ray_boundary (x,v,dis_ie,y); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 131--131 [] @texttt { return base::data().trace_ move (x,v,dis_ie,y); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 135--135 [] @texttt { return base::data().seq_ne arest (x, x_nearest); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 139--139 [] @texttt { return base::data().dis_ne arest (x, x_nearest); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 142--142 [] @texttt disarray,sequential>& x_nea rest,[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 143--143 [] @texttt disarray& dis_i e) const[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 144--144 [] @texttt { base::data().nearest (x, x _nearest, dis_ie); }[] Overfull \hbox (388.60646pt too wide) in paragraph at lines 153--153 [] @texttt void set_coordinate_system (std::string sys_coord_name) { set_co ordinate_system (space_constant::coordinate_system(sys_coord_name)); }[] [64] Overfull \hbox (66.67995pt too wide) in paragraph at lines 155--155 [] @texttt void build_by_subdividing (const geo_basic& omega, size_type k);[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 157--157 [] @texttt const geo_header& hdr,[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 158--158 [] @texttt const disarray& node,[] Overfull \hbox (469.08809pt too wide) in paragraph at lines 159--159 [] @texttt std::array >,sequential, heap_allocator >, reference_element::max_vari ant>&[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 160--160 [] @tex ttt tmp_geo_element,[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 165--165 [] @texttt const communicator& comm() const { return geo_element_own ership (0).comm(); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 166--166 [] @texttt size_type size(size_type dim) const { return base::data().ge o_element_ownership(dim).size(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 167--167 [] @texttt size_type dis_size(size_type dim) const { return base::data().ge o_element_ownership(dim).dis_size(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 168--168 [] @texttt size_type size() const { return size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 169--169 [] @texttt size_type dis_size() const { return dis_size (map_d imension()); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 172--172 [] @texttt const_reference operator[] (size_type ie) const { return get_geo _element (map_dimension(), ie); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 173--173 [] @texttt reference operator[] (size_type ie) { return get_geo _element (map_dimension(), ie); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 174--174 [] @texttt const_iterator begin (size_type dim) const { return base::data() .begin(dim); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 175--175 [] @texttt const_iterator end (size_type dim) const { return base::data() .end (dim); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 176--176 [] @texttt const_iterator begin () const { return begin(map_di mension()); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 177--177 [] @texttt const_iterator end () const { return end (map_di mension()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 179--179 [] @texttt const_iterator_by_variant begin_by_variant (variant_type variant ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 181--181 [] @texttt const_iterator_by_variant end_by_variant (variant_type variant ) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 184--184 [] @texttt const geo_basic& get_background_geo() const; // co de in geo_domain.h[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 189--189 [] @texttt size_type ige2ios_dis_ige (size_type dim, size_type ige) const { return ige; }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 190--190 [] @texttt size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const { return dis_ige; }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 191--191 [] @texttt size_type ios_ige2dis_ige (size_type dim, size_type ios_ige) con st { return ios_ige; }[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 195--195 [] @texttt bool operator== (const geo_basic& omega2) const { return base::data().operator== (omega2.data()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 202--202 [] @texttt void dump (std::string name) const { base::data().dump (n ame); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 203--203 [] @texttt bool check (bool verbose = true) const { return base::data().che ck(verbose); }[] [65] Overfull \hbox (141.41289pt too wide) in paragraph at lines 209--209 []@texttt class geo_basic : public smart_pointer_clone > {[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 227--227 [] @texttt typedef typename rep::const_iterator_by_variant const_iterator_b y_variant;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 233--233 [] @texttt geo_basic (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 234--234 [] @texttt void load (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 235--235 [] @texttt geo_basic (const domain_indirect_basic& dom, const geo_basic& omega);[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 240--240 [] @texttt const disarray,distributed>& node_list,[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 241--241 [] @texttt const std::array >,distributed>,[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 247--247 [] @texttt std::string name() const { return base::data( ).name(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 248--248 [] @texttt std::string familyname() const { return base::data( ).familyname(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 249--249 [] @texttt size_type dimension() const { return base::data( ).dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 250--250 [] @texttt size_type map_dimension() const { return base::data( ).map_dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 251--251 [] @texttt size_type serial_number() const { return base::data( ).serial_number(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 252--252 [] @texttt size_type variant() const { return base::data( ).variant(); }[] [66] Overfull \hbox (124.16682pt too wide) in paragraph at lines 253--253 [] @texttt coordinate_type coordinate_system() const { return base::data( ).coordinate_system(); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 254--254 [] @texttt std::string coordinate_system_name() const { return space_const ant::coordinate_system_name(coordinate_system()); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 255--255 [] @texttt const basis_basic& get_piola_basis() const { return base::dat a().get_piola_basis(); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 256--256 [] @texttt size_type order() const { return base::data( ).get_piola_basis().degree(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 257--257 [] @texttt const node_type& xmin() const { return base::data( ).xmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 258--258 [] @texttt const node_type& xmax() const { return base::data( ).xmax(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 259--259 [] @texttt const T& hmin() const { return base::data( ).hmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 260--260 [] @texttt const T& hmax() const { return base::data( ).hmax(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 262--262 [] @texttt { return base::data().geo_element_ownership (dim); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 263--263 [] @texttt const geo_size& sizes() const { return base::da ta().sizes(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 264--264 [] @texttt const geo_size& ios_sizes() const { return base::da ta().ios_sizes(); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 267--267 [] @texttt const_reference dis_get_geo_element (size_type dim, size_type di s_ige) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 268--268 [] @texttt { return base::data().dis_get_geo_element (dim, dis_ ige); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 269--269 [] @texttt const geo_element& bgd2dom_geo_element (const geo_element& bgd_K ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 271--271 [] @texttt const geo_element& dom2bgd_geo_element (const geo_element& dom_K ) const[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 274--274 [] @texttt return base::data().neighbour (ie, loc_isi d); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 280--280 [] @texttt size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const {[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 285--285 [] @texttt const node_type& node(size_type inod) const { return bas e::data().node(inod); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 286--286 [] @texttt const node_type& dis_node(size_type dis_inod) const { return bas e::data().dis_node(dis_inod); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 287--287 [] @texttt void dis_inod (const geo_element& K, std::vector& dis _inod) const {[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 289--289 [] @texttt node_type piola (const geo_element& K, const node_type& hat_x) c onst { return base::data().piola (K, hat_x); }[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 290--290 [] @texttt const disarray& get_nodes() const { retur n base::data().get_nodes(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 292--292 [] @texttt size_type n_domain_indirect () const { return base::data().n_dom ain_indirect (); }[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 293--293 [] @texttt bool have_domain_indirect (const std::string& name) const { retu rn base::data().have_domain_indirect (name); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 294--294 [] @texttt const domain_indirect_basic& get_domain_indirect (s ize_type i) const {[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 296--296 [] @texttt const domain_indirect_basic& get_domain_indirect (c onst std::string& name) const {[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 298--298 [] @texttt void insert_domain_indirect (const domain_indirect_basic& dom) const {[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 301--301 [] @texttt size_type n_domain () const { return base::data().n_domain_indir ect (); }[] [67] Overfull \hbox (83.92601pt too wide) in paragraph at lines 310--310 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 314--314 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (239.14058pt too wide) in paragraph at lines 316--316 [] @texttt void locate (const disarray, distributed>& x, dis array& dis_ie) const[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 322--322 [] @texttt { return base::data().seq_tr ace_move (x,v,y); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 327--327 [] @texttt { return base::data().dis_tr ace_move (x,v,y); }[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 333--333 [] @texttt { return base::data().trace_ ray_boundary (x,v,dis_ie,y); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 339--339 [] @texttt { return base::data().trace_ move (x,v,dis_ie,y); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 343--343 [] @texttt { return base::data().seq_ne arest (x, x_nearest); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 347--347 [] @texttt { return base::data().dis_ne arest (x, x_nearest); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 350--350 [] @texttt disarray,distributed>& x_ne arest,[] [68] Overfull \hbox (37.93651pt too wide) in paragraph at lines 351--351 [] @texttt disarray& dis_ ie) const[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 352--352 [] @texttt { base::data().nearest (x, x _nearest, dis_ie); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 357--357 [] @texttt size_type dis_inod2dis_iv (size_type dis_inod) const { return ba se::data().dis_inod2dis_iv(dis_inod); }[] Overfull \hbox (388.60646pt too wide) in paragraph at lines 359--359 [] @texttt void set_coordinate_system (std::string sys_coord_name) { set_co ordinate_system (space_constant::coordinate_system(sys_coord_name)); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 363--363 [] @texttt void build_by_subdividing (const geo_basic& omega , size_type k);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 367--367 [] @texttt size_type size(size_type dim) const { return base::data().ge o_element_ownership(dim).size(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 368--368 [] @texttt size_type dis_size(size_type dim) const { return base::data().ge o_element_ownership(dim).dis_size(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 369--369 [] @texttt const communicator& comm() const { return geo_element_own ership (0).comm(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 370--370 [] @texttt size_type size() const { return size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 371--371 [] @texttt size_type dis_size() const { return dis_size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 377--377 [] @texttt const_iterator begin (size_type dim) const { return base::data() .begin(dim); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 378--378 [] @texttt const_iterator end (size_type dim) const { return base::data() .end (dim); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 379--379 [] @texttt const_iterator begin () const { return begin(map_di mension()); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 380--380 [] @texttt const_iterator end () const { return end (map_di mension()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 382--382 [] @texttt const_iterator_by_variant begin_by_variant (variant_type variant ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 384--384 [] @texttt const_iterator_by_variant end_by_variant (variant_type variant ) const[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 387--387 [] @texttt const geo_basic& get_background_geo() const; // c ode in geo_domain.h[] Overfull \hbox (273.6327pt too wide) in paragraph at lines 392--392 [] @texttt bool operator== (const geo_basic& omega2) const { return base::data().operator== (omega2.data()); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 396--396 [] @texttt odiststream& put (odiststream& ops) const { return base::data(). put (ops); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 399--399 [] @texttt bool check (bool verbose = true) const { return base::data().che ck(verbose); }[] [69] Overfull \hbox (66.67995pt too wide) in paragraph at lines 404--404 [] @texttt std::array& loc_nd of_by_variant,[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 405--405 [] @texttt disarray& idof2i os_dis_idof) const[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 406--406 [] @texttt { base::data().set_ios_permutation (loc_ndof_by_variant, idof2i os_dis_idof); }[] ) (../../nfem/plib/space.2texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 28--28 []@texttt class space_basic : public smart_pointer > {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 40--40 [] @texttt space_basic (const geo_basic& omega = (geo_basic()),[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt std::string approx = "", std::string valued = "sca lar");[] [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 63--63 [] @texttt space_component_const operator[] (size_type i_comp ) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 69--69 [] @texttt void dis_idof (const geo_element& K, std::vector& dis _idof) const;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 90--90 [] @texttt point_basic vector_momentum (const Function& f, size_type ido f) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [] @texttt tensor_basic tensor_momentum (const Function& f, size_type id of) const;[] [71] Overfull \hbox (55.18257pt too wide) in paragraph at lines 96--96 [] @texttt const space_basic& Wh, const std::string& dom_ name) const;[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 99--99 [] @texttt const space_basic& Wh, const geo_basic& bgd_gamma) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 101--101 [] @texttt const std::set& ext_iu_set() const { return base::dat a().ext_iu_set(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 102--102 [] @texttt const std::set& ext_ib_set() const { return base::dat a().ext_ib_set(); }[] Overfull \hbox (227.6432pt too wide) in paragraph at lines 106--106 [] @texttt bool operator== (const space_basic& V2) const { re turn base::data().operator==(V2.data()); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 107--107 [] @texttt bool operator!= (const space_basic& V2) const { re turn ! operator== (V2); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 108--108 [] @texttt friend bool are_compatible (const space_basic& V1, const space_basic& V2) {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 115--115 []@texttt class space_basic : public smart_pointer > {[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 127--127 [] @texttt space_basic (const geo_basic& omega = (geo_basic< T,distributed>()),[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 128--128 [] @texttt std::string approx = "", std::string valued = "sca lar");[] [72] Overfull \hbox (37.93651pt too wide) in paragraph at lines 150--150 [] @texttt space_component_const operator[] (size_type i_com p) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 156--156 [] @texttt void dis_idof (const geo_element& K, std::vector& dis _idof) const;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 178--178 [] @texttt point_basic vector_momentum (const Function& f, size_type ido f) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 181--181 [] @texttt tensor_basic tensor_momentum (const Function& f, size_type id of) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 184--184 [] @texttt const space_basic& Wh, const std::string& dom _name) const;[] Overfull \hbox (141.41289pt too wide) in paragraph at lines 187--187 [] @texttt const space_basic& Wh, const geo_basic& bgd_gamma) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 189--189 [] @texttt const std::set& ext_iu_set() const { return base::dat a().ext_iu_set(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 190--190 [] @texttt const std::set& ext_ib_set() const { return base::dat a().ext_ib_set(); }[] [73] Overfull \hbox (233.39189pt too wide) in paragraph at lines 194--194 [] @texttt bool operator== (const space_basic& V2) const { r eturn base::data().operator==(V2.data()); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 195--195 [] @texttt bool operator!= (const space_basic& V2) const { r eturn ! operator== (V2); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 196--196 [] @texttt friend bool are_compatible (const space_basic& V1 , const space_basic& V2) {[] ) (../../nfem/plib/test.2texi) (../../nfem/geo_element/point.2texi [74] Overfull \hbox (32.18782pt too wide) in paragraph at lines 27--27 [] @texttt explicit point_basic () { _x[0] = T(); _x[1] = T(); _x[2] = T(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 41--41 [] @texttt { _x[0] = p._x[0]; _x[1] = p._x[1]; _x[2] = p._x[2]; return *this; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 49--49 [] @texttt T& operator[](int i_coord) { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 50--50 [] @texttt const T& operator[](int i_coord) const { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 51--51 [] @texttt T& operator()(int i_coord) { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 52--52 [] @texttt const T& operator()(int i_coord) const { return _x[i_coord% 3]; }[] [75] Overfull \hbox (26.43913pt too wide) in paragraph at lines 79--79 [] @texttt { return _x[0] == v[0] && _x[1] == v[1] && _x[2] == v[2]; }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 85--85 [] @texttt { _x[0] += v[0]; _x[1] += v[1]; _x[2] += v[2]; retur n *this; }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 88--88 [] @texttt { _x[0] -= v[0]; _x[1] -= v[1]; _x[2] -= v[2]; retur n *this; }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 97--97 [] @texttt { return point_basic (_x[0]+v[0], _x[1]+v[1], _x[ 2]+v[2]); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 103--103 [] @texttt { return point_basic (_x[0]-v[0], _x[1]-v[1], _x[ 2]-v[2]); }[] [76] Overfull \hbox (49.43388pt too wide) in paragraph at lines 116--116 [] @texttt { return point_basic (_x[0]/v[0], _x[1]/v[1], _x[ 2]/v[2]); }[] [77] Overfull \hbox (72.42863pt too wide) in paragraph at lines 191--191 []@texttt T mixt (const point_basic& u, const point_basic& v, const poin t_basic& w);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 193--193 []@texttt // robust(exact) floating point predicates: return the sign of the v alue as (0, > 0, < 0)[] [78] Overfull \hbox (14.94176pt too wide) in paragraph at lines 231--231 []@texttt lexicographically_less (const point_basic& a, const point_basic& b)[] ) (../../nfem/geo_element/quadrature_option_type.2texi [79] Overfull \hbox (14.94176pt too wide) in paragraph at lines 49--49 [] @texttt quadrature_option_type& operator= (const quadrature_option_type& q opt);[] ) (../../nfem/geo_element/tensor.2texi [80] Overfull \hbox (66.67995pt too wide) in paragraph at lines 34--34 [] @texttt tensor_basic (const std::initializer_list >& il);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [] @texttt void set_row (const point_basic& r, size_t i, size_t d = 3);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 47--47 [] @texttt void set_column (const point_basic& c, size_t j, size_t d = 3);[] [81] Overfull \hbox (83.92601pt too wide) in paragraph at lines 66--66 [] @texttt bool operator!= (const tensor_basic& b) const { return ! operator== (b); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 85--85 [] @texttt // where q=(q1,q2,q3) are eigenvectors in rows (othonormal m atrix)[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 86--86 [] @texttt // and d=(d1,d2,d3) are eigenvalues, sorted in decreasing order d1 >= d2 >= d3[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 94--94 [] @texttt // where u=(u1,u2,u3) are left pseudo-eigenvectors in rows ( othonormal matrix)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 95--95 [] @texttt // v=(v1,v2,v3) are right pseudo-eigenvectors in rows (othonormal matrix)[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 96--96 [] @texttt // and s=(s1,s2,s3) are eigenvalues, sorted in decreasing order s1 >= s2 >= s3[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 98--98 [] @texttt point_basic svd (tensor_basic& u, tensor_basic& v, size_t dim = 3) const;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 108--108 []@texttt point_basic operator* (const point_basic& yt, const tensor_ba sic& a);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 112--112 []@texttt void prod (const tensor_basic& a, const tensor_basic& b, tenso r_basic& result,[] [82] Overfull \hbox (89.6747pt too wide) in paragraph at lines 121--121 []@texttt tensor_basic otimes (const point_basic& u, const point_basic& v, size_t d=3);[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 152--152 []@texttt void cumul_otimes (tensor_basic& t, const point_basic& a, cons t point_basic& b, size_t na = 3);[] Overfull \hbox (233.39189pt too wide) in paragraph at lines 154--154 []@texttt void cumul_otimes (tensor_basic& t, const point_basic& a, cons t point_basic& b, size_t na, size_t nb);[] ) (../../nfem/geo_element/tensor3.2texi [83] Overfull \hbox (14.94176pt too wide) in paragraph at lines 39--39 [] @texttt tensor3_basic& operator/= (const T& k) { return operator*= (1./ k); }[] ) (../../nfem/geo_element/tensor4.2texi [84] Overfull \hbox (14.94176pt too wide) in paragraph at lines 30--30 [] @texttt tensor4_basic (const std::initializer_list > > >& il);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt T& operator()(size_type i, size_type j, size_type k, size_ty pe l);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 42--42 [] @texttt const T& operator()(size_type i, size_type j, size_type k, size_ty pe l) const;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 50--50 [] @texttt tensor4_basic& operator/= (const T& k) { return operator*= (1./ k); }[] [85]) (../../skit/plib2/asr.2texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 14--14 []@texttt template >[] [86] Overfull \hbox (37.93651pt too wide) in paragraph at lines 25--25 [] @texttt dis_reference (typename base::dis_reference row_dis_i, size_ty pe dis_j)[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 39--39 [] @texttt : base(distributor(), row_type(alloc), alloc), _col_ownership( ), _nnz(0), _dis_nnz(0) {}[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 41--41 [] @texttt asr (const distributor& row_ownership, const distributor& col_ow nership, const A& alloc = A())[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 42--42 [] @texttt : base(row_ownership, row_type(alloc), alloc), _col_ownership( col_ownership), _nnz(0), _dis_nnz(0) {}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 48--48 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 66--66 [] @texttt const distributor& row_ownership() const { return base::ownershi p(); }[] [87] Overfull \hbox (66.67995pt too wide) in paragraph at lines 75--75 [] @texttt // dis_entry_assembly_end is redefined in order to recompute _nn z and _dis_nnz[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 76--76 [] @texttt void dis_entry_assembly_begin() { base::dis_entry_assembly_begin (pair_set_add_op()); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 77--77 [] @texttt void dis_entry_assembly_end() { base::dis_entry_assembly_end (pair_set_add_op()); _recompute_nnz(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 78--78 [] @texttt void dis_entry_assembly() { dis_entry_assembly_begin(); di s_entry_assembly_end(); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 86--86 [] @texttt odiststream& put_seq (odiststream& ops, size_type first_dis_i = 0) const;[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 87--87 [] @texttt odiststream& put_seq_sparse_matlab (odiststream& ops, size_type first_dis_i = 0) const;[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 88--88 [] @texttt odiststream& put_seq_matrix_market (odiststream& ops, size_type first_dis_i = 0) const;[] ) (../../skit/plib2/csr.2texi [88] Overfull \hbox (26.43913pt too wide) in paragraph at lines 46--46 [] @texttt explicit csr(const asr& a) : base(new_macro(rep( a))) {}[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 47--47 [] @texttt void resize (size_type loc_nrow1 = 0, size_type loc_ncol1 = 0, s ize_type loc_nnz1 = 0)[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 49--49 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership, size_type nnz1 = 0)[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 55--55 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 56--56 [] @texttt csr (const std::initializer_list > & init_list);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 62--62 [] @texttt const distributor& row_ownership() const { return base::data().r ow_ownership(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 63--63 [] @texttt const distributor& col_ownership() const { return base::data().c ol_ownership(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 64--64 [] @texttt size_type dis_nrow () const { return row_ownership( ).dis_size(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 65--65 [] @texttt size_type dis_ncol () const { return col_ownership( ).dis_size(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 66--66 [] @texttt size_type dis_nnz () const { return base::data().n nz(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 68--68 [] @texttt bool is_symmetric() const { return base::data().i s_symmetric(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 69--69 [] @texttt void set_symmetry (bool is_symm) const { base::data().set_symm etry(is_symm); }[] [89] Overfull \hbox (95.42339pt too wide) in paragraph at lines 70--70 [] @texttt void set_symmetry_by_check (const T& tol = std::numeric_limits::epsilon()) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 71--71 [] @texttt { base::data().set_symm etry_by_check(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 72--72 [] @texttt bool is_definite_positive() const { return base::data().i s_definite_positive(); }[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 73--73 [] @texttt void set_definite_positive (bool is_defpos) const { base::data() .set_definite_positive(is_defpos); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 74--74 [] @texttt size_type pattern_dimension() const { return base::data().p attern_dimension(); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 75--75 [] @texttt void set_pattern_dimension(size_type dim) const { base::data().s et_pattern_dimension(dim); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 76--76 [] @texttt T max_abs () const { return base::data().m ax_abs(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 79--79 [] @texttt size_type nrow () const { return base::data().n row(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 80--80 [] @texttt size_type ncol () const { return base::data().n col(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 81--81 [] @texttt size_type nnz () const { return base::data().n nz(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 84--84 [] @texttt size_type row_first_index () const { return base::data().r ow_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 85--85 [] @texttt size_type row_last_index () const { return base::data().r ow_last_index(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 86--86 [] @texttt size_type col_first_index () const { return base::data().c ol_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 87--87 [] @texttt size_type col_last_index () const { return base::data().c ol_last_index(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 89--89 [] @texttt const_iterator begin() const { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 90--90 [] @texttt const_iterator end() const { return base::data().e nd(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 91--91 [] @texttt iterator begin_nonconst() { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 92--92 [] @texttt iterator end_nonconst() { return base::data().e nd(); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 96--96 [] @texttt const_iterator ext_begin() const { return const_iterator (); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 97--97 [] @texttt const_iterator ext_end() const { return const_iterator (); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 105--105 [] @texttt void mult (const vec& x, vec& y) const {[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 108--108 [] @texttt vec operator* (const vec& x) const {[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 113--113 [] @texttt void trans_mult (const vec& x, vec& y) const {[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 116--116 [] @texttt vec trans_mult (const vec& x) const {[] [90] Overfull \hbox (20.69044pt too wide) in paragraph at lines 133--133 [] @texttt void dump (const std::string& name) const { base::data().dump(na me); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 167--167 []@texttt class csr : public smart_pointer > {[] [91] Overfull \hbox (32.18782pt too wide) in paragraph at lines 186--186 [] @texttt explicit csr(const asr& a) : base(new_macro(rep (a))) {}[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 187--187 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership, size_type nnz1 = 0)[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 193--193 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 194--194 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 200--200 [] @texttt const distributor& row_ownership() const { return base::data().r ow_ownership(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 201--201 [] @texttt const distributor& col_ownership() const { return base::data().c ol_ownership(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 202--202 [] @texttt size_type dis_nrow () const { return row_ownership( ).dis_size(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 203--203 [] @texttt size_type dis_ncol () const { return col_ownership( ).dis_size(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 204--204 [] @texttt size_type dis_nnz () const { return base::data().d is_nnz(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 205--205 [] @texttt size_type dis_ext_nnz () const { return base::data().d is_ext_nnz(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 206--206 [] @texttt bool is_symmetric() const { return base::data().i s_symmetric(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 207--207 [] @texttt void set_symmetry (bool is_symm) const { base::data().set_symm etry(is_symm); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 208--208 [] @texttt void set_symmetry_by_check (const T& tol = std::numeric_limits::epsilon()) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 209--209 [] @texttt { base::data().set_symm etry_by_check(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 210--210 [] @texttt bool is_definite_positive() const { return base::data().i s_definite_positive(); }[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 211--211 [] @texttt void set_definite_positive (bool is_defpos) const { base::data() .set_definite_positive(is_defpos); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 212--212 [] @texttt size_type pattern_dimension() const { return base::data().p attern_dimension(); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 213--213 [] @texttt void set_pattern_dimension(size_type dim) const { base::data().s et_pattern_dimension(dim); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 214--214 [] @texttt T max_abs () const { return base::data().m ax_abs(); }[] [92] Overfull \hbox (32.18782pt too wide) in paragraph at lines 217--217 [] @texttt size_type nrow () const { return base::data().n row(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 218--218 [] @texttt size_type ncol () const { return base::data().n col(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 219--219 [] @texttt size_type nnz () const { return base::data().n nz(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 222--222 [] @texttt size_type row_first_index () const { return base::data().r ow_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 223--223 [] @texttt size_type row_last_index () const { return base::data().r ow_last_index(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 224--224 [] @texttt size_type col_first_index () const { return base::data().c ol_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 225--225 [] @texttt size_type col_last_index () const { return base::data().c ol_last_index(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 227--227 [] @texttt const_iterator begin() const { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 228--228 [] @texttt const_iterator end() const { return base::data().e nd(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 229--229 [] @texttt iterator begin_nonconst() { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 230--230 [] @texttt iterator end_nonconst() { return base::data().e nd(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 233--233 [] @texttt size_type ext_nnz() const { return base::data().e xt_nnz(); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 234--234 [] @texttt const_iterator ext_begin() const { return base::data().e xt_begin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 235--235 [] @texttt const_iterator ext_end() const { return base::data().e xt_end(); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 236--236 [] @texttt iterator ext_begin_nonconst() { return base::data().e xt_begin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 237--237 [] @texttt iterator ext_end_nonconst() { return base::data().e xt_end(); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 238--238 [] @texttt size_type jext2dis_j (size_type jext) const { return base::data( ).jext2dis_j(jext); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 244--244 [] @texttt void mult (const vec& x, vec& y) const {[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 247--247 [] @texttt vec operator* (const vec& x) const {[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 252--252 [] @texttt void trans_mult (const vec& x, vec& y) const {[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 255--255 [] @texttt vec trans_mult (const vec& x) const {[] [93] Overfull \hbox (20.69044pt too wide) in paragraph at lines 272--272 [] @texttt void dump (const std::string& name) const { base::data().dump(na me); }[] [94]) (../../skit/plib2/dia.2texi [95]) (../../skit/plib2/disarray.2texi [96] [97] Overfull \hbox (89.6747pt too wide) in paragraph at lines 86--86 []@texttt class disarray : public smart_pointer > {[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 107--107 [] @texttt disarray (size_type loc_size = 0, const T& init_val = T(), const A& alloc = A());[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 109--109 [] @texttt disarray (const distributor& ownership, const T& init_val = T(), const A& alloc = A());[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 114--114 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 116--116 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 117--117 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 120--120 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 121--121 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 122--122 [] @texttt reference operator() (size_type i) { return base::da ta().operator[] (i); }[] [98] Overfull \hbox (112.66945pt too wide) in paragraph at lines 123--123 [] @texttt const_reference operator() (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 124--124 [] @texttt const_reference dis_at (size_type dis_i) const { return operator [] (dis_i); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 133--133 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::data(). dis_entry(dis_i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 146--146 [] @texttt template void set_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 147--147 [] @texttt template void append_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (216.14583pt too wide) in paragraph at lines 148--148 [] @texttt template void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const {}[] Overfull \hbox (216.14583pt too wide) in paragraph at lines 149--149 [] @texttt template void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const {}[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 154--154 [] @texttt void repartition ( // old_numberin g for *this[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 156--156 [] @texttt disarray& new_disarray, // new_ownershi p (created)[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 159--159 [] @texttt { return base::data().repartition (partition, new_disarray, old_numbering, new_numbering); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 162--162 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 164--164 [] @texttt disarray& new_disarray) const // new_owne rship (already allocated)[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 165--165 [] @texttt { return base::data().permutation_apply (new_numbering, new_ disarray); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 167--167 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 168--168 [] @texttt disarray& inew2dis_iold) const // new_ownership[] [99] Overfull \hbox (129.91551pt too wide) in paragraph at lines 173--173 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 174--174 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 176--176 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 178--178 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 179--179 [] @texttt void dump (std::string name) const { return base::data().dump(na me); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 185--185 []@texttt class disarray : public smart_pointer > {[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 206--206 [] @texttt disarray (const distributor& ownership = distributor(), co nst T& init_val = T(), const A& alloc = A());[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 207--207 [] @texttt void resize (const distributor& ownership = distributor(), const T& init_val = T());[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 211--211 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 213--213 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 214--214 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 217--217 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 218--218 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 219--219 [] @texttt reference operator() (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 220--220 [] @texttt const_reference operator() (size_type i) const { return base::da ta().operator[] (i); }[] [100] Overfull \hbox (377.10909pt too wide) in paragraph at lines 230--230 [] @texttt void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().append_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (359.86302pt too wide) in paragraph at lines 233--233 [] @texttt void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().get_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 236--236 [] @texttt void append_dis_indexes (const Set& ext_idx_set) const { base::d ata().append_dis_indexes (ext_idx_set); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 240--240 [] @texttt void set_dis_indexes (const Set& ext_idx_set) const { base::d ata().set_dis_indexes (ext_idx_set); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 242--242 [] @texttt const T& dis_at (size_type dis_i) const { return base::data().di s_at (dis_i); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 245--245 [] @texttt const scatter_map_type& get_dis_map_entries() const { return bas e::data().get_dis_map_entries(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 249--249 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::data(). dis_entry(dis_i); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 252--252 [] @texttt void dis_entry_assembly_begin (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly_begin (my_set_op); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 254--254 [] @texttt void dis_entry_assembly_end (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly_end (my_set_op); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 256--256 [] @texttt void dis_entry_assembly (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly (my_set_op); }[] Overfull \hbox (302.37614pt too wide) in paragraph at lines 258--258 [] @texttt void dis_entry_assembly_begin() { base::data().template dis_entr y_assembly_begin::type>(); }[] Overfull \hbox (290.87877pt too wide) in paragraph at lines 259--259 [] @texttt void dis_entry_assembly_end() { base::data().template dis_entr y_assembly_end::type>(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 260--260 [] @texttt void dis_entry_assembly() { dis_entry_assembly_begin(); di s_entry_assembly_end(); }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 265--265 [] @texttt void repartition ( // old_numbering for *this[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 267--267 [] @texttt disarray& new_disarray, // new_own ership (created)[] [101] Overfull \hbox (331.11958pt too wide) in paragraph at lines 270--270 [] @texttt { return base::data().repartition (partition.data(), new_dis array.data(), old_numbering.data(), new_numbering.data()); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 273--273 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 275--275 [] @texttt disarray& new_disarray) const // new_owne rship (already allocated)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 276--276 [] @texttt { base::data().permutation_apply (new_numbering.data(), new_ disarray.data()); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 278--278 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 279--279 [] @texttt disarray& inew2dis_iold) const // new_ownership[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 284--284 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 285--285 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 286--286 [] @texttt void dump (std::string name) const { return base::data().du mp(name); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 289--289 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 291--291 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 292--292 [] @texttt template odiststream& permuted_put _values ([] Overfull \hbox (239.14058pt too wide) in paragraph at lines 293--293 [] @texttt odiststream& ops, const disarray& perm, PutFunction put_element) const[] Overfull \hbox (428.84727pt too wide) in paragraph at lines 294--294 [] @texttt { return base::data().permuted_put_values (ops, perm.data(), put_element); }[] ) (../../skit/plib2/distributor.2texi [102] Overfull \hbox (14.94176pt too wide) in paragraph at lines 54--54 [] @texttt /// find iproc associated to a global index dis_i: CPU=log(n proc)[] [103]) (../../skit/plib2/diststream.2texi [104] Overfull \hbox (95.42339pt too wide) in paragraph at lines 81--81 [] @texttt io::mode_type mode = io::out, const communicator& comm = communicator());[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 83--83 [] @texttt io::mode_type mode, const communicator& comm = communi cator());[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 84--84 [] @texttt odiststream (std::string filename, std::string suffix, const commu nicator& comm);[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 86--86 [] @texttt odiststream(std::ostream& os, const communicator& comm = communica tor());[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 92--92 [] @texttt io::mode_type mode = io::out, const communicator& comm = communicator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 94--94 [] @texttt io::mode_type mode, const communicator& comm = communic ator());[] [105] Overfull \hbox (32.18782pt too wide) in paragraph at lines 129--129 [] @texttt idiststream (std::istream& is, const communicator& comm = communic ator());[] [106]) (../../skit/plib2/environment.2texi) (../../skit/plib2/eye.2texi) (../../skit/plib2/solver.2texi [107] [108] Overfull \hbox (158.65895pt too wide) in paragraph at lines 104--104 [] @texttt explicit solver_basic (const csr& a, const solver_option_type & opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 117--117 []@texttt solver_basic ldlt(const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 119--119 []@texttt solver_basic lu (const csr& a, const solver_option_type& opt = solver_option_type());[] [109] Overfull \hbox (147.16158pt too wide) in paragraph at lines 126--126 []@texttt solver_basic ic0 (const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 128--128 []@texttt solver_basic ilu0(const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 130--130 []@texttt solver_basic ldlt_seq(const csr& a, const solver_option_ty pe& opt = solver_option_type());[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 132--132 []@texttt solver_basic lu_seq (const csr& a, const solver_option_ty pe& opt = solver_option_type());[] ) (../../skit/plib2/solver_abtb.2texi [110] Overfull \hbox (43.6852pt too wide) in paragraph at lines 66--66 [] @texttt solver_abtb_basic (const csr& a, const csr& b, const csr & mp,[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 69--69 [] @texttt solver_abtb_basic (const csr& a, const csr& b, const csr & c, const csr& mp,[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 75--75 [] @texttt void solve (const vec& f, const vec& g, vec& u, vec & p) const;[] [111]) (../../skit/plib2/solver_option_type.2texi Overfull \hbox (158.65895pt too wide) in paragraph at lines 19--19 [] @texttt static const long int decide = -1; // indicate the solver will try to choose the best method[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 23--23 [] @texttt mutable long int iterative; // indicate if we want to u se iterative solver[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 24--24 [] @texttt Float tol; // tolerance when using ite rative methode[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 25--25 [] @texttt size_type max_iter; // maximum number of iterat ion when using iterative method[] Overfull \hbox (319.62221pt too wide) in paragraph at lines 26--26 [] @texttt size_type n_refinement; // number of iterative refi nement, when using direct method (umfpack only support it)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 27--27 [] @texttt bool compute_determinant; // compute also det, when using direct method[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28--28 [] @texttt std::string prefered_library; // e.g. "umfpack", when ava ilable[] Overfull \hbox (371.3604pt too wide) in paragraph at lines 31--31 [] @texttt bool force_seq; // (still buggy; when using direct) restrict to diagonal blocs per process (e.g. mumps solver)[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 32--32 [] @texttt size_type level_of_fill; // (in development) Level o f fill [1:5] for incomplete factorisation[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 33--33 [] @texttt size_type amalgamation; // (in development) Level o f amalgamation [10:70] for Kass[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 34--34 [] @texttt size_type ooc; // (in development) out-of- core limit (Mo/percent depending on compilation options)[] [112]) (../../skit/plib2/vec.2texi [113] Overfull \hbox (37.93651pt too wide) in paragraph at lines 33--33 [] @texttt typedef std::ptrdiff_t differe nce_type;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 36--36 [] @texttt typedef typename base::const_reference const_r eference;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 38--38 [] @texttt typedef typename base::const_iterator const_i terator;[] [114] Overfull \hbox (14.94176pt too wide) in paragraph at lines 105--105 [] @texttt vec (const std::initializer_list >& init_l ist);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 106--106 [] @texttt vec& operator= (const std::initializer_list >& init_list);[] ) (../../util/lib/rheostream.2texi [115] [116] Overfull \hbox (101.17207pt too wide) in paragraph at lines 144--144 []@texttt class irheostream : public boost::iostreams::filtering_stream {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 146--146 [] @texttt irheostream() : boost::iostreams::filtering_stream() {}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 147--147 [] @texttt irheostream(const std::string& name, const std::string& suffix = std::string());[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 149--149 [] @texttt void open (const std::string& name, const std::string& suffix = std::string());[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 155--155 []@texttt class orheostream : public boost::iostreams::filtering_stream {[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 157--157 [] @texttt orheostream() : boost::iostreams::filtering_stream() {}[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 158--158 [] @texttt orheostream(const std::string& name, const std::string& suffix = std::string(),[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 161--161 [] @texttt void open (const std::string& name, const std::string& suffix = std::string(),[] [117] Overfull \hbox (43.6852pt too wide) in paragraph at lines 177--177 []@texttt bool scatch (std::istream& in, const std::string& ch, bool full_matc h = true);[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 183--183 []@texttt std::string delete_suffix (const std::string& name, const std::strin g& suffix);[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 192--192 []@texttt std::string get_full_name_from_rheo_path (const std::string& rootnam e, const std::string& suffix);[] ) Chapter 6 [118] (../../nfem/plib/adapt.4texi [119] Overfull \hbox (124.16682pt too wide) in paragraph at lines 115--115 [] @texttt Float anglecorner; // angle below which bamg considers 2 consec utive edge to be part of[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 119--119 [] @texttt isotropic(true), err(1e-2), errg(1e-1), hcoef(1), hmin(0.000 1), hmax(0.3), ratio(0), cutoff(1e-7),[] [120] Overfull \hbox (89.6747pt too wide) in paragraph at lines 122--122 [] @texttt anisomax(1e6), clean(false), additional("-RelError"), double _precision(false),[] ) (../../nfem/plib/compose.4texi) (../../nfem/plib/damped_newton.4texi [121] Overfull \hbox (118.41814pt too wide) in paragraph at lines 34--34 []@texttt int damped_newton (Problem P, Field& u, Real& tol, Size& max_iter, o diststream* p_derr=0) {[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 35--35 [] @texttt return damped_newton(P, newton_identity_preconditioner(), u, tol, max_iter, p_derr);[] ) (../../nfem/plib/integrate.4texi [122] Overfull \hbox (5.69455pt too wide) in paragraph at lines 48--54 []@textrm The last ar-gu-ment spec-i-fies the quadra-ture for-mu-lae (see $@tex tsy h$@textrm un-de-fined$@textsy i$ @textrm [quadra-ture[]option[]type ) (../../nfem/plib/interpolate.4texi [123]) (../../nfem/plib/level_set.4texi [124]) (../../nfem/plib/limiter.4texi) (../../nfem/plib/newton.4texi [125] Overfull \hbox (112.66945pt too wide) in paragraph at lines 43--43 []@texttt int newton (Problem P, Field& uh, Float& tol, size_t& max_iter, odis tstream *p_derr = 0) {[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 44--44 [] @texttt if (p_derr) *p_derr << "# Newton:" << std::endl << "# n r" << st d::endl << std::flush;[] ) (../../nfem/plib/riesz.4texi [126] [127] [128]) (../../skit/plib2/diag.4texi) (../../skit/plib2/dis_time.4texi [129]) (../../skit/plib2/mixed_solver.4texi Overfull \hbox (175.90501pt too wide) in paragraph at lines 20--20 [] @texttt template [] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21--21 [] @texttt int pcg_abtb (const Matrix& A, const Matrix& B, Vector& u, Vecto r& p,[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 26--26 [] @texttt template [] Overfull \hbox (118.41814pt too wide) in paragraph at lines 27--27 [] @texttt int pcg_abtbc (const Matrix& A, const Matrix& B, const Matrix& C , Vector& u, Vector& p,[] [130]) (../../skit/plib2/pcg.4texi Overfull \hbox (26.43913pt too wide) in paragraph at lines 12--12 [] @texttt template [] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14--14 [] @texttt const Preconditioner &M, int &max_iter, Real &tol, odiststream *p_derr=0);[] [131] Overfull \hbox (11.95166pt too wide) in paragraph at lines 57--63 @textrm Pozo, C. Romine, H. Van der Vorst, SIAM, 1994, @texttt ftp.netlib.org/t emplates/templates.ps[]@textrm . Overfull \hbox (98.24414pt too wide) in paragraph at lines 64--68 @textrm The present im-ple-men-ta-tion is in-spired from @texttt IML++ 1.2[] @t extrm it-er-a-tive method li-brary, @texttt http://math.nist.gov/iml++[]@textrm . Overfull \hbox (158.65895pt too wide) in paragraph at lines 73--73 []@texttt template [] Overfull \hbox (49.43388pt too wide) in paragraph at lines 74--74 []@texttt int pcg(const Matrix &A, Vector &x, const Vector2 &Mb, const Precond itioner &M,[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 75--75 [] @texttt Size &max_iter, Real &tol, odiststream *p_derr = 0, std::str ing label = "cg")[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 82--82 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 88--88 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << n << " " << sqrt(norm2_r/norm2_b) << std::endl;[] [132]) (../../skit/plib2/pgmres.4texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 13--13 [] @texttt int pgmres (const Matrix &A, Vector &x, const Vector &b, const Pr econditioner &M,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 27--27 [] @texttt int status = pgmres (a, x, b, ic0(a), H, dummy, m, max_iter, tol);[] [133] Overfull \hbox (98.24414pt too wide) in paragraph at lines 90--93 @textrm The present im-ple-men-ta-tion is in-spired from @texttt IML++ 1.2[] @t extrm it-er-a-tive method li-brary, @texttt http://math.nist.gov/iml++[]@textrm . Overfull \hbox (14.94176pt too wide) in paragraph at lines 102--102 []@texttt template [] [134] Overfull \hbox (37.93651pt too wide) in paragraph at lines 143--143 []@texttt pgmres (const Matrix &A, Vector &x, const Vector &b, const Precondit ioner &M,[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 144--144 [] @texttt SmallMatrix &H, const SmallVector&, const Size &m, Size &max_i ter, Real &tol,[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 156--156 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] # norm_b=" << norm_b < < std::endl;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 157--157 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] [135] Overfull \hbox (141.41289pt too wide) in paragraph at lines 187--187 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << j << " " << r esidue/norm_b << std::endl;[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 200--200 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << j << " " << res idue/norm_b << std::endl;[] ) (../../skit/plib2/pminres.4texi Overfull \hbox (26.43913pt too wide) in paragraph at lines 12--12 [] @texttt template [] Overfull \hbox (89.6747pt too wide) in paragraph at lines 13--13 [] @texttt int pminres (const Matrix &A, Vector &x, const Vector &b, const Preconditioner &M,[] [136] Overfull \hbox (72.42863pt too wide) in paragraph at lines 62--62 []@texttt template [] Overfull \hbox (66.67995pt too wide) in paragraph at lines 63--63 []@texttt int pminres(const Matrix &A, Vector &x, const Vector &Mb, const Prec onditioner &M,[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 64--64 [] @texttt Size &max_iter, Real &tol, odiststream *p_derr = 0, std::string la bel = "minres")[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 74--74 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] # norm_b=" <[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13--13 [] @texttt int puzawa (const Matrix &A, Vector &x, const Vector &b, const P reconditioner &M,[] [139] Overfull \hbox (78.17732pt too wide) in paragraph at lines 58--58 []@texttt template < class Matrix, class Vector, class Preconditioner, class R eal, class Size>[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 59--59 []@texttt int puzawa(const Matrix &A, Vector &x, const Vector &Mb, const Preco nditioner &M,[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 67--67 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 72--72 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << n << " " << sqrt(norm2_r/norm2_b) << std::endl;[] ) (../../util/lib/catchmark.4texi [140] Overfull \hbox (55.18257pt too wide) in paragraph at lines 27--27 [] @texttt friend std::istream& operator >> (std::istream& is, const ca tchmark& m);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 28--28 [] @texttt friend std::ostream& operator << (std::ostream& os, const ca tchmark& m);[] ) Chapter 7 [141] [142] (../../nfem/plib/basis.7texi [143]) (../../nfem/plib/domain_indirect.7texi [144] Overfull \hbox (158.65895pt too wide) in paragraph at lines 34--34 []@texttt class domain_indirect_basic : public smart_pointer > {[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 59--59 [] @texttt disarray >,sequen tial, heap_allocator >&[] [145] Overfull \hbox (204.64845pt too wide) in paragraph at lines 88--88 [] @texttt idiststream& get (idiststream& ips, const geo_rep& omega, std::vector *ball);[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 94--94 []@texttt class domain_indirect_basic : public smart_pointer > {[] [146] Overfull \hbox (37.93651pt too wide) in paragraph at lines 143--143 [] @texttt idiststream& get (idiststream& ips, const geo_rep & omega);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 145--145 [] @texttt odiststream& put (odiststream& ops, const geo_rep & omega) const;[] ) (../../nfem/plib/geo_domain.7texi) (../../nfem/plib/geo_domain_indirect.7texi [147]) (../../nfem/plib/numbering.7texi [148] Overfull \hbox (43.6852pt too wide) in paragraph at lines 48--48 [] @texttt const basis_basic& get_basis() const { return base::data().get_ basis(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 52--52 [] @texttt void dis_idof (const geo_size& gs, const geo_element& K, st d::vector& dis_idof) const;[] ) (../../nfem/geo_element/edge.7texi) (../../nfem/geo_element/geo_element.7texi [149]) (../../nfem/geo_element/hack_array.7texi [150] Overfull \hbox (66.67995pt too wide) in paragraph at lines 19--19 [] @texttt std::pair param (reference_element::t, 3); // tri angle, order=3[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 52--52 []@texttt class hack_array : public smart_pointer > {[] [151] Overfull \hbox (152.91026pt too wide) in paragraph at lines 73--73 [] @texttt hack_array (size_type loc_size, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 74--74 [] @texttt void resize (const distributor& ownership, const parameter_typ e& param);[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 75--75 [] @texttt hack_array (const distributor& ownership, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [] @texttt void resize (size_type loc_size, const parameter_typ e& param);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 80--80 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 82--82 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 83--83 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 86--86 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 87--87 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 89--89 [] @texttt const_reference dis_at (size_type dis_i) const { return base::da ta().operator[] (dis_i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 98--98 [] @texttt template void append_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 103--103 [] @texttt dis_reference dis_entry (size_type dis_i) { return operator[] (d is_i); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 116--116 [] @texttt void repartition ( // old_numberin g for *this[] [152] Overfull \hbox (49.43388pt too wide) in paragraph at lines 118--118 [] @texttt hack_array& new_array, // new_ownershi p (created)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 121--121 [] @texttt { return base::data().repartition (partition, new_array, old _numbering, new_numbering); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 124--124 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 126--126 [] @texttt hack_array& new_array) const // new_owner ship (already allocated)[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 127--127 [] @texttt { return base::data().permutation_apply (new_numbering, new_ array); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 132--132 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 133--133 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 135--135 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 137--137 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 139--139 [] @texttt void dump (std::string name) const { return base::data().dump(na me); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 146--146 []@texttt class hack_array : public smart_pointer > {[] [153] Overfull \hbox (152.91026pt too wide) in paragraph at lines 168--168 [] @texttt hack_array (const distributor& ownership, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 169--169 [] @texttt void resize (const distributor& ownership, const parameter_typ e& param);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 173--173 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 175--175 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 176--176 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 179--179 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 180--180 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (377.10909pt too wide) in paragraph at lines 190--190 [] @texttt void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().append_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (359.86302pt too wide) in paragraph at lines 193--193 [] @texttt void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().get_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 196--196 [] @texttt void append_dis_indexes (const Set& ext_idx_set) const { base::d ata().append_dis_indexes (ext_idx_set); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 199--199 [] @texttt void set_dis_indexes (const Set& ext_idx_set) { base::data() .set_dis_indexes (ext_idx_set); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 201--201 [] @texttt const_reference dis_at (size_type dis_i) const { return base::da ta().dis_at (dis_i); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 204--204 [] @texttt const scatter_map_type& get_dis_map_entries() const { return bas e::data().get_dis_map_entries(); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 206--206 [] @texttt void update_dis_entries() const { base::data().update_dis_entrie s(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 210--210 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::d ata().dis_entry(dis_i); }[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 212--212 [] @texttt void dis_entry_assembly() { return base::d ata().dis_entry_assembly(); }[] [154] Overfull \hbox (244.88927pt too wide) in paragraph at lines 215--215 [] @texttt void dis_entry_assembly (SetOp my_set_op) { return base::d ata().dis_entry_assembly (my_set_op); }[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 217--217 [] @texttt void dis_entry_assembly_begin (SetOp my_set_op) { return base::d ata().dis_entry_assembly_begin (my_set_op); }[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 219--219 [] @texttt void dis_entry_assembly_end (SetOp my_set_op) { return base::d ata().dis_entry_assembly_end (my_set_op); }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 224--224 [] @texttt void repartition ( // old_numbering for *this[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 226--226 [] @texttt hack_array& new_array, // new_owne rship (created)[] Overfull \hbox (313.87352pt too wide) in paragraph at lines 229--229 [] @texttt { return base::data().repartition (partition.data(), new_arr ay.data(), old_numbering.data(), new_numbering.data()); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 233--233 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 235--235 [] @texttt hack_array& new_array) const // new_owner ship (already allocated)[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 236--236 [] @texttt { base::data().permutation_apply (new_numbering.data(), new_ array.data()); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 238--238 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 239--239 [] @texttt hack_array& inew2dis_iold) const // new_ownership[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 245--245 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 246--246 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 248--248 [] @texttt void dump (std::string name) const { return base::data().du mp(name); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 255--255 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 263--263 [] @texttt { return base::data().permuted_put_values (ops, perm.da ta(), put_element); }[] [155]) (../../nfem/geo_element/hexahedron.7texi [156]) (../../nfem/geo_element/point.7texi [157]) (../../nfem/geo_element/prism.7texi [158]) (../../nfem/geo_element/quadrangle.7texi [159]) (../../nfem/geo_element/quadrature.7texi [160] Overfull \hbox (20.69044pt too wide) in paragraph at lines 65--65 [] @texttt family_type get_family() const { return base::data().get_fami ly();}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 66--66 [] @texttt std::string get_family_name() const { return base::data().get _family_name();}[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 67--67 [] @texttt const quadrature_option_type& get_options() const { return base: :data().get_options(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 68--68 [] @texttt size_type size (reference_element hat_K) const { return ba se::data().size(hat_K); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 69--69 [] @texttt const_iterator begin (reference_element hat_K) const { return ba se::data().begin(hat_K); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 70--70 [] @texttt const_iterator end (reference_element hat_K) const { return ba se::data().end(hat_K); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 71--71 [] @texttt const weighted_point& operator() (reference_element hat_K, si ze_type q) const[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 72--72 [] @texttt { return ba se::data().operator() (hat_K,q); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 74--74 [] @texttt friend std::ostream& operator<< (std::ostream& os, const quadrat ure& q) {[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [] @texttt base::data().side_initialize (tilde_K, loc_isid, hat_S, shift, orient);[] [161]) (../../nfem/geo_element/reference_element.7texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 58--58 [] @texttt : _x(x) { assert_macro (x >= 0 && x <= max_variant, "invalid t ype " << x); }[] [162] Overfull \hbox (112.66945pt too wide) in paragraph at lines 63--63 [] @texttt void set_variant (size_type n_vertex, size_type dim) { _x = vari ant (n_vertex, dim); }[] Overfull \hbox (141.41289pt too wide) in paragraph at lines 72--72 [] @texttt size_type n_subgeo(size_type subgeo_dim) const { return n_subgeo (variant(), subgeo_dim); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 75--75 [] @texttt size_type subgeo_size (size_type subgeo_dim, size_type loc_isid) const {[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 77--77 [] @texttt size_type subgeo_local_vertex(size_type subgeo_dim, size_type lo c_isid, size_type loc_jsidvert) const {[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 78--78 [] @texttt return subgeo_local_node (_x, 1, subgeo_dim, loc_isid, loc_j sidvert); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 84--84 [] @texttt void side_normal (size_type loc_isid, point_basic& hat_n) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 90--90 [] @texttt static char name (variant_type variant) { return _na me [variant]; }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 91--91 [] @texttt static size_type dimension (variant_type variant) { return _di mension[variant]; }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 92--92 [] @texttt static size_type n_vertex (variant_type variant) { return _n_ vertex [variant]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 93--93 [] @texttt static size_type n_node (variant_type variant, size_type or der);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 97--97 [] @texttt static size_type n_subgeo (variant_type variant, size_type subgeo_dim);[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 98--98 [] @texttt static size_type subgeo_n_node (variant_type variant, size_type order, size_type subgeo_dim, size_type loc_isid);[] Overfull \hbox (423.09859pt too wide) in paragraph at lines 99--99 [] @texttt static size_type subgeo_local_node (variant_type variant, size_t ype order, size_type subgeo_dim, size_type loc_isid, size_type loc_jsidnod);[] Overfull \hbox (239.14058pt too wide) in paragraph at lines 106--106 [] @texttt static size_type first_inod_by_variant (variant_type variant, si ze_type order, variant_type subgeo_variant);[] [163] Overfull \hbox (233.39189pt too wide) in paragraph at lines 107--107 [] @texttt static size_type last_inod_by_variant (variant_type variant, si ze_type order, variant_type subgeo_variant)[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 108--108 [] @texttt { return first_inod_by_variant (variant, order, subgeo_varian t+1); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 109--109 [] @texttt static size_type first_inod (variant_type variant, size_type ord er, size_type subgeo_dim)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 110--110 [] @texttt { return first_inod_by_variant (variant, order, first_variant _by_dimension(subgeo_dim)); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 111--111 [] @texttt static size_type last_inod (variant_type variant, size_type ord er, size_type subgeo_dim)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 112--112 [] @texttt { return first_inod_by_variant (variant, order, last_variant _by_dimension(subgeo_dim)); }[] Overfull \hbox (382.85777pt too wide) in paragraph at lines 113--113 [] @texttt static void init_local_nnode_by_variant (size_type order, std::a rray& loc_nnod_by_variant);[] ) (../../nfem/geo_element/tetrahedron.7texi [164] [165]) (../../nfem/geo_element/triangle.7texi [166]) (../../skit/plib2/index_set.7texi [167] Overfull \hbox (89.6747pt too wide) in paragraph at lines 41--41 [] @texttt friend void set_union (const index_set& a, const index_set& b, index_set& c);[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 42--42 [] @texttt friend void set_intersection (const index_set& a, const index_set& b, index_set& c);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 47--47 [] @texttt friend std::ostream& operator<< (std::ostream& os, const index_set & x);[] ) (../../skit/plib2/pair_set.7texi Overfull \hbox (32.18782pt too wide) in paragraph at lines 16--16 []@texttt class pair_set: public std::map, A> {[] [168] Overfull \hbox (14.94176pt too wide) in paragraph at lines 40--40 [] @texttt pair_set& operator+= (const pair_type& x); // c := a unio n {x}[] ) (../../util/lib/Vector.7texi [169] [170] Overfull \hbox (49.43388pt too wide) in paragraph at lines 101--101 [] @texttt void insert (iterator position, const_iterator first, const_iter ator last);[] ) (../../util/lib/heap_allocator.7texi Overfull \hbox (147.16158pt too wide) in paragraph at lines 20--20 [] @texttt typedef map , heap_allocator > > map_type;[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 24--24 [] @texttt for (map_type::iterator iter = a.begin(), last = a.end(); iter ! = last; iter++) {[] [171] Overfull \hbox (14.94176pt too wide) in paragraph at lines 60--60 [] @texttt : handler ((typename heap_allocator::handler_type*)(ha.hand ler))[] [172] Overfull \hbox (129.91551pt too wide) in paragraph at lines 88--88 [] @texttt size_type max_size() const { return std::numeric_limits::max() / sizeof(T); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 97--97 [] @texttt // C++ 2011: default construct a value of type T at the location referenced by p[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 98--98 [] @texttt void construct (pointer p) { new ( reinterpret_cast(p) ) T(); }[] ) (../../util/lib/smart_pointer.7texi [173] Overfull \hbox (60.93126pt too wide) in paragraph at lines 81--81 [] @texttt Pour mieux developper avec C++ : design pattern, STL, RTTI et sm art pointers,[] [174] Overfull \hbox (14.94176pt too wide) in paragraph at lines 83--83 [] @texttt [2] STLplus, http://stlplus.sourceforge.net/stlplus3/docs/smart_ptr .html[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 126--126 [] @texttt int reference_counter() const { return _count != 0 ? _count->_n : -1; }[] ) (../../util/lib/stack_allocator.7texi [175] Overfull \hbox (35.10944pt too wide) in paragraph at lines 16--19 @textrm ex-cep-tion is em-mited. For a non-limited mem-ory han-dler in the same spirit, see @texttt "@textrm heap[]allocator@texttt "@textrm (9). Overfull \hbox (72.42863pt too wide) in paragraph at lines 24--24 [] @texttt stack_allocator stack_alloc (stack.begin().operator->(), stack.size());[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 25--25 [] @texttt typedef map , stack_allocator > > map_type;[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 29--29 [] @texttt for (map_type::iterator iter = a.begin(), last = a.end(); iter ! = last; iter++) {[] [176] Overfull \hbox (20.69044pt too wide) in paragraph at lines 70--70 [] @texttt : handler ((typename stack_allocator::handler_type*)(sa.han dler))[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 99--99 [] @texttt size_type max_size() const { return std::numeric_limits::max() / sizeof(T); }[] [177] Overfull \hbox (78.17732pt too wide) in paragraph at lines 108--108 [] @texttt // C++ 2011: default construct a value of type T at the location referenced by p[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 109--109 [] @texttt void construct (pointer p) { new ( reinterpret_cast(p) ) T(); }[] [178] Overfull \hbox (32.18782pt too wide) in paragraph at lines 164--164 [] @texttt trace_macro ("stack_allocator::mem_info cstori: size="<>/doc/refman/FAQ.texi Chapter 10 [194] Overfull \hbox (10.36597pt too wide) in paragraph at lines 77--82 []@textrm the au-to-mat-i-cally gen-er-ated script, scan the ma-chine and tran s-late `@texttt config.h.in[]@textrm '[], [195] [196]) (/<>/doc/refman/gpl.texi Appendix @char @appendixno [197] [198] Underfull \hbox (badness 2368) in paragraph at lines 63--63 []@secrm TERMS AND CON-DI-TIONS FOR COPY-ING, [199] [200] [201] [202] [203] [204]) (Concept Index) [205] [206] (Program Index) [207] [208] (Class Index) [209] [210] (Approximation Index) [211] [212] (Function Index) [213] [214] (File Format Index) [215] [216] (Related Tool Index) [217] [218] [219] [220] (/<>/doc/refman/rheolef-refman.toc) [-1] [-2] (/<>/doc/refman/rheolef-refman.toc [-3] [-4] [-5]) [-6] ) (see the transcript file for additional information) Output written on rheolef-refman.dvi (228 pages, 495816 bytes). Transcript written on rheolef-refman.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=etex) restricted \write18 enabled. entering extended mode (././rheolef-refman.texi (/<>/doc/refman/texinfo.tex Loading texinfo [version 1999-03-26.17]: Basics, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, localization, and turning on texinfo input format.) (/<>/doc/refman/rheolef-refman.aux) (/<>/doc/refman/myversion.texi) [1] [2] Chapter 1 (/<>/doc/refman/introduction.texi) (/<>/doc/refman/INSTALL.texi Chapter 2 [1] [2] Overfull \hbox (55.18257pt too wide) in paragraph at lines 54--54 [] @texttt firefox http://ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef -refman.html[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 70--70 [] @texttt firefox http://ljk.imag.fr/membres/Pierre.Saramito/rheolef/source_ html/[] [3] [4] [5] Overfull \hbox (55.18257pt too wide) in paragraph at lines 311--311 [] @texttt CXX=icpc CXXFLAGS=-I/usr/local/include LIBS="-L/usr/local/lib -lz" ./configure[] Overfull \hbox (1.0965pt too wide) in paragraph at lines 362--364 []@textrm Set the home di-rec-tory for the @texttt cln[] @textrm li-brary. De- fault @textsl dir[]cln @textrm is `@texttt /usr/local/math[]@textrm '[]. [6] Overfull \hbox (31.82034pt too wide) in paragraph at lines 420--426 @textsl dir[]parmetis @textrm for @texttt libparmetis.so[]@textrm , @texttt li bparmetis.a[] @textrm and also @texttt libmetis.a[] libmetis.so[]@textrm . Overfull \hbox (44.75717pt too wide) in paragraph at lines 438--444 []@textrm Turns on/off the @texttt scalapack[] @textrm li-braries. Check in @t extsl rheo[]libs[]scalapack @textrm for @texttt libscalapack.so[]@textrm , Overfull \hbox (16.5128pt too wide) in paragraph at lines 448--453 []@textrm Turns on/off the @texttt mumps[] @textrm dis-tributed solver. Check in @textsl lib-dir[]mumps @textrm for @texttt libmumps.so[]@textrm , Overfull \hbox (22.83936pt too wide) in paragraph at lines 464--468 []@textrm Turns on/off the @texttt pastix[] @textrm dis-tributed solver. Check in @textsl lib-dir[]pastix @textrm for @texttt libpastix.so[]@textrm , [7] Overfull \hbox (10.56544pt too wide) in paragraph at lines 475--480 @textrm and for header @textsl in-cdir[]cholmod@textrm /cholmod.h or @textsl i n-cdir[]cholmod@textrm /cholmod/cholmod.h. Overfull \hbox (83.97032pt too wide) in paragraph at lines 487--492 @texttt libumfpack.a[] @textrm and for header @textsl in-cdir[]umfpack@textrm /umfpack.h or @textsl in-cdir[]umfpack@textrm /umfpack/umfpack.h. [8]) Chapter 3 [9] [10] (/<>/doc/refman/includes.texi Chapter 4 [11] [12] (../../nfem/pbin/branch.1texi [13] [14]) (../../nfem/pbin/field.1texi [15] [16] [17] [18] Overfull \hbox (66.67995pt too wide) in paragraph at lines 288--288 [] @texttt field cube.field -cut -normal 0 1 0 -origin 0.5 0.5 0.5 -text > cube-cut.field[] [19]) (../../nfem/pbin/geo.1texi [20] [21] [22]) (../../nfem/pbin/msh2geo.1texi [23] Overfull \hbox (26.43913pt too wide) in paragraph at lines 57--57 [] @texttt i.e., the numbering follows that of the nodes of an embedded face/ volume.[] [24]) (../../nfem/sbin/bamg2geo.1texi [25]) (../../nfem/sbin/mkgeo_ball.1texi [26] Overfull \hbox (16.24315pt too wide) in paragraph at lines 63--67 @textrm The ge-om-e-try can be el-lipse/ellipsoid in-scribted in the [a,b]x[c,d ] rect-an-gle or the [a,b]x[c,d]x[f,g] [27]) (../../nfem/sbin/mkgeo_grid.1texi [28] Overfull \hbox (1.14882pt too wide) in paragraph at lines 79--82 @texttt -nosides[]@textrm The bound-ary sides are rep-resentd by do-mains: @te xttt left[]@textrm , @texttt right[]@textrm , @texttt top[]@textrm , @texttt bo ttom[]@textrm ,@texttt front[] [29]) (../../nfem/sbin/mkgeo_ugrid.1texi [30] Overfull \hbox (1.14882pt too wide) in paragraph at lines 98--101 @texttt -nosides[]@textrm The bound-ary sides are rep-resentd by do-mains: @te xttt left[]@textrm , @texttt right[]@textrm , @texttt top[]@textrm , @texttt bo ttom[]@textrm ,@texttt front[] [31]) (../../util/bamg/bamg.1texi [32] [33] [34] Overfull \hbox (32.18782pt too wide) in paragraph at lines 149--149 [] @texttt bamg -b toto_old.bamg -rbb toto_old.bb -r toto_new.bamg -obb tot o_new.bb[] [35] [36] [37] [38] [39] Overfull \hbox (68.45793pt too wide) in paragraph at lines 429--431 []@textrm Frederic Hecht @texttt <@textrm Fred-eric.Hecht@texttt @@textrm inria .fr@texttt > @textrm is the au-thor of bamg. Pierre Saramito @texttt <@textrm P ierre.Saramito@texttt @@textrm imag.fr@texttt > [40]) (../../config/rheolef-config.1texi Overfull \hbox (19.55571pt too wide) in paragraph at lines 433--2 []@textrm The orig-i-nal site of the bamg mesh gen-er-a-tor is @texttt http://w ww.ann.jussieu.fr/hecht/ftp/bamg[]@textrm . [41]) Chapter 5 [42] (../../nfem/plib/band.2texi Overfull \hbox (89.6747pt too wide) in paragraph at lines 57--57 [] @texttt size_type sid_ie2bnd_ie (size_type sid_ie) const { return _sid_ie2 bnd_ie [sid_ie]; }[] [43]) (../../nfem/plib/branch.2texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 37--37 []@texttt class branch_basic : public std::vector > > {[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt typedef std::vector > > base;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 42--42 [] @texttt typedef typename base::size_type size_type;[] [44] Overfull \hbox (20.69044pt too wide) in paragraph at lines 53--53 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 54--54 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 55--55 [] @texttt const std::string & u1);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 56--56 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 57--57 [] @texttt const std::string & u1,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 58--58 [] @texttt const std::string & u2);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 79--79 [] @texttt __obranch operator() (const T& t, const field_basic& u 0, Args... uk);[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 81--81 [] @texttt __iobranch operator() (T& t, field_basic& u 0, Args&... uk);[] [45]) (../../nfem/plib/characteristic.2texi [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 61--61 []@texttt class characteristic_basic : public smart_pointer > {[] ) (../../nfem/plib/field.2texi [47] [48] Overfull \hbox (67.46213pt too wide) in paragraph at lines 108--111 []@textrm The space as-so-ci-ated to the trace writes @texttt wh.get_space()[] @textrm and is equiv-a-lent to @texttt space(omega["boundary"], [49] Overfull \hbox (59.90681pt too wide) in paragraph at lines 154--161 @texttt d=omega.dimension()[]@textrm . A tensor-valued field has @texttt d*(d+1 )/2[] @textrm com-po-nents, where @texttt d=omega.dimension()[]@textrm . Overfull \hbox (147.16158pt too wide) in paragraph at lines 201--201 []@texttt class field_basic : public std::unary_function::type>,T> {[] [50] Overfull \hbox (43.6852pt too wide) in paragraph at lines 247--247 [] @texttt details::is_field_expr_v2_linear_arg::value[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 254--254 [] @texttt details::is_field_expr_v2_linear_arg::value[] [51] Overfull \hbox (72.42863pt too wide) in paragraph at lines 262--262 [] @texttt field_basic (const std::initializer_list >& init_list);[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 263--263 [] @texttt field_basic& operator= (const std::initializer_list >& init_list);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 279--279 [] @texttt vec& set_u() { dis_dof_indexes_requires_update( ); return _u; }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 280--280 [] @texttt vec& set_b() { dis_dof_indexes_requires_update( ); return _b; }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 292--292 [] @texttt field_indirect_const operator[] (const geo_basic& dom ) const;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 301--301 [] @texttt field_component operator() (size_type i_comp, size_ty pe j_comp);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 302--302 [] @texttt field_component_const operator() (size_type i_comp, size_ty pe j_comp) const;[] [52] Overfull \hbox (32.18782pt too wide) in paragraph at lines 306--306 [] @texttt const distributor& ownership() const { return get_space().owners hip(); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 329--329 [] @texttt T dis_evaluate (const point_basic& x, size_type i_comp = 0) c onst;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 330--330 [] @texttt T operator() (const point_basic& x) const { return dis_eval uate (x,0); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 338--338 [] @texttt T evaluate (const geo_element& K, const point_basic& hat_xq, size_type i_comp = 0) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 340--340 [] @texttt // propagate changed values shared at partition boundaries to ot hers procs[] [53]) (../../nfem/plib/field_functor.2texi [54] Overfull \hbox (55.18257pt too wide) in paragraph at lines 52--52 [] @texttt const Function& get_ref() const { return static_cast(*this); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 54--54 [] @texttt Result operator() (const point& x) const { return get_ref().operato r()(x); }[] ) (../../nfem/plib/form.2texi [55] [56] Overfull \hbox (60.93126pt too wide) in paragraph at lines 100--100 [] @texttt form_basic (const std::initializer_list > & init_list);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 101--101 [] @texttt form_basic (const std::initializer_list > & init_list);[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 120--120 [] @texttt float_type operator () (const field_basic& uh, const field_ basic& vh) const;[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 124--124 [] @texttt odiststream& put (odiststream& ops, bool show_partition = true) const;[] [57] [58] Overfull \hbox (152.91026pt too wide) in paragraph at lines 218--218 [] @texttt const geo_basic& w_omega, // the domain wh ere the fct weight is defined[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 221--221 []@texttt template form_basic trans (const form_basic& a);[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 222--222 []@texttt template field_basic diag (const form_basic& a);[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 223--223 []@texttt template form_basic diag (const field_basic< T,M>& dh);[] ) (../../nfem/plib/form_option_type.2texi [59]) (../../nfem/plib/functor.2texi [60]) (../../nfem/plib/geo.2texi [61] Overfull \hbox (129.91551pt too wide) in paragraph at lines 10--10 []@texttt class geo_basic : public smart_pointer_clone > {[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 27--27 [] @texttt typedef typename rep::const_iterator_by_variant const_iterator_b y_variant;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 33--33 [] @texttt geo_basic (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 34--34 [] @texttt void load (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 35--35 [] @texttt geo_basic (const domain_indirect_basic& dom, const g eo_basic& omega);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 41--41 [] @texttt const std::array >,sequential>,[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 47--47 [] @texttt std::string name() const { return base::data( ).name(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 48--48 [] @texttt std::string familyname() const { return base::data( ).familyname(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 49--49 [] @texttt size_type dimension() const { return base::data( ).dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 50--50 [] @texttt size_type map_dimension() const { return base::data( ).map_dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 51--51 [] @texttt size_type serial_number() const { return base::data( ).serial_number(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 52--52 [] @texttt size_type variant() const { return base::data( ).variant(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 53--53 [] @texttt coordinate_type coordinate_system() const { return base::data( ).coordinate_system(); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 54--54 [] @texttt std::string coordinate_system_name() const { return space_const ant::coordinate_system_name(coordinate_system()); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 55--55 [] @texttt const basis_basic& get_piola_basis() const { return base::dat a().get_piola_basis(); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 56--56 [] @texttt size_type order() const { return base::data( ).get_piola_basis().degree(); }[] [62] Overfull \hbox (49.43388pt too wide) in paragraph at lines 57--57 [] @texttt const node_type& xmin() const { return base::data( ).xmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 58--58 [] @texttt const node_type& xmax() const { return base::data( ).xmax(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 59--59 [] @texttt const T& hmin() const { return base::data( ).hmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 60--60 [] @texttt const T& hmax() const { return base::data( ).hmax(); }[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 61--61 [] @texttt const distributor& geo_element_ownership(size_type dim) const { return base::data().geo_element_ownership(dim); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 62--62 [] @texttt const geo_size& sizes() const { return base::da ta().sizes(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 63--63 [] @texttt const geo_size& ios_sizes() const { return base::da ta().ios_sizes(); }[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 64--64 [] @texttt const_reference get_geo_element (size_type dim, size_type ige) c onst { return base::data().get_geo_element (dim, ige); }[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 65--65 [] @texttt reference get_geo_element (size_type dim, size_type ige) { return base::data().get_geo_element (dim, ige); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 66--66 [] @texttt const_reference dis_get_geo_element (size_type dim, size_type di s_ige) const[] Overfull \hbox (331.11958pt too wide) in paragraph at lines 68--68 [] @texttt const geo_element& bgd2dom_geo_element (const geo_element& bgd_K ) const { return base::data().bgd2dom_geo_element (bgd_K); }[] Overfull \hbox (331.11958pt too wide) in paragraph at lines 69--69 [] @texttt const geo_element& dom2bgd_geo_element (const geo_element& dom_K ) const { return base::data().dom2bgd_geo_element (dom_K); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 71--71 [] @texttt return base::data().neighbour (ie, loc_isi d); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 74--74 [] @texttt const node_type& node(size_type inod) const { return bas e::data().node(inod); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 75--75 [] @texttt const node_type& dis_node(size_type dis_inod) const { return bas e::data().dis_node(dis_inod); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 76--76 [] @texttt void dis_inod (const geo_element& K, std::vector& dis _inod) const {[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 78--78 [] @texttt node_type piola (const geo_element& K, const node_type& hat_x) c onst { return base::data().piola (K, hat_x); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 79--79 [] @texttt const disarray& get_nodes() const { return base::data().get_nodes(); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 80--80 [] @texttt size_type dis_inod2dis_iv (size_type dis_inod) const { return ba se::data().dis_inod2dis_iv(dis_inod); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 82--82 [] @texttt size_type n_domain_indirect () const { return base::data().n_dom ain_indirect (); }[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 83--83 [] @texttt bool have_domain_indirect (const std::string& name) const { retu rn base::data().have_domain_indirect (name); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 84--84 [] @texttt const domain_indirect_basic& get_domain_indirect (si ze_type i) const {[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 86--86 [] @texttt const domain_indirect_basic& get_domain_indirect (co nst std::string& name) const {[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 88--88 [] @texttt void insert_domain_indirect (const domain_indirect_basic& dom) const {[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 91--91 [] @texttt size_type n_domain () const { return base::data().n_domain_indir ect (); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 100--100 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 104--104 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] [63] Overfull \hbox (95.42339pt too wide) in paragraph at lines 114--114 [] @texttt { return base::data().seq_tr ace_move (x,v,y); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 119--119 [] @texttt { return base::data().dis_tr ace_move (x,v,y); }[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 125--125 [] @texttt { return base::data().trace_ ray_boundary (x,v,dis_ie,y); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 131--131 [] @texttt { return base::data().trace_ move (x,v,dis_ie,y); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 135--135 [] @texttt { return base::data().seq_ne arest (x, x_nearest); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 139--139 [] @texttt { return base::data().dis_ne arest (x, x_nearest); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 142--142 [] @texttt disarray,sequential>& x_nea rest,[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 143--143 [] @texttt disarray& dis_i e) const[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 144--144 [] @texttt { base::data().nearest (x, x _nearest, dis_ie); }[] Overfull \hbox (388.60646pt too wide) in paragraph at lines 153--153 [] @texttt void set_coordinate_system (std::string sys_coord_name) { set_co ordinate_system (space_constant::coordinate_system(sys_coord_name)); }[] [64] Overfull \hbox (66.67995pt too wide) in paragraph at lines 155--155 [] @texttt void build_by_subdividing (const geo_basic& omega, size_type k);[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 157--157 [] @texttt const geo_header& hdr,[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 158--158 [] @texttt const disarray& node,[] Overfull \hbox (469.08809pt too wide) in paragraph at lines 159--159 [] @texttt std::array >,sequential, heap_allocator >, reference_element::max_vari ant>&[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 160--160 [] @tex ttt tmp_geo_element,[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 165--165 [] @texttt const communicator& comm() const { return geo_element_own ership (0).comm(); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 166--166 [] @texttt size_type size(size_type dim) const { return base::data().ge o_element_ownership(dim).size(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 167--167 [] @texttt size_type dis_size(size_type dim) const { return base::data().ge o_element_ownership(dim).dis_size(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 168--168 [] @texttt size_type size() const { return size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 169--169 [] @texttt size_type dis_size() const { return dis_size (map_d imension()); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 172--172 [] @texttt const_reference operator[] (size_type ie) const { return get_geo _element (map_dimension(), ie); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 173--173 [] @texttt reference operator[] (size_type ie) { return get_geo _element (map_dimension(), ie); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 174--174 [] @texttt const_iterator begin (size_type dim) const { return base::data() .begin(dim); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 175--175 [] @texttt const_iterator end (size_type dim) const { return base::data() .end (dim); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 176--176 [] @texttt const_iterator begin () const { return begin(map_di mension()); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 177--177 [] @texttt const_iterator end () const { return end (map_di mension()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 179--179 [] @texttt const_iterator_by_variant begin_by_variant (variant_type variant ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 181--181 [] @texttt const_iterator_by_variant end_by_variant (variant_type variant ) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 184--184 [] @texttt const geo_basic& get_background_geo() const; // co de in geo_domain.h[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 189--189 [] @texttt size_type ige2ios_dis_ige (size_type dim, size_type ige) const { return ige; }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 190--190 [] @texttt size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const { return dis_ige; }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 191--191 [] @texttt size_type ios_ige2dis_ige (size_type dim, size_type ios_ige) con st { return ios_ige; }[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 195--195 [] @texttt bool operator== (const geo_basic& omega2) const { return base::data().operator== (omega2.data()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 202--202 [] @texttt void dump (std::string name) const { base::data().dump (n ame); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 203--203 [] @texttt bool check (bool verbose = true) const { return base::data().che ck(verbose); }[] [65] Overfull \hbox (141.41289pt too wide) in paragraph at lines 209--209 []@texttt class geo_basic : public smart_pointer_clone > {[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 227--227 [] @texttt typedef typename rep::const_iterator_by_variant const_iterator_b y_variant;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 233--233 [] @texttt geo_basic (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 234--234 [] @texttt void load (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 235--235 [] @texttt geo_basic (const domain_indirect_basic& dom, const geo_basic& omega);[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 240--240 [] @texttt const disarray,distributed>& node_list,[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 241--241 [] @texttt const std::array >,distributed>,[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 247--247 [] @texttt std::string name() const { return base::data( ).name(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 248--248 [] @texttt std::string familyname() const { return base::data( ).familyname(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 249--249 [] @texttt size_type dimension() const { return base::data( ).dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 250--250 [] @texttt size_type map_dimension() const { return base::data( ).map_dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 251--251 [] @texttt size_type serial_number() const { return base::data( ).serial_number(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 252--252 [] @texttt size_type variant() const { return base::data( ).variant(); }[] [66] Overfull \hbox (124.16682pt too wide) in paragraph at lines 253--253 [] @texttt coordinate_type coordinate_system() const { return base::data( ).coordinate_system(); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 254--254 [] @texttt std::string coordinate_system_name() const { return space_const ant::coordinate_system_name(coordinate_system()); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 255--255 [] @texttt const basis_basic& get_piola_basis() const { return base::dat a().get_piola_basis(); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 256--256 [] @texttt size_type order() const { return base::data( ).get_piola_basis().degree(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 257--257 [] @texttt const node_type& xmin() const { return base::data( ).xmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 258--258 [] @texttt const node_type& xmax() const { return base::data( ).xmax(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 259--259 [] @texttt const T& hmin() const { return base::data( ).hmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 260--260 [] @texttt const T& hmax() const { return base::data( ).hmax(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 262--262 [] @texttt { return base::data().geo_element_ownership (dim); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 263--263 [] @texttt const geo_size& sizes() const { return base::da ta().sizes(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 264--264 [] @texttt const geo_size& ios_sizes() const { return base::da ta().ios_sizes(); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 267--267 [] @texttt const_reference dis_get_geo_element (size_type dim, size_type di s_ige) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 268--268 [] @texttt { return base::data().dis_get_geo_element (dim, dis_ ige); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 269--269 [] @texttt const geo_element& bgd2dom_geo_element (const geo_element& bgd_K ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 271--271 [] @texttt const geo_element& dom2bgd_geo_element (const geo_element& dom_K ) const[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 274--274 [] @texttt return base::data().neighbour (ie, loc_isi d); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 280--280 [] @texttt size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const {[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 285--285 [] @texttt const node_type& node(size_type inod) const { return bas e::data().node(inod); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 286--286 [] @texttt const node_type& dis_node(size_type dis_inod) const { return bas e::data().dis_node(dis_inod); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 287--287 [] @texttt void dis_inod (const geo_element& K, std::vector& dis _inod) const {[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 289--289 [] @texttt node_type piola (const geo_element& K, const node_type& hat_x) c onst { return base::data().piola (K, hat_x); }[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 290--290 [] @texttt const disarray& get_nodes() const { retur n base::data().get_nodes(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 292--292 [] @texttt size_type n_domain_indirect () const { return base::data().n_dom ain_indirect (); }[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 293--293 [] @texttt bool have_domain_indirect (const std::string& name) const { retu rn base::data().have_domain_indirect (name); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 294--294 [] @texttt const domain_indirect_basic& get_domain_indirect (s ize_type i) const {[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 296--296 [] @texttt const domain_indirect_basic& get_domain_indirect (c onst std::string& name) const {[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 298--298 [] @texttt void insert_domain_indirect (const domain_indirect_basic& dom) const {[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 301--301 [] @texttt size_type n_domain () const { return base::data().n_domain_indir ect (); }[] [67] Overfull \hbox (83.92601pt too wide) in paragraph at lines 310--310 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 314--314 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (239.14058pt too wide) in paragraph at lines 316--316 [] @texttt void locate (const disarray, distributed>& x, dis array& dis_ie) const[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 322--322 [] @texttt { return base::data().seq_tr ace_move (x,v,y); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 327--327 [] @texttt { return base::data().dis_tr ace_move (x,v,y); }[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 333--333 [] @texttt { return base::data().trace_ ray_boundary (x,v,dis_ie,y); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 339--339 [] @texttt { return base::data().trace_ move (x,v,dis_ie,y); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 343--343 [] @texttt { return base::data().seq_ne arest (x, x_nearest); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 347--347 [] @texttt { return base::data().dis_ne arest (x, x_nearest); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 350--350 [] @texttt disarray,distributed>& x_ne arest,[] [68] Overfull \hbox (37.93651pt too wide) in paragraph at lines 351--351 [] @texttt disarray& dis_ ie) const[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 352--352 [] @texttt { base::data().nearest (x, x _nearest, dis_ie); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 357--357 [] @texttt size_type dis_inod2dis_iv (size_type dis_inod) const { return ba se::data().dis_inod2dis_iv(dis_inod); }[] Overfull \hbox (388.60646pt too wide) in paragraph at lines 359--359 [] @texttt void set_coordinate_system (std::string sys_coord_name) { set_co ordinate_system (space_constant::coordinate_system(sys_coord_name)); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 363--363 [] @texttt void build_by_subdividing (const geo_basic& omega , size_type k);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 367--367 [] @texttt size_type size(size_type dim) const { return base::data().ge o_element_ownership(dim).size(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 368--368 [] @texttt size_type dis_size(size_type dim) const { return base::data().ge o_element_ownership(dim).dis_size(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 369--369 [] @texttt const communicator& comm() const { return geo_element_own ership (0).comm(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 370--370 [] @texttt size_type size() const { return size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 371--371 [] @texttt size_type dis_size() const { return dis_size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 377--377 [] @texttt const_iterator begin (size_type dim) const { return base::data() .begin(dim); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 378--378 [] @texttt const_iterator end (size_type dim) const { return base::data() .end (dim); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 379--379 [] @texttt const_iterator begin () const { return begin(map_di mension()); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 380--380 [] @texttt const_iterator end () const { return end (map_di mension()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 382--382 [] @texttt const_iterator_by_variant begin_by_variant (variant_type variant ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 384--384 [] @texttt const_iterator_by_variant end_by_variant (variant_type variant ) const[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 387--387 [] @texttt const geo_basic& get_background_geo() const; // c ode in geo_domain.h[] Overfull \hbox (273.6327pt too wide) in paragraph at lines 392--392 [] @texttt bool operator== (const geo_basic& omega2) const { return base::data().operator== (omega2.data()); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 396--396 [] @texttt odiststream& put (odiststream& ops) const { return base::data(). put (ops); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 399--399 [] @texttt bool check (bool verbose = true) const { return base::data().che ck(verbose); }[] [69] Overfull \hbox (66.67995pt too wide) in paragraph at lines 404--404 [] @texttt std::array& loc_nd of_by_variant,[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 405--405 [] @texttt disarray& idof2i os_dis_idof) const[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 406--406 [] @texttt { base::data().set_ios_permutation (loc_ndof_by_variant, idof2i os_dis_idof); }[] ) (../../nfem/plib/space.2texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 28--28 []@texttt class space_basic : public smart_pointer > {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 40--40 [] @texttt space_basic (const geo_basic& omega = (geo_basic()),[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt std::string approx = "", std::string valued = "sca lar");[] [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 63--63 [] @texttt space_component_const operator[] (size_type i_comp ) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 69--69 [] @texttt void dis_idof (const geo_element& K, std::vector& dis _idof) const;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 90--90 [] @texttt point_basic vector_momentum (const Function& f, size_type ido f) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [] @texttt tensor_basic tensor_momentum (const Function& f, size_type id of) const;[] [71] Overfull \hbox (55.18257pt too wide) in paragraph at lines 96--96 [] @texttt const space_basic& Wh, const std::string& dom_ name) const;[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 99--99 [] @texttt const space_basic& Wh, const geo_basic& bgd_gamma) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 101--101 [] @texttt const std::set& ext_iu_set() const { return base::dat a().ext_iu_set(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 102--102 [] @texttt const std::set& ext_ib_set() const { return base::dat a().ext_ib_set(); }[] Overfull \hbox (227.6432pt too wide) in paragraph at lines 106--106 [] @texttt bool operator== (const space_basic& V2) const { re turn base::data().operator==(V2.data()); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 107--107 [] @texttt bool operator!= (const space_basic& V2) const { re turn ! operator== (V2); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 108--108 [] @texttt friend bool are_compatible (const space_basic& V1, const space_basic& V2) {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 115--115 []@texttt class space_basic : public smart_pointer > {[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 127--127 [] @texttt space_basic (const geo_basic& omega = (geo_basic< T,distributed>()),[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 128--128 [] @texttt std::string approx = "", std::string valued = "sca lar");[] [72] Overfull \hbox (37.93651pt too wide) in paragraph at lines 150--150 [] @texttt space_component_const operator[] (size_type i_com p) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 156--156 [] @texttt void dis_idof (const geo_element& K, std::vector& dis _idof) const;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 178--178 [] @texttt point_basic vector_momentum (const Function& f, size_type ido f) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 181--181 [] @texttt tensor_basic tensor_momentum (const Function& f, size_type id of) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 184--184 [] @texttt const space_basic& Wh, const std::string& dom _name) const;[] Overfull \hbox (141.41289pt too wide) in paragraph at lines 187--187 [] @texttt const space_basic& Wh, const geo_basic& bgd_gamma) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 189--189 [] @texttt const std::set& ext_iu_set() const { return base::dat a().ext_iu_set(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 190--190 [] @texttt const std::set& ext_ib_set() const { return base::dat a().ext_ib_set(); }[] [73] Overfull \hbox (233.39189pt too wide) in paragraph at lines 194--194 [] @texttt bool operator== (const space_basic& V2) const { r eturn base::data().operator==(V2.data()); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 195--195 [] @texttt bool operator!= (const space_basic& V2) const { r eturn ! operator== (V2); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 196--196 [] @texttt friend bool are_compatible (const space_basic& V1 , const space_basic& V2) {[] ) (../../nfem/plib/test.2texi) (../../nfem/geo_element/point.2texi [74] Overfull \hbox (32.18782pt too wide) in paragraph at lines 27--27 [] @texttt explicit point_basic () { _x[0] = T(); _x[1] = T(); _x[2] = T(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 41--41 [] @texttt { _x[0] = p._x[0]; _x[1] = p._x[1]; _x[2] = p._x[2]; return *this; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 49--49 [] @texttt T& operator[](int i_coord) { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 50--50 [] @texttt const T& operator[](int i_coord) const { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 51--51 [] @texttt T& operator()(int i_coord) { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 52--52 [] @texttt const T& operator()(int i_coord) const { return _x[i_coord% 3]; }[] [75] Overfull \hbox (26.43913pt too wide) in paragraph at lines 79--79 [] @texttt { return _x[0] == v[0] && _x[1] == v[1] && _x[2] == v[2]; }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 85--85 [] @texttt { _x[0] += v[0]; _x[1] += v[1]; _x[2] += v[2]; retur n *this; }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 88--88 [] @texttt { _x[0] -= v[0]; _x[1] -= v[1]; _x[2] -= v[2]; retur n *this; }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 97--97 [] @texttt { return point_basic (_x[0]+v[0], _x[1]+v[1], _x[ 2]+v[2]); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 103--103 [] @texttt { return point_basic (_x[0]-v[0], _x[1]-v[1], _x[ 2]-v[2]); }[] [76] Overfull \hbox (49.43388pt too wide) in paragraph at lines 116--116 [] @texttt { return point_basic (_x[0]/v[0], _x[1]/v[1], _x[ 2]/v[2]); }[] [77] Overfull \hbox (72.42863pt too wide) in paragraph at lines 191--191 []@texttt T mixt (const point_basic& u, const point_basic& v, const poin t_basic& w);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 193--193 []@texttt // robust(exact) floating point predicates: return the sign of the v alue as (0, > 0, < 0)[] [78] Overfull \hbox (14.94176pt too wide) in paragraph at lines 231--231 []@texttt lexicographically_less (const point_basic& a, const point_basic& b)[] ) (../../nfem/geo_element/quadrature_option_type.2texi [79] Overfull \hbox (14.94176pt too wide) in paragraph at lines 49--49 [] @texttt quadrature_option_type& operator= (const quadrature_option_type& q opt);[] ) (../../nfem/geo_element/tensor.2texi [80] Overfull \hbox (66.67995pt too wide) in paragraph at lines 34--34 [] @texttt tensor_basic (const std::initializer_list >& il);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [] @texttt void set_row (const point_basic& r, size_t i, size_t d = 3);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 47--47 [] @texttt void set_column (const point_basic& c, size_t j, size_t d = 3);[] [81] Overfull \hbox (83.92601pt too wide) in paragraph at lines 66--66 [] @texttt bool operator!= (const tensor_basic& b) const { return ! operator== (b); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 85--85 [] @texttt // where q=(q1,q2,q3) are eigenvectors in rows (othonormal m atrix)[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 86--86 [] @texttt // and d=(d1,d2,d3) are eigenvalues, sorted in decreasing order d1 >= d2 >= d3[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 94--94 [] @texttt // where u=(u1,u2,u3) are left pseudo-eigenvectors in rows ( othonormal matrix)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 95--95 [] @texttt // v=(v1,v2,v3) are right pseudo-eigenvectors in rows (othonormal matrix)[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 96--96 [] @texttt // and s=(s1,s2,s3) are eigenvalues, sorted in decreasing order s1 >= s2 >= s3[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 98--98 [] @texttt point_basic svd (tensor_basic& u, tensor_basic& v, size_t dim = 3) const;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 108--108 []@texttt point_basic operator* (const point_basic& yt, const tensor_ba sic& a);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 112--112 []@texttt void prod (const tensor_basic& a, const tensor_basic& b, tenso r_basic& result,[] [82] Overfull \hbox (89.6747pt too wide) in paragraph at lines 121--121 []@texttt tensor_basic otimes (const point_basic& u, const point_basic& v, size_t d=3);[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 152--152 []@texttt void cumul_otimes (tensor_basic& t, const point_basic& a, cons t point_basic& b, size_t na = 3);[] Overfull \hbox (233.39189pt too wide) in paragraph at lines 154--154 []@texttt void cumul_otimes (tensor_basic& t, const point_basic& a, cons t point_basic& b, size_t na, size_t nb);[] ) (../../nfem/geo_element/tensor3.2texi [83] Overfull \hbox (14.94176pt too wide) in paragraph at lines 39--39 [] @texttt tensor3_basic& operator/= (const T& k) { return operator*= (1./ k); }[] ) (../../nfem/geo_element/tensor4.2texi [84] Overfull \hbox (14.94176pt too wide) in paragraph at lines 30--30 [] @texttt tensor4_basic (const std::initializer_list > > >& il);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt T& operator()(size_type i, size_type j, size_type k, size_ty pe l);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 42--42 [] @texttt const T& operator()(size_type i, size_type j, size_type k, size_ty pe l) const;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 50--50 [] @texttt tensor4_basic& operator/= (const T& k) { return operator*= (1./ k); }[] [85]) (../../skit/plib2/asr.2texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 14--14 []@texttt template >[] [86] Overfull \hbox (37.93651pt too wide) in paragraph at lines 25--25 [] @texttt dis_reference (typename base::dis_reference row_dis_i, size_ty pe dis_j)[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 39--39 [] @texttt : base(distributor(), row_type(alloc), alloc), _col_ownership( ), _nnz(0), _dis_nnz(0) {}[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 41--41 [] @texttt asr (const distributor& row_ownership, const distributor& col_ow nership, const A& alloc = A())[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 42--42 [] @texttt : base(row_ownership, row_type(alloc), alloc), _col_ownership( col_ownership), _nnz(0), _dis_nnz(0) {}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 48--48 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 66--66 [] @texttt const distributor& row_ownership() const { return base::ownershi p(); }[] [87] Overfull \hbox (66.67995pt too wide) in paragraph at lines 75--75 [] @texttt // dis_entry_assembly_end is redefined in order to recompute _nn z and _dis_nnz[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 76--76 [] @texttt void dis_entry_assembly_begin() { base::dis_entry_assembly_begin (pair_set_add_op()); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 77--77 [] @texttt void dis_entry_assembly_end() { base::dis_entry_assembly_end (pair_set_add_op()); _recompute_nnz(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 78--78 [] @texttt void dis_entry_assembly() { dis_entry_assembly_begin(); di s_entry_assembly_end(); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 86--86 [] @texttt odiststream& put_seq (odiststream& ops, size_type first_dis_i = 0) const;[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 87--87 [] @texttt odiststream& put_seq_sparse_matlab (odiststream& ops, size_type first_dis_i = 0) const;[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 88--88 [] @texttt odiststream& put_seq_matrix_market (odiststream& ops, size_type first_dis_i = 0) const;[] ) (../../skit/plib2/csr.2texi [88] Overfull \hbox (26.43913pt too wide) in paragraph at lines 46--46 [] @texttt explicit csr(const asr& a) : base(new_macro(rep( a))) {}[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 47--47 [] @texttt void resize (size_type loc_nrow1 = 0, size_type loc_ncol1 = 0, s ize_type loc_nnz1 = 0)[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 49--49 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership, size_type nnz1 = 0)[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 55--55 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 56--56 [] @texttt csr (const std::initializer_list > & init_list);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 62--62 [] @texttt const distributor& row_ownership() const { return base::data().r ow_ownership(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 63--63 [] @texttt const distributor& col_ownership() const { return base::data().c ol_ownership(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 64--64 [] @texttt size_type dis_nrow () const { return row_ownership( ).dis_size(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 65--65 [] @texttt size_type dis_ncol () const { return col_ownership( ).dis_size(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 66--66 [] @texttt size_type dis_nnz () const { return base::data().n nz(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 68--68 [] @texttt bool is_symmetric() const { return base::data().i s_symmetric(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 69--69 [] @texttt void set_symmetry (bool is_symm) const { base::data().set_symm etry(is_symm); }[] [89] Overfull \hbox (95.42339pt too wide) in paragraph at lines 70--70 [] @texttt void set_symmetry_by_check (const T& tol = std::numeric_limits::epsilon()) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 71--71 [] @texttt { base::data().set_symm etry_by_check(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 72--72 [] @texttt bool is_definite_positive() const { return base::data().i s_definite_positive(); }[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 73--73 [] @texttt void set_definite_positive (bool is_defpos) const { base::data() .set_definite_positive(is_defpos); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 74--74 [] @texttt size_type pattern_dimension() const { return base::data().p attern_dimension(); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 75--75 [] @texttt void set_pattern_dimension(size_type dim) const { base::data().s et_pattern_dimension(dim); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 76--76 [] @texttt T max_abs () const { return base::data().m ax_abs(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 79--79 [] @texttt size_type nrow () const { return base::data().n row(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 80--80 [] @texttt size_type ncol () const { return base::data().n col(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 81--81 [] @texttt size_type nnz () const { return base::data().n nz(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 84--84 [] @texttt size_type row_first_index () const { return base::data().r ow_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 85--85 [] @texttt size_type row_last_index () const { return base::data().r ow_last_index(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 86--86 [] @texttt size_type col_first_index () const { return base::data().c ol_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 87--87 [] @texttt size_type col_last_index () const { return base::data().c ol_last_index(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 89--89 [] @texttt const_iterator begin() const { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 90--90 [] @texttt const_iterator end() const { return base::data().e nd(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 91--91 [] @texttt iterator begin_nonconst() { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 92--92 [] @texttt iterator end_nonconst() { return base::data().e nd(); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 96--96 [] @texttt const_iterator ext_begin() const { return const_iterator (); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 97--97 [] @texttt const_iterator ext_end() const { return const_iterator (); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 105--105 [] @texttt void mult (const vec& x, vec& y) const {[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 108--108 [] @texttt vec operator* (const vec& x) const {[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 113--113 [] @texttt void trans_mult (const vec& x, vec& y) const {[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 116--116 [] @texttt vec trans_mult (const vec& x) const {[] [90] Overfull \hbox (20.69044pt too wide) in paragraph at lines 133--133 [] @texttt void dump (const std::string& name) const { base::data().dump(na me); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 167--167 []@texttt class csr : public smart_pointer > {[] [91] Overfull \hbox (32.18782pt too wide) in paragraph at lines 186--186 [] @texttt explicit csr(const asr& a) : base(new_macro(rep (a))) {}[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 187--187 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership, size_type nnz1 = 0)[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 193--193 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 194--194 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 200--200 [] @texttt const distributor& row_ownership() const { return base::data().r ow_ownership(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 201--201 [] @texttt const distributor& col_ownership() const { return base::data().c ol_ownership(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 202--202 [] @texttt size_type dis_nrow () const { return row_ownership( ).dis_size(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 203--203 [] @texttt size_type dis_ncol () const { return col_ownership( ).dis_size(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 204--204 [] @texttt size_type dis_nnz () const { return base::data().d is_nnz(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 205--205 [] @texttt size_type dis_ext_nnz () const { return base::data().d is_ext_nnz(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 206--206 [] @texttt bool is_symmetric() const { return base::data().i s_symmetric(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 207--207 [] @texttt void set_symmetry (bool is_symm) const { base::data().set_symm etry(is_symm); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 208--208 [] @texttt void set_symmetry_by_check (const T& tol = std::numeric_limits::epsilon()) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 209--209 [] @texttt { base::data().set_symm etry_by_check(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 210--210 [] @texttt bool is_definite_positive() const { return base::data().i s_definite_positive(); }[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 211--211 [] @texttt void set_definite_positive (bool is_defpos) const { base::data() .set_definite_positive(is_defpos); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 212--212 [] @texttt size_type pattern_dimension() const { return base::data().p attern_dimension(); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 213--213 [] @texttt void set_pattern_dimension(size_type dim) const { base::data().s et_pattern_dimension(dim); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 214--214 [] @texttt T max_abs () const { return base::data().m ax_abs(); }[] [92] Overfull \hbox (32.18782pt too wide) in paragraph at lines 217--217 [] @texttt size_type nrow () const { return base::data().n row(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 218--218 [] @texttt size_type ncol () const { return base::data().n col(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 219--219 [] @texttt size_type nnz () const { return base::data().n nz(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 222--222 [] @texttt size_type row_first_index () const { return base::data().r ow_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 223--223 [] @texttt size_type row_last_index () const { return base::data().r ow_last_index(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 224--224 [] @texttt size_type col_first_index () const { return base::data().c ol_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 225--225 [] @texttt size_type col_last_index () const { return base::data().c ol_last_index(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 227--227 [] @texttt const_iterator begin() const { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 228--228 [] @texttt const_iterator end() const { return base::data().e nd(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 229--229 [] @texttt iterator begin_nonconst() { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 230--230 [] @texttt iterator end_nonconst() { return base::data().e nd(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 233--233 [] @texttt size_type ext_nnz() const { return base::data().e xt_nnz(); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 234--234 [] @texttt const_iterator ext_begin() const { return base::data().e xt_begin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 235--235 [] @texttt const_iterator ext_end() const { return base::data().e xt_end(); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 236--236 [] @texttt iterator ext_begin_nonconst() { return base::data().e xt_begin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 237--237 [] @texttt iterator ext_end_nonconst() { return base::data().e xt_end(); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 238--238 [] @texttt size_type jext2dis_j (size_type jext) const { return base::data( ).jext2dis_j(jext); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 244--244 [] @texttt void mult (const vec& x, vec& y) const {[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 247--247 [] @texttt vec operator* (const vec& x) const {[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 252--252 [] @texttt void trans_mult (const vec& x, vec& y) const {[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 255--255 [] @texttt vec trans_mult (const vec& x) const {[] [93] Overfull \hbox (20.69044pt too wide) in paragraph at lines 272--272 [] @texttt void dump (const std::string& name) const { base::data().dump(na me); }[] [94]) (../../skit/plib2/dia.2texi [95]) (../../skit/plib2/disarray.2texi [96] [97] Overfull \hbox (89.6747pt too wide) in paragraph at lines 86--86 []@texttt class disarray : public smart_pointer > {[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 107--107 [] @texttt disarray (size_type loc_size = 0, const T& init_val = T(), const A& alloc = A());[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 109--109 [] @texttt disarray (const distributor& ownership, const T& init_val = T(), const A& alloc = A());[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 114--114 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 116--116 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 117--117 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 120--120 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 121--121 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 122--122 [] @texttt reference operator() (size_type i) { return base::da ta().operator[] (i); }[] [98] Overfull \hbox (112.66945pt too wide) in paragraph at lines 123--123 [] @texttt const_reference operator() (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 124--124 [] @texttt const_reference dis_at (size_type dis_i) const { return operator [] (dis_i); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 133--133 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::data(). dis_entry(dis_i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 146--146 [] @texttt template void set_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 147--147 [] @texttt template void append_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (216.14583pt too wide) in paragraph at lines 148--148 [] @texttt template void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const {}[] Overfull \hbox (216.14583pt too wide) in paragraph at lines 149--149 [] @texttt template void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const {}[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 154--154 [] @texttt void repartition ( // old_numberin g for *this[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 156--156 [] @texttt disarray& new_disarray, // new_ownershi p (created)[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 159--159 [] @texttt { return base::data().repartition (partition, new_disarray, old_numbering, new_numbering); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 162--162 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 164--164 [] @texttt disarray& new_disarray) const // new_owne rship (already allocated)[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 165--165 [] @texttt { return base::data().permutation_apply (new_numbering, new_ disarray); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 167--167 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 168--168 [] @texttt disarray& inew2dis_iold) const // new_ownership[] [99] Overfull \hbox (129.91551pt too wide) in paragraph at lines 173--173 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 174--174 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 176--176 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 178--178 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 179--179 [] @texttt void dump (std::string name) const { return base::data().dump(na me); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 185--185 []@texttt class disarray : public smart_pointer > {[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 206--206 [] @texttt disarray (const distributor& ownership = distributor(), co nst T& init_val = T(), const A& alloc = A());[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 207--207 [] @texttt void resize (const distributor& ownership = distributor(), const T& init_val = T());[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 211--211 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 213--213 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 214--214 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 217--217 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 218--218 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 219--219 [] @texttt reference operator() (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 220--220 [] @texttt const_reference operator() (size_type i) const { return base::da ta().operator[] (i); }[] [100] Overfull \hbox (377.10909pt too wide) in paragraph at lines 230--230 [] @texttt void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().append_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (359.86302pt too wide) in paragraph at lines 233--233 [] @texttt void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().get_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 236--236 [] @texttt void append_dis_indexes (const Set& ext_idx_set) const { base::d ata().append_dis_indexes (ext_idx_set); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 240--240 [] @texttt void set_dis_indexes (const Set& ext_idx_set) const { base::d ata().set_dis_indexes (ext_idx_set); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 242--242 [] @texttt const T& dis_at (size_type dis_i) const { return base::data().di s_at (dis_i); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 245--245 [] @texttt const scatter_map_type& get_dis_map_entries() const { return bas e::data().get_dis_map_entries(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 249--249 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::data(). dis_entry(dis_i); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 252--252 [] @texttt void dis_entry_assembly_begin (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly_begin (my_set_op); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 254--254 [] @texttt void dis_entry_assembly_end (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly_end (my_set_op); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 256--256 [] @texttt void dis_entry_assembly (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly (my_set_op); }[] Overfull \hbox (302.37614pt too wide) in paragraph at lines 258--258 [] @texttt void dis_entry_assembly_begin() { base::data().template dis_entr y_assembly_begin::type>(); }[] Overfull \hbox (290.87877pt too wide) in paragraph at lines 259--259 [] @texttt void dis_entry_assembly_end() { base::data().template dis_entr y_assembly_end::type>(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 260--260 [] @texttt void dis_entry_assembly() { dis_entry_assembly_begin(); di s_entry_assembly_end(); }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 265--265 [] @texttt void repartition ( // old_numbering for *this[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 267--267 [] @texttt disarray& new_disarray, // new_own ership (created)[] [101] Overfull \hbox (331.11958pt too wide) in paragraph at lines 270--270 [] @texttt { return base::data().repartition (partition.data(), new_dis array.data(), old_numbering.data(), new_numbering.data()); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 273--273 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 275--275 [] @texttt disarray& new_disarray) const // new_owne rship (already allocated)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 276--276 [] @texttt { base::data().permutation_apply (new_numbering.data(), new_ disarray.data()); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 278--278 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 279--279 [] @texttt disarray& inew2dis_iold) const // new_ownership[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 284--284 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 285--285 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 286--286 [] @texttt void dump (std::string name) const { return base::data().du mp(name); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 289--289 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 291--291 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 292--292 [] @texttt template odiststream& permuted_put _values ([] Overfull \hbox (239.14058pt too wide) in paragraph at lines 293--293 [] @texttt odiststream& ops, const disarray& perm, PutFunction put_element) const[] Overfull \hbox (428.84727pt too wide) in paragraph at lines 294--294 [] @texttt { return base::data().permuted_put_values (ops, perm.data(), put_element); }[] ) (../../skit/plib2/distributor.2texi [102] Overfull \hbox (14.94176pt too wide) in paragraph at lines 54--54 [] @texttt /// find iproc associated to a global index dis_i: CPU=log(n proc)[] [103]) (../../skit/plib2/diststream.2texi [104] Overfull \hbox (95.42339pt too wide) in paragraph at lines 81--81 [] @texttt io::mode_type mode = io::out, const communicator& comm = communicator());[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 83--83 [] @texttt io::mode_type mode, const communicator& comm = communi cator());[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 84--84 [] @texttt odiststream (std::string filename, std::string suffix, const commu nicator& comm);[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 86--86 [] @texttt odiststream(std::ostream& os, const communicator& comm = communica tor());[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 92--92 [] @texttt io::mode_type mode = io::out, const communicator& comm = communicator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 94--94 [] @texttt io::mode_type mode, const communicator& comm = communic ator());[] [105] Overfull \hbox (32.18782pt too wide) in paragraph at lines 129--129 [] @texttt idiststream (std::istream& is, const communicator& comm = communic ator());[] [106]) (../../skit/plib2/environment.2texi) (../../skit/plib2/eye.2texi) (../../skit/plib2/solver.2texi [107] [108] Overfull \hbox (158.65895pt too wide) in paragraph at lines 104--104 [] @texttt explicit solver_basic (const csr& a, const solver_option_type & opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 117--117 []@texttt solver_basic ldlt(const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 119--119 []@texttt solver_basic lu (const csr& a, const solver_option_type& opt = solver_option_type());[] [109] Overfull \hbox (147.16158pt too wide) in paragraph at lines 126--126 []@texttt solver_basic ic0 (const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 128--128 []@texttt solver_basic ilu0(const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 130--130 []@texttt solver_basic ldlt_seq(const csr& a, const solver_option_ty pe& opt = solver_option_type());[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 132--132 []@texttt solver_basic lu_seq (const csr& a, const solver_option_ty pe& opt = solver_option_type());[] ) (../../skit/plib2/solver_abtb.2texi [110] Overfull \hbox (43.6852pt too wide) in paragraph at lines 66--66 [] @texttt solver_abtb_basic (const csr& a, const csr& b, const csr & mp,[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 69--69 [] @texttt solver_abtb_basic (const csr& a, const csr& b, const csr & c, const csr& mp,[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 75--75 [] @texttt void solve (const vec& f, const vec& g, vec& u, vec & p) const;[] [111]) (../../skit/plib2/solver_option_type.2texi Overfull \hbox (158.65895pt too wide) in paragraph at lines 19--19 [] @texttt static const long int decide = -1; // indicate the solver will try to choose the best method[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 23--23 [] @texttt mutable long int iterative; // indicate if we want to u se iterative solver[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 24--24 [] @texttt Float tol; // tolerance when using ite rative methode[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 25--25 [] @texttt size_type max_iter; // maximum number of iterat ion when using iterative method[] Overfull \hbox (319.62221pt too wide) in paragraph at lines 26--26 [] @texttt size_type n_refinement; // number of iterative refi nement, when using direct method (umfpack only support it)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 27--27 [] @texttt bool compute_determinant; // compute also det, when using direct method[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28--28 [] @texttt std::string prefered_library; // e.g. "umfpack", when ava ilable[] Overfull \hbox (371.3604pt too wide) in paragraph at lines 31--31 [] @texttt bool force_seq; // (still buggy; when using direct) restrict to diagonal blocs per process (e.g. mumps solver)[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 32--32 [] @texttt size_type level_of_fill; // (in development) Level o f fill [1:5] for incomplete factorisation[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 33--33 [] @texttt size_type amalgamation; // (in development) Level o f amalgamation [10:70] for Kass[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 34--34 [] @texttt size_type ooc; // (in development) out-of- core limit (Mo/percent depending on compilation options)[] [112]) (../../skit/plib2/vec.2texi Overfull \hbox (37.93651pt too wide) in paragraph at lines 33--33 [] @texttt typedef std::ptrdiff_t differe nce_type;[] [113] Overfull \hbox (37.93651pt too wide) in paragraph at lines 36--36 [] @texttt typedef typename base::const_reference const_r eference;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 38--38 [] @texttt typedef typename base::const_iterator const_i terator;[] [114] Overfull \hbox (14.94176pt too wide) in paragraph at lines 105--105 [] @texttt vec (const std::initializer_list >& init_l ist);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 106--106 [] @texttt vec& operator= (const std::initializer_list >& init_list);[] ) (../../util/lib/rheostream.2texi [115] [116] Overfull \hbox (101.17207pt too wide) in paragraph at lines 144--144 []@texttt class irheostream : public boost::iostreams::filtering_stream {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 146--146 [] @texttt irheostream() : boost::iostreams::filtering_stream() {}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 147--147 [] @texttt irheostream(const std::string& name, const std::string& suffix = std::string());[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 149--149 [] @texttt void open (const std::string& name, const std::string& suffix = std::string());[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 155--155 []@texttt class orheostream : public boost::iostreams::filtering_stream {[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 157--157 [] @texttt orheostream() : boost::iostreams::filtering_stream() {}[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 158--158 [] @texttt orheostream(const std::string& name, const std::string& suffix = std::string(),[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 161--161 [] @texttt void open (const std::string& name, const std::string& suffix = std::string(),[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 177--177 []@texttt bool scatch (std::istream& in, const std::string& ch, bool full_matc h = true);[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 183--183 []@texttt std::string delete_suffix (const std::string& name, const std::strin g& suffix);[] [117] Overfull \hbox (158.65895pt too wide) in paragraph at lines 192--192 []@texttt std::string get_full_name_from_rheo_path (const std::string& rootnam e, const std::string& suffix);[] ) Chapter 6 [118] (../../nfem/plib/adapt.4texi [119] Overfull \hbox (124.16682pt too wide) in paragraph at lines 115--115 [] @texttt Float anglecorner; // angle below which bamg considers 2 consec utive edge to be part of[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 119--119 [] @texttt isotropic(true), err(1e-2), errg(1e-1), hcoef(1), hmin(0.000 1), hmax(0.3), ratio(0), cutoff(1e-7),[] [120] Overfull \hbox (89.6747pt too wide) in paragraph at lines 122--122 [] @texttt anisomax(1e6), clean(false), additional("-RelError"), double _precision(false),[] ) (../../nfem/plib/compose.4texi) (../../nfem/plib/damped_newton.4texi [121] Overfull \hbox (118.41814pt too wide) in paragraph at lines 34--34 []@texttt int damped_newton (Problem P, Field& u, Real& tol, Size& max_iter, o diststream* p_derr=0) {[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 35--35 [] @texttt return damped_newton(P, newton_identity_preconditioner(), u, tol, max_iter, p_derr);[] ) (../../nfem/plib/integrate.4texi [122] Overfull \hbox (7.51953pt too wide) in paragraph at lines 48--54 []@textrm The last ar-gu-ment spec-i-fies the quadra-ture for-mu-lae (see Sec-t ion 5.13 [quadra-ture[]option[]type ) (../../nfem/plib/interpolate.4texi [123]) (../../nfem/plib/level_set.4texi [124]) (../../nfem/plib/limiter.4texi) (../../nfem/plib/newton.4texi [125] Overfull \hbox (112.66945pt too wide) in paragraph at lines 43--43 []@texttt int newton (Problem P, Field& uh, Float& tol, size_t& max_iter, odis tstream *p_derr = 0) {[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 44--44 [] @texttt if (p_derr) *p_derr << "# Newton:" << std::endl << "# n r" << st d::endl << std::flush;[] ) (../../nfem/plib/riesz.4texi [126] [127] [128]) (../../skit/plib2/diag.4texi) (../../skit/plib2/dis_time.4texi [129]) (../../skit/plib2/mixed_solver.4texi Overfull \hbox (175.90501pt too wide) in paragraph at lines 20--20 [] @texttt template [] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21--21 [] @texttt int pcg_abtb (const Matrix& A, const Matrix& B, Vector& u, Vecto r& p,[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 26--26 [] @texttt template [] Overfull \hbox (118.41814pt too wide) in paragraph at lines 27--27 [] @texttt int pcg_abtbc (const Matrix& A, const Matrix& B, const Matrix& C , Vector& u, Vector& p,[] [130]) (../../skit/plib2/pcg.4texi Overfull \hbox (26.43913pt too wide) in paragraph at lines 12--12 [] @texttt template [] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14--14 [] @texttt const Preconditioner &M, int &max_iter, Real &tol, odiststream *p_derr=0);[] [131] Overfull \hbox (11.95166pt too wide) in paragraph at lines 57--63 @textrm Pozo, C. Romine, H. Van der Vorst, SIAM, 1994, @texttt ftp.netlib.org/t emplates/templates.ps[]@textrm . Overfull \hbox (98.24414pt too wide) in paragraph at lines 64--68 @textrm The present im-ple-men-ta-tion is in-spired from @texttt IML++ 1.2[] @t extrm it-er-a-tive method li-brary, @texttt http://math.nist.gov/iml++[]@textrm . Overfull \hbox (158.65895pt too wide) in paragraph at lines 73--73 []@texttt template [] Overfull \hbox (49.43388pt too wide) in paragraph at lines 74--74 []@texttt int pcg(const Matrix &A, Vector &x, const Vector2 &Mb, const Precond itioner &M,[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 75--75 [] @texttt Size &max_iter, Real &tol, odiststream *p_derr = 0, std::str ing label = "cg")[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 82--82 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 88--88 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << n << " " << sqrt(norm2_r/norm2_b) << std::endl;[] [132]) (../../skit/plib2/pgmres.4texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 13--13 [] @texttt int pgmres (const Matrix &A, Vector &x, const Vector &b, const Pr econditioner &M,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 27--27 [] @texttt int status = pgmres (a, x, b, ic0(a), H, dummy, m, max_iter, tol);[] [133] Overfull \hbox (98.24414pt too wide) in paragraph at lines 90--93 @textrm The present im-ple-men-ta-tion is in-spired from @texttt IML++ 1.2[] @t extrm it-er-a-tive method li-brary, @texttt http://math.nist.gov/iml++[]@textrm . Overfull \hbox (14.94176pt too wide) in paragraph at lines 102--102 []@texttt template [] [134] Overfull \hbox (37.93651pt too wide) in paragraph at lines 143--143 []@texttt pgmres (const Matrix &A, Vector &x, const Vector &b, const Precondit ioner &M,[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 144--144 [] @texttt SmallMatrix &H, const SmallVector&, const Size &m, Size &max_i ter, Real &tol,[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 156--156 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] # norm_b=" << norm_b < < std::endl;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 157--157 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] [135] Overfull \hbox (141.41289pt too wide) in paragraph at lines 187--187 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << j << " " << r esidue/norm_b << std::endl;[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 200--200 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << j << " " << res idue/norm_b << std::endl;[] ) (../../skit/plib2/pminres.4texi Overfull \hbox (26.43913pt too wide) in paragraph at lines 12--12 [] @texttt template [] Overfull \hbox (89.6747pt too wide) in paragraph at lines 13--13 [] @texttt int pminres (const Matrix &A, Vector &x, const Vector &b, const Preconditioner &M,[] [136] Overfull \hbox (72.42863pt too wide) in paragraph at lines 62--62 []@texttt template [] Overfull \hbox (66.67995pt too wide) in paragraph at lines 63--63 []@texttt int pminres(const Matrix &A, Vector &x, const Vector &Mb, const Prec onditioner &M,[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 64--64 [] @texttt Size &max_iter, Real &tol, odiststream *p_derr = 0, std::string la bel = "minres")[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 74--74 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] # norm_b=" <[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13--13 [] @texttt int puzawa (const Matrix &A, Vector &x, const Vector &b, const P reconditioner &M,[] [139] Overfull \hbox (78.17732pt too wide) in paragraph at lines 58--58 []@texttt template < class Matrix, class Vector, class Preconditioner, class R eal, class Size>[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 59--59 []@texttt int puzawa(const Matrix &A, Vector &x, const Vector &Mb, const Preco nditioner &M,[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 67--67 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 72--72 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << n << " " << sqrt(norm2_r/norm2_b) << std::endl;[] ) (../../util/lib/catchmark.4texi [140] Overfull \hbox (55.18257pt too wide) in paragraph at lines 27--27 [] @texttt friend std::istream& operator >> (std::istream& is, const ca tchmark& m);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 28--28 [] @texttt friend std::ostream& operator << (std::ostream& os, const ca tchmark& m);[] ) Chapter 7 [141] [142] (../../nfem/plib/basis.7texi [143]) (../../nfem/plib/domain_indirect.7texi Overfull \hbox (158.65895pt too wide) in paragraph at lines 34--34 []@texttt class domain_indirect_basic : public smart_pointer > {[] [144] Overfull \hbox (181.6537pt too wide) in paragraph at lines 59--59 [] @texttt disarray >,sequen tial, heap_allocator >&[] [145] Overfull \hbox (204.64845pt too wide) in paragraph at lines 88--88 [] @texttt idiststream& get (idiststream& ips, const geo_rep& omega, std::vector *ball);[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 94--94 []@texttt class domain_indirect_basic : public smart_pointer > {[] [146] Overfull \hbox (37.93651pt too wide) in paragraph at lines 143--143 [] @texttt idiststream& get (idiststream& ips, const geo_rep & omega);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 145--145 [] @texttt odiststream& put (odiststream& ops, const geo_rep & omega) const;[] ) (../../nfem/plib/geo_domain.7texi) (../../nfem/plib/geo_domain_indirect.7texi [147]) (../../nfem/plib/numbering.7texi Overfull \hbox (43.6852pt too wide) in paragraph at lines 48--48 [] @texttt const basis_basic& get_basis() const { return base::data().get_ basis(); }[] [148] Overfull \hbox (204.64845pt too wide) in paragraph at lines 52--52 [] @texttt void dis_idof (const geo_size& gs, const geo_element& K, st d::vector& dis_idof) const;[] ) (../../nfem/geo_element/edge.7texi) (../../nfem/geo_element/geo_element.7texi [149]) (../../nfem/geo_element/hack_array.7texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 19--19 [] @texttt std::pair param (reference_element::t, 3); // tri angle, order=3[] [150] Overfull \hbox (72.42863pt too wide) in paragraph at lines 52--52 []@texttt class hack_array : public smart_pointer > {[] [151] Overfull \hbox (152.91026pt too wide) in paragraph at lines 73--73 [] @texttt hack_array (size_type loc_size, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 74--74 [] @texttt void resize (const distributor& ownership, const parameter_typ e& param);[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 75--75 [] @texttt hack_array (const distributor& ownership, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [] @texttt void resize (size_type loc_size, const parameter_typ e& param);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 80--80 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 82--82 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 83--83 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 86--86 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 87--87 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 89--89 [] @texttt const_reference dis_at (size_type dis_i) const { return base::da ta().operator[] (dis_i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 98--98 [] @texttt template void append_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 103--103 [] @texttt dis_reference dis_entry (size_type dis_i) { return operator[] (d is_i); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 116--116 [] @texttt void repartition ( // old_numberin g for *this[] [152] Overfull \hbox (49.43388pt too wide) in paragraph at lines 118--118 [] @texttt hack_array& new_array, // new_ownershi p (created)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 121--121 [] @texttt { return base::data().repartition (partition, new_array, old _numbering, new_numbering); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 124--124 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 126--126 [] @texttt hack_array& new_array) const // new_owner ship (already allocated)[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 127--127 [] @texttt { return base::data().permutation_apply (new_numbering, new_ array); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 132--132 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 133--133 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 135--135 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 137--137 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 139--139 [] @texttt void dump (std::string name) const { return base::data().dump(na me); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 146--146 []@texttt class hack_array : public smart_pointer > {[] [153] Overfull \hbox (152.91026pt too wide) in paragraph at lines 168--168 [] @texttt hack_array (const distributor& ownership, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 169--169 [] @texttt void resize (const distributor& ownership, const parameter_typ e& param);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 173--173 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 175--175 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 176--176 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 179--179 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 180--180 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (377.10909pt too wide) in paragraph at lines 190--190 [] @texttt void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().append_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (359.86302pt too wide) in paragraph at lines 193--193 [] @texttt void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().get_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 196--196 [] @texttt void append_dis_indexes (const Set& ext_idx_set) const { base::d ata().append_dis_indexes (ext_idx_set); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 199--199 [] @texttt void set_dis_indexes (const Set& ext_idx_set) { base::data() .set_dis_indexes (ext_idx_set); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 201--201 [] @texttt const_reference dis_at (size_type dis_i) const { return base::da ta().dis_at (dis_i); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 204--204 [] @texttt const scatter_map_type& get_dis_map_entries() const { return bas e::data().get_dis_map_entries(); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 206--206 [] @texttt void update_dis_entries() const { base::data().update_dis_entrie s(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 210--210 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::d ata().dis_entry(dis_i); }[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 212--212 [] @texttt void dis_entry_assembly() { return base::d ata().dis_entry_assembly(); }[] [154] Overfull \hbox (244.88927pt too wide) in paragraph at lines 215--215 [] @texttt void dis_entry_assembly (SetOp my_set_op) { return base::d ata().dis_entry_assembly (my_set_op); }[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 217--217 [] @texttt void dis_entry_assembly_begin (SetOp my_set_op) { return base::d ata().dis_entry_assembly_begin (my_set_op); }[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 219--219 [] @texttt void dis_entry_assembly_end (SetOp my_set_op) { return base::d ata().dis_entry_assembly_end (my_set_op); }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 224--224 [] @texttt void repartition ( // old_numbering for *this[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 226--226 [] @texttt hack_array& new_array, // new_owne rship (created)[] Overfull \hbox (313.87352pt too wide) in paragraph at lines 229--229 [] @texttt { return base::data().repartition (partition.data(), new_arr ay.data(), old_numbering.data(), new_numbering.data()); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 233--233 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 235--235 [] @texttt hack_array& new_array) const // new_owner ship (already allocated)[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 236--236 [] @texttt { base::data().permutation_apply (new_numbering.data(), new_ array.data()); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 238--238 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 239--239 [] @texttt hack_array& inew2dis_iold) const // new_ownership[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 245--245 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 246--246 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 248--248 [] @texttt void dump (std::string name) const { return base::data().du mp(name); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 255--255 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 263--263 [] @texttt { return base::data().permuted_put_values (ops, perm.da ta(), put_element); }[] [155]) (../../nfem/geo_element/hexahedron.7texi [156]) (../../nfem/geo_element/point.7texi [157]) (../../nfem/geo_element/prism.7texi [158]) (../../nfem/geo_element/quadrangle.7texi [159]) (../../nfem/geo_element/quadrature.7texi [160] Overfull \hbox (20.69044pt too wide) in paragraph at lines 65--65 [] @texttt family_type get_family() const { return base::data().get_fami ly();}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 66--66 [] @texttt std::string get_family_name() const { return base::data().get _family_name();}[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 67--67 [] @texttt const quadrature_option_type& get_options() const { return base: :data().get_options(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 68--68 [] @texttt size_type size (reference_element hat_K) const { return ba se::data().size(hat_K); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 69--69 [] @texttt const_iterator begin (reference_element hat_K) const { return ba se::data().begin(hat_K); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 70--70 [] @texttt const_iterator end (reference_element hat_K) const { return ba se::data().end(hat_K); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 71--71 [] @texttt const weighted_point& operator() (reference_element hat_K, si ze_type q) const[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 72--72 [] @texttt { return ba se::data().operator() (hat_K,q); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 74--74 [] @texttt friend std::ostream& operator<< (std::ostream& os, const quadrat ure& q) {[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [] @texttt base::data().side_initialize (tilde_K, loc_isid, hat_S, shift, orient);[] [161]) (../../nfem/geo_element/reference_element.7texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 58--58 [] @texttt : _x(x) { assert_macro (x >= 0 && x <= max_variant, "invalid t ype " << x); }[] [162] Overfull \hbox (112.66945pt too wide) in paragraph at lines 63--63 [] @texttt void set_variant (size_type n_vertex, size_type dim) { _x = vari ant (n_vertex, dim); }[] Overfull \hbox (141.41289pt too wide) in paragraph at lines 72--72 [] @texttt size_type n_subgeo(size_type subgeo_dim) const { return n_subgeo (variant(), subgeo_dim); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 75--75 [] @texttt size_type subgeo_size (size_type subgeo_dim, size_type loc_isid) const {[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 77--77 [] @texttt size_type subgeo_local_vertex(size_type subgeo_dim, size_type lo c_isid, size_type loc_jsidvert) const {[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 78--78 [] @texttt return subgeo_local_node (_x, 1, subgeo_dim, loc_isid, loc_j sidvert); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 84--84 [] @texttt void side_normal (size_type loc_isid, point_basic& hat_n) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 90--90 [] @texttt static char name (variant_type variant) { return _na me [variant]; }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 91--91 [] @texttt static size_type dimension (variant_type variant) { return _di mension[variant]; }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 92--92 [] @texttt static size_type n_vertex (variant_type variant) { return _n_ vertex [variant]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 93--93 [] @texttt static size_type n_node (variant_type variant, size_type or der);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 97--97 [] @texttt static size_type n_subgeo (variant_type variant, size_type subgeo_dim);[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 98--98 [] @texttt static size_type subgeo_n_node (variant_type variant, size_type order, size_type subgeo_dim, size_type loc_isid);[] Overfull \hbox (423.09859pt too wide) in paragraph at lines 99--99 [] @texttt static size_type subgeo_local_node (variant_type variant, size_t ype order, size_type subgeo_dim, size_type loc_isid, size_type loc_jsidnod);[] Overfull \hbox (239.14058pt too wide) in paragraph at lines 106--106 [] @texttt static size_type first_inod_by_variant (variant_type variant, si ze_type order, variant_type subgeo_variant);[] [163] Overfull \hbox (233.39189pt too wide) in paragraph at lines 107--107 [] @texttt static size_type last_inod_by_variant (variant_type variant, si ze_type order, variant_type subgeo_variant)[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 108--108 [] @texttt { return first_inod_by_variant (variant, order, subgeo_varian t+1); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 109--109 [] @texttt static size_type first_inod (variant_type variant, size_type ord er, size_type subgeo_dim)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 110--110 [] @texttt { return first_inod_by_variant (variant, order, first_variant _by_dimension(subgeo_dim)); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 111--111 [] @texttt static size_type last_inod (variant_type variant, size_type ord er, size_type subgeo_dim)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 112--112 [] @texttt { return first_inod_by_variant (variant, order, last_variant _by_dimension(subgeo_dim)); }[] Overfull \hbox (382.85777pt too wide) in paragraph at lines 113--113 [] @texttt static void init_local_nnode_by_variant (size_type order, std::a rray& loc_nnod_by_variant);[] ) (../../nfem/geo_element/tetrahedron.7texi [164] [165]) (../../nfem/geo_element/triangle.7texi [166]) (../../skit/plib2/index_set.7texi [167] Overfull \hbox (89.6747pt too wide) in paragraph at lines 41--41 [] @texttt friend void set_union (const index_set& a, const index_set& b, index_set& c);[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 42--42 [] @texttt friend void set_intersection (const index_set& a, const index_set& b, index_set& c);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 47--47 [] @texttt friend std::ostream& operator<< (std::ostream& os, const index_set & x);[] ) (../../skit/plib2/pair_set.7texi Overfull \hbox (32.18782pt too wide) in paragraph at lines 16--16 []@texttt class pair_set: public std::map, A> {[] [168] Overfull \hbox (14.94176pt too wide) in paragraph at lines 40--40 [] @texttt pair_set& operator+= (const pair_type& x); // c := a unio n {x}[] ) (../../util/lib/Vector.7texi [169] [170] Overfull \hbox (49.43388pt too wide) in paragraph at lines 101--101 [] @texttt void insert (iterator position, const_iterator first, const_iter ator last);[] ) (../../util/lib/heap_allocator.7texi Overfull \hbox (147.16158pt too wide) in paragraph at lines 20--20 [] @texttt typedef map , heap_allocator > > map_type;[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 24--24 [] @texttt for (map_type::iterator iter = a.begin(), last = a.end(); iter ! = last; iter++) {[] [171] Overfull \hbox (14.94176pt too wide) in paragraph at lines 60--60 [] @texttt : handler ((typename heap_allocator::handler_type*)(ha.hand ler))[] [172] Overfull \hbox (129.91551pt too wide) in paragraph at lines 88--88 [] @texttt size_type max_size() const { return std::numeric_limits::max() / sizeof(T); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 97--97 [] @texttt // C++ 2011: default construct a value of type T at the location referenced by p[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 98--98 [] @texttt void construct (pointer p) { new ( reinterpret_cast(p) ) T(); }[] ) (../../util/lib/smart_pointer.7texi [173] Overfull \hbox (60.93126pt too wide) in paragraph at lines 81--81 [] @texttt Pour mieux developper avec C++ : design pattern, STL, RTTI et sm art pointers,[] [174] Overfull \hbox (14.94176pt too wide) in paragraph at lines 83--83 [] @texttt [2] STLplus, http://stlplus.sourceforge.net/stlplus3/docs/smart_ptr .html[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 126--126 [] @texttt int reference_counter() const { return _count != 0 ? _count->_n : -1; }[] ) (../../util/lib/stack_allocator.7texi [175] Overfull \hbox (35.10944pt too wide) in paragraph at lines 16--19 @textrm ex-cep-tion is em-mited. For a non-limited mem-ory han-dler in the same spirit, see @texttt "@textrm heap[]allocator@texttt "@textrm (9). Overfull \hbox (72.42863pt too wide) in paragraph at lines 24--24 [] @texttt stack_allocator stack_alloc (stack.begin().operator->(), stack.size());[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 25--25 [] @texttt typedef map , stack_allocator > > map_type;[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 29--29 [] @texttt for (map_type::iterator iter = a.begin(), last = a.end(); iter ! = last; iter++) {[] [176] Overfull \hbox (20.69044pt too wide) in paragraph at lines 70--70 [] @texttt : handler ((typename stack_allocator::handler_type*)(sa.han dler))[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 99--99 [] @texttt size_type max_size() const { return std::numeric_limits::max() / sizeof(T); }[] [177] Overfull \hbox (78.17732pt too wide) in paragraph at lines 108--108 [] @texttt // C++ 2011: default construct a value of type T at the location referenced by p[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 109--109 [] @texttt void construct (pointer p) { new ( reinterpret_cast(p) ) T(); }[] [178] Overfull \hbox (32.18782pt too wide) in paragraph at lines 164--164 [] @texttt trace_macro ("stack_allocator::mem_info cstori: size="<>/doc/refman/FAQ.texi Chapter 10 [194] Overfull \hbox (10.36597pt too wide) in paragraph at lines 77--82 []@textrm the au-to-mat-i-cally gen-er-ated script, scan the ma-chine and tran s-late `@texttt config.h.in[]@textrm '[], [195] [196]) (/<>/doc/refman/gpl.texi Appendix @char @appendixno [197] [198] Underfull \hbox (badness 2368) in paragraph at lines 63--63 []@secrm TERMS AND CON-DI-TIONS FOR COPY-ING, [199] [200] [201] [202] [203] [204]) (Concept Index) [205] [206] (/<>/doc/refman/rheolef-refman.cps [207]) (Program Index) [208] (/<>/doc/refman/rheolef-refman.pgs) (Class Index) [209] [210] (/<>/doc/refman/rheolef-refman.cls) (Approximation Index) [211] [212] (/<>/doc/refman/rheolef-refman.aps) (Function Index) [213] [214] (/<>/doc/refman/rheolef-refman.fns) (File Format Index) [215] [216] (/<>/doc/refman/rheolef-refman.fis) (Related Tool Index) [217] [218] (/<>/doc/refman/rheolef-refman.tos [219]) [220] (/<>/doc/refman/rheolef-refman.toc) [-1] [-2] (/<>/doc/refman/rheolef-refman.toc [-3] [-4] [-5]) [-6] ) (see the transcript file for additional information) Output written on rheolef-refman.dvi (228 pages, 565956 bytes). Transcript written on rheolef-refman.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=etex) restricted \write18 enabled. entering extended mode (././rheolef-refman.texi (/<>/doc/refman/texinfo.tex Loading texinfo [version 1999-03-26.17]: Basics, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, localization, and turning on texinfo input format.) (/<>/doc/refman/rheolef-refman.aux) (/<>/doc/refman/myversion.texi) [1] [2] Chapter 1 (/<>/doc/refman/introduction.texi) (/<>/doc/refman/INSTALL.texi Chapter 2 [1] [2] Overfull \hbox (55.18257pt too wide) in paragraph at lines 54--54 [] @texttt firefox http://ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef -refman.html[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 70--70 [] @texttt firefox http://ljk.imag.fr/membres/Pierre.Saramito/rheolef/source_ html/[] [3] [4] [5] Overfull \hbox (55.18257pt too wide) in paragraph at lines 311--311 [] @texttt CXX=icpc CXXFLAGS=-I/usr/local/include LIBS="-L/usr/local/lib -lz" ./configure[] Overfull \hbox (1.0965pt too wide) in paragraph at lines 362--364 []@textrm Set the home di-rec-tory for the @texttt cln[] @textrm li-brary. De- fault @textsl dir[]cln @textrm is `@texttt /usr/local/math[]@textrm '[]. [6] Overfull \hbox (31.82034pt too wide) in paragraph at lines 420--426 @textsl dir[]parmetis @textrm for @texttt libparmetis.so[]@textrm , @texttt li bparmetis.a[] @textrm and also @texttt libmetis.a[] libmetis.so[]@textrm . Overfull \hbox (44.75717pt too wide) in paragraph at lines 438--444 []@textrm Turns on/off the @texttt scalapack[] @textrm li-braries. Check in @t extsl rheo[]libs[]scalapack @textrm for @texttt libscalapack.so[]@textrm , Overfull \hbox (16.5128pt too wide) in paragraph at lines 448--453 []@textrm Turns on/off the @texttt mumps[] @textrm dis-tributed solver. Check in @textsl lib-dir[]mumps @textrm for @texttt libmumps.so[]@textrm , Overfull \hbox (22.83936pt too wide) in paragraph at lines 464--468 []@textrm Turns on/off the @texttt pastix[] @textrm dis-tributed solver. Check in @textsl lib-dir[]pastix @textrm for @texttt libpastix.so[]@textrm , [7] Overfull \hbox (10.56544pt too wide) in paragraph at lines 475--480 @textrm and for header @textsl in-cdir[]cholmod@textrm /cholmod.h or @textsl i n-cdir[]cholmod@textrm /cholmod/cholmod.h. Overfull \hbox (83.97032pt too wide) in paragraph at lines 487--492 @texttt libumfpack.a[] @textrm and for header @textsl in-cdir[]umfpack@textrm /umfpack.h or @textsl in-cdir[]umfpack@textrm /umfpack/umfpack.h. [8]) Chapter 3 [9] [10] (/<>/doc/refman/includes.texi Chapter 4 [11] [12] (../../nfem/pbin/branch.1texi [13] [14]) (../../nfem/pbin/field.1texi [15] [16] [17] [18] Overfull \hbox (66.67995pt too wide) in paragraph at lines 288--288 [] @texttt field cube.field -cut -normal 0 1 0 -origin 0.5 0.5 0.5 -text > cube-cut.field[] [19]) (../../nfem/pbin/geo.1texi [20] [21] [22]) (../../nfem/pbin/msh2geo.1texi [23] Overfull \hbox (26.43913pt too wide) in paragraph at lines 57--57 [] @texttt i.e., the numbering follows that of the nodes of an embedded face/ volume.[] [24]) (../../nfem/sbin/bamg2geo.1texi [25]) (../../nfem/sbin/mkgeo_ball.1texi [26] Overfull \hbox (16.24315pt too wide) in paragraph at lines 63--67 @textrm The ge-om-e-try can be el-lipse/ellipsoid in-scribted in the [a,b]x[c,d ] rect-an-gle or the [a,b]x[c,d]x[f,g] [27]) (../../nfem/sbin/mkgeo_grid.1texi [28] Overfull \hbox (1.14882pt too wide) in paragraph at lines 79--82 @texttt -nosides[]@textrm The bound-ary sides are rep-resentd by do-mains: @te xttt left[]@textrm , @texttt right[]@textrm , @texttt top[]@textrm , @texttt bo ttom[]@textrm ,@texttt front[] [29]) (../../nfem/sbin/mkgeo_ugrid.1texi [30] Overfull \hbox (1.14882pt too wide) in paragraph at lines 98--101 @texttt -nosides[]@textrm The bound-ary sides are rep-resentd by do-mains: @te xttt left[]@textrm , @texttt right[]@textrm , @texttt top[]@textrm , @texttt bo ttom[]@textrm ,@texttt front[] [31]) (../../util/bamg/bamg.1texi [32] [33] [34] Overfull \hbox (32.18782pt too wide) in paragraph at lines 149--149 [] @texttt bamg -b toto_old.bamg -rbb toto_old.bb -r toto_new.bamg -obb tot o_new.bb[] [35] [36] [37] [38] [39] Overfull \hbox (68.45793pt too wide) in paragraph at lines 429--431 []@textrm Frederic Hecht @texttt <@textrm Fred-eric.Hecht@texttt @@textrm inria .fr@texttt > @textrm is the au-thor of bamg. Pierre Saramito @texttt <@textrm P ierre.Saramito@texttt @@textrm imag.fr@texttt > [40]) (../../config/rheolef-config.1texi Overfull \hbox (19.55571pt too wide) in paragraph at lines 433--2 []@textrm The orig-i-nal site of the bamg mesh gen-er-a-tor is @texttt http://w ww.ann.jussieu.fr/hecht/ftp/bamg[]@textrm . [41]) Chapter 5 [42] (../../nfem/plib/band.2texi Overfull \hbox (89.6747pt too wide) in paragraph at lines 57--57 [] @texttt size_type sid_ie2bnd_ie (size_type sid_ie) const { return _sid_ie2 bnd_ie [sid_ie]; }[] [43]) (../../nfem/plib/branch.2texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 37--37 []@texttt class branch_basic : public std::vector > > {[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt typedef std::vector > > base;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 42--42 [] @texttt typedef typename base::size_type size_type;[] [44] Overfull \hbox (20.69044pt too wide) in paragraph at lines 53--53 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 54--54 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 55--55 [] @texttt const std::string & u1);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 56--56 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 57--57 [] @texttt const std::string & u1,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 58--58 [] @texttt const std::string & u2);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 79--79 [] @texttt __obranch operator() (const T& t, const field_basic& u 0, Args... uk);[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 81--81 [] @texttt __iobranch operator() (T& t, field_basic& u 0, Args&... uk);[] [45]) (../../nfem/plib/characteristic.2texi [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 61--61 []@texttt class characteristic_basic : public smart_pointer > {[] ) (../../nfem/plib/field.2texi [47] [48] Overfull \hbox (67.46213pt too wide) in paragraph at lines 108--111 []@textrm The space as-so-ci-ated to the trace writes @texttt wh.get_space()[] @textrm and is equiv-a-lent to @texttt space(omega["boundary"], [49] Overfull \hbox (59.90681pt too wide) in paragraph at lines 154--161 @texttt d=omega.dimension()[]@textrm . A tensor-valued field has @texttt d*(d+1 )/2[] @textrm com-po-nents, where @texttt d=omega.dimension()[]@textrm . Overfull \hbox (147.16158pt too wide) in paragraph at lines 201--201 []@texttt class field_basic : public std::unary_function::type>,T> {[] [50] Overfull \hbox (43.6852pt too wide) in paragraph at lines 247--247 [] @texttt details::is_field_expr_v2_linear_arg::value[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 254--254 [] @texttt details::is_field_expr_v2_linear_arg::value[] [51] Overfull \hbox (72.42863pt too wide) in paragraph at lines 262--262 [] @texttt field_basic (const std::initializer_list >& init_list);[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 263--263 [] @texttt field_basic& operator= (const std::initializer_list >& init_list);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 279--279 [] @texttt vec& set_u() { dis_dof_indexes_requires_update( ); return _u; }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 280--280 [] @texttt vec& set_b() { dis_dof_indexes_requires_update( ); return _b; }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 292--292 [] @texttt field_indirect_const operator[] (const geo_basic& dom ) const;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 301--301 [] @texttt field_component operator() (size_type i_comp, size_ty pe j_comp);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 302--302 [] @texttt field_component_const operator() (size_type i_comp, size_ty pe j_comp) const;[] [52] Overfull \hbox (32.18782pt too wide) in paragraph at lines 306--306 [] @texttt const distributor& ownership() const { return get_space().owners hip(); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 329--329 [] @texttt T dis_evaluate (const point_basic& x, size_type i_comp = 0) c onst;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 330--330 [] @texttt T operator() (const point_basic& x) const { return dis_eval uate (x,0); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 338--338 [] @texttt T evaluate (const geo_element& K, const point_basic& hat_xq, size_type i_comp = 0) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 340--340 [] @texttt // propagate changed values shared at partition boundaries to ot hers procs[] [53]) (../../nfem/plib/field_functor.2texi [54] Overfull \hbox (55.18257pt too wide) in paragraph at lines 52--52 [] @texttt const Function& get_ref() const { return static_cast(*this); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 54--54 [] @texttt Result operator() (const point& x) const { return get_ref().operato r()(x); }[] ) (../../nfem/plib/form.2texi [55] [56] Overfull \hbox (60.93126pt too wide) in paragraph at lines 100--100 [] @texttt form_basic (const std::initializer_list > & init_list);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 101--101 [] @texttt form_basic (const std::initializer_list > & init_list);[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 120--120 [] @texttt float_type operator () (const field_basic& uh, const field_ basic& vh) const;[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 124--124 [] @texttt odiststream& put (odiststream& ops, bool show_partition = true) const;[] [57] [58] Overfull \hbox (152.91026pt too wide) in paragraph at lines 218--218 [] @texttt const geo_basic& w_omega, // the domain wh ere the fct weight is defined[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 221--221 []@texttt template form_basic trans (const form_basic& a);[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 222--222 []@texttt template field_basic diag (const form_basic& a);[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 223--223 []@texttt template form_basic diag (const field_basic< T,M>& dh);[] ) (../../nfem/plib/form_option_type.2texi [59]) (../../nfem/plib/functor.2texi [60]) (../../nfem/plib/geo.2texi [61] Overfull \hbox (129.91551pt too wide) in paragraph at lines 10--10 []@texttt class geo_basic : public smart_pointer_clone > {[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 27--27 [] @texttt typedef typename rep::const_iterator_by_variant const_iterator_b y_variant;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 33--33 [] @texttt geo_basic (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 34--34 [] @texttt void load (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 35--35 [] @texttt geo_basic (const domain_indirect_basic& dom, const g eo_basic& omega);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 41--41 [] @texttt const std::array >,sequential>,[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 47--47 [] @texttt std::string name() const { return base::data( ).name(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 48--48 [] @texttt std::string familyname() const { return base::data( ).familyname(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 49--49 [] @texttt size_type dimension() const { return base::data( ).dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 50--50 [] @texttt size_type map_dimension() const { return base::data( ).map_dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 51--51 [] @texttt size_type serial_number() const { return base::data( ).serial_number(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 52--52 [] @texttt size_type variant() const { return base::data( ).variant(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 53--53 [] @texttt coordinate_type coordinate_system() const { return base::data( ).coordinate_system(); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 54--54 [] @texttt std::string coordinate_system_name() const { return space_const ant::coordinate_system_name(coordinate_system()); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 55--55 [] @texttt const basis_basic& get_piola_basis() const { return base::dat a().get_piola_basis(); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 56--56 [] @texttt size_type order() const { return base::data( ).get_piola_basis().degree(); }[] [62] Overfull \hbox (49.43388pt too wide) in paragraph at lines 57--57 [] @texttt const node_type& xmin() const { return base::data( ).xmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 58--58 [] @texttt const node_type& xmax() const { return base::data( ).xmax(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 59--59 [] @texttt const T& hmin() const { return base::data( ).hmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 60--60 [] @texttt const T& hmax() const { return base::data( ).hmax(); }[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 61--61 [] @texttt const distributor& geo_element_ownership(size_type dim) const { return base::data().geo_element_ownership(dim); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 62--62 [] @texttt const geo_size& sizes() const { return base::da ta().sizes(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 63--63 [] @texttt const geo_size& ios_sizes() const { return base::da ta().ios_sizes(); }[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 64--64 [] @texttt const_reference get_geo_element (size_type dim, size_type ige) c onst { return base::data().get_geo_element (dim, ige); }[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 65--65 [] @texttt reference get_geo_element (size_type dim, size_type ige) { return base::data().get_geo_element (dim, ige); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 66--66 [] @texttt const_reference dis_get_geo_element (size_type dim, size_type di s_ige) const[] Overfull \hbox (331.11958pt too wide) in paragraph at lines 68--68 [] @texttt const geo_element& bgd2dom_geo_element (const geo_element& bgd_K ) const { return base::data().bgd2dom_geo_element (bgd_K); }[] Overfull \hbox (331.11958pt too wide) in paragraph at lines 69--69 [] @texttt const geo_element& dom2bgd_geo_element (const geo_element& dom_K ) const { return base::data().dom2bgd_geo_element (dom_K); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 71--71 [] @texttt return base::data().neighbour (ie, loc_isi d); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 74--74 [] @texttt const node_type& node(size_type inod) const { return bas e::data().node(inod); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 75--75 [] @texttt const node_type& dis_node(size_type dis_inod) const { return bas e::data().dis_node(dis_inod); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 76--76 [] @texttt void dis_inod (const geo_element& K, std::vector& dis _inod) const {[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 78--78 [] @texttt node_type piola (const geo_element& K, const node_type& hat_x) c onst { return base::data().piola (K, hat_x); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 79--79 [] @texttt const disarray& get_nodes() const { return base::data().get_nodes(); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 80--80 [] @texttt size_type dis_inod2dis_iv (size_type dis_inod) const { return ba se::data().dis_inod2dis_iv(dis_inod); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 82--82 [] @texttt size_type n_domain_indirect () const { return base::data().n_dom ain_indirect (); }[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 83--83 [] @texttt bool have_domain_indirect (const std::string& name) const { retu rn base::data().have_domain_indirect (name); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 84--84 [] @texttt const domain_indirect_basic& get_domain_indirect (si ze_type i) const {[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 86--86 [] @texttt const domain_indirect_basic& get_domain_indirect (co nst std::string& name) const {[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 88--88 [] @texttt void insert_domain_indirect (const domain_indirect_basic& dom) const {[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 91--91 [] @texttt size_type n_domain () const { return base::data().n_domain_indir ect (); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 100--100 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 104--104 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] [63] Overfull \hbox (95.42339pt too wide) in paragraph at lines 114--114 [] @texttt { return base::data().seq_tr ace_move (x,v,y); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 119--119 [] @texttt { return base::data().dis_tr ace_move (x,v,y); }[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 125--125 [] @texttt { return base::data().trace_ ray_boundary (x,v,dis_ie,y); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 131--131 [] @texttt { return base::data().trace_ move (x,v,dis_ie,y); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 135--135 [] @texttt { return base::data().seq_ne arest (x, x_nearest); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 139--139 [] @texttt { return base::data().dis_ne arest (x, x_nearest); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 142--142 [] @texttt disarray,sequential>& x_nea rest,[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 143--143 [] @texttt disarray& dis_i e) const[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 144--144 [] @texttt { base::data().nearest (x, x _nearest, dis_ie); }[] Overfull \hbox (388.60646pt too wide) in paragraph at lines 153--153 [] @texttt void set_coordinate_system (std::string sys_coord_name) { set_co ordinate_system (space_constant::coordinate_system(sys_coord_name)); }[] [64] Overfull \hbox (66.67995pt too wide) in paragraph at lines 155--155 [] @texttt void build_by_subdividing (const geo_basic& omega, size_type k);[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 157--157 [] @texttt const geo_header& hdr,[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 158--158 [] @texttt const disarray& node,[] Overfull \hbox (469.08809pt too wide) in paragraph at lines 159--159 [] @texttt std::array >,sequential, heap_allocator >, reference_element::max_vari ant>&[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 160--160 [] @tex ttt tmp_geo_element,[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 165--165 [] @texttt const communicator& comm() const { return geo_element_own ership (0).comm(); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 166--166 [] @texttt size_type size(size_type dim) const { return base::data().ge o_element_ownership(dim).size(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 167--167 [] @texttt size_type dis_size(size_type dim) const { return base::data().ge o_element_ownership(dim).dis_size(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 168--168 [] @texttt size_type size() const { return size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 169--169 [] @texttt size_type dis_size() const { return dis_size (map_d imension()); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 172--172 [] @texttt const_reference operator[] (size_type ie) const { return get_geo _element (map_dimension(), ie); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 173--173 [] @texttt reference operator[] (size_type ie) { return get_geo _element (map_dimension(), ie); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 174--174 [] @texttt const_iterator begin (size_type dim) const { return base::data() .begin(dim); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 175--175 [] @texttt const_iterator end (size_type dim) const { return base::data() .end (dim); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 176--176 [] @texttt const_iterator begin () const { return begin(map_di mension()); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 177--177 [] @texttt const_iterator end () const { return end (map_di mension()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 179--179 [] @texttt const_iterator_by_variant begin_by_variant (variant_type variant ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 181--181 [] @texttt const_iterator_by_variant end_by_variant (variant_type variant ) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 184--184 [] @texttt const geo_basic& get_background_geo() const; // co de in geo_domain.h[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 189--189 [] @texttt size_type ige2ios_dis_ige (size_type dim, size_type ige) const { return ige; }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 190--190 [] @texttt size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const { return dis_ige; }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 191--191 [] @texttt size_type ios_ige2dis_ige (size_type dim, size_type ios_ige) con st { return ios_ige; }[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 195--195 [] @texttt bool operator== (const geo_basic& omega2) const { return base::data().operator== (omega2.data()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 202--202 [] @texttt void dump (std::string name) const { base::data().dump (n ame); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 203--203 [] @texttt bool check (bool verbose = true) const { return base::data().che ck(verbose); }[] [65] Overfull \hbox (141.41289pt too wide) in paragraph at lines 209--209 []@texttt class geo_basic : public smart_pointer_clone > {[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 227--227 [] @texttt typedef typename rep::const_iterator_by_variant const_iterator_b y_variant;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 233--233 [] @texttt geo_basic (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 234--234 [] @texttt void load (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 235--235 [] @texttt geo_basic (const domain_indirect_basic& dom, const geo_basic& omega);[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 240--240 [] @texttt const disarray,distributed>& node_list,[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 241--241 [] @texttt const std::array >,distributed>,[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 247--247 [] @texttt std::string name() const { return base::data( ).name(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 248--248 [] @texttt std::string familyname() const { return base::data( ).familyname(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 249--249 [] @texttt size_type dimension() const { return base::data( ).dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 250--250 [] @texttt size_type map_dimension() const { return base::data( ).map_dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 251--251 [] @texttt size_type serial_number() const { return base::data( ).serial_number(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 252--252 [] @texttt size_type variant() const { return base::data( ).variant(); }[] [66] Overfull \hbox (124.16682pt too wide) in paragraph at lines 253--253 [] @texttt coordinate_type coordinate_system() const { return base::data( ).coordinate_system(); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 254--254 [] @texttt std::string coordinate_system_name() const { return space_const ant::coordinate_system_name(coordinate_system()); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 255--255 [] @texttt const basis_basic& get_piola_basis() const { return base::dat a().get_piola_basis(); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 256--256 [] @texttt size_type order() const { return base::data( ).get_piola_basis().degree(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 257--257 [] @texttt const node_type& xmin() const { return base::data( ).xmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 258--258 [] @texttt const node_type& xmax() const { return base::data( ).xmax(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 259--259 [] @texttt const T& hmin() const { return base::data( ).hmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 260--260 [] @texttt const T& hmax() const { return base::data( ).hmax(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 262--262 [] @texttt { return base::data().geo_element_ownership (dim); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 263--263 [] @texttt const geo_size& sizes() const { return base::da ta().sizes(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 264--264 [] @texttt const geo_size& ios_sizes() const { return base::da ta().ios_sizes(); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 267--267 [] @texttt const_reference dis_get_geo_element (size_type dim, size_type di s_ige) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 268--268 [] @texttt { return base::data().dis_get_geo_element (dim, dis_ ige); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 269--269 [] @texttt const geo_element& bgd2dom_geo_element (const geo_element& bgd_K ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 271--271 [] @texttt const geo_element& dom2bgd_geo_element (const geo_element& dom_K ) const[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 274--274 [] @texttt return base::data().neighbour (ie, loc_isi d); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 280--280 [] @texttt size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const {[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 285--285 [] @texttt const node_type& node(size_type inod) const { return bas e::data().node(inod); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 286--286 [] @texttt const node_type& dis_node(size_type dis_inod) const { return bas e::data().dis_node(dis_inod); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 287--287 [] @texttt void dis_inod (const geo_element& K, std::vector& dis _inod) const {[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 289--289 [] @texttt node_type piola (const geo_element& K, const node_type& hat_x) c onst { return base::data().piola (K, hat_x); }[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 290--290 [] @texttt const disarray& get_nodes() const { retur n base::data().get_nodes(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 292--292 [] @texttt size_type n_domain_indirect () const { return base::data().n_dom ain_indirect (); }[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 293--293 [] @texttt bool have_domain_indirect (const std::string& name) const { retu rn base::data().have_domain_indirect (name); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 294--294 [] @texttt const domain_indirect_basic& get_domain_indirect (s ize_type i) const {[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 296--296 [] @texttt const domain_indirect_basic& get_domain_indirect (c onst std::string& name) const {[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 298--298 [] @texttt void insert_domain_indirect (const domain_indirect_basic& dom) const {[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 301--301 [] @texttt size_type n_domain () const { return base::data().n_domain_indir ect (); }[] [67] Overfull \hbox (83.92601pt too wide) in paragraph at lines 310--310 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 314--314 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (239.14058pt too wide) in paragraph at lines 316--316 [] @texttt void locate (const disarray, distributed>& x, dis array& dis_ie) const[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 322--322 [] @texttt { return base::data().seq_tr ace_move (x,v,y); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 327--327 [] @texttt { return base::data().dis_tr ace_move (x,v,y); }[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 333--333 [] @texttt { return base::data().trace_ ray_boundary (x,v,dis_ie,y); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 339--339 [] @texttt { return base::data().trace_ move (x,v,dis_ie,y); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 343--343 [] @texttt { return base::data().seq_ne arest (x, x_nearest); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 347--347 [] @texttt { return base::data().dis_ne arest (x, x_nearest); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 350--350 [] @texttt disarray,distributed>& x_ne arest,[] [68] Overfull \hbox (37.93651pt too wide) in paragraph at lines 351--351 [] @texttt disarray& dis_ ie) const[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 352--352 [] @texttt { base::data().nearest (x, x _nearest, dis_ie); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 357--357 [] @texttt size_type dis_inod2dis_iv (size_type dis_inod) const { return ba se::data().dis_inod2dis_iv(dis_inod); }[] Overfull \hbox (388.60646pt too wide) in paragraph at lines 359--359 [] @texttt void set_coordinate_system (std::string sys_coord_name) { set_co ordinate_system (space_constant::coordinate_system(sys_coord_name)); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 363--363 [] @texttt void build_by_subdividing (const geo_basic& omega , size_type k);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 367--367 [] @texttt size_type size(size_type dim) const { return base::data().ge o_element_ownership(dim).size(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 368--368 [] @texttt size_type dis_size(size_type dim) const { return base::data().ge o_element_ownership(dim).dis_size(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 369--369 [] @texttt const communicator& comm() const { return geo_element_own ership (0).comm(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 370--370 [] @texttt size_type size() const { return size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 371--371 [] @texttt size_type dis_size() const { return dis_size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 377--377 [] @texttt const_iterator begin (size_type dim) const { return base::data() .begin(dim); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 378--378 [] @texttt const_iterator end (size_type dim) const { return base::data() .end (dim); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 379--379 [] @texttt const_iterator begin () const { return begin(map_di mension()); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 380--380 [] @texttt const_iterator end () const { return end (map_di mension()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 382--382 [] @texttt const_iterator_by_variant begin_by_variant (variant_type variant ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 384--384 [] @texttt const_iterator_by_variant end_by_variant (variant_type variant ) const[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 387--387 [] @texttt const geo_basic& get_background_geo() const; // c ode in geo_domain.h[] Overfull \hbox (273.6327pt too wide) in paragraph at lines 392--392 [] @texttt bool operator== (const geo_basic& omega2) const { return base::data().operator== (omega2.data()); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 396--396 [] @texttt odiststream& put (odiststream& ops) const { return base::data(). put (ops); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 399--399 [] @texttt bool check (bool verbose = true) const { return base::data().che ck(verbose); }[] [69] Overfull \hbox (66.67995pt too wide) in paragraph at lines 404--404 [] @texttt std::array& loc_nd of_by_variant,[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 405--405 [] @texttt disarray& idof2i os_dis_idof) const[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 406--406 [] @texttt { base::data().set_ios_permutation (loc_ndof_by_variant, idof2i os_dis_idof); }[] ) (../../nfem/plib/space.2texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 28--28 []@texttt class space_basic : public smart_pointer > {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 40--40 [] @texttt space_basic (const geo_basic& omega = (geo_basic()),[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt std::string approx = "", std::string valued = "sca lar");[] [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 63--63 [] @texttt space_component_const operator[] (size_type i_comp ) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 69--69 [] @texttt void dis_idof (const geo_element& K, std::vector& dis _idof) const;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 90--90 [] @texttt point_basic vector_momentum (const Function& f, size_type ido f) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [] @texttt tensor_basic tensor_momentum (const Function& f, size_type id of) const;[] [71] Overfull \hbox (55.18257pt too wide) in paragraph at lines 96--96 [] @texttt const space_basic& Wh, const std::string& dom_ name) const;[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 99--99 [] @texttt const space_basic& Wh, const geo_basic& bgd_gamma) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 101--101 [] @texttt const std::set& ext_iu_set() const { return base::dat a().ext_iu_set(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 102--102 [] @texttt const std::set& ext_ib_set() const { return base::dat a().ext_ib_set(); }[] Overfull \hbox (227.6432pt too wide) in paragraph at lines 106--106 [] @texttt bool operator== (const space_basic& V2) const { re turn base::data().operator==(V2.data()); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 107--107 [] @texttt bool operator!= (const space_basic& V2) const { re turn ! operator== (V2); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 108--108 [] @texttt friend bool are_compatible (const space_basic& V1, const space_basic& V2) {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 115--115 []@texttt class space_basic : public smart_pointer > {[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 127--127 [] @texttt space_basic (const geo_basic& omega = (geo_basic< T,distributed>()),[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 128--128 [] @texttt std::string approx = "", std::string valued = "sca lar");[] [72] Overfull \hbox (37.93651pt too wide) in paragraph at lines 150--150 [] @texttt space_component_const operator[] (size_type i_com p) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 156--156 [] @texttt void dis_idof (const geo_element& K, std::vector& dis _idof) const;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 178--178 [] @texttt point_basic vector_momentum (const Function& f, size_type ido f) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 181--181 [] @texttt tensor_basic tensor_momentum (const Function& f, size_type id of) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 184--184 [] @texttt const space_basic& Wh, const std::string& dom _name) const;[] Overfull \hbox (141.41289pt too wide) in paragraph at lines 187--187 [] @texttt const space_basic& Wh, const geo_basic& bgd_gamma) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 189--189 [] @texttt const std::set& ext_iu_set() const { return base::dat a().ext_iu_set(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 190--190 [] @texttt const std::set& ext_ib_set() const { return base::dat a().ext_ib_set(); }[] [73] Overfull \hbox (233.39189pt too wide) in paragraph at lines 194--194 [] @texttt bool operator== (const space_basic& V2) const { r eturn base::data().operator==(V2.data()); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 195--195 [] @texttt bool operator!= (const space_basic& V2) const { r eturn ! operator== (V2); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 196--196 [] @texttt friend bool are_compatible (const space_basic& V1 , const space_basic& V2) {[] ) (../../nfem/plib/test.2texi) (../../nfem/geo_element/point.2texi [74] Overfull \hbox (32.18782pt too wide) in paragraph at lines 27--27 [] @texttt explicit point_basic () { _x[0] = T(); _x[1] = T(); _x[2] = T(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 41--41 [] @texttt { _x[0] = p._x[0]; _x[1] = p._x[1]; _x[2] = p._x[2]; return *this; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 49--49 [] @texttt T& operator[](int i_coord) { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 50--50 [] @texttt const T& operator[](int i_coord) const { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 51--51 [] @texttt T& operator()(int i_coord) { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 52--52 [] @texttt const T& operator()(int i_coord) const { return _x[i_coord% 3]; }[] [75] Overfull \hbox (26.43913pt too wide) in paragraph at lines 79--79 [] @texttt { return _x[0] == v[0] && _x[1] == v[1] && _x[2] == v[2]; }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 85--85 [] @texttt { _x[0] += v[0]; _x[1] += v[1]; _x[2] += v[2]; retur n *this; }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 88--88 [] @texttt { _x[0] -= v[0]; _x[1] -= v[1]; _x[2] -= v[2]; retur n *this; }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 97--97 [] @texttt { return point_basic (_x[0]+v[0], _x[1]+v[1], _x[ 2]+v[2]); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 103--103 [] @texttt { return point_basic (_x[0]-v[0], _x[1]-v[1], _x[ 2]-v[2]); }[] [76] Overfull \hbox (49.43388pt too wide) in paragraph at lines 116--116 [] @texttt { return point_basic (_x[0]/v[0], _x[1]/v[1], _x[ 2]/v[2]); }[] [77] Overfull \hbox (72.42863pt too wide) in paragraph at lines 191--191 []@texttt T mixt (const point_basic& u, const point_basic& v, const poin t_basic& w);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 193--193 []@texttt // robust(exact) floating point predicates: return the sign of the v alue as (0, > 0, < 0)[] [78] Overfull \hbox (14.94176pt too wide) in paragraph at lines 231--231 []@texttt lexicographically_less (const point_basic& a, const point_basic& b)[] ) (../../nfem/geo_element/quadrature_option_type.2texi [79] Overfull \hbox (14.94176pt too wide) in paragraph at lines 49--49 [] @texttt quadrature_option_type& operator= (const quadrature_option_type& q opt);[] ) (../../nfem/geo_element/tensor.2texi [80] Overfull \hbox (66.67995pt too wide) in paragraph at lines 34--34 [] @texttt tensor_basic (const std::initializer_list >& il);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [] @texttt void set_row (const point_basic& r, size_t i, size_t d = 3);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 47--47 [] @texttt void set_column (const point_basic& c, size_t j, size_t d = 3);[] [81] Overfull \hbox (83.92601pt too wide) in paragraph at lines 66--66 [] @texttt bool operator!= (const tensor_basic& b) const { return ! operator== (b); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 85--85 [] @texttt // where q=(q1,q2,q3) are eigenvectors in rows (othonormal m atrix)[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 86--86 [] @texttt // and d=(d1,d2,d3) are eigenvalues, sorted in decreasing order d1 >= d2 >= d3[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 94--94 [] @texttt // where u=(u1,u2,u3) are left pseudo-eigenvectors in rows ( othonormal matrix)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 95--95 [] @texttt // v=(v1,v2,v3) are right pseudo-eigenvectors in rows (othonormal matrix)[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 96--96 [] @texttt // and s=(s1,s2,s3) are eigenvalues, sorted in decreasing order s1 >= s2 >= s3[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 98--98 [] @texttt point_basic svd (tensor_basic& u, tensor_basic& v, size_t dim = 3) const;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 108--108 []@texttt point_basic operator* (const point_basic& yt, const tensor_ba sic& a);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 112--112 []@texttt void prod (const tensor_basic& a, const tensor_basic& b, tenso r_basic& result,[] [82] Overfull \hbox (89.6747pt too wide) in paragraph at lines 121--121 []@texttt tensor_basic otimes (const point_basic& u, const point_basic& v, size_t d=3);[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 152--152 []@texttt void cumul_otimes (tensor_basic& t, const point_basic& a, cons t point_basic& b, size_t na = 3);[] Overfull \hbox (233.39189pt too wide) in paragraph at lines 154--154 []@texttt void cumul_otimes (tensor_basic& t, const point_basic& a, cons t point_basic& b, size_t na, size_t nb);[] ) (../../nfem/geo_element/tensor3.2texi [83] Overfull \hbox (14.94176pt too wide) in paragraph at lines 39--39 [] @texttt tensor3_basic& operator/= (const T& k) { return operator*= (1./ k); }[] ) (../../nfem/geo_element/tensor4.2texi [84] Overfull \hbox (14.94176pt too wide) in paragraph at lines 30--30 [] @texttt tensor4_basic (const std::initializer_list > > >& il);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt T& operator()(size_type i, size_type j, size_type k, size_ty pe l);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 42--42 [] @texttt const T& operator()(size_type i, size_type j, size_type k, size_ty pe l) const;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 50--50 [] @texttt tensor4_basic& operator/= (const T& k) { return operator*= (1./ k); }[] [85]) (../../skit/plib2/asr.2texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 14--14 []@texttt template >[] [86] Overfull \hbox (37.93651pt too wide) in paragraph at lines 25--25 [] @texttt dis_reference (typename base::dis_reference row_dis_i, size_ty pe dis_j)[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 39--39 [] @texttt : base(distributor(), row_type(alloc), alloc), _col_ownership( ), _nnz(0), _dis_nnz(0) {}[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 41--41 [] @texttt asr (const distributor& row_ownership, const distributor& col_ow nership, const A& alloc = A())[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 42--42 [] @texttt : base(row_ownership, row_type(alloc), alloc), _col_ownership( col_ownership), _nnz(0), _dis_nnz(0) {}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 48--48 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 66--66 [] @texttt const distributor& row_ownership() const { return base::ownershi p(); }[] [87] Overfull \hbox (66.67995pt too wide) in paragraph at lines 75--75 [] @texttt // dis_entry_assembly_end is redefined in order to recompute _nn z and _dis_nnz[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 76--76 [] @texttt void dis_entry_assembly_begin() { base::dis_entry_assembly_begin (pair_set_add_op()); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 77--77 [] @texttt void dis_entry_assembly_end() { base::dis_entry_assembly_end (pair_set_add_op()); _recompute_nnz(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 78--78 [] @texttt void dis_entry_assembly() { dis_entry_assembly_begin(); di s_entry_assembly_end(); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 86--86 [] @texttt odiststream& put_seq (odiststream& ops, size_type first_dis_i = 0) const;[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 87--87 [] @texttt odiststream& put_seq_sparse_matlab (odiststream& ops, size_type first_dis_i = 0) const;[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 88--88 [] @texttt odiststream& put_seq_matrix_market (odiststream& ops, size_type first_dis_i = 0) const;[] ) (../../skit/plib2/csr.2texi [88] Overfull \hbox (26.43913pt too wide) in paragraph at lines 46--46 [] @texttt explicit csr(const asr& a) : base(new_macro(rep( a))) {}[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 47--47 [] @texttt void resize (size_type loc_nrow1 = 0, size_type loc_ncol1 = 0, s ize_type loc_nnz1 = 0)[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 49--49 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership, size_type nnz1 = 0)[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 55--55 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 56--56 [] @texttt csr (const std::initializer_list > & init_list);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 62--62 [] @texttt const distributor& row_ownership() const { return base::data().r ow_ownership(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 63--63 [] @texttt const distributor& col_ownership() const { return base::data().c ol_ownership(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 64--64 [] @texttt size_type dis_nrow () const { return row_ownership( ).dis_size(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 65--65 [] @texttt size_type dis_ncol () const { return col_ownership( ).dis_size(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 66--66 [] @texttt size_type dis_nnz () const { return base::data().n nz(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 68--68 [] @texttt bool is_symmetric() const { return base::data().i s_symmetric(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 69--69 [] @texttt void set_symmetry (bool is_symm) const { base::data().set_symm etry(is_symm); }[] [89] Overfull \hbox (95.42339pt too wide) in paragraph at lines 70--70 [] @texttt void set_symmetry_by_check (const T& tol = std::numeric_limits::epsilon()) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 71--71 [] @texttt { base::data().set_symm etry_by_check(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 72--72 [] @texttt bool is_definite_positive() const { return base::data().i s_definite_positive(); }[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 73--73 [] @texttt void set_definite_positive (bool is_defpos) const { base::data() .set_definite_positive(is_defpos); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 74--74 [] @texttt size_type pattern_dimension() const { return base::data().p attern_dimension(); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 75--75 [] @texttt void set_pattern_dimension(size_type dim) const { base::data().s et_pattern_dimension(dim); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 76--76 [] @texttt T max_abs () const { return base::data().m ax_abs(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 79--79 [] @texttt size_type nrow () const { return base::data().n row(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 80--80 [] @texttt size_type ncol () const { return base::data().n col(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 81--81 [] @texttt size_type nnz () const { return base::data().n nz(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 84--84 [] @texttt size_type row_first_index () const { return base::data().r ow_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 85--85 [] @texttt size_type row_last_index () const { return base::data().r ow_last_index(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 86--86 [] @texttt size_type col_first_index () const { return base::data().c ol_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 87--87 [] @texttt size_type col_last_index () const { return base::data().c ol_last_index(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 89--89 [] @texttt const_iterator begin() const { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 90--90 [] @texttt const_iterator end() const { return base::data().e nd(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 91--91 [] @texttt iterator begin_nonconst() { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 92--92 [] @texttt iterator end_nonconst() { return base::data().e nd(); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 96--96 [] @texttt const_iterator ext_begin() const { return const_iterator (); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 97--97 [] @texttt const_iterator ext_end() const { return const_iterator (); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 105--105 [] @texttt void mult (const vec& x, vec& y) const {[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 108--108 [] @texttt vec operator* (const vec& x) const {[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 113--113 [] @texttt void trans_mult (const vec& x, vec& y) const {[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 116--116 [] @texttt vec trans_mult (const vec& x) const {[] [90] Overfull \hbox (20.69044pt too wide) in paragraph at lines 133--133 [] @texttt void dump (const std::string& name) const { base::data().dump(na me); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 167--167 []@texttt class csr : public smart_pointer > {[] [91] Overfull \hbox (32.18782pt too wide) in paragraph at lines 186--186 [] @texttt explicit csr(const asr& a) : base(new_macro(rep (a))) {}[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 187--187 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership, size_type nnz1 = 0)[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 193--193 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 194--194 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 200--200 [] @texttt const distributor& row_ownership() const { return base::data().r ow_ownership(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 201--201 [] @texttt const distributor& col_ownership() const { return base::data().c ol_ownership(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 202--202 [] @texttt size_type dis_nrow () const { return row_ownership( ).dis_size(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 203--203 [] @texttt size_type dis_ncol () const { return col_ownership( ).dis_size(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 204--204 [] @texttt size_type dis_nnz () const { return base::data().d is_nnz(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 205--205 [] @texttt size_type dis_ext_nnz () const { return base::data().d is_ext_nnz(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 206--206 [] @texttt bool is_symmetric() const { return base::data().i s_symmetric(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 207--207 [] @texttt void set_symmetry (bool is_symm) const { base::data().set_symm etry(is_symm); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 208--208 [] @texttt void set_symmetry_by_check (const T& tol = std::numeric_limits::epsilon()) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 209--209 [] @texttt { base::data().set_symm etry_by_check(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 210--210 [] @texttt bool is_definite_positive() const { return base::data().i s_definite_positive(); }[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 211--211 [] @texttt void set_definite_positive (bool is_defpos) const { base::data() .set_definite_positive(is_defpos); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 212--212 [] @texttt size_type pattern_dimension() const { return base::data().p attern_dimension(); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 213--213 [] @texttt void set_pattern_dimension(size_type dim) const { base::data().s et_pattern_dimension(dim); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 214--214 [] @texttt T max_abs () const { return base::data().m ax_abs(); }[] [92] Overfull \hbox (32.18782pt too wide) in paragraph at lines 217--217 [] @texttt size_type nrow () const { return base::data().n row(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 218--218 [] @texttt size_type ncol () const { return base::data().n col(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 219--219 [] @texttt size_type nnz () const { return base::data().n nz(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 222--222 [] @texttt size_type row_first_index () const { return base::data().r ow_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 223--223 [] @texttt size_type row_last_index () const { return base::data().r ow_last_index(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 224--224 [] @texttt size_type col_first_index () const { return base::data().c ol_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 225--225 [] @texttt size_type col_last_index () const { return base::data().c ol_last_index(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 227--227 [] @texttt const_iterator begin() const { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 228--228 [] @texttt const_iterator end() const { return base::data().e nd(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 229--229 [] @texttt iterator begin_nonconst() { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 230--230 [] @texttt iterator end_nonconst() { return base::data().e nd(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 233--233 [] @texttt size_type ext_nnz() const { return base::data().e xt_nnz(); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 234--234 [] @texttt const_iterator ext_begin() const { return base::data().e xt_begin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 235--235 [] @texttt const_iterator ext_end() const { return base::data().e xt_end(); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 236--236 [] @texttt iterator ext_begin_nonconst() { return base::data().e xt_begin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 237--237 [] @texttt iterator ext_end_nonconst() { return base::data().e xt_end(); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 238--238 [] @texttt size_type jext2dis_j (size_type jext) const { return base::data( ).jext2dis_j(jext); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 244--244 [] @texttt void mult (const vec& x, vec& y) const {[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 247--247 [] @texttt vec operator* (const vec& x) const {[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 252--252 [] @texttt void trans_mult (const vec& x, vec& y) const {[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 255--255 [] @texttt vec trans_mult (const vec& x) const {[] [93] Overfull \hbox (20.69044pt too wide) in paragraph at lines 272--272 [] @texttt void dump (const std::string& name) const { base::data().dump(na me); }[] [94]) (../../skit/plib2/dia.2texi [95]) (../../skit/plib2/disarray.2texi [96] [97] Overfull \hbox (89.6747pt too wide) in paragraph at lines 86--86 []@texttt class disarray : public smart_pointer > {[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 107--107 [] @texttt disarray (size_type loc_size = 0, const T& init_val = T(), const A& alloc = A());[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 109--109 [] @texttt disarray (const distributor& ownership, const T& init_val = T(), const A& alloc = A());[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 114--114 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 116--116 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 117--117 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 120--120 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 121--121 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 122--122 [] @texttt reference operator() (size_type i) { return base::da ta().operator[] (i); }[] [98] Overfull \hbox (112.66945pt too wide) in paragraph at lines 123--123 [] @texttt const_reference operator() (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 124--124 [] @texttt const_reference dis_at (size_type dis_i) const { return operator [] (dis_i); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 133--133 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::data(). dis_entry(dis_i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 146--146 [] @texttt template void set_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 147--147 [] @texttt template void append_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (216.14583pt too wide) in paragraph at lines 148--148 [] @texttt template void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const {}[] Overfull \hbox (216.14583pt too wide) in paragraph at lines 149--149 [] @texttt template void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const {}[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 154--154 [] @texttt void repartition ( // old_numberin g for *this[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 156--156 [] @texttt disarray& new_disarray, // new_ownershi p (created)[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 159--159 [] @texttt { return base::data().repartition (partition, new_disarray, old_numbering, new_numbering); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 162--162 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 164--164 [] @texttt disarray& new_disarray) const // new_owne rship (already allocated)[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 165--165 [] @texttt { return base::data().permutation_apply (new_numbering, new_ disarray); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 167--167 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 168--168 [] @texttt disarray& inew2dis_iold) const // new_ownership[] [99] Overfull \hbox (129.91551pt too wide) in paragraph at lines 173--173 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 174--174 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 176--176 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 178--178 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 179--179 [] @texttt void dump (std::string name) const { return base::data().dump(na me); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 185--185 []@texttt class disarray : public smart_pointer > {[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 206--206 [] @texttt disarray (const distributor& ownership = distributor(), co nst T& init_val = T(), const A& alloc = A());[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 207--207 [] @texttt void resize (const distributor& ownership = distributor(), const T& init_val = T());[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 211--211 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 213--213 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 214--214 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 217--217 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 218--218 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 219--219 [] @texttt reference operator() (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 220--220 [] @texttt const_reference operator() (size_type i) const { return base::da ta().operator[] (i); }[] [100] Overfull \hbox (377.10909pt too wide) in paragraph at lines 230--230 [] @texttt void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().append_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (359.86302pt too wide) in paragraph at lines 233--233 [] @texttt void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().get_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 236--236 [] @texttt void append_dis_indexes (const Set& ext_idx_set) const { base::d ata().append_dis_indexes (ext_idx_set); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 240--240 [] @texttt void set_dis_indexes (const Set& ext_idx_set) const { base::d ata().set_dis_indexes (ext_idx_set); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 242--242 [] @texttt const T& dis_at (size_type dis_i) const { return base::data().di s_at (dis_i); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 245--245 [] @texttt const scatter_map_type& get_dis_map_entries() const { return bas e::data().get_dis_map_entries(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 249--249 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::data(). dis_entry(dis_i); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 252--252 [] @texttt void dis_entry_assembly_begin (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly_begin (my_set_op); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 254--254 [] @texttt void dis_entry_assembly_end (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly_end (my_set_op); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 256--256 [] @texttt void dis_entry_assembly (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly (my_set_op); }[] Overfull \hbox (302.37614pt too wide) in paragraph at lines 258--258 [] @texttt void dis_entry_assembly_begin() { base::data().template dis_entr y_assembly_begin::type>(); }[] Overfull \hbox (290.87877pt too wide) in paragraph at lines 259--259 [] @texttt void dis_entry_assembly_end() { base::data().template dis_entr y_assembly_end::type>(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 260--260 [] @texttt void dis_entry_assembly() { dis_entry_assembly_begin(); di s_entry_assembly_end(); }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 265--265 [] @texttt void repartition ( // old_numbering for *this[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 267--267 [] @texttt disarray& new_disarray, // new_own ership (created)[] [101] Overfull \hbox (331.11958pt too wide) in paragraph at lines 270--270 [] @texttt { return base::data().repartition (partition.data(), new_dis array.data(), old_numbering.data(), new_numbering.data()); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 273--273 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 275--275 [] @texttt disarray& new_disarray) const // new_owne rship (already allocated)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 276--276 [] @texttt { base::data().permutation_apply (new_numbering.data(), new_ disarray.data()); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 278--278 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 279--279 [] @texttt disarray& inew2dis_iold) const // new_ownership[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 284--284 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 285--285 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 286--286 [] @texttt void dump (std::string name) const { return base::data().du mp(name); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 289--289 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 291--291 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 292--292 [] @texttt template odiststream& permuted_put _values ([] Overfull \hbox (239.14058pt too wide) in paragraph at lines 293--293 [] @texttt odiststream& ops, const disarray& perm, PutFunction put_element) const[] Overfull \hbox (428.84727pt too wide) in paragraph at lines 294--294 [] @texttt { return base::data().permuted_put_values (ops, perm.data(), put_element); }[] ) (../../skit/plib2/distributor.2texi [102] Overfull \hbox (14.94176pt too wide) in paragraph at lines 54--54 [] @texttt /// find iproc associated to a global index dis_i: CPU=log(n proc)[] [103]) (../../skit/plib2/diststream.2texi [104] Overfull \hbox (95.42339pt too wide) in paragraph at lines 81--81 [] @texttt io::mode_type mode = io::out, const communicator& comm = communicator());[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 83--83 [] @texttt io::mode_type mode, const communicator& comm = communi cator());[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 84--84 [] @texttt odiststream (std::string filename, std::string suffix, const commu nicator& comm);[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 86--86 [] @texttt odiststream(std::ostream& os, const communicator& comm = communica tor());[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 92--92 [] @texttt io::mode_type mode = io::out, const communicator& comm = communicator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 94--94 [] @texttt io::mode_type mode, const communicator& comm = communic ator());[] [105] Overfull \hbox (32.18782pt too wide) in paragraph at lines 129--129 [] @texttt idiststream (std::istream& is, const communicator& comm = communic ator());[] [106]) (../../skit/plib2/environment.2texi) (../../skit/plib2/eye.2texi) (../../skit/plib2/solver.2texi [107] [108] Overfull \hbox (158.65895pt too wide) in paragraph at lines 104--104 [] @texttt explicit solver_basic (const csr& a, const solver_option_type & opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 117--117 []@texttt solver_basic ldlt(const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 119--119 []@texttt solver_basic lu (const csr& a, const solver_option_type& opt = solver_option_type());[] [109] Overfull \hbox (147.16158pt too wide) in paragraph at lines 126--126 []@texttt solver_basic ic0 (const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 128--128 []@texttt solver_basic ilu0(const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 130--130 []@texttt solver_basic ldlt_seq(const csr& a, const solver_option_ty pe& opt = solver_option_type());[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 132--132 []@texttt solver_basic lu_seq (const csr& a, const solver_option_ty pe& opt = solver_option_type());[] ) (../../skit/plib2/solver_abtb.2texi [110] Overfull \hbox (43.6852pt too wide) in paragraph at lines 66--66 [] @texttt solver_abtb_basic (const csr& a, const csr& b, const csr & mp,[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 69--69 [] @texttt solver_abtb_basic (const csr& a, const csr& b, const csr & c, const csr& mp,[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 75--75 [] @texttt void solve (const vec& f, const vec& g, vec& u, vec & p) const;[] [111]) (../../skit/plib2/solver_option_type.2texi Overfull \hbox (158.65895pt too wide) in paragraph at lines 19--19 [] @texttt static const long int decide = -1; // indicate the solver will try to choose the best method[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 23--23 [] @texttt mutable long int iterative; // indicate if we want to u se iterative solver[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 24--24 [] @texttt Float tol; // tolerance when using ite rative methode[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 25--25 [] @texttt size_type max_iter; // maximum number of iterat ion when using iterative method[] Overfull \hbox (319.62221pt too wide) in paragraph at lines 26--26 [] @texttt size_type n_refinement; // number of iterative refi nement, when using direct method (umfpack only support it)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 27--27 [] @texttt bool compute_determinant; // compute also det, when using direct method[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28--28 [] @texttt std::string prefered_library; // e.g. "umfpack", when ava ilable[] Overfull \hbox (371.3604pt too wide) in paragraph at lines 31--31 [] @texttt bool force_seq; // (still buggy; when using direct) restrict to diagonal blocs per process (e.g. mumps solver)[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 32--32 [] @texttt size_type level_of_fill; // (in development) Level o f fill [1:5] for incomplete factorisation[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 33--33 [] @texttt size_type amalgamation; // (in development) Level o f amalgamation [10:70] for Kass[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 34--34 [] @texttt size_type ooc; // (in development) out-of- core limit (Mo/percent depending on compilation options)[] [112]) (../../skit/plib2/vec.2texi Overfull \hbox (37.93651pt too wide) in paragraph at lines 33--33 [] @texttt typedef std::ptrdiff_t differe nce_type;[] [113] Overfull \hbox (37.93651pt too wide) in paragraph at lines 36--36 [] @texttt typedef typename base::const_reference const_r eference;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 38--38 [] @texttt typedef typename base::const_iterator const_i terator;[] [114] Overfull \hbox (14.94176pt too wide) in paragraph at lines 105--105 [] @texttt vec (const std::initializer_list >& init_l ist);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 106--106 [] @texttt vec& operator= (const std::initializer_list >& init_list);[] ) (../../util/lib/rheostream.2texi [115] [116] Overfull \hbox (101.17207pt too wide) in paragraph at lines 144--144 []@texttt class irheostream : public boost::iostreams::filtering_stream {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 146--146 [] @texttt irheostream() : boost::iostreams::filtering_stream() {}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 147--147 [] @texttt irheostream(const std::string& name, const std::string& suffix = std::string());[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 149--149 [] @texttt void open (const std::string& name, const std::string& suffix = std::string());[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 155--155 []@texttt class orheostream : public boost::iostreams::filtering_stream {[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 157--157 [] @texttt orheostream() : boost::iostreams::filtering_stream() {}[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 158--158 [] @texttt orheostream(const std::string& name, const std::string& suffix = std::string(),[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 161--161 [] @texttt void open (const std::string& name, const std::string& suffix = std::string(),[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 177--177 []@texttt bool scatch (std::istream& in, const std::string& ch, bool full_matc h = true);[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 183--183 []@texttt std::string delete_suffix (const std::string& name, const std::strin g& suffix);[] [117] Overfull \hbox (158.65895pt too wide) in paragraph at lines 192--192 []@texttt std::string get_full_name_from_rheo_path (const std::string& rootnam e, const std::string& suffix);[] ) Chapter 6 [118] (../../nfem/plib/adapt.4texi [119] Overfull \hbox (124.16682pt too wide) in paragraph at lines 115--115 [] @texttt Float anglecorner; // angle below which bamg considers 2 consec utive edge to be part of[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 119--119 [] @texttt isotropic(true), err(1e-2), errg(1e-1), hcoef(1), hmin(0.000 1), hmax(0.3), ratio(0), cutoff(1e-7),[] [120] Overfull \hbox (89.6747pt too wide) in paragraph at lines 122--122 [] @texttt anisomax(1e6), clean(false), additional("-RelError"), double _precision(false),[] ) (../../nfem/plib/compose.4texi) (../../nfem/plib/damped_newton.4texi [121] Overfull \hbox (118.41814pt too wide) in paragraph at lines 34--34 []@texttt int damped_newton (Problem P, Field& u, Real& tol, Size& max_iter, o diststream* p_derr=0) {[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 35--35 [] @texttt return damped_newton(P, newton_identity_preconditioner(), u, tol, max_iter, p_derr);[] ) (../../nfem/plib/integrate.4texi [122] Overfull \hbox (7.51953pt too wide) in paragraph at lines 48--54 []@textrm The last ar-gu-ment spec-i-fies the quadra-ture for-mu-lae (see Sec-t ion 5.13 [quadra-ture[]option[]type ) (../../nfem/plib/interpolate.4texi [123]) (../../nfem/plib/level_set.4texi [124]) (../../nfem/plib/limiter.4texi) (../../nfem/plib/newton.4texi [125] Overfull \hbox (112.66945pt too wide) in paragraph at lines 43--43 []@texttt int newton (Problem P, Field& uh, Float& tol, size_t& max_iter, odis tstream *p_derr = 0) {[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 44--44 [] @texttt if (p_derr) *p_derr << "# Newton:" << std::endl << "# n r" << st d::endl << std::flush;[] ) (../../nfem/plib/riesz.4texi [126] [127] [128]) (../../skit/plib2/diag.4texi) (../../skit/plib2/dis_time.4texi [129]) (../../skit/plib2/mixed_solver.4texi Overfull \hbox (175.90501pt too wide) in paragraph at lines 20--20 [] @texttt template [] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21--21 [] @texttt int pcg_abtb (const Matrix& A, const Matrix& B, Vector& u, Vecto r& p,[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 26--26 [] @texttt template [] Overfull \hbox (118.41814pt too wide) in paragraph at lines 27--27 [] @texttt int pcg_abtbc (const Matrix& A, const Matrix& B, const Matrix& C , Vector& u, Vector& p,[] [130]) (../../skit/plib2/pcg.4texi Overfull \hbox (26.43913pt too wide) in paragraph at lines 12--12 [] @texttt template [] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14--14 [] @texttt const Preconditioner &M, int &max_iter, Real &tol, odiststream *p_derr=0);[] [131] Overfull \hbox (11.95166pt too wide) in paragraph at lines 57--63 @textrm Pozo, C. Romine, H. Van der Vorst, SIAM, 1994, @texttt ftp.netlib.org/t emplates/templates.ps[]@textrm . Overfull \hbox (98.24414pt too wide) in paragraph at lines 64--68 @textrm The present im-ple-men-ta-tion is in-spired from @texttt IML++ 1.2[] @t extrm it-er-a-tive method li-brary, @texttt http://math.nist.gov/iml++[]@textrm . Overfull \hbox (158.65895pt too wide) in paragraph at lines 73--73 []@texttt template [] Overfull \hbox (49.43388pt too wide) in paragraph at lines 74--74 []@texttt int pcg(const Matrix &A, Vector &x, const Vector2 &Mb, const Precond itioner &M,[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 75--75 [] @texttt Size &max_iter, Real &tol, odiststream *p_derr = 0, std::str ing label = "cg")[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 82--82 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 88--88 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << n << " " << sqrt(norm2_r/norm2_b) << std::endl;[] [132]) (../../skit/plib2/pgmres.4texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 13--13 [] @texttt int pgmres (const Matrix &A, Vector &x, const Vector &b, const Pr econditioner &M,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 27--27 [] @texttt int status = pgmres (a, x, b, ic0(a), H, dummy, m, max_iter, tol);[] [133] Overfull \hbox (98.24414pt too wide) in paragraph at lines 90--93 @textrm The present im-ple-men-ta-tion is in-spired from @texttt IML++ 1.2[] @t extrm it-er-a-tive method li-brary, @texttt http://math.nist.gov/iml++[]@textrm . Overfull \hbox (14.94176pt too wide) in paragraph at lines 102--102 []@texttt template [] [134] Overfull \hbox (37.93651pt too wide) in paragraph at lines 143--143 []@texttt pgmres (const Matrix &A, Vector &x, const Vector &b, const Precondit ioner &M,[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 144--144 [] @texttt SmallMatrix &H, const SmallVector&, const Size &m, Size &max_i ter, Real &tol,[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 156--156 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] # norm_b=" << norm_b < < std::endl;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 157--157 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] [135] Overfull \hbox (141.41289pt too wide) in paragraph at lines 187--187 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << j << " " << r esidue/norm_b << std::endl;[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 200--200 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << j << " " << res idue/norm_b << std::endl;[] ) (../../skit/plib2/pminres.4texi Overfull \hbox (26.43913pt too wide) in paragraph at lines 12--12 [] @texttt template [] Overfull \hbox (89.6747pt too wide) in paragraph at lines 13--13 [] @texttt int pminres (const Matrix &A, Vector &x, const Vector &b, const Preconditioner &M,[] [136] Overfull \hbox (72.42863pt too wide) in paragraph at lines 62--62 []@texttt template [] Overfull \hbox (66.67995pt too wide) in paragraph at lines 63--63 []@texttt int pminres(const Matrix &A, Vector &x, const Vector &Mb, const Prec onditioner &M,[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 64--64 [] @texttt Size &max_iter, Real &tol, odiststream *p_derr = 0, std::string la bel = "minres")[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 74--74 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] # norm_b=" <[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13--13 [] @texttt int puzawa (const Matrix &A, Vector &x, const Vector &b, const P reconditioner &M,[] [139] Overfull \hbox (78.17732pt too wide) in paragraph at lines 58--58 []@texttt template < class Matrix, class Vector, class Preconditioner, class R eal, class Size>[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 59--59 []@texttt int puzawa(const Matrix &A, Vector &x, const Vector &Mb, const Preco nditioner &M,[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 67--67 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 72--72 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << n << " " << sqrt(norm2_r/norm2_b) << std::endl;[] ) (../../util/lib/catchmark.4texi [140] Overfull \hbox (55.18257pt too wide) in paragraph at lines 27--27 [] @texttt friend std::istream& operator >> (std::istream& is, const ca tchmark& m);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 28--28 [] @texttt friend std::ostream& operator << (std::ostream& os, const ca tchmark& m);[] ) Chapter 7 [141] [142] (../../nfem/plib/basis.7texi [143]) (../../nfem/plib/domain_indirect.7texi Overfull \hbox (158.65895pt too wide) in paragraph at lines 34--34 []@texttt class domain_indirect_basic : public smart_pointer > {[] [144] Overfull \hbox (181.6537pt too wide) in paragraph at lines 59--59 [] @texttt disarray >,sequen tial, heap_allocator >&[] [145] Overfull \hbox (204.64845pt too wide) in paragraph at lines 88--88 [] @texttt idiststream& get (idiststream& ips, const geo_rep& omega, std::vector *ball);[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 94--94 []@texttt class domain_indirect_basic : public smart_pointer > {[] [146] Overfull \hbox (37.93651pt too wide) in paragraph at lines 143--143 [] @texttt idiststream& get (idiststream& ips, const geo_rep & omega);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 145--145 [] @texttt odiststream& put (odiststream& ops, const geo_rep & omega) const;[] ) (../../nfem/plib/geo_domain.7texi) (../../nfem/plib/geo_domain_indirect.7texi [147]) (../../nfem/plib/numbering.7texi Overfull \hbox (43.6852pt too wide) in paragraph at lines 48--48 [] @texttt const basis_basic& get_basis() const { return base::data().get_ basis(); }[] [148] Overfull \hbox (204.64845pt too wide) in paragraph at lines 52--52 [] @texttt void dis_idof (const geo_size& gs, const geo_element& K, st d::vector& dis_idof) const;[] ) (../../nfem/geo_element/edge.7texi) (../../nfem/geo_element/geo_element.7texi [149]) (../../nfem/geo_element/hack_array.7texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 19--19 [] @texttt std::pair param (reference_element::t, 3); // tri angle, order=3[] [150] Overfull \hbox (72.42863pt too wide) in paragraph at lines 52--52 []@texttt class hack_array : public smart_pointer > {[] [151] Overfull \hbox (152.91026pt too wide) in paragraph at lines 73--73 [] @texttt hack_array (size_type loc_size, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 74--74 [] @texttt void resize (const distributor& ownership, const parameter_typ e& param);[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 75--75 [] @texttt hack_array (const distributor& ownership, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [] @texttt void resize (size_type loc_size, const parameter_typ e& param);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 80--80 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 82--82 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 83--83 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 86--86 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 87--87 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 89--89 [] @texttt const_reference dis_at (size_type dis_i) const { return base::da ta().operator[] (dis_i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 98--98 [] @texttt template void append_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 103--103 [] @texttt dis_reference dis_entry (size_type dis_i) { return operator[] (d is_i); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 116--116 [] @texttt void repartition ( // old_numberin g for *this[] [152] Overfull \hbox (49.43388pt too wide) in paragraph at lines 118--118 [] @texttt hack_array& new_array, // new_ownershi p (created)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 121--121 [] @texttt { return base::data().repartition (partition, new_array, old _numbering, new_numbering); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 124--124 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 126--126 [] @texttt hack_array& new_array) const // new_owner ship (already allocated)[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 127--127 [] @texttt { return base::data().permutation_apply (new_numbering, new_ array); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 132--132 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 133--133 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 135--135 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 137--137 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 139--139 [] @texttt void dump (std::string name) const { return base::data().dump(na me); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 146--146 []@texttt class hack_array : public smart_pointer > {[] [153] Overfull \hbox (152.91026pt too wide) in paragraph at lines 168--168 [] @texttt hack_array (const distributor& ownership, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 169--169 [] @texttt void resize (const distributor& ownership, const parameter_typ e& param);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 173--173 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 175--175 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 176--176 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 179--179 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 180--180 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (377.10909pt too wide) in paragraph at lines 190--190 [] @texttt void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().append_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (359.86302pt too wide) in paragraph at lines 193--193 [] @texttt void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().get_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 196--196 [] @texttt void append_dis_indexes (const Set& ext_idx_set) const { base::d ata().append_dis_indexes (ext_idx_set); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 199--199 [] @texttt void set_dis_indexes (const Set& ext_idx_set) { base::data() .set_dis_indexes (ext_idx_set); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 201--201 [] @texttt const_reference dis_at (size_type dis_i) const { return base::da ta().dis_at (dis_i); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 204--204 [] @texttt const scatter_map_type& get_dis_map_entries() const { return bas e::data().get_dis_map_entries(); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 206--206 [] @texttt void update_dis_entries() const { base::data().update_dis_entrie s(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 210--210 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::d ata().dis_entry(dis_i); }[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 212--212 [] @texttt void dis_entry_assembly() { return base::d ata().dis_entry_assembly(); }[] [154] Overfull \hbox (244.88927pt too wide) in paragraph at lines 215--215 [] @texttt void dis_entry_assembly (SetOp my_set_op) { return base::d ata().dis_entry_assembly (my_set_op); }[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 217--217 [] @texttt void dis_entry_assembly_begin (SetOp my_set_op) { return base::d ata().dis_entry_assembly_begin (my_set_op); }[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 219--219 [] @texttt void dis_entry_assembly_end (SetOp my_set_op) { return base::d ata().dis_entry_assembly_end (my_set_op); }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 224--224 [] @texttt void repartition ( // old_numbering for *this[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 226--226 [] @texttt hack_array& new_array, // new_owne rship (created)[] Overfull \hbox (313.87352pt too wide) in paragraph at lines 229--229 [] @texttt { return base::data().repartition (partition.data(), new_arr ay.data(), old_numbering.data(), new_numbering.data()); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 233--233 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 235--235 [] @texttt hack_array& new_array) const // new_owner ship (already allocated)[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 236--236 [] @texttt { base::data().permutation_apply (new_numbering.data(), new_ array.data()); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 238--238 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 239--239 [] @texttt hack_array& inew2dis_iold) const // new_ownership[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 245--245 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 246--246 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 248--248 [] @texttt void dump (std::string name) const { return base::data().du mp(name); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 255--255 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 263--263 [] @texttt { return base::data().permuted_put_values (ops, perm.da ta(), put_element); }[] [155]) (../../nfem/geo_element/hexahedron.7texi [156]) (../../nfem/geo_element/point.7texi [157]) (../../nfem/geo_element/prism.7texi [158]) (../../nfem/geo_element/quadrangle.7texi [159]) (../../nfem/geo_element/quadrature.7texi [160] Overfull \hbox (20.69044pt too wide) in paragraph at lines 65--65 [] @texttt family_type get_family() const { return base::data().get_fami ly();}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 66--66 [] @texttt std::string get_family_name() const { return base::data().get _family_name();}[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 67--67 [] @texttt const quadrature_option_type& get_options() const { return base: :data().get_options(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 68--68 [] @texttt size_type size (reference_element hat_K) const { return ba se::data().size(hat_K); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 69--69 [] @texttt const_iterator begin (reference_element hat_K) const { return ba se::data().begin(hat_K); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 70--70 [] @texttt const_iterator end (reference_element hat_K) const { return ba se::data().end(hat_K); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 71--71 [] @texttt const weighted_point& operator() (reference_element hat_K, si ze_type q) const[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 72--72 [] @texttt { return ba se::data().operator() (hat_K,q); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 74--74 [] @texttt friend std::ostream& operator<< (std::ostream& os, const quadrat ure& q) {[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [] @texttt base::data().side_initialize (tilde_K, loc_isid, hat_S, shift, orient);[] [161]) (../../nfem/geo_element/reference_element.7texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 58--58 [] @texttt : _x(x) { assert_macro (x >= 0 && x <= max_variant, "invalid t ype " << x); }[] [162] Overfull \hbox (112.66945pt too wide) in paragraph at lines 63--63 [] @texttt void set_variant (size_type n_vertex, size_type dim) { _x = vari ant (n_vertex, dim); }[] Overfull \hbox (141.41289pt too wide) in paragraph at lines 72--72 [] @texttt size_type n_subgeo(size_type subgeo_dim) const { return n_subgeo (variant(), subgeo_dim); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 75--75 [] @texttt size_type subgeo_size (size_type subgeo_dim, size_type loc_isid) const {[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 77--77 [] @texttt size_type subgeo_local_vertex(size_type subgeo_dim, size_type lo c_isid, size_type loc_jsidvert) const {[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 78--78 [] @texttt return subgeo_local_node (_x, 1, subgeo_dim, loc_isid, loc_j sidvert); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 84--84 [] @texttt void side_normal (size_type loc_isid, point_basic& hat_n) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 90--90 [] @texttt static char name (variant_type variant) { return _na me [variant]; }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 91--91 [] @texttt static size_type dimension (variant_type variant) { return _di mension[variant]; }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 92--92 [] @texttt static size_type n_vertex (variant_type variant) { return _n_ vertex [variant]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 93--93 [] @texttt static size_type n_node (variant_type variant, size_type or der);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 97--97 [] @texttt static size_type n_subgeo (variant_type variant, size_type subgeo_dim);[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 98--98 [] @texttt static size_type subgeo_n_node (variant_type variant, size_type order, size_type subgeo_dim, size_type loc_isid);[] Overfull \hbox (423.09859pt too wide) in paragraph at lines 99--99 [] @texttt static size_type subgeo_local_node (variant_type variant, size_t ype order, size_type subgeo_dim, size_type loc_isid, size_type loc_jsidnod);[] Overfull \hbox (239.14058pt too wide) in paragraph at lines 106--106 [] @texttt static size_type first_inod_by_variant (variant_type variant, si ze_type order, variant_type subgeo_variant);[] [163] Overfull \hbox (233.39189pt too wide) in paragraph at lines 107--107 [] @texttt static size_type last_inod_by_variant (variant_type variant, si ze_type order, variant_type subgeo_variant)[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 108--108 [] @texttt { return first_inod_by_variant (variant, order, subgeo_varian t+1); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 109--109 [] @texttt static size_type first_inod (variant_type variant, size_type ord er, size_type subgeo_dim)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 110--110 [] @texttt { return first_inod_by_variant (variant, order, first_variant _by_dimension(subgeo_dim)); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 111--111 [] @texttt static size_type last_inod (variant_type variant, size_type ord er, size_type subgeo_dim)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 112--112 [] @texttt { return first_inod_by_variant (variant, order, last_variant _by_dimension(subgeo_dim)); }[] Overfull \hbox (382.85777pt too wide) in paragraph at lines 113--113 [] @texttt static void init_local_nnode_by_variant (size_type order, std::a rray& loc_nnod_by_variant);[] ) (../../nfem/geo_element/tetrahedron.7texi [164] [165]) (../../nfem/geo_element/triangle.7texi [166]) (../../skit/plib2/index_set.7texi [167] Overfull \hbox (89.6747pt too wide) in paragraph at lines 41--41 [] @texttt friend void set_union (const index_set& a, const index_set& b, index_set& c);[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 42--42 [] @texttt friend void set_intersection (const index_set& a, const index_set& b, index_set& c);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 47--47 [] @texttt friend std::ostream& operator<< (std::ostream& os, const index_set & x);[] ) (../../skit/plib2/pair_set.7texi Overfull \hbox (32.18782pt too wide) in paragraph at lines 16--16 []@texttt class pair_set: public std::map, A> {[] [168] Overfull \hbox (14.94176pt too wide) in paragraph at lines 40--40 [] @texttt pair_set& operator+= (const pair_type& x); // c := a unio n {x}[] ) (../../util/lib/Vector.7texi [169] [170] Overfull \hbox (49.43388pt too wide) in paragraph at lines 101--101 [] @texttt void insert (iterator position, const_iterator first, const_iter ator last);[] ) (../../util/lib/heap_allocator.7texi Overfull \hbox (147.16158pt too wide) in paragraph at lines 20--20 [] @texttt typedef map , heap_allocator > > map_type;[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 24--24 [] @texttt for (map_type::iterator iter = a.begin(), last = a.end(); iter ! = last; iter++) {[] [171] Overfull \hbox (14.94176pt too wide) in paragraph at lines 60--60 [] @texttt : handler ((typename heap_allocator::handler_type*)(ha.hand ler))[] [172] Overfull \hbox (129.91551pt too wide) in paragraph at lines 88--88 [] @texttt size_type max_size() const { return std::numeric_limits::max() / sizeof(T); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 97--97 [] @texttt // C++ 2011: default construct a value of type T at the location referenced by p[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 98--98 [] @texttt void construct (pointer p) { new ( reinterpret_cast(p) ) T(); }[] ) (../../util/lib/smart_pointer.7texi [173] Overfull \hbox (60.93126pt too wide) in paragraph at lines 81--81 [] @texttt Pour mieux developper avec C++ : design pattern, STL, RTTI et sm art pointers,[] [174] Overfull \hbox (14.94176pt too wide) in paragraph at lines 83--83 [] @texttt [2] STLplus, http://stlplus.sourceforge.net/stlplus3/docs/smart_ptr .html[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 126--126 [] @texttt int reference_counter() const { return _count != 0 ? _count->_n : -1; }[] ) (../../util/lib/stack_allocator.7texi [175] Overfull \hbox (35.10944pt too wide) in paragraph at lines 16--19 @textrm ex-cep-tion is em-mited. For a non-limited mem-ory han-dler in the same spirit, see @texttt "@textrm heap[]allocator@texttt "@textrm (9). Overfull \hbox (72.42863pt too wide) in paragraph at lines 24--24 [] @texttt stack_allocator stack_alloc (stack.begin().operator->(), stack.size());[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 25--25 [] @texttt typedef map , stack_allocator > > map_type;[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 29--29 [] @texttt for (map_type::iterator iter = a.begin(), last = a.end(); iter ! = last; iter++) {[] [176] Overfull \hbox (20.69044pt too wide) in paragraph at lines 70--70 [] @texttt : handler ((typename stack_allocator::handler_type*)(sa.han dler))[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 99--99 [] @texttt size_type max_size() const { return std::numeric_limits::max() / sizeof(T); }[] [177] Overfull \hbox (78.17732pt too wide) in paragraph at lines 108--108 [] @texttt // C++ 2011: default construct a value of type T at the location referenced by p[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 109--109 [] @texttt void construct (pointer p) { new ( reinterpret_cast(p) ) T(); }[] [178] Overfull \hbox (32.18782pt too wide) in paragraph at lines 164--164 [] @texttt trace_macro ("stack_allocator::mem_info cstori: size="<>/doc/refman/FAQ.texi Chapter 10 [194] Overfull \hbox (10.36597pt too wide) in paragraph at lines 77--82 []@textrm the au-to-mat-i-cally gen-er-ated script, scan the ma-chine and tran s-late `@texttt config.h.in[]@textrm '[], [195] [196]) (/<>/doc/refman/gpl.texi Appendix @char @appendixno [197] [198] Underfull \hbox (badness 2368) in paragraph at lines 63--63 []@secrm TERMS AND CON-DI-TIONS FOR COPY-ING, [199] [200] [201] [202] [203] [204]) (Concept Index) [205] [206] (/<>/doc/refman/rheolef-refman.cps [207]) (Program Index) [208] (/<>/doc/refman/rheolef-refman.pgs) (Class Index) [209] [210] (/<>/doc/refman/rheolef-refman.cls) (Approximation Index) [211] [212] (/<>/doc/refman/rheolef-refman.aps) (Function Index) [213] [214] (/<>/doc/refman/rheolef-refman.fns) (File Format Index) [215] [216] (/<>/doc/refman/rheolef-refman.fis) (Related Tool Index) [217] [218] (/<>/doc/refman/rheolef-refman.tos [219]) [220] (/<>/doc/refman/rheolef-refman.toc) [-1] [-2] (/<>/doc/refman/rheolef-refman.toc [-3] [-4] [-5]) [-6] ) (see the transcript file for additional information) Output written on rheolef-refman.dvi (228 pages, 565956 bytes). Transcript written on rheolef-refman.log. TEXINPUTS=./:./:../../demo/:../../config/: MAKEINFO='makeinfo --force -I . -I .' texi2pdf ./ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (././rheolef-refman.texi (/<>/doc/refman/texinfo.tex Loading texinfo [version 1999-03-26.17]: Basics, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, localization, and turning on texinfo input format.) (/<>/doc/refman/rheolef-refman.aux) (/<>/doc/refman/myversion.texi) [1{/var/lib/texmf /fonts/map/pdftex/updmap/pdftex.map}] [2] Chapter 1 (/<>/doc/refman/introduction.texi) (/<>/doc/refman/INSTALL.texi Chapter 2 [1] [2] Overfull \hbox (55.18257pt too wide) in paragraph at lines 54--54 [] @texttt firefox http://ljk.imag.fr/membres/Pierre.Saramito/rheolef/rheolef -refman.html[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 70--70 [] @texttt firefox http://ljk.imag.fr/membres/Pierre.Saramito/rheolef/source_ html/[] [3] [4] [5] Overfull \hbox (55.18257pt too wide) in paragraph at lines 311--311 [] @texttt CXX=icpc CXXFLAGS=-I/usr/local/include LIBS="-L/usr/local/lib -lz" ./configure[] Overfull \hbox (1.0965pt too wide) in paragraph at lines 362--364 []@textrm Set the home di-rec-tory for the @texttt cln[] @textrm li-brary. De- fault @textsl dir[]cln @textrm is `@texttt /usr/local/math[]@textrm '[]. [6] Overfull \hbox (31.82034pt too wide) in paragraph at lines 420--426 @textsl dir[]parmetis @textrm for @texttt libparmetis.so[]@textrm , @texttt li bparmetis.a[] @textrm and also @texttt libmetis.a[] libmetis.so[]@textrm . Overfull \hbox (44.75717pt too wide) in paragraph at lines 438--444 []@textrm Turns on/off the @texttt scalapack[] @textrm li-braries. Check in @t extsl rheo[]libs[]scalapack @textrm for @texttt libscalapack.so[]@textrm , Overfull \hbox (16.5128pt too wide) in paragraph at lines 448--453 []@textrm Turns on/off the @texttt mumps[] @textrm dis-tributed solver. Check in @textsl lib-dir[]mumps @textrm for @texttt libmumps.so[]@textrm , Overfull \hbox (22.83936pt too wide) in paragraph at lines 464--468 []@textrm Turns on/off the @texttt pastix[] @textrm dis-tributed solver. Check in @textsl lib-dir[]pastix @textrm for @texttt libpastix.so[]@textrm , [7] Overfull \hbox (10.56544pt too wide) in paragraph at lines 475--480 @textrm and for header @textsl in-cdir[]cholmod@textrm /cholmod.h or @textsl i n-cdir[]cholmod@textrm /cholmod/cholmod.h. Overfull \hbox (83.97032pt too wide) in paragraph at lines 487--492 @texttt libumfpack.a[] @textrm and for header @textsl in-cdir[]umfpack@textrm /umfpack.h or @textsl in-cdir[]umfpack@textrm /umfpack/umfpack.h. [8]) Chapter 3 [9] [10] (/<>/doc/refman/includes.texi Chapter 4 [11] [12] (../../nfem/pbin/branch.1texi [13] [14]) (../../nfem/pbin/field.1texi [15] [16] [17] [18] Overfull \hbox (66.67995pt too wide) in paragraph at lines 288--288 [] @texttt field cube.field -cut -normal 0 1 0 -origin 0.5 0.5 0.5 -text > cube-cut.field[] [19]) (../../nfem/pbin/geo.1texi [20] [21] [22]) (../../nfem/pbin/msh2geo.1texi [23] Overfull \hbox (26.43913pt too wide) in paragraph at lines 57--57 [] @texttt i.e., the numbering follows that of the nodes of an embedded face/ volume.[] [24]) (../../nfem/sbin/bamg2geo.1texi [25]) (../../nfem/sbin/mkgeo_ball.1texi [26] Overfull \hbox (16.24315pt too wide) in paragraph at lines 63--67 @textrm The ge-om-e-try can be el-lipse/ellipsoid in-scribted in the [a,b]x[c,d ] rect-an-gle or the [a,b]x[c,d]x[f,g] [27]) (../../nfem/sbin/mkgeo_grid.1texi [28] Overfull \hbox (1.14882pt too wide) in paragraph at lines 79--82 @texttt -nosides[]@textrm The bound-ary sides are rep-resentd by do-mains: @te xttt left[]@textrm , @texttt right[]@textrm , @texttt top[]@textrm , @texttt bo ttom[]@textrm ,@texttt front[] [29]) (../../nfem/sbin/mkgeo_ugrid.1texi [30] Overfull \hbox (1.14882pt too wide) in paragraph at lines 98--101 @texttt -nosides[]@textrm The bound-ary sides are rep-resentd by do-mains: @te xttt left[]@textrm , @texttt right[]@textrm , @texttt top[]@textrm , @texttt bo ttom[]@textrm ,@texttt front[] [31]) (../../util/bamg/bamg.1texi [32] [33] [34] Overfull \hbox (32.18782pt too wide) in paragraph at lines 149--149 [] @texttt bamg -b toto_old.bamg -rbb toto_old.bb -r toto_new.bamg -obb tot o_new.bb[] [35] [36] [37] [38] [39] Overfull \hbox (68.45793pt too wide) in paragraph at lines 429--431 []@textrm Frederic Hecht @texttt <@textrm Fred-eric.Hecht@texttt @@textrm inria .fr@texttt > @textrm is the au-thor of bamg. Pierre Saramito @texttt <@textrm P ierre.Saramito@texttt @@textrm imag.fr@texttt > [40]) (../../config/rheolef-config.1texi Overfull \hbox (19.55571pt too wide) in paragraph at lines 433--2 []@textrm The orig-i-nal site of the bamg mesh gen-er-a-tor is @texttt http://w ww.ann.jussieu.fr/hecht/ftp/bamg[]@textrm . [41]) Chapter 5 [42] (../../nfem/plib/band.2texi Overfull \hbox (89.6747pt too wide) in paragraph at lines 57--57 [] @texttt size_type sid_ie2bnd_ie (size_type sid_ie) const { return _sid_ie2 bnd_ie [sid_ie]; }[] [43]) (../../nfem/plib/branch.2texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 37--37 []@texttt class branch_basic : public std::vector > > {[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt typedef std::vector > > base;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 42--42 [] @texttt typedef typename base::size_type size_type;[] [44] Overfull \hbox (20.69044pt too wide) in paragraph at lines 53--53 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 54--54 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 55--55 [] @texttt const std::string & u1);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 56--56 [] @texttt branch_basic (const std::string& parameter_name, const std::string & u0,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 57--57 [] @texttt const std::string & u1,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 58--58 [] @texttt const std::string & u2);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 79--79 [] @texttt __obranch operator() (const T& t, const field_basic& u 0, Args... uk);[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 81--81 [] @texttt __iobranch operator() (T& t, field_basic& u 0, Args&... uk);[] [45]) (../../nfem/plib/characteristic.2texi [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 61--61 []@texttt class characteristic_basic : public smart_pointer > {[] ) (../../nfem/plib/field.2texi [47] [48] Overfull \hbox (67.46213pt too wide) in paragraph at lines 108--111 []@textrm The space as-so-ci-ated to the trace writes @texttt wh.get_space()[] @textrm and is equiv-a-lent to @texttt space(omega["boundary"], [49] Overfull \hbox (59.90681pt too wide) in paragraph at lines 154--161 @texttt d=omega.dimension()[]@textrm . A tensor-valued field has @texttt d*(d+1 )/2[] @textrm com-po-nents, where @texttt d=omega.dimension()[]@textrm . Overfull \hbox (147.16158pt too wide) in paragraph at lines 201--201 []@texttt class field_basic : public std::unary_function::type>,T> {[] [50] Overfull \hbox (43.6852pt too wide) in paragraph at lines 247--247 [] @texttt details::is_field_expr_v2_linear_arg::value[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 254--254 [] @texttt details::is_field_expr_v2_linear_arg::value[] [51] Overfull \hbox (72.42863pt too wide) in paragraph at lines 262--262 [] @texttt field_basic (const std::initializer_list >& init_list);[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 263--263 [] @texttt field_basic& operator= (const std::initializer_list >& init_list);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 279--279 [] @texttt vec& set_u() { dis_dof_indexes_requires_update( ); return _u; }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 280--280 [] @texttt vec& set_b() { dis_dof_indexes_requires_update( ); return _b; }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 292--292 [] @texttt field_indirect_const operator[] (const geo_basic& dom ) const;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 301--301 [] @texttt field_component operator() (size_type i_comp, size_ty pe j_comp);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 302--302 [] @texttt field_component_const operator() (size_type i_comp, size_ty pe j_comp) const;[] [52] Overfull \hbox (32.18782pt too wide) in paragraph at lines 306--306 [] @texttt const distributor& ownership() const { return get_space().owners hip(); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 329--329 [] @texttt T dis_evaluate (const point_basic& x, size_type i_comp = 0) c onst;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 330--330 [] @texttt T operator() (const point_basic& x) const { return dis_eval uate (x,0); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 338--338 [] @texttt T evaluate (const geo_element& K, const point_basic& hat_xq, size_type i_comp = 0) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 340--340 [] @texttt // propagate changed values shared at partition boundaries to ot hers procs[] [53]) (../../nfem/plib/field_functor.2texi [54] Overfull \hbox (55.18257pt too wide) in paragraph at lines 52--52 [] @texttt const Function& get_ref() const { return static_cast(*this); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 54--54 [] @texttt Result operator() (const point& x) const { return get_ref().operato r()(x); }[] ) (../../nfem/plib/form.2texi [55] [56] Overfull \hbox (60.93126pt too wide) in paragraph at lines 100--100 [] @texttt form_basic (const std::initializer_list > & init_list);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 101--101 [] @texttt form_basic (const std::initializer_list > & init_list);[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 120--120 [] @texttt float_type operator () (const field_basic& uh, const field_ basic& vh) const;[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 124--124 [] @texttt odiststream& put (odiststream& ops, bool show_partition = true) const;[] [57] [58] Overfull \hbox (152.91026pt too wide) in paragraph at lines 218--218 [] @texttt const geo_basic& w_omega, // the domain wh ere the fct weight is defined[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 221--221 []@texttt template form_basic trans (const form_basic& a);[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 222--222 []@texttt template field_basic diag (const form_basic& a);[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 223--223 []@texttt template form_basic diag (const field_basic< T,M>& dh);[] ) (../../nfem/plib/form_option_type.2texi [59]) (../../nfem/plib/functor.2texi [60]) (../../nfem/plib/geo.2texi [61] Overfull \hbox (129.91551pt too wide) in paragraph at lines 10--10 []@texttt class geo_basic : public smart_pointer_clone > {[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 27--27 [] @texttt typedef typename rep::const_iterator_by_variant const_iterator_b y_variant;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 33--33 [] @texttt geo_basic (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 34--34 [] @texttt void load (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 35--35 [] @texttt geo_basic (const domain_indirect_basic& dom, const g eo_basic& omega);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 41--41 [] @texttt const std::array >,sequential>,[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 47--47 [] @texttt std::string name() const { return base::data( ).name(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 48--48 [] @texttt std::string familyname() const { return base::data( ).familyname(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 49--49 [] @texttt size_type dimension() const { return base::data( ).dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 50--50 [] @texttt size_type map_dimension() const { return base::data( ).map_dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 51--51 [] @texttt size_type serial_number() const { return base::data( ).serial_number(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 52--52 [] @texttt size_type variant() const { return base::data( ).variant(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 53--53 [] @texttt coordinate_type coordinate_system() const { return base::data( ).coordinate_system(); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 54--54 [] @texttt std::string coordinate_system_name() const { return space_const ant::coordinate_system_name(coordinate_system()); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 55--55 [] @texttt const basis_basic& get_piola_basis() const { return base::dat a().get_piola_basis(); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 56--56 [] @texttt size_type order() const { return base::data( ).get_piola_basis().degree(); }[] [62] Overfull \hbox (49.43388pt too wide) in paragraph at lines 57--57 [] @texttt const node_type& xmin() const { return base::data( ).xmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 58--58 [] @texttt const node_type& xmax() const { return base::data( ).xmax(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 59--59 [] @texttt const T& hmin() const { return base::data( ).hmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 60--60 [] @texttt const T& hmax() const { return base::data( ).hmax(); }[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 61--61 [] @texttt const distributor& geo_element_ownership(size_type dim) const { return base::data().geo_element_ownership(dim); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 62--62 [] @texttt const geo_size& sizes() const { return base::da ta().sizes(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 63--63 [] @texttt const geo_size& ios_sizes() const { return base::da ta().ios_sizes(); }[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 64--64 [] @texttt const_reference get_geo_element (size_type dim, size_type ige) c onst { return base::data().get_geo_element (dim, ige); }[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 65--65 [] @texttt reference get_geo_element (size_type dim, size_type ige) { return base::data().get_geo_element (dim, ige); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 66--66 [] @texttt const_reference dis_get_geo_element (size_type dim, size_type di s_ige) const[] Overfull \hbox (331.11958pt too wide) in paragraph at lines 68--68 [] @texttt const geo_element& bgd2dom_geo_element (const geo_element& bgd_K ) const { return base::data().bgd2dom_geo_element (bgd_K); }[] Overfull \hbox (331.11958pt too wide) in paragraph at lines 69--69 [] @texttt const geo_element& dom2bgd_geo_element (const geo_element& dom_K ) const { return base::data().dom2bgd_geo_element (dom_K); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 71--71 [] @texttt return base::data().neighbour (ie, loc_isi d); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 74--74 [] @texttt const node_type& node(size_type inod) const { return bas e::data().node(inod); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 75--75 [] @texttt const node_type& dis_node(size_type dis_inod) const { return bas e::data().dis_node(dis_inod); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 76--76 [] @texttt void dis_inod (const geo_element& K, std::vector& dis _inod) const {[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 78--78 [] @texttt node_type piola (const geo_element& K, const node_type& hat_x) c onst { return base::data().piola (K, hat_x); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 79--79 [] @texttt const disarray& get_nodes() const { return base::data().get_nodes(); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 80--80 [] @texttt size_type dis_inod2dis_iv (size_type dis_inod) const { return ba se::data().dis_inod2dis_iv(dis_inod); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 82--82 [] @texttt size_type n_domain_indirect () const { return base::data().n_dom ain_indirect (); }[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 83--83 [] @texttt bool have_domain_indirect (const std::string& name) const { retu rn base::data().have_domain_indirect (name); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 84--84 [] @texttt const domain_indirect_basic& get_domain_indirect (si ze_type i) const {[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 86--86 [] @texttt const domain_indirect_basic& get_domain_indirect (co nst std::string& name) const {[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 88--88 [] @texttt void insert_domain_indirect (const domain_indirect_basic& dom) const {[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 91--91 [] @texttt size_type n_domain () const { return base::data().n_domain_indir ect (); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 100--100 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 104--104 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] [63] Overfull \hbox (95.42339pt too wide) in paragraph at lines 114--114 [] @texttt { return base::data().seq_tr ace_move (x,v,y); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 119--119 [] @texttt { return base::data().dis_tr ace_move (x,v,y); }[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 125--125 [] @texttt { return base::data().trace_ ray_boundary (x,v,dis_ie,y); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 131--131 [] @texttt { return base::data().trace_ move (x,v,dis_ie,y); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 135--135 [] @texttt { return base::data().seq_ne arest (x, x_nearest); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 139--139 [] @texttt { return base::data().dis_ne arest (x, x_nearest); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 142--142 [] @texttt disarray,sequential>& x_nea rest,[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 143--143 [] @texttt disarray& dis_i e) const[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 144--144 [] @texttt { base::data().nearest (x, x _nearest, dis_ie); }[] Overfull \hbox (388.60646pt too wide) in paragraph at lines 153--153 [] @texttt void set_coordinate_system (std::string sys_coord_name) { set_co ordinate_system (space_constant::coordinate_system(sys_coord_name)); }[] [64] Overfull \hbox (66.67995pt too wide) in paragraph at lines 155--155 [] @texttt void build_by_subdividing (const geo_basic& omega, size_type k);[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 157--157 [] @texttt const geo_header& hdr,[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 158--158 [] @texttt const disarray& node,[] Overfull \hbox (469.08809pt too wide) in paragraph at lines 159--159 [] @texttt std::array >,sequential, heap_allocator >, reference_element::max_vari ant>&[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 160--160 [] @tex ttt tmp_geo_element,[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 165--165 [] @texttt const communicator& comm() const { return geo_element_own ership (0).comm(); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 166--166 [] @texttt size_type size(size_type dim) const { return base::data().ge o_element_ownership(dim).size(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 167--167 [] @texttt size_type dis_size(size_type dim) const { return base::data().ge o_element_ownership(dim).dis_size(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 168--168 [] @texttt size_type size() const { return size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 169--169 [] @texttt size_type dis_size() const { return dis_size (map_d imension()); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 172--172 [] @texttt const_reference operator[] (size_type ie) const { return get_geo _element (map_dimension(), ie); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 173--173 [] @texttt reference operator[] (size_type ie) { return get_geo _element (map_dimension(), ie); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 174--174 [] @texttt const_iterator begin (size_type dim) const { return base::data() .begin(dim); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 175--175 [] @texttt const_iterator end (size_type dim) const { return base::data() .end (dim); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 176--176 [] @texttt const_iterator begin () const { return begin(map_di mension()); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 177--177 [] @texttt const_iterator end () const { return end (map_di mension()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 179--179 [] @texttt const_iterator_by_variant begin_by_variant (variant_type variant ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 181--181 [] @texttt const_iterator_by_variant end_by_variant (variant_type variant ) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 184--184 [] @texttt const geo_basic& get_background_geo() const; // co de in geo_domain.h[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 189--189 [] @texttt size_type ige2ios_dis_ige (size_type dim, size_type ige) const { return ige; }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 190--190 [] @texttt size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const { return dis_ige; }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 191--191 [] @texttt size_type ios_ige2dis_ige (size_type dim, size_type ios_ige) con st { return ios_ige; }[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 195--195 [] @texttt bool operator== (const geo_basic& omega2) const { return base::data().operator== (omega2.data()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 202--202 [] @texttt void dump (std::string name) const { base::data().dump (n ame); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 203--203 [] @texttt bool check (bool verbose = true) const { return base::data().che ck(verbose); }[] [65] Overfull \hbox (141.41289pt too wide) in paragraph at lines 209--209 []@texttt class geo_basic : public smart_pointer_clone > {[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 227--227 [] @texttt typedef typename rep::const_iterator_by_variant const_iterator_b y_variant;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 233--233 [] @texttt geo_basic (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 234--234 [] @texttt void load (std::string name, const communicator& comm = communic ator());[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 235--235 [] @texttt geo_basic (const domain_indirect_basic& dom, const geo_basic& omega);[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 240--240 [] @texttt const disarray,distributed>& node_list,[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 241--241 [] @texttt const std::array >,distributed>,[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 247--247 [] @texttt std::string name() const { return base::data( ).name(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 248--248 [] @texttt std::string familyname() const { return base::data( ).familyname(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 249--249 [] @texttt size_type dimension() const { return base::data( ).dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 250--250 [] @texttt size_type map_dimension() const { return base::data( ).map_dimension(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 251--251 [] @texttt size_type serial_number() const { return base::data( ).serial_number(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 252--252 [] @texttt size_type variant() const { return base::data( ).variant(); }[] [66] Overfull \hbox (124.16682pt too wide) in paragraph at lines 253--253 [] @texttt coordinate_type coordinate_system() const { return base::data( ).coordinate_system(); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 254--254 [] @texttt std::string coordinate_system_name() const { return space_const ant::coordinate_system_name(coordinate_system()); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 255--255 [] @texttt const basis_basic& get_piola_basis() const { return base::dat a().get_piola_basis(); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 256--256 [] @texttt size_type order() const { return base::data( ).get_piola_basis().degree(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 257--257 [] @texttt const node_type& xmin() const { return base::data( ).xmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 258--258 [] @texttt const node_type& xmax() const { return base::data( ).xmax(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 259--259 [] @texttt const T& hmin() const { return base::data( ).hmin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 260--260 [] @texttt const T& hmax() const { return base::data( ).hmax(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 262--262 [] @texttt { return base::data().geo_element_ownership (dim); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 263--263 [] @texttt const geo_size& sizes() const { return base::da ta().sizes(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 264--264 [] @texttt const geo_size& ios_sizes() const { return base::da ta().ios_sizes(); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 267--267 [] @texttt const_reference dis_get_geo_element (size_type dim, size_type di s_ige) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 268--268 [] @texttt { return base::data().dis_get_geo_element (dim, dis_ ige); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 269--269 [] @texttt const geo_element& bgd2dom_geo_element (const geo_element& bgd_K ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 271--271 [] @texttt const geo_element& dom2bgd_geo_element (const geo_element& dom_K ) const[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 274--274 [] @texttt return base::data().neighbour (ie, loc_isi d); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 280--280 [] @texttt size_type dis_ige2ios_dis_ige (size_type dim, size_type dis_ige) const {[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 285--285 [] @texttt const node_type& node(size_type inod) const { return bas e::data().node(inod); }[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 286--286 [] @texttt const node_type& dis_node(size_type dis_inod) const { return bas e::data().dis_node(dis_inod); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 287--287 [] @texttt void dis_inod (const geo_element& K, std::vector& dis _inod) const {[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 289--289 [] @texttt node_type piola (const geo_element& K, const node_type& hat_x) c onst { return base::data().piola (K, hat_x); }[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 290--290 [] @texttt const disarray& get_nodes() const { retur n base::data().get_nodes(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 292--292 [] @texttt size_type n_domain_indirect () const { return base::data().n_dom ain_indirect (); }[] Overfull \hbox (250.63795pt too wide) in paragraph at lines 293--293 [] @texttt bool have_domain_indirect (const std::string& name) const { retu rn base::data().have_domain_indirect (name); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 294--294 [] @texttt const domain_indirect_basic& get_domain_indirect (s ize_type i) const {[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 296--296 [] @texttt const domain_indirect_basic& get_domain_indirect (c onst std::string& name) const {[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 298--298 [] @texttt void insert_domain_indirect (const domain_indirect_basic& dom) const {[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 301--301 [] @texttt size_type n_domain () const { return base::data().n_domain_indir ect (); }[] [67] Overfull \hbox (83.92601pt too wide) in paragraph at lines 310--310 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 314--314 [] @texttt size_type dis_ie_guest = std::numeric_limits::max()) const[] Overfull \hbox (239.14058pt too wide) in paragraph at lines 316--316 [] @texttt void locate (const disarray, distributed>& x, dis array& dis_ie) const[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 322--322 [] @texttt { return base::data().seq_tr ace_move (x,v,y); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 327--327 [] @texttt { return base::data().dis_tr ace_move (x,v,y); }[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 333--333 [] @texttt { return base::data().trace_ ray_boundary (x,v,dis_ie,y); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 339--339 [] @texttt { return base::data().trace_ move (x,v,dis_ie,y); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 343--343 [] @texttt { return base::data().seq_ne arest (x, x_nearest); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 347--347 [] @texttt { return base::data().dis_ne arest (x, x_nearest); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 350--350 [] @texttt disarray,distributed>& x_ne arest,[] [68] Overfull \hbox (37.93651pt too wide) in paragraph at lines 351--351 [] @texttt disarray& dis_ ie) const[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 352--352 [] @texttt { base::data().nearest (x, x _nearest, dis_ie); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 357--357 [] @texttt size_type dis_inod2dis_iv (size_type dis_inod) const { return ba se::data().dis_inod2dis_iv(dis_inod); }[] Overfull \hbox (388.60646pt too wide) in paragraph at lines 359--359 [] @texttt void set_coordinate_system (std::string sys_coord_name) { set_co ordinate_system (space_constant::coordinate_system(sys_coord_name)); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 363--363 [] @texttt void build_by_subdividing (const geo_basic& omega , size_type k);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 367--367 [] @texttt size_type size(size_type dim) const { return base::data().ge o_element_ownership(dim).size(); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 368--368 [] @texttt size_type dis_size(size_type dim) const { return base::data().ge o_element_ownership(dim).dis_size(); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 369--369 [] @texttt const communicator& comm() const { return geo_element_own ership (0).comm(); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 370--370 [] @texttt size_type size() const { return size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 371--371 [] @texttt size_type dis_size() const { return dis_size (map_d imension()); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 377--377 [] @texttt const_iterator begin (size_type dim) const { return base::data() .begin(dim); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 378--378 [] @texttt const_iterator end (size_type dim) const { return base::data() .end (dim); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 379--379 [] @texttt const_iterator begin () const { return begin(map_di mension()); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 380--380 [] @texttt const_iterator end () const { return end (map_di mension()); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 382--382 [] @texttt const_iterator_by_variant begin_by_variant (variant_type variant ) const[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 384--384 [] @texttt const_iterator_by_variant end_by_variant (variant_type variant ) const[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 387--387 [] @texttt const geo_basic& get_background_geo() const; // c ode in geo_domain.h[] Overfull \hbox (273.6327pt too wide) in paragraph at lines 392--392 [] @texttt bool operator== (const geo_basic& omega2) const { return base::data().operator== (omega2.data()); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 396--396 [] @texttt odiststream& put (odiststream& ops) const { return base::data(). put (ops); }[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 399--399 [] @texttt bool check (bool verbose = true) const { return base::data().che ck(verbose); }[] [69] Overfull \hbox (66.67995pt too wide) in paragraph at lines 404--404 [] @texttt std::array& loc_nd of_by_variant,[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 405--405 [] @texttt disarray& idof2i os_dis_idof) const[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 406--406 [] @texttt { base::data().set_ios_permutation (loc_ndof_by_variant, idof2i os_dis_idof); }[] ) (../../nfem/plib/space.2texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 28--28 []@texttt class space_basic : public smart_pointer > {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 40--40 [] @texttt space_basic (const geo_basic& omega = (geo_basic()),[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt std::string approx = "", std::string valued = "sca lar");[] [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 63--63 [] @texttt space_component_const operator[] (size_type i_comp ) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 69--69 [] @texttt void dis_idof (const geo_element& K, std::vector& dis _idof) const;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 90--90 [] @texttt point_basic vector_momentum (const Function& f, size_type ido f) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [] @texttt tensor_basic tensor_momentum (const Function& f, size_type id of) const;[] [71] Overfull \hbox (55.18257pt too wide) in paragraph at lines 96--96 [] @texttt const space_basic& Wh, const std::string& dom_ name) const;[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 99--99 [] @texttt const space_basic& Wh, const geo_basic& bgd_gamma) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 101--101 [] @texttt const std::set& ext_iu_set() const { return base::dat a().ext_iu_set(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 102--102 [] @texttt const std::set& ext_ib_set() const { return base::dat a().ext_ib_set(); }[] Overfull \hbox (227.6432pt too wide) in paragraph at lines 106--106 [] @texttt bool operator== (const space_basic& V2) const { re turn base::data().operator==(V2.data()); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 107--107 [] @texttt bool operator!= (const space_basic& V2) const { re turn ! operator== (V2); }[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 108--108 [] @texttt friend bool are_compatible (const space_basic& V1, const space_basic& V2) {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 115--115 []@texttt class space_basic : public smart_pointer > {[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 127--127 [] @texttt space_basic (const geo_basic& omega = (geo_basic< T,distributed>()),[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 128--128 [] @texttt std::string approx = "", std::string valued = "sca lar");[] [72] Overfull \hbox (37.93651pt too wide) in paragraph at lines 150--150 [] @texttt space_component_const operator[] (size_type i_com p) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 156--156 [] @texttt void dis_idof (const geo_element& K, std::vector& dis _idof) const;[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 178--178 [] @texttt point_basic vector_momentum (const Function& f, size_type ido f) const;[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 181--181 [] @texttt tensor_basic tensor_momentum (const Function& f, size_type id of) const;[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 184--184 [] @texttt const space_basic& Wh, const std::string& dom _name) const;[] Overfull \hbox (141.41289pt too wide) in paragraph at lines 187--187 [] @texttt const space_basic& Wh, const geo_basic& bgd_gamma) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 189--189 [] @texttt const std::set& ext_iu_set() const { return base::dat a().ext_iu_set(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 190--190 [] @texttt const std::set& ext_ib_set() const { return base::dat a().ext_ib_set(); }[] [73] Overfull \hbox (233.39189pt too wide) in paragraph at lines 194--194 [] @texttt bool operator== (const space_basic& V2) const { r eturn base::data().operator==(V2.data()); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 195--195 [] @texttt bool operator!= (const space_basic& V2) const { r eturn ! operator== (V2); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 196--196 [] @texttt friend bool are_compatible (const space_basic& V1 , const space_basic& V2) {[] ) (../../nfem/plib/test.2texi) (../../nfem/geo_element/point.2texi [74] Overfull \hbox (32.18782pt too wide) in paragraph at lines 27--27 [] @texttt explicit point_basic () { _x[0] = T(); _x[1] = T(); _x[2] = T(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 41--41 [] @texttt { _x[0] = p._x[0]; _x[1] = p._x[1]; _x[2] = p._x[2]; return *this; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 49--49 [] @texttt T& operator[](int i_coord) { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 50--50 [] @texttt const T& operator[](int i_coord) const { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 51--51 [] @texttt T& operator()(int i_coord) { return _x[i_coord% 3]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 52--52 [] @texttt const T& operator()(int i_coord) const { return _x[i_coord% 3]; }[] [75] Overfull \hbox (26.43913pt too wide) in paragraph at lines 79--79 [] @texttt { return _x[0] == v[0] && _x[1] == v[1] && _x[2] == v[2]; }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 85--85 [] @texttt { _x[0] += v[0]; _x[1] += v[1]; _x[2] += v[2]; retur n *this; }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 88--88 [] @texttt { _x[0] -= v[0]; _x[1] -= v[1]; _x[2] -= v[2]; retur n *this; }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 97--97 [] @texttt { return point_basic (_x[0]+v[0], _x[1]+v[1], _x[ 2]+v[2]); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 103--103 [] @texttt { return point_basic (_x[0]-v[0], _x[1]-v[1], _x[ 2]-v[2]); }[] [76] Overfull \hbox (49.43388pt too wide) in paragraph at lines 116--116 [] @texttt { return point_basic (_x[0]/v[0], _x[1]/v[1], _x[ 2]/v[2]); }[] [77] Overfull \hbox (72.42863pt too wide) in paragraph at lines 191--191 []@texttt T mixt (const point_basic& u, const point_basic& v, const poin t_basic& w);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 193--193 []@texttt // robust(exact) floating point predicates: return the sign of the v alue as (0, > 0, < 0)[] [78] Overfull \hbox (14.94176pt too wide) in paragraph at lines 231--231 []@texttt lexicographically_less (const point_basic& a, const point_basic& b)[] ) (../../nfem/geo_element/quadrature_option_type.2texi [79] Overfull \hbox (14.94176pt too wide) in paragraph at lines 49--49 [] @texttt quadrature_option_type& operator= (const quadrature_option_type& q opt);[] ) (../../nfem/geo_element/tensor.2texi [80] Overfull \hbox (66.67995pt too wide) in paragraph at lines 34--34 [] @texttt tensor_basic (const std::initializer_list >& il);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [] @texttt void set_row (const point_basic& r, size_t i, size_t d = 3);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 47--47 [] @texttt void set_column (const point_basic& c, size_t j, size_t d = 3);[] [81] Overfull \hbox (83.92601pt too wide) in paragraph at lines 66--66 [] @texttt bool operator!= (const tensor_basic& b) const { return ! operator== (b); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 85--85 [] @texttt // where q=(q1,q2,q3) are eigenvectors in rows (othonormal m atrix)[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 86--86 [] @texttt // and d=(d1,d2,d3) are eigenvalues, sorted in decreasing order d1 >= d2 >= d3[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 94--94 [] @texttt // where u=(u1,u2,u3) are left pseudo-eigenvectors in rows ( othonormal matrix)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 95--95 [] @texttt // v=(v1,v2,v3) are right pseudo-eigenvectors in rows (othonormal matrix)[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 96--96 [] @texttt // and s=(s1,s2,s3) are eigenvalues, sorted in decreasing order s1 >= s2 >= s3[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 98--98 [] @texttt point_basic svd (tensor_basic& u, tensor_basic& v, size_t dim = 3) const;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 108--108 []@texttt point_basic operator* (const point_basic& yt, const tensor_ba sic& a);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 112--112 []@texttt void prod (const tensor_basic& a, const tensor_basic& b, tenso r_basic& result,[] [82] Overfull \hbox (89.6747pt too wide) in paragraph at lines 121--121 []@texttt tensor_basic otimes (const point_basic& u, const point_basic& v, size_t d=3);[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 152--152 []@texttt void cumul_otimes (tensor_basic& t, const point_basic& a, cons t point_basic& b, size_t na = 3);[] Overfull \hbox (233.39189pt too wide) in paragraph at lines 154--154 []@texttt void cumul_otimes (tensor_basic& t, const point_basic& a, cons t point_basic& b, size_t na, size_t nb);[] ) (../../nfem/geo_element/tensor3.2texi [83] Overfull \hbox (14.94176pt too wide) in paragraph at lines 39--39 [] @texttt tensor3_basic& operator/= (const T& k) { return operator*= (1./ k); }[] ) (../../nfem/geo_element/tensor4.2texi [84] Overfull \hbox (14.94176pt too wide) in paragraph at lines 30--30 [] @texttt tensor4_basic (const std::initializer_list > > >& il);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 41--41 [] @texttt T& operator()(size_type i, size_type j, size_type k, size_ty pe l);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 42--42 [] @texttt const T& operator()(size_type i, size_type j, size_type k, size_ty pe l) const;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 50--50 [] @texttt tensor4_basic& operator/= (const T& k) { return operator*= (1./ k); }[] [85]) (../../skit/plib2/asr.2texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 14--14 []@texttt template >[] [86] Overfull \hbox (37.93651pt too wide) in paragraph at lines 25--25 [] @texttt dis_reference (typename base::dis_reference row_dis_i, size_ty pe dis_j)[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 39--39 [] @texttt : base(distributor(), row_type(alloc), alloc), _col_ownership( ), _nnz(0), _dis_nnz(0) {}[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 41--41 [] @texttt asr (const distributor& row_ownership, const distributor& col_ow nership, const A& alloc = A())[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 42--42 [] @texttt : base(row_ownership, row_type(alloc), alloc), _col_ownership( col_ownership), _nnz(0), _dis_nnz(0) {}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 48--48 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 66--66 [] @texttt const distributor& row_ownership() const { return base::ownershi p(); }[] [87] Overfull \hbox (66.67995pt too wide) in paragraph at lines 75--75 [] @texttt // dis_entry_assembly_end is redefined in order to recompute _nn z and _dis_nnz[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 76--76 [] @texttt void dis_entry_assembly_begin() { base::dis_entry_assembly_begin (pair_set_add_op()); }[] Overfull \hbox (279.3814pt too wide) in paragraph at lines 77--77 [] @texttt void dis_entry_assembly_end() { base::dis_entry_assembly_end (pair_set_add_op()); _recompute_nnz(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 78--78 [] @texttt void dis_entry_assembly() { dis_entry_assembly_begin(); di s_entry_assembly_end(); }[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 86--86 [] @texttt odiststream& put_seq (odiststream& ops, size_type first_dis_i = 0) const;[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 87--87 [] @texttt odiststream& put_seq_sparse_matlab (odiststream& ops, size_type first_dis_i = 0) const;[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 88--88 [] @texttt odiststream& put_seq_matrix_market (odiststream& ops, size_type first_dis_i = 0) const;[] ) (../../skit/plib2/csr.2texi [88] Overfull \hbox (26.43913pt too wide) in paragraph at lines 46--46 [] @texttt explicit csr(const asr& a) : base(new_macro(rep( a))) {}[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 47--47 [] @texttt void resize (size_type loc_nrow1 = 0, size_type loc_ncol1 = 0, s ize_type loc_nnz1 = 0)[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 49--49 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership, size_type nnz1 = 0)[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 55--55 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 56--56 [] @texttt csr (const std::initializer_list > & init_list);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 62--62 [] @texttt const distributor& row_ownership() const { return base::data().r ow_ownership(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 63--63 [] @texttt const distributor& col_ownership() const { return base::data().c ol_ownership(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 64--64 [] @texttt size_type dis_nrow () const { return row_ownership( ).dis_size(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 65--65 [] @texttt size_type dis_ncol () const { return col_ownership( ).dis_size(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 66--66 [] @texttt size_type dis_nnz () const { return base::data().n nz(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 68--68 [] @texttt bool is_symmetric() const { return base::data().i s_symmetric(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 69--69 [] @texttt void set_symmetry (bool is_symm) const { base::data().set_symm etry(is_symm); }[] [89] Overfull \hbox (95.42339pt too wide) in paragraph at lines 70--70 [] @texttt void set_symmetry_by_check (const T& tol = std::numeric_limits::epsilon()) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 71--71 [] @texttt { base::data().set_symm etry_by_check(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 72--72 [] @texttt bool is_definite_positive() const { return base::data().i s_definite_positive(); }[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 73--73 [] @texttt void set_definite_positive (bool is_defpos) const { base::data() .set_definite_positive(is_defpos); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 74--74 [] @texttt size_type pattern_dimension() const { return base::data().p attern_dimension(); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 75--75 [] @texttt void set_pattern_dimension(size_type dim) const { base::data().s et_pattern_dimension(dim); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 76--76 [] @texttt T max_abs () const { return base::data().m ax_abs(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 79--79 [] @texttt size_type nrow () const { return base::data().n row(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 80--80 [] @texttt size_type ncol () const { return base::data().n col(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 81--81 [] @texttt size_type nnz () const { return base::data().n nz(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 84--84 [] @texttt size_type row_first_index () const { return base::data().r ow_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 85--85 [] @texttt size_type row_last_index () const { return base::data().r ow_last_index(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 86--86 [] @texttt size_type col_first_index () const { return base::data().c ol_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 87--87 [] @texttt size_type col_last_index () const { return base::data().c ol_last_index(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 89--89 [] @texttt const_iterator begin() const { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 90--90 [] @texttt const_iterator end() const { return base::data().e nd(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 91--91 [] @texttt iterator begin_nonconst() { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 92--92 [] @texttt iterator end_nonconst() { return base::data().e nd(); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 96--96 [] @texttt const_iterator ext_begin() const { return const_iterator (); }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 97--97 [] @texttt const_iterator ext_end() const { return const_iterator (); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 105--105 [] @texttt void mult (const vec& x, vec& y) const {[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 108--108 [] @texttt vec operator* (const vec& x) const {[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 113--113 [] @texttt void trans_mult (const vec& x, vec& y) const {[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 116--116 [] @texttt vec trans_mult (const vec& x) const {[] [90] Overfull \hbox (20.69044pt too wide) in paragraph at lines 133--133 [] @texttt void dump (const std::string& name) const { base::data().dump(na me); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 167--167 []@texttt class csr : public smart_pointer > {[] [91] Overfull \hbox (32.18782pt too wide) in paragraph at lines 186--186 [] @texttt explicit csr(const asr& a) : base(new_macro(rep (a))) {}[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 187--187 [] @texttt void resize (const distributor& row_ownership, const distributor & col_ownership, size_type nnz1 = 0)[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 193--193 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 194--194 [] @texttt csr (const std::initializer_list >& init_list);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 200--200 [] @texttt const distributor& row_ownership() const { return base::data().r ow_ownership(); }[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 201--201 [] @texttt const distributor& col_ownership() const { return base::data().c ol_ownership(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 202--202 [] @texttt size_type dis_nrow () const { return row_ownership( ).dis_size(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 203--203 [] @texttt size_type dis_ncol () const { return col_ownership( ).dis_size(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 204--204 [] @texttt size_type dis_nnz () const { return base::data().d is_nnz(); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 205--205 [] @texttt size_type dis_ext_nnz () const { return base::data().d is_ext_nnz(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 206--206 [] @texttt bool is_symmetric() const { return base::data().i s_symmetric(); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 207--207 [] @texttt void set_symmetry (bool is_symm) const { base::data().set_symm etry(is_symm); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 208--208 [] @texttt void set_symmetry_by_check (const T& tol = std::numeric_limits::epsilon()) const[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 209--209 [] @texttt { base::data().set_symm etry_by_check(); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 210--210 [] @texttt bool is_definite_positive() const { return base::data().i s_definite_positive(); }[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 211--211 [] @texttt void set_definite_positive (bool is_defpos) const { base::data() .set_definite_positive(is_defpos); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 212--212 [] @texttt size_type pattern_dimension() const { return base::data().p attern_dimension(); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 213--213 [] @texttt void set_pattern_dimension(size_type dim) const { base::data().s et_pattern_dimension(dim); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 214--214 [] @texttt T max_abs () const { return base::data().m ax_abs(); }[] [92] Overfull \hbox (32.18782pt too wide) in paragraph at lines 217--217 [] @texttt size_type nrow () const { return base::data().n row(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 218--218 [] @texttt size_type ncol () const { return base::data().n col(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 219--219 [] @texttt size_type nnz () const { return base::data().n nz(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 222--222 [] @texttt size_type row_first_index () const { return base::data().r ow_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 223--223 [] @texttt size_type row_last_index () const { return base::data().r ow_last_index(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 224--224 [] @texttt size_type col_first_index () const { return base::data().c ol_first_index(); }[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 225--225 [] @texttt size_type col_last_index () const { return base::data().c ol_last_index(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 227--227 [] @texttt const_iterator begin() const { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 228--228 [] @texttt const_iterator end() const { return base::data().e nd(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 229--229 [] @texttt iterator begin_nonconst() { return base::data().b egin(); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 230--230 [] @texttt iterator end_nonconst() { return base::data().e nd(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 233--233 [] @texttt size_type ext_nnz() const { return base::data().e xt_nnz(); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 234--234 [] @texttt const_iterator ext_begin() const { return base::data().e xt_begin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 235--235 [] @texttt const_iterator ext_end() const { return base::data().e xt_end(); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 236--236 [] @texttt iterator ext_begin_nonconst() { return base::data().e xt_begin(); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 237--237 [] @texttt iterator ext_end_nonconst() { return base::data().e xt_end(); }[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 238--238 [] @texttt size_type jext2dis_j (size_type jext) const { return base::data( ).jext2dis_j(jext); }[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 244--244 [] @texttt void mult (const vec& x, vec& y) const {[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 247--247 [] @texttt vec operator* (const vec& x) const {[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 252--252 [] @texttt void trans_mult (const vec& x, vec& y) const {[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 255--255 [] @texttt vec trans_mult (const vec& x) const {[] [93] Overfull \hbox (20.69044pt too wide) in paragraph at lines 272--272 [] @texttt void dump (const std::string& name) const { base::data().dump(na me); }[] [94]) (../../skit/plib2/dia.2texi [95]) (../../skit/plib2/disarray.2texi [96] [97] Overfull \hbox (89.6747pt too wide) in paragraph at lines 86--86 []@texttt class disarray : public smart_pointer > {[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 107--107 [] @texttt disarray (size_type loc_size = 0, const T& init_val = T(), const A& alloc = A());[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 109--109 [] @texttt disarray (const distributor& ownership, const T& init_val = T(), const A& alloc = A());[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 114--114 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 116--116 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 117--117 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 120--120 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 121--121 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 122--122 [] @texttt reference operator() (size_type i) { return base::da ta().operator[] (i); }[] [98] Overfull \hbox (112.66945pt too wide) in paragraph at lines 123--123 [] @texttt const_reference operator() (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 124--124 [] @texttt const_reference dis_at (size_type dis_i) const { return operator [] (dis_i); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 133--133 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::data(). dis_entry(dis_i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 146--146 [] @texttt template void set_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 147--147 [] @texttt template void append_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (216.14583pt too wide) in paragraph at lines 148--148 [] @texttt template void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const {}[] Overfull \hbox (216.14583pt too wide) in paragraph at lines 149--149 [] @texttt template void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const {}[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 154--154 [] @texttt void repartition ( // old_numberin g for *this[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 156--156 [] @texttt disarray& new_disarray, // new_ownershi p (created)[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 159--159 [] @texttt { return base::data().repartition (partition, new_disarray, old_numbering, new_numbering); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 162--162 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 164--164 [] @texttt disarray& new_disarray) const // new_owne rship (already allocated)[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 165--165 [] @texttt { return base::data().permutation_apply (new_numbering, new_ disarray); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 167--167 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 168--168 [] @texttt disarray& inew2dis_iold) const // new_ownership[] [99] Overfull \hbox (129.91551pt too wide) in paragraph at lines 173--173 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 174--174 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 176--176 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 178--178 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 179--179 [] @texttt void dump (std::string name) const { return base::data().dump(na me); }[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 185--185 []@texttt class disarray : public smart_pointer > {[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 206--206 [] @texttt disarray (const distributor& ownership = distributor(), co nst T& init_val = T(), const A& alloc = A());[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 207--207 [] @texttt void resize (const distributor& ownership = distributor(), const T& init_val = T());[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 211--211 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 213--213 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 214--214 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 217--217 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 218--218 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 219--219 [] @texttt reference operator() (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 220--220 [] @texttt const_reference operator() (size_type i) const { return base::da ta().operator[] (i); }[] [100] Overfull \hbox (377.10909pt too wide) in paragraph at lines 230--230 [] @texttt void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().append_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (359.86302pt too wide) in paragraph at lines 233--233 [] @texttt void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().get_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 236--236 [] @texttt void append_dis_indexes (const Set& ext_idx_set) const { base::d ata().append_dis_indexes (ext_idx_set); }[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 240--240 [] @texttt void set_dis_indexes (const Set& ext_idx_set) const { base::d ata().set_dis_indexes (ext_idx_set); }[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 242--242 [] @texttt const T& dis_at (size_type dis_i) const { return base::data().di s_at (dis_i); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 245--245 [] @texttt const scatter_map_type& get_dis_map_entries() const { return bas e::data().get_dis_map_entries(); }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 249--249 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::data(). dis_entry(dis_i); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 252--252 [] @texttt void dis_entry_assembly_begin (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly_begin (my_set_op); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 254--254 [] @texttt void dis_entry_assembly_end (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly_end (my_set_op); }[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 256--256 [] @texttt void dis_entry_assembly (SetOp my_set_op = SetOp()) { base ::data().dis_entry_assembly (my_set_op); }[] Overfull \hbox (302.37614pt too wide) in paragraph at lines 258--258 [] @texttt void dis_entry_assembly_begin() { base::data().template dis_entr y_assembly_begin::type>(); }[] Overfull \hbox (290.87877pt too wide) in paragraph at lines 259--259 [] @texttt void dis_entry_assembly_end() { base::data().template dis_entr y_assembly_end::type>(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 260--260 [] @texttt void dis_entry_assembly() { dis_entry_assembly_begin(); di s_entry_assembly_end(); }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 265--265 [] @texttt void repartition ( // old_numbering for *this[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 267--267 [] @texttt disarray& new_disarray, // new_own ership (created)[] [101] Overfull \hbox (331.11958pt too wide) in paragraph at lines 270--270 [] @texttt { return base::data().repartition (partition.data(), new_dis array.data(), old_numbering.data(), new_numbering.data()); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 273--273 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 275--275 [] @texttt disarray& new_disarray) const // new_owne rship (already allocated)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 276--276 [] @texttt { base::data().permutation_apply (new_numbering.data(), new_ disarray.data()); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 278--278 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 279--279 [] @texttt disarray& inew2dis_iold) const // new_ownership[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 284--284 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 285--285 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 286--286 [] @texttt void dump (std::string name) const { return base::data().du mp(name); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 289--289 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 291--291 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 292--292 [] @texttt template odiststream& permuted_put _values ([] Overfull \hbox (239.14058pt too wide) in paragraph at lines 293--293 [] @texttt odiststream& ops, const disarray& perm, PutFunction put_element) const[] Overfull \hbox (428.84727pt too wide) in paragraph at lines 294--294 [] @texttt { return base::data().permuted_put_values (ops, perm.data(), put_element); }[] ) (../../skit/plib2/distributor.2texi [102] Overfull \hbox (14.94176pt too wide) in paragraph at lines 54--54 [] @texttt /// find iproc associated to a global index dis_i: CPU=log(n proc)[] [103]) (../../skit/plib2/diststream.2texi [104] Overfull \hbox (95.42339pt too wide) in paragraph at lines 81--81 [] @texttt io::mode_type mode = io::out, const communicator& comm = communicator());[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 83--83 [] @texttt io::mode_type mode, const communicator& comm = communi cator());[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 84--84 [] @texttt odiststream (std::string filename, std::string suffix, const commu nicator& comm);[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 86--86 [] @texttt odiststream(std::ostream& os, const communicator& comm = communica tor());[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 92--92 [] @texttt io::mode_type mode = io::out, const communicator& comm = communicator());[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 94--94 [] @texttt io::mode_type mode, const communicator& comm = communic ator());[] [105] Overfull \hbox (32.18782pt too wide) in paragraph at lines 129--129 [] @texttt idiststream (std::istream& is, const communicator& comm = communic ator());[] [106]) (../../skit/plib2/environment.2texi) (../../skit/plib2/eye.2texi) (../../skit/plib2/solver.2texi [107] [108] Overfull \hbox (158.65895pt too wide) in paragraph at lines 104--104 [] @texttt explicit solver_basic (const csr& a, const solver_option_type & opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 117--117 []@texttt solver_basic ldlt(const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 119--119 []@texttt solver_basic lu (const csr& a, const solver_option_type& opt = solver_option_type());[] [109] Overfull \hbox (147.16158pt too wide) in paragraph at lines 126--126 []@texttt solver_basic ic0 (const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (147.16158pt too wide) in paragraph at lines 128--128 []@texttt solver_basic ilu0(const csr& a, const solver_option_type& opt = solver_option_type());[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 130--130 []@texttt solver_basic ldlt_seq(const csr& a, const solver_option_ty pe& opt = solver_option_type());[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 132--132 []@texttt solver_basic lu_seq (const csr& a, const solver_option_ty pe& opt = solver_option_type());[] ) (../../skit/plib2/solver_abtb.2texi [110] Overfull \hbox (43.6852pt too wide) in paragraph at lines 66--66 [] @texttt solver_abtb_basic (const csr& a, const csr& b, const csr & mp,[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 69--69 [] @texttt solver_abtb_basic (const csr& a, const csr& b, const csr & c, const csr& mp,[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 75--75 [] @texttt void solve (const vec& f, const vec& g, vec& u, vec & p) const;[] [111]) (../../skit/plib2/solver_option_type.2texi Overfull \hbox (158.65895pt too wide) in paragraph at lines 19--19 [] @texttt static const long int decide = -1; // indicate the solver will try to choose the best method[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 23--23 [] @texttt mutable long int iterative; // indicate if we want to u se iterative solver[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 24--24 [] @texttt Float tol; // tolerance when using ite rative methode[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 25--25 [] @texttt size_type max_iter; // maximum number of iterat ion when using iterative method[] Overfull \hbox (319.62221pt too wide) in paragraph at lines 26--26 [] @texttt size_type n_refinement; // number of iterative refi nement, when using direct method (umfpack only support it)[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 27--27 [] @texttt bool compute_determinant; // compute also det, when using direct method[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 28--28 [] @texttt std::string prefered_library; // e.g. "umfpack", when ava ilable[] Overfull \hbox (371.3604pt too wide) in paragraph at lines 31--31 [] @texttt bool force_seq; // (still buggy; when using direct) restrict to diagonal blocs per process (e.g. mumps solver)[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 32--32 [] @texttt size_type level_of_fill; // (in development) Level o f fill [1:5] for incomplete factorisation[] Overfull \hbox (164.40764pt too wide) in paragraph at lines 33--33 [] @texttt size_type amalgamation; // (in development) Level o f amalgamation [10:70] for Kass[] Overfull \hbox (308.12483pt too wide) in paragraph at lines 34--34 [] @texttt size_type ooc; // (in development) out-of- core limit (Mo/percent depending on compilation options)[] [112]) (../../skit/plib2/vec.2texi Overfull \hbox (37.93651pt too wide) in paragraph at lines 33--33 [] @texttt typedef std::ptrdiff_t differe nce_type;[] [113] Overfull \hbox (37.93651pt too wide) in paragraph at lines 36--36 [] @texttt typedef typename base::const_reference const_r eference;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 38--38 [] @texttt typedef typename base::const_iterator const_i terator;[] [114] Overfull \hbox (14.94176pt too wide) in paragraph at lines 105--105 [] @texttt vec (const std::initializer_list >& init_l ist);[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 106--106 [] @texttt vec& operator= (const std::initializer_list >& init_list);[] ) (../../util/lib/rheostream.2texi [115] [116] Overfull \hbox (101.17207pt too wide) in paragraph at lines 144--144 []@texttt class irheostream : public boost::iostreams::filtering_stream {[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 146--146 [] @texttt irheostream() : boost::iostreams::filtering_stream() {}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 147--147 [] @texttt irheostream(const std::string& name, const std::string& suffix = std::string());[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 149--149 [] @texttt void open (const std::string& name, const std::string& suffix = std::string());[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 155--155 []@texttt class orheostream : public boost::iostreams::filtering_stream {[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 157--157 [] @texttt orheostream() : boost::iostreams::filtering_stream() {}[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 158--158 [] @texttt orheostream(const std::string& name, const std::string& suffix = std::string(),[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 161--161 [] @texttt void open (const std::string& name, const std::string& suffix = std::string(),[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 177--177 []@texttt bool scatch (std::istream& in, const std::string& ch, bool full_matc h = true);[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 183--183 []@texttt std::string delete_suffix (const std::string& name, const std::strin g& suffix);[] [117] Overfull \hbox (158.65895pt too wide) in paragraph at lines 192--192 []@texttt std::string get_full_name_from_rheo_path (const std::string& rootnam e, const std::string& suffix);[] ) Chapter 6 [118] (../../nfem/plib/adapt.4texi [119] Overfull \hbox (124.16682pt too wide) in paragraph at lines 115--115 [] @texttt Float anglecorner; // angle below which bamg considers 2 consec utive edge to be part of[] Overfull \hbox (204.64845pt too wide) in paragraph at lines 119--119 [] @texttt isotropic(true), err(1e-2), errg(1e-1), hcoef(1), hmin(0.000 1), hmax(0.3), ratio(0), cutoff(1e-7),[] [120] Overfull \hbox (89.6747pt too wide) in paragraph at lines 122--122 [] @texttt anisomax(1e6), clean(false), additional("-RelError"), double _precision(false),[] ) (../../nfem/plib/compose.4texi) (../../nfem/plib/damped_newton.4texi [121] Overfull \hbox (118.41814pt too wide) in paragraph at lines 34--34 []@texttt int damped_newton (Problem P, Field& u, Real& tol, Size& max_iter, o diststream* p_derr=0) {[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 35--35 [] @texttt return damped_newton(P, newton_identity_preconditioner(), u, tol, max_iter, p_derr);[] ) (../../nfem/plib/integrate.4texi [122] Overfull \hbox (7.51953pt too wide) in paragraph at lines 48--54 []@textrm The last ar-gu-ment spec-i-fies the quadra-ture for-mu-lae (see Sec-t ion 5.13 [quadra-ture[]option[]type ) (../../nfem/plib/interpolate.4texi [123]) (../../nfem/plib/level_set.4texi [124]) (../../nfem/plib/limiter.4texi) (../../nfem/plib/newton.4texi [125] Overfull \hbox (112.66945pt too wide) in paragraph at lines 43--43 []@texttt int newton (Problem P, Field& uh, Float& tol, size_t& max_iter, odis tstream *p_derr = 0) {[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 44--44 [] @texttt if (p_derr) *p_derr << "# Newton:" << std::endl << "# n r" << st d::endl << std::flush;[] ) (../../nfem/plib/riesz.4texi [126] [127] [128]) (../../skit/plib2/diag.4texi) (../../skit/plib2/dis_time.4texi [129]) (../../skit/plib2/mixed_solver.4texi Overfull \hbox (175.90501pt too wide) in paragraph at lines 20--20 [] @texttt template [] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21--21 [] @texttt int pcg_abtb (const Matrix& A, const Matrix& B, Vector& u, Vecto r& p,[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 26--26 [] @texttt template [] Overfull \hbox (118.41814pt too wide) in paragraph at lines 27--27 [] @texttt int pcg_abtbc (const Matrix& A, const Matrix& B, const Matrix& C , Vector& u, Vector& p,[] [130]) (../../skit/plib2/pcg.4texi Overfull \hbox (26.43913pt too wide) in paragraph at lines 12--12 [] @texttt template [] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14--14 [] @texttt const Preconditioner &M, int &max_iter, Real &tol, odiststream *p_derr=0);[] [131] Overfull \hbox (11.95166pt too wide) in paragraph at lines 57--63 @textrm Pozo, C. Romine, H. Van der Vorst, SIAM, 1994, @texttt ftp.netlib.org/t emplates/templates.ps[]@textrm . Overfull \hbox (98.24414pt too wide) in paragraph at lines 64--68 @textrm The present im-ple-men-ta-tion is in-spired from @texttt IML++ 1.2[] @t extrm it-er-a-tive method li-brary, @texttt http://math.nist.gov/iml++[]@textrm . Overfull \hbox (158.65895pt too wide) in paragraph at lines 73--73 []@texttt template [] Overfull \hbox (49.43388pt too wide) in paragraph at lines 74--74 []@texttt int pcg(const Matrix &A, Vector &x, const Vector2 &Mb, const Precond itioner &M,[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 75--75 [] @texttt Size &max_iter, Real &tol, odiststream *p_derr = 0, std::str ing label = "cg")[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 82--82 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 88--88 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << n << " " << sqrt(norm2_r/norm2_b) << std::endl;[] [132]) (../../skit/plib2/pgmres.4texi Overfull \hbox (78.17732pt too wide) in paragraph at lines 13--13 [] @texttt int pgmres (const Matrix &A, Vector &x, const Vector &b, const Pr econditioner &M,[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 27--27 [] @texttt int status = pgmres (a, x, b, ic0(a), H, dummy, m, max_iter, tol);[] [133] Overfull \hbox (98.24414pt too wide) in paragraph at lines 90--93 @textrm The present im-ple-men-ta-tion is in-spired from @texttt IML++ 1.2[] @t extrm it-er-a-tive method li-brary, @texttt http://math.nist.gov/iml++[]@textrm . Overfull \hbox (14.94176pt too wide) in paragraph at lines 102--102 []@texttt template [] [134] Overfull \hbox (37.93651pt too wide) in paragraph at lines 143--143 []@texttt pgmres (const Matrix &A, Vector &x, const Vector &b, const Precondit ioner &M,[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 144--144 [] @texttt SmallMatrix &H, const SmallVector&, const Size &m, Size &max_i ter, Real &tol,[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 156--156 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] # norm_b=" << norm_b < < std::endl;[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 157--157 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] [135] Overfull \hbox (141.41289pt too wide) in paragraph at lines 187--187 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << j << " " << r esidue/norm_b << std::endl;[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 200--200 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << j << " " << res idue/norm_b << std::endl;[] ) (../../skit/plib2/pminres.4texi Overfull \hbox (26.43913pt too wide) in paragraph at lines 12--12 [] @texttt template [] Overfull \hbox (89.6747pt too wide) in paragraph at lines 13--13 [] @texttt int pminres (const Matrix &A, Vector &x, const Vector &b, const Preconditioner &M,[] [136] Overfull \hbox (72.42863pt too wide) in paragraph at lines 62--62 []@texttt template [] Overfull \hbox (66.67995pt too wide) in paragraph at lines 63--63 []@texttt int pminres(const Matrix &A, Vector &x, const Vector &Mb, const Prec onditioner &M,[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 64--64 [] @texttt Size &max_iter, Real &tol, odiststream *p_derr = 0, std::string la bel = "minres")[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 74--74 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] # norm_b=" <[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13--13 [] @texttt int puzawa (const Matrix &A, Vector &x, const Vector &b, const P reconditioner &M,[] [139] Overfull \hbox (78.17732pt too wide) in paragraph at lines 58--58 []@texttt template < class Matrix, class Vector, class Preconditioner, class R eal, class Size>[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 59--59 []@texttt int puzawa(const Matrix &A, Vector &x, const Vector &Mb, const Preco nditioner &M,[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 67--67 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] #iteration residue" << std::endl;[] Overfull \hbox (193.15108pt too wide) in paragraph at lines 72--72 [] @texttt if (p_derr) (*p_derr) << "[" << label << "] " << n << " " << sqrt(norm2_r/norm2_b) << std::endl;[] ) (../../util/lib/catchmark.4texi [140] Overfull \hbox (55.18257pt too wide) in paragraph at lines 27--27 [] @texttt friend std::istream& operator >> (std::istream& is, const ca tchmark& m);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 28--28 [] @texttt friend std::ostream& operator << (std::ostream& os, const ca tchmark& m);[] ) Chapter 7 [141] [142] (../../nfem/plib/basis.7texi [143]) (../../nfem/plib/domain_indirect.7texi Overfull \hbox (158.65895pt too wide) in paragraph at lines 34--34 []@texttt class domain_indirect_basic : public smart_pointer > {[] [144] Overfull \hbox (181.6537pt too wide) in paragraph at lines 59--59 [] @texttt disarray >,sequen tial, heap_allocator >&[] [145] Overfull \hbox (204.64845pt too wide) in paragraph at lines 88--88 [] @texttt idiststream& get (idiststream& ips, const geo_rep& omega, std::vector *ball);[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 94--94 []@texttt class domain_indirect_basic : public smart_pointer > {[] [146] Overfull \hbox (37.93651pt too wide) in paragraph at lines 143--143 [] @texttt idiststream& get (idiststream& ips, const geo_rep & omega);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 145--145 [] @texttt odiststream& put (odiststream& ops, const geo_rep & omega) const;[] ) (../../nfem/plib/geo_domain.7texi) (../../nfem/plib/geo_domain_indirect.7texi [147]) (../../nfem/plib/numbering.7texi Overfull \hbox (43.6852pt too wide) in paragraph at lines 48--48 [] @texttt const basis_basic& get_basis() const { return base::data().get_ basis(); }[] [148] Overfull \hbox (204.64845pt too wide) in paragraph at lines 52--52 [] @texttt void dis_idof (const geo_size& gs, const geo_element& K, st d::vector& dis_idof) const;[] ) (../../nfem/geo_element/edge.7texi) (../../nfem/geo_element/geo_element.7texi [149]) (../../nfem/geo_element/hack_array.7texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 19--19 [] @texttt std::pair param (reference_element::t, 3); // tri angle, order=3[] [150] Overfull \hbox (72.42863pt too wide) in paragraph at lines 52--52 []@texttt class hack_array : public smart_pointer > {[] [151] Overfull \hbox (152.91026pt too wide) in paragraph at lines 73--73 [] @texttt hack_array (size_type loc_size, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 74--74 [] @texttt void resize (const distributor& ownership, const parameter_typ e& param);[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 75--75 [] @texttt hack_array (const distributor& ownership, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [] @texttt void resize (size_type loc_size, const parameter_typ e& param);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 80--80 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 82--82 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 83--83 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 86--86 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 87--87 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 89--89 [] @texttt const_reference dis_at (size_type dis_i) const { return base::da ta().operator[] (dis_i); }[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 98--98 [] @texttt template void append_dis_indexes (const Set& ext_idx_ set) const {}[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 103--103 [] @texttt dis_reference dis_entry (size_type dis_i) { return operator[] (d is_i); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 116--116 [] @texttt void repartition ( // old_numberin g for *this[] [152] Overfull \hbox (49.43388pt too wide) in paragraph at lines 118--118 [] @texttt hack_array& new_array, // new_ownershi p (created)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 121--121 [] @texttt { return base::data().repartition (partition, new_array, old _numbering, new_numbering); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 124--124 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 126--126 [] @texttt hack_array& new_array) const // new_owner ship (already allocated)[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 127--127 [] @texttt { return base::data().permutation_apply (new_numbering, new_ array); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 132--132 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 133--133 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 135--135 [] @texttt idiststream& get_values (idiststream& ips, GetFunction get_eleme nt) { return base::data().get_values(ips, get_element); }[] Overfull \hbox (348.36565pt too wide) in paragraph at lines 137--137 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const { return base::data().put_values(ops, put_element); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 139--139 [] @texttt void dump (std::string name) const { return base::data().dump(na me); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 146--146 []@texttt class hack_array : public smart_pointer > {[] [153] Overfull \hbox (152.91026pt too wide) in paragraph at lines 168--168 [] @texttt hack_array (const distributor& ownership, const parameter_type& param, const A& alloc = A());[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 169--169 [] @texttt void resize (const distributor& ownership, const parameter_typ e& param);[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 173--173 [] @texttt A get_allocator() const { return base::data().get_a llocator(); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 175--175 [] @texttt size_type dis_size () const { return base::data().dis_s ize(); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 176--176 [] @texttt const distributor& ownership() const { return base::data().owner ship(); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 179--179 [] @texttt reference operator[] (size_type i) { return base::da ta().operator[] (i); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 180--180 [] @texttt const_reference operator[] (size_type i) const { return base::da ta().operator[] (i); }[] Overfull \hbox (377.10909pt too wide) in paragraph at lines 190--190 [] @texttt void append_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().append_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (359.86302pt too wide) in paragraph at lines 193--193 [] @texttt void get_dis_entry (const Set& ext_idx_set, Map& ext_idx_map) const { base::data().get_dis_entry (ext_idx_set, ext_idx_map); }[] Overfull \hbox (221.89452pt too wide) in paragraph at lines 196--196 [] @texttt void append_dis_indexes (const Set& ext_idx_set) const { base::d ata().append_dis_indexes (ext_idx_set); }[] Overfull \hbox (175.90501pt too wide) in paragraph at lines 199--199 [] @texttt void set_dis_indexes (const Set& ext_idx_set) { base::data() .set_dis_indexes (ext_idx_set); }[] Overfull \hbox (112.66945pt too wide) in paragraph at lines 201--201 [] @texttt const_reference dis_at (size_type dis_i) const { return base::da ta().dis_at (dis_i); }[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 204--204 [] @texttt const scatter_map_type& get_dis_map_entries() const { return bas e::data().get_dis_map_entries(); }[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 206--206 [] @texttt void update_dis_entries() const { base::data().update_dis_entrie s(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 210--210 [] @texttt dis_reference dis_entry (size_type dis_i) { return base::d ata().dis_entry(dis_i); }[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 212--212 [] @texttt void dis_entry_assembly() { return base::d ata().dis_entry_assembly(); }[] [154] Overfull \hbox (244.88927pt too wide) in paragraph at lines 215--215 [] @texttt void dis_entry_assembly (SetOp my_set_op) { return base::d ata().dis_entry_assembly (my_set_op); }[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 217--217 [] @texttt void dis_entry_assembly_begin (SetOp my_set_op) { return base::d ata().dis_entry_assembly_begin (my_set_op); }[] Overfull \hbox (244.88927pt too wide) in paragraph at lines 219--219 [] @texttt void dis_entry_assembly_end (SetOp my_set_op) { return base::d ata().dis_entry_assembly_end (my_set_op); }[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 224--224 [] @texttt void repartition ( // old_numbering for *this[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 226--226 [] @texttt hack_array& new_array, // new_owne rship (created)[] Overfull \hbox (313.87352pt too wide) in paragraph at lines 229--229 [] @texttt { return base::data().repartition (partition.data(), new_arr ay.data(), old_numbering.data(), new_numbering.data()); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 233--233 [] @texttt void permutation_apply ( // old_numbering for *this[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 235--235 [] @texttt hack_array& new_array) const // new_owner ship (already allocated)[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 236--236 [] @texttt { base::data().permutation_apply (new_numbering.data(), new_ array.data()); }[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 238--238 [] @texttt void reverse_permutation ( // ol d_ownership for *this=iold2dis_inew[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 239--239 [] @texttt hack_array& inew2dis_iold) const // new_ownership[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 245--245 [] @texttt odiststream& put_values (odiststream& ops) const { return base:: data().put_values(ops); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 246--246 [] @texttt idiststream& get_values (idiststream& ips) { return base:: data().get_values(ips); }[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 248--248 [] @texttt void dump (std::string name) const { return base::data().du mp(name); }[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 255--255 [] @texttt odiststream& put_values (odiststream& ops, PutFunction put_eleme nt) const[] Overfull \hbox (106.92076pt too wide) in paragraph at lines 263--263 [] @texttt { return base::data().permuted_put_values (ops, perm.da ta(), put_element); }[] [155]) (../../nfem/geo_element/hexahedron.7texi [156]) (../../nfem/geo_element/point.7texi [157]) (../../nfem/geo_element/prism.7texi [158]) (../../nfem/geo_element/quadrangle.7texi [159]) (../../nfem/geo_element/quadrature.7texi [160] Overfull \hbox (20.69044pt too wide) in paragraph at lines 65--65 [] @texttt family_type get_family() const { return base::data().get_fami ly();}[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 66--66 [] @texttt std::string get_family_name() const { return base::data().get _family_name();}[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 67--67 [] @texttt const quadrature_option_type& get_options() const { return base: :data().get_options(); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 68--68 [] @texttt size_type size (reference_element hat_K) const { return ba se::data().size(hat_K); }[] Overfull \hbox (135.6642pt too wide) in paragraph at lines 69--69 [] @texttt const_iterator begin (reference_element hat_K) const { return ba se::data().begin(hat_K); }[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 70--70 [] @texttt const_iterator end (reference_element hat_K) const { return ba se::data().end(hat_K); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 71--71 [] @texttt const weighted_point& operator() (reference_element hat_K, si ze_type q) const[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 72--72 [] @texttt { return ba se::data().operator() (hat_K,q); }[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 74--74 [] @texttt friend std::ostream& operator<< (std::ostream& os, const quadrat ure& q) {[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [] @texttt base::data().side_initialize (tilde_K, loc_isid, hat_S, shift, orient);[] [161]) (../../nfem/geo_element/reference_element.7texi Overfull \hbox (66.67995pt too wide) in paragraph at lines 58--58 [] @texttt : _x(x) { assert_macro (x >= 0 && x <= max_variant, "invalid t ype " << x); }[] [162] Overfull \hbox (112.66945pt too wide) in paragraph at lines 63--63 [] @texttt void set_variant (size_type n_vertex, size_type dim) { _x = vari ant (n_vertex, dim); }[] Overfull \hbox (141.41289pt too wide) in paragraph at lines 72--72 [] @texttt size_type n_subgeo(size_type subgeo_dim) const { return n_subgeo (variant(), subgeo_dim); }[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 75--75 [] @texttt size_type subgeo_size (size_type subgeo_dim, size_type loc_isid) const {[] Overfull \hbox (210.39714pt too wide) in paragraph at lines 77--77 [] @texttt size_type subgeo_local_vertex(size_type subgeo_dim, size_type lo c_isid, size_type loc_jsidvert) const {[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 78--78 [] @texttt return subgeo_local_node (_x, 1, subgeo_dim, loc_isid, loc_j sidvert); }[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 84--84 [] @texttt void side_normal (size_type loc_isid, point_basic& hat_n) const;[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 90--90 [] @texttt static char name (variant_type variant) { return _na me [variant]; }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 91--91 [] @texttt static size_type dimension (variant_type variant) { return _di mension[variant]; }[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 92--92 [] @texttt static size_type n_vertex (variant_type variant) { return _n_ vertex [variant]; }[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 93--93 [] @texttt static size_type n_node (variant_type variant, size_type or der);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 97--97 [] @texttt static size_type n_subgeo (variant_type variant, size_type subgeo_dim);[] Overfull \hbox (267.88402pt too wide) in paragraph at lines 98--98 [] @texttt static size_type subgeo_n_node (variant_type variant, size_type order, size_type subgeo_dim, size_type loc_isid);[] Overfull \hbox (423.09859pt too wide) in paragraph at lines 99--99 [] @texttt static size_type subgeo_local_node (variant_type variant, size_t ype order, size_type subgeo_dim, size_type loc_isid, size_type loc_jsidnod);[] Overfull \hbox (239.14058pt too wide) in paragraph at lines 106--106 [] @texttt static size_type first_inod_by_variant (variant_type variant, si ze_type order, variant_type subgeo_variant);[] [163] Overfull \hbox (233.39189pt too wide) in paragraph at lines 107--107 [] @texttt static size_type last_inod_by_variant (variant_type variant, si ze_type order, variant_type subgeo_variant)[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 108--108 [] @texttt { return first_inod_by_variant (variant, order, subgeo_varian t+1); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 109--109 [] @texttt static size_type first_inod (variant_type variant, size_type ord er, size_type subgeo_dim)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 110--110 [] @texttt { return first_inod_by_variant (variant, order, first_variant _by_dimension(subgeo_dim)); }[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 111--111 [] @texttt static size_type last_inod (variant_type variant, size_type ord er, size_type subgeo_dim)[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 112--112 [] @texttt { return first_inod_by_variant (variant, order, last_variant _by_dimension(subgeo_dim)); }[] Overfull \hbox (382.85777pt too wide) in paragraph at lines 113--113 [] @texttt static void init_local_nnode_by_variant (size_type order, std::a rray& loc_nnod_by_variant);[] ) (../../nfem/geo_element/tetrahedron.7texi [164] [165]) (../../nfem/geo_element/triangle.7texi [166]) (../../skit/plib2/index_set.7texi [167] Overfull \hbox (89.6747pt too wide) in paragraph at lines 41--41 [] @texttt friend void set_union (const index_set& a, const index_set& b, index_set& c);[] Overfull \hbox (89.6747pt too wide) in paragraph at lines 42--42 [] @texttt friend void set_intersection (const index_set& a, const index_set& b, index_set& c);[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 47--47 [] @texttt friend std::ostream& operator<< (std::ostream& os, const index_set & x);[] ) (../../skit/plib2/pair_set.7texi Overfull \hbox (32.18782pt too wide) in paragraph at lines 16--16 []@texttt class pair_set: public std::map, A> {[] [168] Overfull \hbox (14.94176pt too wide) in paragraph at lines 40--40 [] @texttt pair_set& operator+= (const pair_type& x); // c := a unio n {x}[] ) (../../util/lib/Vector.7texi [169] [170] Overfull \hbox (49.43388pt too wide) in paragraph at lines 101--101 [] @texttt void insert (iterator position, const_iterator first, const_iter ator last);[] ) (../../util/lib/heap_allocator.7texi Overfull \hbox (147.16158pt too wide) in paragraph at lines 20--20 [] @texttt typedef map , heap_allocator > > map_type;[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 24--24 [] @texttt for (map_type::iterator iter = a.begin(), last = a.end(); iter ! = last; iter++) {[] [171] Overfull \hbox (14.94176pt too wide) in paragraph at lines 60--60 [] @texttt : handler ((typename heap_allocator::handler_type*)(ha.hand ler))[] [172] Overfull \hbox (129.91551pt too wide) in paragraph at lines 88--88 [] @texttt size_type max_size() const { return std::numeric_limits::max() / sizeof(T); }[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 97--97 [] @texttt // C++ 2011: default construct a value of type T at the location referenced by p[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 98--98 [] @texttt void construct (pointer p) { new ( reinterpret_cast(p) ) T(); }[] ) (../../util/lib/smart_pointer.7texi [173] Overfull \hbox (60.93126pt too wide) in paragraph at lines 81--81 [] @texttt Pour mieux developper avec C++ : design pattern, STL, RTTI et sm art pointers,[] [174] Overfull \hbox (14.94176pt too wide) in paragraph at lines 83--83 [] @texttt [2] STLplus, http://stlplus.sourceforge.net/stlplus3/docs/smart_ptr .html[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 126--126 [] @texttt int reference_counter() const { return _count != 0 ? _count->_n : -1; }[] ) (../../util/lib/stack_allocator.7texi [175] Overfull \hbox (35.10944pt too wide) in paragraph at lines 16--19 @textrm ex-cep-tion is em-mited. For a non-limited mem-ory han-dler in the same spirit, see @texttt "@textrm heap[]allocator@texttt "@textrm (9). Overfull \hbox (72.42863pt too wide) in paragraph at lines 24--24 [] @texttt stack_allocator stack_alloc (stack.begin().operator->(), stack.size());[] Overfull \hbox (152.91026pt too wide) in paragraph at lines 25--25 [] @texttt typedef map , stack_allocator > > map_type;[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 29--29 [] @texttt for (map_type::iterator iter = a.begin(), last = a.end(); iter ! = last; iter++) {[] [176] Overfull \hbox (20.69044pt too wide) in paragraph at lines 70--70 [] @texttt : handler ((typename stack_allocator::handler_type*)(sa.han dler))[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 99--99 [] @texttt size_type max_size() const { return std::numeric_limits::max() / sizeof(T); }[] [177] Overfull \hbox (78.17732pt too wide) in paragraph at lines 108--108 [] @texttt // C++ 2011: default construct a value of type T at the location referenced by p[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 109--109 [] @texttt void construct (pointer p) { new ( reinterpret_cast(p) ) T(); }[] [178] Overfull \hbox (32.18782pt too wide) in paragraph at lines 164--164 [] @texttt trace_macro ("stack_allocator::mem_info cstori: size="<>/doc/refman/FAQ.texi Chapter 10 [194] Overfull \hbox (10.36597pt too wide) in paragraph at lines 77--82 []@textrm the au-to-mat-i-cally gen-er-ated script, scan the ma-chine and tran s-late `@texttt config.h.in[]@textrm '[], [195] [196]) (/<>/doc/refman/gpl.texi Appendix @char @appendixno [197] [198] Underfull \hbox (badness 2368) in paragraph at lines 63--63 []@secrm TERMS AND CON-DI-TIONS FOR COPY-ING, [199] [200] [201] [202] [203] [204]) (Concept Index) [205] [206] (/<>/doc/refman/rheolef-refman.cps [207]) (Program Index) [208] (/<>/doc/refman/rheolef-refman.pgs) (Class Index) [209] [210] (/<>/doc/refman/rheolef-refman.cls) (Approximation Index) [211] [212] (/<>/doc/refman/rheolef-refman.aps) (Function Index) [213] [214] (/<>/doc/refman/rheolef-refman.fns) (File Format Index) [215] [216] (/<>/doc/refman/rheolef-refman.fis) (Related Tool Index) [217] [218] (/<>/doc/refman/rheolef-refman.tos [219]) [220] (/<>/doc/refman/rheolef-refman.toc) [-1] [-2] (/<>/doc/refman/rheolef-refman.toc [-3] [-4] [-5]) [-6] ) (see the transcript file for additional information) Output written on rheolef-refman.pdf (228 pages, 509456 bytes). Transcript written on rheolef-refman.log. /bin/bash /<>/config/install-sh -d "/<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc" if test -f rheolef-refman.pdf; then /bin/sh ../../config/install-sh -c -m 644 rheolef-refman.pdf "/<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc/rheolef-refman.pdf"; fi if test -f rheolef-refman.info; then /bin/sh ../../config/install-sh -c -m 644 rheolef-refman.info "/<>/debian/tmp-rheolef/usr/share/info/rheolef.info"; fi /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc' /bin/sh ../../config/install-sh -c -m 644 rheolef-refman.html '/<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc' /bin/mkdir -p '/<>/debian/tmp-rheolef/usr/share/info' make install-data-hook make[5]: Nothing to be done for 'install-data-hook'. Making install in pexamples make install-am make[5]: Nothing to be done for 'install-exec-am'. mkdir -p /<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc/examples rm -f /<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc/examples/* for f in Makefile.demo cosinusprod_laplace.icc cosinusrad_laplace.icc cosinusprod.icc cosinusprod_grad.icc cosinusrad.icc sinusprod_helmholtz.icc sphere.icc torus.icc torus.mshcad embankment.icc elasticity_solve.icc elasticity_criterion.icc line.mshcad square.mshcad cube.mshcad square.bamgcad square.dmn cavity.icc cavity_3d.icc dirichlet.icc contraction.mshcad poiseuille.h rotating-hill.h navier_stokes_solve.icc navier_stokes_criterion.icc streamf_cavity.icc p_laplacian.h p_laplacian1.icc p_laplacian2.icc p_laplacian_circle.icc eta.icc nu.icc p_laplacian_circle.icc runge_kutta_ssp.icc burgers.icc harten0.icc harten.icc burgers_flux_godunov.icc runge_kutta_semiimplicit.icc burgers_diffusion_exact.icc burgers_diffusion_operators.icc embankment_dg.icc stokes_dirichlet_dg.icc taylor.icc taylor_exact.icc inertia.icc inertia_cks.icc navier_stokes_dg.h navier_stokes_dg1.icc navier_stokes_dg2.icc inertia_upw.icc sgn.icc navier_stokes_upw_dg.h navier_stokes_upw_dg.icc cavity_dg.icc dirichlet.cc dirichlet-nh.cc neumann-nh.cc robin.cc helmholtz_s.cc helmholtz_band_iterative.cc transmission.cc embankment.cc stress.cc embankment_adapt.cc stokes_cavity.cc stokes_cavity_incompressible.cc vorticity.cc incompressible-elasticity.cc stokes_contraction.cc stokes_contraction_bubble.cc streamf_contraction.cc heat.cc convect.cc navier_stokes_cavity.cc p_laplacian_fixed_point.cc p_laplacian_newton.cc p_laplacian_damped_newton.cc level_set_sphere.cc transport_dg.cc harten_show.cc burgers_dg.cc dirichlet_dg.cc neumann_dg.cc burgers_diffusion_dg.cc elasticity_taylor_dg.cc embankment_dg.cc stokes_taylor_dg.cc neumann-laplace.cc stokes_contraction_bubble_old.cc helmholtz_band.cc laplace_s.cc laplace_band.cc navier_stokes_taylor_dg.cc navier_stokes_taylor_cks_dg.cc navier_stokes_taylor_newton_dg.cc streamf_cavity.cc convect_error.cc cosinusprod_error.cc vortex_position.cc helmholtz_s_error.cc p_laplacian_error.cc proj_band.cc transport_dg_error.cc transport_dg2_error.cc cosinusprod_error_dg.cc cosinusprod_post_dg.cc sinusprod_error_dg.cc elasticity_taylor_error_dg.cc stokes_taylor_error_dg.cc navier_stokes_taylor_error_dg.cc cosinusrad_error.cc dirichlet_nh_ball.cc navier_stokes_cavity_newton_dg.cc navier_stokes_cavity_newton_upw_dg.cc; do \ /bin/sh ../../config/install-sh -c -m 644 ./$f /<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc/examples/$f; \ done cd /<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc/examples; \ mv Makefile.demo Makefile Making install in pusrman make[4]: Nothing to be done for 'install-exec-am'. Updating version.tex if test x"YES" = x"YES"; then \ echo "\\usepackage{hyperref}" > have_hyperref.tex; \ else \ echo "\\newcommand{\url}[1]{{\\tt {#1}}}" > have_hyperref.tex; \ fi /bin/rm -f rheolef.aux rheolef.idx rheolef.ind /bin/rm -f rheolef.toc rheolef.lot rheolef.lof if test x"pdflatex" != x"" -a x"bibtex" != x"" \ -a x"makeindex" != x""; then \ TEXINPUTS=":.:./:../../doc/pexamples/:$TEXINPUTS"; \ BIBINPUTS=":.:./:../../doc/pexamples/:$TEXINPUTS"; \ export TEXINPUTS BIBINPUTS; \ rm -f rheolef.idx; \ rm -f rheolef.bbl rheolef.aux rheolef.toc rheolef.lof; \ rm -f rheolef.cnd rheolef.exd rheolef.fod rheolef.prd; \ rm -f rheolef.cnx rheolef.exx rheolef.fox rheolef.prx; \ pdflatex rheolef \ && (x=rheolef; \ for f in `/bin/ls ${x}.*aux`; do \ g=`expr $f : '\(.*\)\.aux' `; \ if test `grep '\citation' $f | wc -l` -gt 0; then \ echo "autobib $g"; \ mv ./rheolef-autobib.bib ./rheolef-autobib.bib.old 2>/dev/null || \ touch ./rheolef-autobib.bib.old; \ (autobib $g && mv autobib.bib ./rheolef-autobib.bib) ||\ mv ./rheolef-autobib.bib.old ./rheolef-autobib.bib ; \ echo "bibtex $g"; \ bibtex $g | tee $g.biblog; \ if grep -i warning $g.biblog >/dev/null; then exit 1; else true; fi; \ if grep -i error $g.biblog >/dev/null; then exit 1; else true; fi; \ fi; \ done ) \ && bibtex rheolef \ && makeindex -o rheolef.cnd rheolef.cnx \ && makeindex -o rheolef.exd rheolef.exx \ && makeindex -o rheolef.prd rheolef.prx \ && pdflatex rheolef \ && pdflatex rheolef \ && pdflatex rheolef \ && (col -b < rheolef.log 2>/dev/null | grep Warning | tee rheolef-warnings.log || true) \ && test `grep -aiv rheolef-warnings.log \ -e 'float' \ -e 'You have requested' \ -e 'Foreign command' \ -e 'Font Warning' \ -e 'hyperref' \ -e 'pagebackref' \ -e 'marginpar' \ -e 'minitoc' \ -e 'has changed' \ | wc -l` -eq 0; \ else \ true; \ fi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./rheolef.tex LaTeX2e <2017-04-15> Babel <3.14> and hyphenation patterns for 7 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (./rheolef.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/a4wide/a4wide.sty (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty)) (/usr/share/texlive/texmf-dist/tex/latex/index/index.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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Transcript written on rheolef.log. autobib rheolef /bin/bash: line 17: autobib: command not found bibtex rheolef This is BibTeX, Version 0.99d (TeX Live 2017/Debian) The top-level auxiliary file: rheolef.aux The style file: plain.bst Database file #1: rheolef.bib Database file #2: rheolef-autobib.bib This is BibTeX, Version 0.99d (TeX Live 2017/Debian) The top-level auxiliary file: rheolef.aux The style file: plain.bst Database file #1: rheolef.bib Database file #2: rheolef-autobib.bib This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning input file rheolef.cnx....done (382 entries accepted, 0 rejected). Sorting entries......done (3452 comparisons). Generating output file rheolef.cnd....done (343 lines written, 0 warnings). Output written in rheolef.cnd. Transcript written in rheolef.ilg. This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning input file rheolef.exx....done (80 entries accepted, 0 rejected). 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Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/cm-super/cm-super-t1.enc} < /usr/share/texmf/fonts/type1/public/cm-super/sfbx2074.pfb> Output written on rheolef.pdf (176 pages, 12990407 bytes). Transcript written on rheolef.log. This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./rheolef.tex LaTeX2e <2017-04-15> Babel <3.14> and hyphenation patterns for 7 language(s) loaded. 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Rerun to get cross-references right. ) (see the transcript file for additional information)pdfTeX warning (dest): name {section.8.3} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{section.A.2} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{section.4.4} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{section.4.1} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{equation.4.1.2} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{equation.2.2.2} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{section*.52} has been referenced but does not exist , replaced by a fixed one {/usr/share/texmf/fonts/enc/dvips/cm-super/cm-super-t1.enc} < /usr/share/texmf/fonts/type1/public/cm-super/sftt1000.pfb> Output written on rheolef2-dg.pdf (62 pages, 8578839 bytes). Transcript written on rheolef2-dg.log. autobib rheolef2-dg /bin/bash: line 17: autobib: command not found bibtex rheolef2-dg This is BibTeX, Version 0.99d (TeX Live 2017/Debian) The top-level auxiliary file: rheolef2-dg.aux The style file: plain.bst Database file #1: rheolef.bib Database file #2: rheolef2-dg-autobib.bib This is BibTeX, Version 0.99d (TeX Live 2017/Debian) The top-level auxiliary file: rheolef2-dg.aux The style file: plain.bst Database file #1: rheolef.bib Database file #2: rheolef2-dg-autobib.bib This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning input file rheolef2-dg.cnx....done (44 entries accepted, 0 rejected). Sorting entries....done (247 comparisons). Generating output file rheolef2-dg.cnd....done (69 lines written, 0 warnings). Output written in rheolef2-dg.cnd. Transcript written in rheolef2-dg.ilg. This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). 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Rerun to get cross-references right. ) (see the transcript file for additional information)pdfTeX warning (dest): name {section.8.3} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{section.A.2} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{section.4.4} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{section.4.1} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{equation.4.1.2} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{equation.2.2.2} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{section*.52} has been referenced but does not exist , replaced by a fixed one {/usr/share/texmf/fonts/enc/dvips/cm-super/cm-super-t1.enc} < /usr/share/texmf/fonts/type1/public/cm-super/sftt1000.pfb> Output written on rheolef2-dg.pdf (66 pages, 8605694 bytes). 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<./navier-stokes-dg-cavity-80-P1d-Re=1000- upw-psi.pdf> <./navier-stokes-dg-cavity-80-P1d-Re=2000-upw-psi.pdf>] [51 <./nav ier-stokes-dg-cavity-80-P1d-Re=3200-upw-psi.pdf> <./navier-stokes-dg-cavity-80- P1d-Re=5000-upw-psi.pdf> <./navier-stokes-dg-cavity-80-P1d-Re=7500-upw-psi.pdf> ] [52 <./navier-stokes-dg-cavity-80-P1d-Re=15000-upw-psi.pdf> <./navier-stokes- dg-cavity-80-P1d-Re=20000-upw-psi.pdf> <./navier-stokes-dg-cavity-80-P1d-Re=250 00-upw-psi.pdf>] [53] [54] (./fdl.tex Appendix A. Underfull \hbox (badness 10000) in paragraph at lines 7--8 [55] [56] [57] [58] [59]) Underfull \vbox (badness 10000) has occurred while \output is active [60] (./rheolef2-dg.bbl (./rheolef2-dg.brf) [61]) (./rheolef2-dg.exd [62] Overfull \hbox (2.18655pt too wide) in paragraph at lines 1--66 []\T1/cmtt/m/n/10 navier_stokes_cavity_newton_upw_dg.cc\T1/cmr/m/n/10 , [63]) (./rheolef2-dg.prd) (./rheolef2-dg.cnd [64]) (./rheolef2-dg.aux) ) (see the transcript file for additional information)pdfTeX warning (dest): name {section.8.3} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{section.A.2} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{section.4.4} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{section.4.1} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{equation.4.1.2} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{equation.2.2.2} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{section*.52} has been referenced but does not exist , replaced by a fixed one {/usr/share/texmf/fonts/enc/dvips/cm-super/cm-super-t1.enc} < /usr/share/texmf/fonts/type1/public/cm-super/sftt1000.pfb> Output written on rheolef2-dg.pdf (66 pages, 8608886 bytes). Transcript written on rheolef2-dg.log. Package hyperref Warning: Option `pagebackref' has already been used, Package hyperref Warning: Option `hyperindex' has already been used, if test x"pdflatex" != x""; then \ TEXINPUTS=":.:./:$TEXINPUTS"; \ pdflatex ./synthese.tex; \ fi This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./synthese.tex LaTeX2e <2017-04-15> Babel <3.14> and hyphenation patterns for 7 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/letter.cls Document Class: letter 2014/09/29 v1.2z Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/a4wide/a4wide.sty (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) No file synthese.aux. 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Transcript written on synthese.log. mkdir -p /<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc for x in rheolef.pdf rheolef2-dg.pdf; do \ if test -f ${x}; then \ /bin/sh ../../config/install-sh -c -m 644 ${x} /<>/debian/tmp-rheolef/usr/share/doc/rheolef-doc/${x}; \ fi; \ done Making install in doxygen make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[1]: Leaving directory '/<>' dh_movefiles --sourcedir=debian/tmp-rheolef # removing some useless progs rm -f debian/tmp-rheolef/usr/bin/doc2man rm -f debian/tmp-rheolef/usr/bin/doc2texi rm -f debian/tmp-rheolef/usr/bin/doc2oxy # remove info/dir rm -f debian/tmp-rheolef/usr/share/info/dir* # delete rpath (debian policy) if any: chrpath -d debian/tmp-rheolef/usr/bin/branch chrpath -d debian/tmp-rheolef/usr/bin/field chrpath -d debian/tmp-rheolef/usr/bin/geo chrpath -d debian/tmp-rheolef/usr/bin/csr chrpath -d debian/tmp-rheolef/usr/lib/librheolef.*so* chrpath -d debian/tmp-rheolef/usr/lib/rheolef/mkgeo_* chrpath -d debian/tmp-rheolef/usr/lib/rheolef/msh2geo_int chrpath -d debian/tmp-rheolef/usr/lib/rheolef/mkgeo_ball_gmsh_fix # Changing file access permissions chmod 755 debian/tmp-rheolef/usr/share/rheolef/check-shlibpath_var.sh touch install-stamp dh_testdir -a dh_testroot -a dh_install -a --sourcedir=debian/tmp-rheolef dh_lintian -a dh_installinfo -a dh_installman -a dh_installexamples -a dh_makeshlibs -a dh_shlibdeps -a --dpkg-shlibdeps-params="--ignore-missing-info" dpkg-shlibdeps: warning: symbol _ZSt28_Rb_tree_rebalance_for_erasePSt18_Rb_tree_node_baseRS_ used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZSt18uncaught_exceptionv used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7replaceEmmPKcm used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEE7_M_syncEPcmm used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZSt17iostream_categoryv used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZdlPv used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNSt9basic_iosIcSt11char_traitsIcEE4initEPSt15basic_streambufIcS1_E used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNSt9basic_iosIcSt11char_traitsIcEE5rdbufEPSt15basic_streambufIcS1_E used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTVNSt7__cxx1118basic_stringstreamIcSt11char_traitsIcESaIcEEE used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol __cxa_end_catch used by debian/librheolef1/usr/lib/librheolef.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: 210 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/rheolef/usr/bin/field debian/rheolef/usr/bin/geo debian/rheolef/usr/bin/branch debian/rheolef/usr/lib/rheolef/msh2geo_int debian/rheolef/usr/lib/rheolef/mkgeo_ball_gmsh_fix were not linked against libptscotchparmetis-6.so (they use none of the library's symbols) dh_installdocs -a dh_installchangelogs -a ChangeLog dh_compress -a -X.pdf dh_strip -a dh_link -a dh_fixperms -a dh_installdeb -a dh_gencontrol -a --dpkg-gencontrol-params="-Tdebian/librheolef1.substvars" dpkg-gencontrol: warning: package librheolef-dev: unused substitution variable ${shlibs:Depends} dh_md5sums -a dh_builddeb -a || true INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing rheolef-dbgsym (in debian/.debhelper/rheolef/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing librheolef1 (in debian/librheolef1); do_strip: , oemstrip: pkgstriptranslations: processing librheolef-dev (in debian/librheolef-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/rheolef/dbgsym-root/DEBIAN/control, package rheolef-dbgsym, directory debian/.debhelper/rheolef/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package rheolef-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'rheolef-dbgsym' in 'debian/.debhelper/scratch-space/build-rheolef/rheolef-dbgsym_6.7-4_s390x.deb'. pkgstripfiles: processing control file: debian/librheolef1/DEBIAN/control, package librheolef1, directory debian/librheolef1 .. removing usr/share/doc/librheolef1/changelog.gz pkgstripfiles: Truncating usr/share/doc/librheolef1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package librheolef1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librheolef1' in '../librheolef1_6.7-4_s390x.deb'. Renaming rheolef-dbgsym_6.7-4_s390x.deb to rheolef-dbgsym_6.7-4_s390x.ddeb INFO: pkgstriptranslations version 131 pkgstriptranslations: processing librheolef1-dbgsym (in debian/.debhelper/librheolef1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/librheolef1/dbgsym-root/DEBIAN/control, package librheolef1-dbgsym, directory debian/.debhelper/librheolef1/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package librheolef1-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librheolef1-dbgsym' in 'debian/.debhelper/scratch-space/build-librheolef1/librheolef1-dbgsym_6.7-4_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/librheolef-dev/DEBIAN/control, package librheolef-dev, directory debian/librheolef-dev .. removing usr/share/doc/librheolef-dev/changelog.gz Searching for duplicated docs in dependency librheolef1... symlinking changelog.Debian.gz in librheolef-dev to file in librheolef1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package librheolef-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'librheolef-dev' in '../librheolef-dev_6.7-4_s390x.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing rheolef (in debian/rheolef); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/rheolef/DEBIAN/control, package rheolef, directory debian/rheolef .. removing usr/share/doc/rheolef/changelog.gz Searching for duplicated docs in dependency librheolef-dev... symlinking changelog.Debian.gz in rheolef to file in librheolef1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package rheolef ... pkgstripfiles: No PNG files. dpkg-deb: building package 'rheolef' in '../rheolef_6.7-4_s390x.deb'. Renaming librheolef1-dbgsym_6.7-4_s390x.deb to librheolef1-dbgsym_6.7-4_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../rheolef_6.7-4_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build rheolef-6.7 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171127-2327 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ rheolef_6.7-4_s390x.changes: ---------------------------- Format: 1.8 Date: Sat, 11 Nov 2017 08:16:06 +0100 Source: rheolef Binary: librheolef1 librheolef-dev rheolef-doc rheolef Architecture: s390x Version: 6.7-4 Distribution: bionic-proposed Urgency: low Maintainer: Launchpad Build Daemon Changed-By: Pierre Saramito Description: librheolef-dev - efficient Finite Element environment - development files librheolef1 - efficient Finite Element environment - shared library rheolef - efficient Finite Element environment rheolef-doc - efficient Finite Element environment - documentation Closes: 871811 Changes: rheolef (6.7-4) unstable; urgency=low . * patches: - cgal-4-11.pach: supports experimental libcgal >= 4.11 (closes: #871811) thanks to Joachim Reichel - mpi-autodetect.patch: fixes openmpi and libscotch autodetection in autoconf files * rules: add -g compilation flag for debug symbols * control: Standards-Version updated to 4.1.1 * compat: debhelper version updated to 9 Checksums-Sha1: 3783c74d4aa7d9da1dbe27d5cd626d6ac2b7c7f7 308592 librheolef-dev_6.7-4_s390x.deb a59992401d95f886827b2bd04544cc53532d71f3 36912080 librheolef1-dbgsym_6.7-4_s390x.ddeb 9070b9beeaaf9f11e5e84c07e745e491cc6e9fc6 1100172 librheolef1_6.7-4_s390x.deb ac2ba9fdde4c1fd573c66b361e09fb04a8fcd15b 4797152 rheolef-dbgsym_6.7-4_s390x.ddeb 5888ce32091bee1f866c7834412101ecf1bedbce 12601 rheolef_6.7-4_s390x.buildinfo 29e9010c91ca21242b4a4b2aa828d1500cdcb575 432468 rheolef_6.7-4_s390x.deb Checksums-Sha256: f21b9e8f4c29db2dc4b8bcce74e0d070b960cb8f20c5ec44c84d8c5923e5a03a 308592 librheolef-dev_6.7-4_s390x.deb b10b7fe4b3f60f15df4c472ba804e4f53a028384cc994e51ee59bb941e9c08c9 36912080 librheolef1-dbgsym_6.7-4_s390x.ddeb b9eea1f2b26b1f72fba9d023d79b3aff0c10e9a0902e6a2771451a02a1481f05 1100172 librheolef1_6.7-4_s390x.deb 7748f0e68045aed621ae497fc6139f4f6396b16835db40bfe27004f8f2eb8417 4797152 rheolef-dbgsym_6.7-4_s390x.ddeb 408001c83680376a2602efb9e1eb9ecf6c8c7dc4abed0892ec304a4565d3ba9d 12601 rheolef_6.7-4_s390x.buildinfo aae4ed6f02ec7cf9b3af74ac084beced99ca929a647874637ea0e3dbee99982e 432468 rheolef_6.7-4_s390x.deb Files: 1973d508e6ed115460d16357f5d729ed 308592 libdevel optional librheolef-dev_6.7-4_s390x.deb 6c34b0bf35104c415f76029230de3787 36912080 debug optional librheolef1-dbgsym_6.7-4_s390x.ddeb eeed230bb5268e372d70a2873c35fa2a 1100172 libs optional librheolef1_6.7-4_s390x.deb f620187ac40e1922f4903e483f7e1935 4797152 debug optional rheolef-dbgsym_6.7-4_s390x.ddeb 3fc8e51f0924a1e53512dffff44a99c4 12601 math optional rheolef_6.7-4_s390x.buildinfo 12cb1db8532baee88806e3acfc9ce991 432468 math optional rheolef_6.7-4_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ librheolef-dev_6.7-4_s390x.deb ------------------------------ new debian package, version 2.0. size 308592 bytes: control archive=8432 bytes. 2033 bytes, 41 lines control 20437 bytes, 287 lines md5sums Package: librheolef-dev Source: rheolef Version: 6.7-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 1887 Depends: librheolef1 (= 6.7-4), g++, libboost-dev, libboost-iostreams-dev, libboost-mpi-dev, libcgal-dev, liblapack-dev, libscotch-dev, libptscotch-dev, libsuitesparse-dev, libmumps-ptscotch-dev, libmumps-scotch-dev Recommends: rheolef-doc (= 6.7-4) Breaks: rheolef (<< 6.4) Replaces: rheolef (<< 6.4) Section: libdevel Priority: optional Homepage: http://ljk.imag.fr/membres/Pierre.Saramito/rheolef Description: efficient Finite Element environment - development files Rheolef is a computer environment that serves as a convenient laboratory for computations in applied mathematics involving finite element-like methods. It provides a set of commands and C++ algorithms and containers. . Most basically, containers cover the classic graph data structure for sparse matrix formats and finite element meshes. At a higher level of abstraction, they can handle approximate finite element spaces, discrete fields. Flexible and powerful expressions are used to specify bilinear forms. . Current applications include: * massively distributed memory finite element environment, based on MPI; * Poisson problems in d=1,2 and 3 dimension with high order Lagrange elements, up to fifth order; * linear elasticity, including incompressible and nearly incompressible elasticity; * Stokes problems in d=2 or 3 dimension, with P2-P1 or P1 bubble-P1 elements; * characteristic method for convection-diffusion, time-dependent problems and Navier-Stokes equations; * nonlinear problems with either fixed-point algorithms or a provided generic damped Newton solver; * auto-adaptive mesh approaches; * axisymmetric problems; * multi-regions and variable coefficient problems. . This package provides the headers required for development. drwxr-xr-x root/root 0 2017-11-11 07:16 ./ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/bin/ -rwxr-xr-x root/root 7701 2017-11-11 07:16 ./usr/bin/rheolef-config drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/include/ lrwxrwxrwx root/root 0 2017-11-11 07:16 ./usr/include/rheolef.h -> rheolef/rheolef.h drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/include/rheolef/ -rw-r--r-- root/root 13309 2017-11-11 07:16 ./usr/include/rheolef/Vector.h -rw-r--r-- root/root 5951 2017-11-11 07:16 ./usr/include/rheolef/adapt.h -rw-r--r-- root/root 7016 2017-11-11 07:16 ./usr/include/rheolef/asr.h -rw-r--r-- root/root 2985 2017-11-11 07:16 ./usr/include/rheolef/asr_to_csr.h -rw-r--r-- root/root 3414 2017-11-11 07:16 ./usr/include/rheolef/asr_to_csr_dist_logical.h -rw-r--r-- root/root 3895 2017-11-11 07:16 ./usr/include/rheolef/band.h -rw-r--r-- root/root 7268 2017-11-11 07:16 ./usr/include/rheolef/basis.h -rw-r--r-- root/root 4524 2017-11-11 07:16 ./usr/include/rheolef/basis_on_pointset.h -rw-r--r-- root/root 5711 2017-11-11 07:16 ./usr/include/rheolef/basis_symbolic.h -rw-r--r-- root/root 25003 2017-11-11 07:16 ./usr/include/rheolef/branch.h -rw-r--r-- root/root 2687 2017-11-11 07:16 ./usr/include/rheolef/catchmark.h -rw-r--r-- root/root 13024 2017-11-11 07:16 ./usr/include/rheolef/cgal_kernel.h -rw-r--r-- root/root 4134 2017-11-11 07:16 ./usr/include/rheolef/cgal_kernel_float128.h -rw-r--r-- root/root 1835 2017-11-11 07:16 ./usr/include/rheolef/cgal_traits.h -rw-r--r-- root/root 8377 2017-11-11 07:16 ./usr/include/rheolef/characteristic.h -rw-r--r-- root/root 11447 2017-11-11 07:16 ./usr/include/rheolef/compiler.h -rw-r--r-- root/root 8316 2017-11-11 07:16 ./usr/include/rheolef/compose.h -rw-r--r-- root/root 1859 2017-11-11 07:16 ./usr/include/rheolef/container_traits.h -rw-r--r-- root/root 28737 2017-11-11 07:16 ./usr/include/rheolef/csr.h -rw-r--r-- root/root 2882 2017-11-11 07:16 ./usr/include/rheolef/csr_amux.h -rw-r--r-- root/root 8603 2017-11-11 07:16 ./usr/include/rheolef/csr_concat.h -rw-r--r-- root/root 2773 2017-11-11 07:16 ./usr/include/rheolef/csr_cumul_trans_mult.h -rw-r--r-- root/root 2816 2017-11-11 07:16 ./usr/include/rheolef/csr_to_asr.h -rw-r--r-- root/root 1104 2017-11-11 07:16 ./usr/include/rheolef/csr_vec_expr.h -rw-r--r-- root/root 3019 2017-11-11 07:16 ./usr/include/rheolef/damped-newton-generic.h -rw-r--r-- root/root 3025 2017-11-11 07:16 ./usr/include/rheolef/damped_newton.h -rw-r--r-- root/root 4822 2017-11-11 07:16 ./usr/include/rheolef/dia.h -rw-r--r-- root/root 1632 2017-11-11 07:16 ./usr/include/rheolef/diag.h -rw-r--r-- root/root 3195 2017-11-11 07:16 ./usr/include/rheolef/dis_accumulate.h -rw-r--r-- root/root 4137 2017-11-11 07:16 ./usr/include/rheolef/dis_inner_product.h -rw-r--r-- root/root 4332 2017-11-11 07:16 ./usr/include/rheolef/dis_macros.h -rw-r--r-- root/root 3166 2017-11-11 07:16 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./usr/share/man/man8/ -rw-r--r-- root/root 3071 2017-11-11 07:16 ./usr/share/man/man8/iorheo.8rheolef.gz -rw-r--r-- root/root 747 2017-11-11 07:16 ./usr/share/man/man8/pretty_name.8rheolef.gz drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/man/man9/ -rw-r--r-- root/root 4852 2017-11-11 07:16 ./usr/share/man/man9/acinclude.9rheolef.gz librheolef1_6.7-4_s390x.deb --------------------------- new debian package, version 2.0. size 1100172 bytes: control archive=1596 bytes. 1909 bytes, 39 lines control 421 bytes, 6 lines md5sums 25 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: librheolef1 Source: rheolef Version: 6.7-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 4795 Depends: libamd2 (>= 4.5.2), libboost-iostreams1.65.1, libc6 (>= 2.17), libcgal12, libgcc1 (>= 1:3.0), libgmp10, libmumps-ptscotch-5.1.1, libopenmpi2, libumfpack5 (>= 4.5.2) Suggests: rheolef-doc (= 6.7-4) Section: libs Priority: optional Homepage: http://ljk.imag.fr/membres/Pierre.Saramito/rheolef Description: efficient Finite Element environment - shared library Rheolef is a computer environment that serves as a convenient laboratory for computations in applied mathematics involving finite element-like methods. It provides a set of commands and C++ algorithms and containers. . Most basically, containers cover the classic graph data structure for sparse matrix formats and finite element meshes. At a higher level of abstraction, they can handle approximate finite element spaces, discrete fields. Flexible and powerful expressions are used to specify bilinear forms. . Current applications include: * massively distributed memory finite element environment, based on MPI; * Poisson problems in d=1,2 and 3 dimension with high order Lagrange elements, up to fifth order; * linear elasticity, including incompressible and nearly incompressible elasticity; * Stokes problems in d=2 or 3 dimension, with P2-P1 or P1 bubble-P1 elements; * characteristic method for convection-diffusion, time-dependent problems and Navier-Stokes equations; * nonlinear problems with either fixed-point algorithms or a provided generic damped Newton solver; * auto-adaptive mesh approaches; * axisymmetric problems; * multi-regions and variable coefficient problems. . This package provides the shared library. drwxr-xr-x root/root 0 2017-11-11 07:16 ./ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/lib/ lrwxrwxrwx root/root 0 2017-11-11 07:16 ./usr/lib/librheolef.so.1 -> librheolef.so.1.0.0 -rw-r--r-- root/root 4876368 2017-11-11 07:16 ./usr/lib/librheolef.so.1.0.0 drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/doc/librheolef1/ -rw-r--r-- root/root 1336 2016-06-10 14:40 ./usr/share/doc/librheolef1/NEWS.gz -rw-r--r-- root/root 655 2013-03-08 07:39 ./usr/share/doc/librheolef1/README -rw-r--r-- root/root 39 2017-08-07 16:18 ./usr/share/doc/librheolef1/README.Debian -rw-r--r-- root/root 1978 2017-11-11 07:16 ./usr/share/doc/librheolef1/changelog.Debian.gz -rw-r--r-- root/root 2804 2017-08-07 16:18 ./usr/share/doc/librheolef1/copyright rheolef_6.7-4_s390x.deb ----------------------- new debian package, version 2.0. size 432468 bytes: control archive=2200 bytes. 2174 bytes, 42 lines control 1832 bytes, 29 lines md5sums Package: rheolef Version: 6.7-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 1846 Depends: libamd2 (>= 4.5.2), libboost-iostreams1.65.1, libc6 (>= 2.17), libcgal12, libgcc1 (>= 1:3.0), libgmp10, libmumps-ptscotch-5.1.1, libopenmpi2, libumfpack5 (>= 4.5.2), librheolef-dev (= 6.7-4), rheolef-doc (= 6.7-4) Recommends: gmsh, gnuplot-x11, paraview, paraview-python, mayavi2 Breaks: rheolef-dev (<< 6.4) Replaces: rheolef-dev (<< 6.4) Section: math Priority: optional Homepage: http://ljk.imag.fr/membres/Pierre.Saramito/rheolef Description: efficient Finite Element environment Rheolef is a computer environment that serves as a convenient laboratory for computations in applied mathematics involving finite element-like methods. It provides a set of commands and C++ algorithms and containers. . Most basically, containers cover the classic graph data structure for sparse matrix formats and finite element meshes. At a higher level of abstraction, they can handle approximate finite element spaces, discrete fields. Flexible and powerful expressions are used to specify bilinear forms. . Current applications include: * massively distributed memory finite element environment, based on MPI; * Poisson problems in d=1,2 and 3 dimension with high order Lagrange elements, up to fifth order; * linear elasticity, including incompressible and nearly incompressible elasticity; * Stokes problems in d=2 or 3 dimension, with P2-P1 or P1 bubble-P1 elements; * characteristic method for convection-diffusion, time-dependent problems and Navier-Stokes equations; * nonlinear problems with either fixed-point algorithms or a provided generic damped Newton solver; * auto-adaptive mesh approaches; * axisymmetric problems; * multi-regions and variable coefficient problems. . This package provides the rheolef commands. These support input and output in various file formats for mesh-generators and numerical data visualization systems such as MayaVi, Paraview, and gnuplot. drwxr-xr-x root/root 0 2017-11-11 07:16 ./ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/bin/ -rwxr-xr-x root/root 440448 2017-11-11 07:16 ./usr/bin/bamg -rwxr-xr-x root/root 6067 2017-11-11 07:16 ./usr/bin/bamg2geo -rwxr-xr-x root/root 149600 2017-11-11 07:16 ./usr/bin/branch -rwxr-xr-x root/root 419944 2017-11-11 07:16 ./usr/bin/csr -rwxr-xr-x root/root 223328 2017-11-11 07:16 ./usr/bin/field -rwxr-xr-x root/root 133216 2017-11-11 07:16 ./usr/bin/geo -rwxr-xr-x root/root 10779 2017-11-11 07:16 ./usr/bin/mkgeo_ball -rwxr-xr-x root/root 6032 2017-11-11 07:16 ./usr/bin/mkgeo_grid -rwxr-xr-x root/root 14989 2017-11-11 07:16 ./usr/bin/mkgeo_ugrid -rwxr-xr-x root/root 4073 2017-11-11 07:16 ./usr/bin/msh2geo drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/lib/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/lib/rheolef/ -rwxr-xr-x root/root 129120 2017-11-11 07:16 ./usr/lib/rheolef/mkgeo_ball_gmsh_fix -rwxr-xr-x root/root 14280 2017-11-11 07:16 ./usr/lib/rheolef/mkgeo_grid_1d -rwxr-xr-x root/root 18472 2017-11-11 07:16 ./usr/lib/rheolef/mkgeo_grid_2d -rwxr-xr-x root/root 22512 2017-11-11 07:16 ./usr/lib/rheolef/mkgeo_grid_3d -rwxr-xr-x root/root 136472 2017-11-11 07:16 ./usr/lib/rheolef/msh2geo_int drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/doc/rheolef/ lrwxrwxrwx root/root 0 2017-11-11 07:16 ./usr/share/doc/rheolef/changelog.Debian.gz -> ../librheolef1/changelog.Debian.gz -rw-r--r-- root/root 2804 2017-08-07 16:18 ./usr/share/doc/rheolef/copyright drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/man/ drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/man/man1/ -rw-r--r-- root/root 5303 2017-11-11 07:16 ./usr/share/man/man1/bamg.1rheolef.gz -rw-r--r-- root/root 989 2017-11-11 07:16 ./usr/share/man/man1/bamg2geo.1rheolef.gz -rw-r--r-- root/root 2023 2017-11-11 07:16 ./usr/share/man/man1/branch.1rheolef.gz -rw-r--r-- root/root 579 2017-11-11 07:16 ./usr/share/man/man1/csr.1rheolef.gz -rw-r--r-- root/root 3481 2017-11-11 07:16 ./usr/share/man/man1/field.1rheolef.gz -rw-r--r-- root/root 2613 2017-11-11 07:16 ./usr/share/man/man1/geo.1rheolef.gz -rw-r--r-- root/root 1304 2017-11-11 07:16 ./usr/share/man/man1/mkgeo_ball.1rheolef.gz -rw-r--r-- root/root 1520 2017-11-11 07:16 ./usr/share/man/man1/mkgeo_grid.1rheolef.gz -rw-r--r-- root/root 1662 2017-11-11 07:16 ./usr/share/man/man1/mkgeo_ugrid.1rheolef.gz -rw-r--r-- root/root 1270 2017-11-11 07:16 ./usr/share/man/man1/msh2geo.1rheolef.gz drwxr-xr-x root/root 0 2017-11-11 07:16 ./usr/share/rheolef/ -rwxr-xr-x root/root 10440 2017-11-11 07:16 ./usr/share/rheolef/check-shlibpath_var.sh -rw-r--r-- root/root 31182 2017-11-11 07:16 ./usr/share/rheolef/mayavi2_rheolef.py -rw-r--r-- root/root 52769 2017-11-11 07:16 ./usr/share/rheolef/paraview_rheolef.py +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 1280760 Build-Time: 725 Distribution: bionic-proposed Host Architecture: s390x Install-Time: 484 Job: rheolef_6.7-4.dsc Machine Architecture: s390x Package: rheolef Package-Time: 1210 Source-Version: 6.7-4 Space: 1280760 Status: successful Version: 6.7-4 -------------------------------------------------------------------------------- Finished at 20171127-2327 Build needed 00:20:10, 1280760k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13783978 Scanning for processes to kill in build PACKAGEBUILD-13783978 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13783978 Stopping target for build PACKAGEBUILD-13783978 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13783978 Removing build PACKAGEBUILD-13783978