RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_114-0~53~0.IS.08.04 python-lpbuildd_114-0~53~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 29 Apr 18:02:09 ntpdate[8773]: adjust time server 10.211.37.1 offset -0.000081 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'd7fe12a24137cdb87e6e186568b872206946ee0c', '/home/buildd/filecache-default/940bf2d301aa29f2c9f80dd2cb7c976e6993bb5f'] Unpacking chroot for build d7fe12a24137cdb87e6e186568b872206946ee0c RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'd7fe12a24137cdb87e6e186568b872206946ee0c'] Mounting chroot for build d7fe12a24137cdb87e6e186568b872206946ee0c RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'd7fe12a24137cdb87e6e186568b872206946ee0c', 'deb http://ftpmaster.internal/ubuntu saucy main universe', 'deb http://ftpmaster.internal/ubuntu saucy-security main universe', 'deb http://ftpmaster.internal/ubuntu saucy-updates main universe', 'deb http://ftpmaster.internal/ubuntu saucy-proposed main universe'] Overriding sources.list in build-d7fe12a24137cdb87e6e186568b872206946ee0c RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'd7fe12a24137cdb87e6e186568b872206946ee0c', 'amd64'] Updating debian chroot for build d7fe12a24137cdb87e6e186568b872206946ee0c Get:1 http://ftpmaster.internal saucy Release.gpg [933 B] Ign http://archive-team.internal saucy Release.gpg Get:2 http://ftpmaster.internal saucy-security Release.gpg [933 B] Get:3 http://archive-team.internal saucy Release [728 B] Get:4 http://ftpmaster.internal saucy-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal saucy-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal saucy Release [40.8 kB] Get:7 http://ftpmaster.internal saucy-security Release [40.8 kB] Get:8 http://archive-team.internal saucy/main amd64 Packages Get:9 http://ftpmaster.internal saucy-updates Release [40.8 kB] Ign http://archive-team.internal saucy/main Translation-en Get:10 http://ftpmaster.internal saucy-proposed Release [40.8 kB] Get:11 http://ftpmaster.internal saucy/main amd64 Packages [1189 kB] Get:12 http://ftpmaster.internal saucy/universe amd64 Packages [5483 kB] Get:13 http://ftpmaster.internal saucy/main Translation-en [684 kB] Get:14 http://ftpmaster.internal saucy/universe Translation-en [3795 kB] Get:15 http://ftpmaster.internal saucy-security/main amd64 Packages [14 B] Get:16 http://ftpmaster.internal saucy-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal saucy-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal saucy-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal saucy-updates/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal saucy-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal saucy-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal saucy-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal saucy-proposed/main amd64 Packages [10.1 kB] Get:24 http://ftpmaster.internal saucy-proposed/universe amd64 Packages [37.5 kB] Get:25 http://ftpmaster.internal saucy-proposed/main Translation-en [6565 B] Get:26 http://ftpmaster.internal saucy-proposed/universe Translation-en [28.2 kB] Fetched 11.4 MB in 3s (2912 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: advancecomp libdbus-1-3 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libudev1 linux-libc-dev 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1995 kB of archives. After this operation, 43.0 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libdbus-1-3 libudev1 libkeyutils1 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 advancecomp linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libdbus-1-3 amd64 1.6.8-1ubuntu7 [151 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libudev1 amd64 198-0ubuntu12 [35.4 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libkeyutils1 amd64 1.5.5-7 [7328 B] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libk5crypto3 amd64 1.10.1+dfsg-5 [82.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5 [118 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main libkrb5-3 amd64 1.10.1+dfsg-5 [361 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libkrb5support0 amd64 1.10.1+dfsg-5 [23.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main advancecomp amd64 1.16-1 [297 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy-proposed/main linux-libc-dev amd64 3.9.0-0.2 [918 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1995 kB in 0s (16.5 MB/s) (Reading database ... 12056 files and directories currently installed.) Preparing to replace libdbus-1-3:amd64 1.6.8-1ubuntu6 (using .../libdbus-1-3_1.6.8-1ubuntu7_amd64.deb) ... Unpacking replacement libdbus-1-3:amd64 ... Preparing to replace libudev1:amd64 198-0ubuntu11 (using .../libudev1_198-0ubuntu12_amd64.deb) ... Unpacking replacement libudev1:amd64 ... Preparing to replace libkeyutils1:amd64 1.5.5-4 (using .../libkeyutils1_1.5.5-7_amd64.deb) ... Unpacking replacement libkeyutils1:amd64 ... Preparing to replace libk5crypto3:amd64 1.10.1+dfsg-4+nmu1 (using .../libk5crypto3_1.10.1+dfsg-5_amd64.deb) ... Unpacking replacement libk5crypto3:amd64 ... Preparing to replace libgssapi-krb5-2:amd64 1.10.1+dfsg-4+nmu1 (using .../libgssapi-krb5-2_1.10.1+dfsg-5_amd64.deb) ... Unpacking replacement libgssapi-krb5-2:amd64 ... Preparing to replace libkrb5-3:amd64 1.10.1+dfsg-4+nmu1 (using .../libkrb5-3_1.10.1+dfsg-5_amd64.deb) ... Unpacking replacement libkrb5-3:amd64 ... Preparing to replace libkrb5support0:amd64 1.10.1+dfsg-4+nmu1 (using .../libkrb5support0_1.10.1+dfsg-5_amd64.deb) ... Unpacking replacement libkrb5support0:amd64 ... Preparing to replace advancecomp 1.15-1build1 (using .../advancecomp_1.16-1_amd64.deb) ... Unpacking replacement advancecomp ... Preparing to replace linux-libc-dev:amd64 3.8.0-19.29 (using .../linux-libc-dev_3.9.0-0.2_amd64.deb) ... Unpacking replacement linux-libc-dev:amd64 ... Setting up libdbus-1-3:amd64 (1.6.8-1ubuntu7) ... Setting up libudev1:amd64 (198-0ubuntu12) ... Setting up libkeyutils1:amd64 (1.5.5-7) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5) ... Setting up advancecomp (1.16-1) ... Setting up linux-libc-dev:amd64 (3.9.0-0.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'd7fe12a24137cdb87e6e186568b872206946ee0c', 'amd64', 'saucy-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'rmatrix_1.0-12-1.dsc'] Initiating build d7fe12a24137cdb87e6e186568b872206946ee0c with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Automatic build of rmatrix_1.0-12-1 on allspice by sbuild/amd64 1.170.5 Build started at 20130429-1802 ****************************************************************************** rmatrix_1.0-12-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.0), cdbs, r-base-dev (>= 3.0.0~20130324), r-cran-lattice (>= 0.12-11.1) Checking for already installed source dependencies... debhelper: missing cdbs: missing r-base-dev: missing r-cran-lattice: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs r-base-dev r-cran-lattice Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates dh-apparmor dh-translations file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.8 groff-base html2text intltool intltool-debian libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran-4.8-dev libgfortran3 libharfbuzz0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu48 libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libssl1.0.0 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase openssl po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core tcl8.5 tcl8.5-lib tk8.5 tk8.5-lib ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg groff libdata-dump-perl libcrypt-ssleay-perl ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin Recommended packages: curl wget lynx-cur libhtml-format-perl libio-socket-inet6-perl libio-socket-ip-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates cdbs debhelper dh-apparmor dh-translations file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.8 groff-base html2text intltool intltool-debian libasprintf-dev libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0 libgfortran-4.8-dev libgfortran3 libharfbuzz0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu48 libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libssl1.0.0 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase openssl po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core r-base-dev r-cran-lattice tcl8.5 tcl8.5-lib tk8.5 tk8.5-lib ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 69.4 MB of archives. After this operation, 180 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libmagic1 libssl1.0.0 libasprintf0c2 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 groff-base bsdmainutils man-db ucf ttf-dejavu-core fontconfig-config libfreetype6 libfontconfig1 libpixman-1-0 libxcb-render0 libxcb-shm0 libxrender1 libcairo2 libcroco3 libdatrie1 libunistring0 libgettextpo0 libgfortran3 libicu48 libharfbuzz0 x11-common libice6 libjpeg-turbo8 libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libpaper1 libpcrecpp0 libsm6 libjbig0 libjpeg8 libtiff5 libxss1 libxt6 tcl8.5-lib tk8.5-lib file mime-support netbase openssl ca-certificates gettext-base libsigsegv2 m4 autoconf autotools-dev automake html2text libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf dh-apparmor debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libnet-http-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations libpython2.7-minimal python2.7-minimal libpython2.7-stdlib python2.7 python-minimal libpython-stdlib python python-scour cdbs libgfortran-4.8-dev gfortran-4.8 gfortran libblas3 libblas-dev libbz2-dev libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev liblapack3 liblapack-dev libtinfo-dev libncurses5-dev libpaper-utils libpcre3-dev zlib1g-dev libpng12-dev libreadline6-dev libreadline-dev zip unzip xdg-utils tcl8.5 tk8.5 r-base-core r-base-dev r-cran-lattice Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 amd64 2.1.0-2 [129 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 amd64 5.11-2ubuntu4 [170 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libssl1.0.0 amd64 1.0.1c-4ubuntu8 [1054 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 amd64 0.18.1.1-10ubuntu3 [6864 B] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 amd64 1.2.3-1 [26.9 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main libxau6 amd64 1:1.0.7-1 [8592 B] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libxdmcp6 amd64 1:1.1.1-1 [12.8 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libxcb1 amd64 1.8.1-2ubuntu2 [44.8 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libx11-data all 2:1.5.0-1ubuntu1 [177 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libx11-6 amd64 2:1.5.0-1ubuntu1 [770 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libxext6 amd64 2:1.3.1-2 [33.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 amd64 2.9.0+dfsg1-4ubuntu4 [691 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main groff-base amd64 1.22.2-2 [719 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils amd64 9.0.4ubuntu3 [203 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main man-db amd64 2.6.3-3 [637 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main ucf all 3.0025+nmu3 [55.0 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main ttf-dejavu-core all 2.33-3ubuntu2 [1019 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main fontconfig-config all 2.10.2-0ubuntu2 [46.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libfreetype6 amd64 2.4.11-0ubuntu1 [346 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libfontconfig1 amd64 2.10.2-0ubuntu2 [136 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main libpixman-1-0 amd64 0.28.2-0ubuntu1 [249 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main libxcb-render0 amd64 1.8.1-2ubuntu2 [13.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main libxcb-shm0 amd64 1.8.1-2ubuntu2 [5552 B] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main libxrender1 amd64 1:0.9.7-1 [20.5 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main libcairo2 amd64 1.12.14-0ubuntu1 [614 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 amd64 0.6.8-1 [82.1 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main libdatrie1 amd64 0.2.6-1 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 amd64 0.9.3-5build1 [430 kB] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 amd64 0.18.1.1-10ubuntu3 [123 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main libgfortran3 amd64 4.8.0-4ubuntu2 [346 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main libicu48 amd64 4.8.1.1-12 [4737 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main libharfbuzz0 amd64 0.9.13-1 [267 kB] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main x11-common all 1:7.7+1ubuntu4 [58.1 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/main libice6 amd64 2:1.0.8-2 [47.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/main libjpeg-turbo8 amd64 1.2.1-0ubuntu2 [114 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main libthai-data all 0.1.19-1 [130 kB] Get:37 http://ftpmaster.internal/ubuntu/ saucy/main libthai0 amd64 0.1.19-1 [17.0 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/main libxft2 amd64 2.3.1-1 [43.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ saucy/main fontconfig amd64 2.10.2-0ubuntu2 [170 kB] Get:40 http://ftpmaster.internal/ubuntu/ saucy/main libpango1.0-0 amd64 1.32.5-0ubuntu1 [234 kB] Get:41 http://ftpmaster.internal/ubuntu/ saucy/main libpaper1 amd64 1.1.24+nmu2ubuntu2 [14.6 kB] Get:42 http://ftpmaster.internal/ubuntu/ saucy/main libpcrecpp0 amd64 1:8.31-2 [16.5 kB] Get:43 http://ftpmaster.internal/ubuntu/ saucy/main libsm6 amd64 2:1.2.1-2 [18.1 kB] Get:44 http://ftpmaster.internal/ubuntu/ saucy/main libjbig0 amd64 2.0-2ubuntu1 [28.6 kB] Get:45 http://ftpmaster.internal/ubuntu/ saucy/main libjpeg8 amd64 8c-2ubuntu7 [2112 B] Get:46 http://ftpmaster.internal/ubuntu/ saucy/main libtiff5 amd64 4.0.2-4ubuntu2 [167 kB] Get:47 http://ftpmaster.internal/ubuntu/ saucy/main libxss1 amd64 1:1.2.2-1 [8582 B] Get:48 http://ftpmaster.internal/ubuntu/ saucy/main libxt6 amd64 1:1.1.3-1 [187 kB] Get:49 http://ftpmaster.internal/ubuntu/ saucy/main tcl8.5-lib amd64 8.5.13-1ubuntu4 [538 kB] Get:50 http://ftpmaster.internal/ubuntu/ saucy/main tk8.5-lib amd64 8.5.11-2ubuntu4 [567 kB] Get:51 http://ftpmaster.internal/ubuntu/ saucy/main file amd64 5.11-2ubuntu4 [18.4 kB] Get:52 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.52-2ubuntu1 [30.5 kB] Get:53 http://ftpmaster.internal/ubuntu/ saucy/main netbase all 5.0ubuntu1 [13.8 kB] Get:54 http://ftpmaster.internal/ubuntu/ saucy/main openssl amd64 1.0.1c-4ubuntu8 [525 kB] Get:55 http://ftpmaster.internal/ubuntu/ saucy/main ca-certificates all 20130119 [184 kB] Get:56 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base amd64 0.18.1.1-10ubuntu3 [77.8 kB] Get:57 http://ftpmaster.internal/ubuntu/ saucy/main libsigsegv2 amd64 2.9-4ubuntu3 [14.7 kB] Get:58 http://ftpmaster.internal/ubuntu/ saucy/main m4 amd64 1.4.16-5 [203 kB] Get:59 http://ftpmaster.internal/ubuntu/ saucy/main autoconf all 2.69-1ubuntu1 [568 kB] Get:60 http://ftpmaster.internal/ubuntu/ saucy/main autotools-dev all 20120608.1 [42.9 kB] Get:61 http://ftpmaster.internal/ubuntu/ saucy/main automake all 1:1.11.6-1ubuntu1 [578 kB] Get:62 http://ftpmaster.internal/ubuntu/ saucy/main html2text amd64 1.3.2a-15ubuntu3 [92.9 kB] Get:63 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev amd64 0.18.1.1-10ubuntu3 [4544 B] Get:64 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev amd64 0.18.1.1-10ubuntu3 [164 kB] Get:65 http://ftpmaster.internal/ubuntu/ saucy/main gettext amd64 0.18.1.1-10ubuntu3 [1039 kB] Get:66 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:67 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:68 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu11 [8392 B] Get:69 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20120909ubuntu1 [631 kB] Get:70 http://ftpmaster.internal/ubuntu/ saucy/main liburi-perl all 1.60-1 [89.6 kB] Get:71 http://ftpmaster.internal/ubuntu/ saucy/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:72 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:73 http://ftpmaster.internal/ubuntu/ saucy/main libfile-listing-perl all 6.04-1 [9774 B] Get:74 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:75 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-parser-perl amd64 3.69-2 [99.5 kB] Get:76 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-tree-perl all 5.02-1 [213 kB] Get:77 http://ftpmaster.internal/ubuntu/ saucy/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:78 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-message-perl all 6.03-1 [77.6 kB] Get:79 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:80 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:81 http://ftpmaster.internal/ubuntu/ saucy/main libnet-ssleay-perl amd64 1.48-1 [316 kB] Get:82 http://ftpmaster.internal/ubuntu/ saucy/main libio-socket-ssl-perl all 1.76-2ubuntu1 [51.4 kB] Get:83 http://ftpmaster.internal/ubuntu/ saucy/main libnet-http-perl all 6.03-2 [24.0 kB] Get:84 http://ftpmaster.internal/ubuntu/ saucy/main liblwp-protocol-https-perl all 6.03-1 [7178 B] Get:85 http://ftpmaster.internal/ubuntu/ saucy/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:86 http://ftpmaster.internal/ubuntu/ saucy/main libwww-perl all 6.04-1 [156 kB] Get:87 http://ftpmaster.internal/ubuntu/ saucy/main libxml-parser-perl amd64 2.41-1build2 [294 kB] Get:88 http://ftpmaster.internal/ubuntu/ saucy/main intltool all 0.50.2-2 [52.0 kB] Get:89 http://ftpmaster.internal/ubuntu/ saucy/main dh-translations all 117 [21.7 kB] Get:90 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-minimal amd64 2.7.4-2ubuntu3 [502 kB] Get:91 http://ftpmaster.internal/ubuntu/ saucy/main python2.7-minimal amd64 2.7.4-2ubuntu3 [1223 kB] Get:92 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-stdlib amd64 2.7.4-2ubuntu3 [2381 kB] Get:93 http://ftpmaster.internal/ubuntu/ saucy/main python2.7 amd64 2.7.4-2ubuntu3 [263 kB] Get:94 http://ftpmaster.internal/ubuntu/ saucy/main python-minimal amd64 2.7.4-0ubuntu1 [30.8 kB] Get:95 http://ftpmaster.internal/ubuntu/ saucy/main libpython-stdlib amd64 2.7.4-0ubuntu1 [7542 B] Get:96 http://ftpmaster.internal/ubuntu/ saucy/main python amd64 2.7.4-0ubuntu1 [169 kB] Get:97 http://ftpmaster.internal/ubuntu/ saucy/main python-scour all 0.26-3 [46.5 kB] Get:98 http://ftpmaster.internal/ubuntu/ saucy/main cdbs all 0.4.120ubuntu1 [48.0 kB] Get:99 http://ftpmaster.internal/ubuntu/ saucy/main libgfortran-4.8-dev amd64 4.8.0-4ubuntu2 [437 kB] Get:100 http://ftpmaster.internal/ubuntu/ saucy/main gfortran-4.8 amd64 4.8.0-4ubuntu2 [6167 kB] Get:101 http://ftpmaster.internal/ubuntu/ saucy/main gfortran amd64 4:4.8.0-0ubuntu13 [1210 B] Get:102 http://ftpmaster.internal/ubuntu/ saucy/main libblas3 amd64 1.2.20110419-5 [287 kB] Get:103 http://ftpmaster.internal/ubuntu/ saucy/main libblas-dev amd64 1.2.20110419-5 [301 kB] Get:104 http://ftpmaster.internal/ubuntu/ saucy/main libbz2-dev amd64 1.0.6-4 [32.8 kB] Get:105 http://ftpmaster.internal/ubuntu/ saucy/main libjpeg-turbo8-dev amd64 1.2.1-0ubuntu2 [396 kB] Get:106 http://ftpmaster.internal/ubuntu/ saucy/main libjpeg8-dev amd64 8c-2ubuntu7 [1544 B] Get:107 http://ftpmaster.internal/ubuntu/ saucy/main libjpeg-dev all 8c-2ubuntu7 [1536 B] Get:108 http://ftpmaster.internal/ubuntu/ saucy/main liblapack3 amd64 3.4.2-1~exp3 [5066 kB] Get:109 http://ftpmaster.internal/ubuntu/ saucy/main liblapack-dev amd64 3.4.2-1~exp3 [5597 kB] Get:110 http://ftpmaster.internal/ubuntu/ saucy/main libtinfo-dev amd64 5.9-10ubuntu4 [105 kB] Get:111 http://ftpmaster.internal/ubuntu/ saucy/main libncurses5-dev amd64 5.9-10ubuntu4 [224 kB] Get:112 http://ftpmaster.internal/ubuntu/ saucy/main libpaper-utils amd64 1.1.24+nmu2ubuntu2 [9164 B] Get:113 http://ftpmaster.internal/ubuntu/ saucy/main libpcre3-dev amd64 1:8.31-2 [266 kB] Get:114 http://ftpmaster.internal/ubuntu/ saucy/main zlib1g-dev amd64 1:1.2.7.dfsg-13ubuntu2 [179 kB] Get:115 http://ftpmaster.internal/ubuntu/ saucy/main libpng12-dev amd64 1.2.49-1ubuntu2 [207 kB] Get:116 http://ftpmaster.internal/ubuntu/ saucy/main libreadline6-dev amd64 6.2-9ubuntu1 [265 kB] Get:117 http://ftpmaster.internal/ubuntu/ saucy/main libreadline-dev amd64 6.2-9ubuntu1 [932 B] Get:118 http://ftpmaster.internal/ubuntu/ saucy/main zip amd64 3.0-7 [262 kB] Get:119 http://ftpmaster.internal/ubuntu/ saucy/main unzip amd64 6.0-8ubuntu1 [192 kB] Get:120 http://ftpmaster.internal/ubuntu/ saucy/main xdg-utils all 1.1.0~rc1-2ubuntu7 [65.6 kB] Get:121 http://ftpmaster.internal/ubuntu/ saucy/main tcl8.5 amd64 8.5.13-1ubuntu4 [565 kB] Get:122 http://ftpmaster.internal/ubuntu/ saucy/main tk8.5 amd64 8.5.11-2ubuntu4 [444 kB] Get:123 http://ftpmaster.internal/ubuntu/ saucy-proposed/universe r-base-core amd64 3.0.0-2ubuntu1 [21.5 MB] Get:124 http://ftpmaster.internal/ubuntu/ saucy-proposed/universe r-base-dev all 3.0.0-2ubuntu1 [3948 B] Get:125 http://ftpmaster.internal/ubuntu/ saucy-proposed/universe r-cran-lattice amd64 0.20-15-1 [709 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 69.4 MB in 2s (24.9 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 12056 files and directories currently installed.) Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-2_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-2ubuntu4_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1c-4ubuntu8_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10ubuntu3_amd64.deb) ... Selecting previously unselected package libpipeline1:amd64. Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.3-1_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... 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Unpacking libthai-data (from .../libthai-data_0.1.19-1_all.deb) ... Selecting previously unselected package libthai0:amd64. Unpacking libthai0:amd64 (from .../libthai0_0.1.19-1_amd64.deb) ... Selecting previously unselected package libxft2:amd64. Unpacking libxft2:amd64 (from .../libxft2_2.3.1-1_amd64.deb) ... Selecting previously unselected package fontconfig. Unpacking fontconfig (from .../fontconfig_2.10.2-0ubuntu2_amd64.deb) ... Selecting previously unselected package libpango1.0-0:amd64. Unpacking libpango1.0-0:amd64 (from .../libpango1.0-0_1.32.5-0ubuntu1_amd64.deb) ... Selecting previously unselected package libpaper1:amd64. Unpacking libpaper1:amd64 (from .../libpaper1_1.1.24+nmu2ubuntu2_amd64.deb) ... Selecting previously unselected package libpcrecpp0:amd64. Unpacking libpcrecpp0:amd64 (from .../libpcrecpp0_1%3a8.31-2_amd64.deb) ... Selecting previously unselected package libsm6:amd64. Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ... Selecting previously unselected package libjbig0:amd64. Unpacking libjbig0:amd64 (from .../libjbig0_2.0-2ubuntu1_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8c-2ubuntu7_amd64.deb) ... Selecting previously unselected package libtiff5:amd64. Unpacking libtiff5:amd64 (from .../libtiff5_4.0.2-4ubuntu2_amd64.deb) ... Selecting previously unselected package libxss1:amd64. Unpacking libxss1:amd64 (from .../libxss1_1%3a1.2.2-1_amd64.deb) ... Selecting previously unselected package libxt6:amd64. Unpacking libxt6:amd64 (from .../libxt6_1%3a1.1.3-1_amd64.deb) ... Selecting previously unselected package tcl8.5-lib:amd64. Unpacking tcl8.5-lib:amd64 (from .../tcl8.5-lib_8.5.13-1ubuntu4_amd64.deb) ... Selecting previously unselected package tk8.5-lib:amd64. Unpacking tk8.5-lib:amd64 (from .../tk8.5-lib_8.5.11-2ubuntu4_amd64.deb) ... Selecting previously unselected package file. 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Setting up bsdmainutils (9.0.4ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.3-3) ... Building database of manual pages ... Setting up ucf (3.0025+nmu3) ... Setting up ttf-dejavu-core (2.33-3ubuntu2) ... Setting up fontconfig-config (2.10.2-0ubuntu2) ... Setting up libfreetype6:amd64 (2.4.11-0ubuntu1) ... Setting up libfontconfig1:amd64 (2.10.2-0ubuntu2) ... Setting up libpixman-1-0:amd64 (0.28.2-0ubuntu1) ... Setting up libxcb-render0:amd64 (1.8.1-2ubuntu2) ... Setting up libxcb-shm0:amd64 (1.8.1-2ubuntu2) ... Setting up libxrender1:amd64 (1:0.9.7-1) ... Setting up libcairo2:amd64 (1.12.14-0ubuntu1) ... Setting up libcroco3:amd64 (0.6.8-1) ... Setting up libdatrie1:amd64 (0.2.6-1) ... Setting up libunistring0:amd64 (0.9.3-5build1) ... Setting up libgettextpo0:amd64 (0.18.1.1-10ubuntu3) ... 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Setting up libpython2.7-stdlib:amd64 (2.7.4-2ubuntu3) ... Setting up python2.7 (2.7.4-2ubuntu3) ... Setting up python-minimal (2.7.4-0ubuntu1) ... Setting up libpython-stdlib:amd64 (2.7.4-0ubuntu1) ... Setting up python (2.7.4-0ubuntu1) ... Setting up python-scour (0.26-3) ... Setting up libgfortran-4.8-dev:amd64 (4.8.0-4ubuntu2) ... Setting up gfortran-4.8 (4.8.0-4ubuntu2) ... Setting up gfortran (4:4.8.0-0ubuntu13) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:amd64 (1.0.6-4) ... Setting up libjpeg-turbo8-dev:amd64 (1.2.1-0ubuntu2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu7) ... Setting up libjpeg-dev (8c-2ubuntu7) ... Setting up liblapack3 (3.4.2-1~exp3) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.4.2-1~exp3) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:amd64 (5.9-10ubuntu4) ... Setting up libncurses5-dev (5.9-10ubuntu4) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu2) ... Setting up libpcre3-dev:amd64 (1:8.31-2) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13ubuntu2) ... Setting up libpng12-dev (1.2.49-1ubuntu2) ... Setting up libreadline6-dev:amd64 (6.2-9ubuntu1) ... Setting up libreadline-dev:amd64 (6.2-9ubuntu1) ... Setting up zip (3.0-7) ... Setting up unzip (6.0-8ubuntu1) ... Setting up xdg-utils (1.1.0~rc1-2ubuntu7) ... Setting up tcl8.5 (8.5.13-1ubuntu4) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode Setting up tk8.5 (8.5.11-2ubuntu4) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode Setting up r-base-core (3.0.0-2ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.20-15-1) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Setting up libwww-perl (6.04-1) ... Setting up libxml-parser-perl (2.41-1build2) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (117) ... Setting up cdbs (0.4.120ubuntu1) ... Setting up r-base-dev (3.0.0-2ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 158 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-0ubuntu5 make_3.81-8.2ubuntu2 dpkg-dev_1.16.10ubuntu1 gcc-4.8_4.8.0-4ubuntu2 g++-4.8_4.8.0-4ubuntu2 binutils_2.23.2-2ubuntu1 libstdc++-4.8-dev_4.8.0-4ubuntu2 libstdc++6_4.8.0-4ubuntu2 ------------------------------------------------------------------------------ gpgv: Signature made Tue Mar 26 19:36:10 2013 UTC using DSA key ID 91B0D3B7 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./rmatrix_1.0-12-1.dsc dpkg-source: info: extracting rmatrix in rmatrix-1.0-12 dpkg-source: info: unpacking rmatrix_1.0-12.orig.tar.gz dpkg-source: info: applying rmatrix_1.0-12-1.diff.gz dpkg-buildpackage: source package rmatrix dpkg-buildpackage: source version 1.0-12-1 dpkg-source --before-build rmatrix-1.0-12 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules dh_testroot /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/rmatrix-1.0-12' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12' if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "reverse-patches" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi for dir in debian/patches ; do \ rm -f $dir/*.log ; \ done dh_clean if test -d src; then \ find src -regex ".*\..*o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/rmatrix-1.0-12' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12' if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi make[1]: Entering directory `/build/buildd/rmatrix-1.0-12' /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12' /usr/bin/fakeroot debian/rules binary-arch /usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead test -x debian/rules dh_testroot dh_clean -k dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/library echo "R:Depends=r-base-core (>= 3.0.0-2ubuntu1)" >> debian/r-cran-matrix.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /build/buildd/rmatrix-1.0-12/debian/r-cran-matrix/usr/lib/R/library --clean \ . ; \ else \ R CMD INSTALL -l /build/buildd/rmatrix-1.0-12/debian/r-cran-matrix/usr/lib/R/library \ --clean . ;\ fi * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** libs make[1]: Entering directory `/build/buildd/rmatrix-1.0-12/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c CHMfactor.c -o CHMfactor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c Csparse.c -o Csparse.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c TMatrix_as.c -o TMatrix_as.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c Tsparse.c -o Tsparse.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c Mutils.c -o Mutils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c chm_common.c -o chm_common.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c cs.c -o cs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c cs_utils.c -o cs_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dense.c -o dense.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dgCMatrix.c -o dgCMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dgTMatrix.c -o dgTMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dgeMatrix.c -o dgeMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dpoMatrix.c -o dpoMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dppMatrix.c -o dppMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dsCMatrix.c -o dsCMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dsyMatrix.c -o dsyMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dspMatrix.c -o dspMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dtCMatrix.c -o dtCMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dtTMatrix.c -o dtTMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dtrMatrix.c -o dtrMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c dtpMatrix.c -o dtpMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c factorizations.c -o factorizations.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c ldense.c -o ldense.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c lgCMatrix.c -o lgCMatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c sparseQR.c -o sparseQR.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O3 -pipe -g -c abIndex.c -o abIndex.o make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD' ( cd Lib ; make clean ) make[3]: Entering directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD/Lib' make[3]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD/Lib' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD' make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/COLAMD' ( cd Source ; make clean ) make[3]: Entering directory `/build/buildd/rmatrix-1.0-12/src/COLAMD/Source' make[3]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/COLAMD/Source' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/COLAMD' make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/AMD' ( cd Source ; make clean ) make[3]: Entering directory `/build/buildd/rmatrix-1.0-12/src/AMD/Source' make[3]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/AMD/Source' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/AMD' make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/SuiteSparse_config' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/SuiteSparse_config' make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD' ( cd Lib ; make ) make[3]: Entering directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD/Lib' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_add.c -o cholmod_add.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_band.c -o cholmod_band.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_common.c -o cholmod_common.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_error.c -o cholmod_error.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Check/cholmod_check.c -o cholmod_check.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Check/cholmod_read.c -o cholmod_read.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Check/cholmod_write.c -o cholmod_write.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O3 -pipe -g -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[3]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD/Lib' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD' make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/COLAMD' ( cd Source ; make lib ) make[3]: Entering directory `/build/buildd/rmatrix-1.0-12/src/COLAMD/Source' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -c colamd_global.c -o colamd_global.o colamd_global.c:21:16: warning: initialization from incompatible pointer type [enabled by default] #define printf Rprintf ^ colamd_global.c:22:44: note: in expansion of macro 'printf' int (*colamd_printf) (const char *, ...) = printf ; ^ gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -c colamd.c -o colamd.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[3]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/COLAMD/Source' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/COLAMD' make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/AMD' ( cd Source ; make lib ) make[3]: Entering directory `/build/buildd/rmatrix-1.0-12/src/AMD/Source' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDINT -c amd_global.c -o amd_i_global.o amd_global.c:80:16: warning: initialization from incompatible pointer type [enabled by default] #define printf Rprintf ^ amd_global.c:81:41: note: in expansion of macro 'printf' int (*amd_printf) (const char *, ...) = printf ; ^ gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O3 -pipe -g -I../Include -DDLONG -c amd_global.c -o amd_l_global.o amd_global.c:80:16: warning: initialization from incompatible pointer type [enabled by default] #define printf Rprintf ^ amd_global.c:81:41: note: in expansion of macro 'printf' int (*amd_printf) (const char *, ...) = printf ; ^ ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o make[3]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/AMD/Source' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/AMD' make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/SuiteSparse_config' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DNTIMER -fpic -O3 -pipe -g -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/SuiteSparse_config' gcc -std=gnu99 -shared -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12/src' make[1]: Entering directory `/build/buildd/rmatrix-1.0-12/src' make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12/src' installing to /build/buildd/rmatrix-1.0-12/debian/r-cran-matrix/usr/lib/R/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'image' from package 'graphics' in package 'Matrix' Creating a generic function for 'solve' from package 'base' in package 'Matrix' Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'determinant' from package 'base' in package 'Matrix' Creating a generic function for 'update' from package 'stats' in package 'Matrix' Creating a generic function for 't' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'as.matrix' from package 'base' in package 'Matrix' Creating a generic function for 'as.array' from package 'base' in package 'Matrix' Creating a generic function for 'head' from package 'utils' in package 'Matrix' Creating a generic function for 'tail' from package 'utils' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'as.vector' from package 'base' in package 'Matrix' Creating a generic function for 'mean' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'isSymmetric' from package 'base' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'chol' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' Creating a generic function for 'all.equal' from package 'base' in package 'Matrix' Creating a generic function for 'diff' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'qr' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'print' from package 'base' in package 'Matrix' Creating a generic function for 'summary' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'format' from package 'base' in package 'Matrix' Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' ** help *** installing help indices ** building package indices Loading required package: Matrix ** installing vignettes 'Comparisons.Rnw' 'Design-issues.Rnw' 'Intro2Matrix.Rnw' 'Introduction.Rnw' 'sparseModels.Rnw' Cleaning up after installing the Matrix package make[1]: Entering directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD' ( cd Lib ; make clean ) make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD/Lib' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD/Lib' make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/CHOLMOD' make[1]: Entering directory `/build/buildd/rmatrix-1.0-12/src/COLAMD' ( cd Source ; make clean ) make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/COLAMD/Source' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/COLAMD/Source' make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/COLAMD' make[1]: Entering directory `/build/buildd/rmatrix-1.0-12/src/AMD' ( cd Source ; make clean ) make[2]: Entering directory `/build/buildd/rmatrix-1.0-12/src/AMD/Source' make[2]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/AMD/Source' make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/AMD' make[1]: Entering directory `/build/buildd/rmatrix-1.0-12/src/SuiteSparse_config' make[1]: Leaving directory `/build/buildd/rmatrix-1.0-12/src/SuiteSparse_config' ** testing if installed package can be loaded * DONE (Matrix) rm -vf /build/buildd/rmatrix-1.0-12/debian/r-cran-matrix/usr/lib/R/library/R.css \ /build/buildd/rmatrix-1.0-12/debian/r-cran-matrix/usr/lib/R/library/Matrix/COPYING \ /build/buildd/rmatrix-1.0-12/debian/r-cran-matrix/usr/lib/R/library/Matrix/LICENSE.txt if test -f debian/overrides; then \ install -d /build/buildd/rmatrix-1.0-12/debian/r-cran-matrix/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /build/buildd/rmatrix-1.0-12/debian/r-cran-matrix/usr/share/lintian/overrides/r-cran-matrix; \ fi Adding cdbs dependencies to debian/r-cran-matrix.substvars dh_installdirs -pr-cran-matrix dh_installdocs -pr-cran-matrix ./TODO dh_installexamples -pr-cran-matrix dh_installman -pr-cran-matrix dh_installinfo -pr-cran-matrix dh_installmenu -pr-cran-matrix dh_installcron -pr-cran-matrix dh_installinit -pr-cran-matrix dh_installdebconf -pr-cran-matrix dh_installemacsen -pr-cran-matrix dh_installcatalogs -pr-cran-matrix dh_installpam -pr-cran-matrix dh_installlogrotate -pr-cran-matrix dh_installlogcheck -pr-cran-matrix dh_installchangelogs -pr-cran-matrix ./ChangeLog dh_installudev -pr-cran-matrix dh_lintian -pr-cran-matrix dh_bugfiles -pr-cran-matrix dh_install -pr-cran-matrix dh_link -pr-cran-matrix dh_installmime -pr-cran-matrix dh_installgsettings -pr-cran-matrix dh_strip -pr-cran-matrix dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: r-cran-matrix dh_strip debug symbol extraction: packages to act on: r-cran-matrix dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `r-cran-matrix-dbgsym' in `../r-cran-matrix-dbgsym_1.0-12-1_amd64.ddeb'. dh_compress -pr-cran-matrix dh_fixperms -pr-cran-matrix dh_makeshlibs -pr-cran-matrix dh_installdeb -pr-cran-matrix dh_perl -pr-cran-matrix dh_shlibdeps -pr-cran-matrix dh_gencontrol -pr-cran-matrix dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-cran-matrix ; fi dh_md5sums -pr-cran-matrix dh_builddeb -pr-cran-matrix INFO: pkgstriptranslations version 117 pkgstriptranslations: processing r-cran-matrix (in debian/r-cran-matrix); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-cran-matrix/DEBIAN/control, package r-cran-matrix, directory debian/r-cran-matrix .. removing usr/share/doc/r-cran-matrix/changelog.gz pkgstripfiles: Truncating usr/share/doc/r-cran-matrix/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package r-cran-matrix took 0 s dpkg-deb: warning: 'debian/r-cran-matrix/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-cran-matrix' in `../r-cran-matrix_1.0-12-1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../rmatrix_1.0-12-1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build rmatrix-1.0-12 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20130429-1805 Publishing debug debs. chroot-autobuild/build/buildd/r-cran-matrix_1.0-12-1_amd64.deb: new debian package, version 2.0. size 3077978 bytes: control archive= 2758 bytes. 757 bytes, 15 lines control 5711 bytes, 73 lines md5sums Package: r-cran-matrix Source: rmatrix Version: 1.0-12-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 4710 Depends: libblas3 | libblas.so.3 | libatlas3-base, libc6 (>= 2.14), liblapack3 | liblapack.so.3 | libatlas3-base, r-base-core (>= 3.0.0-2ubuntu1), r-cran-lattice (>= 0.12-11.1) Section: gnu-r Priority: optional Description: GNU R package of classes for dense and sparse matrices This CRAN package provides S4 classes and methods for numerical linear algebra using dense or sparse matrices. 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classes for dense and sparse matrices Changes: rmatrix (1.0-12-1) unstable; urgency=low . * New upstream release Checksums-Sha1: 13139b8f3fa0e486cc482a271650fdb492c6a2f3 3077978 r-cran-matrix_1.0-12-1_amd64.deb Checksums-Sha256: 39c39f62a4bea600081ae819492da96982807049ea91c5a3b0d47565f59da8d7 3077978 r-cran-matrix_1.0-12-1_amd64.deb Files: d2dc893159b5394eade2138cba0a7f51 3077978 gnu-r optional r-cran-matrix_1.0-12-1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20130429-1805 Build needed 00:02:31, 14032k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'd7fe12a24137cdb87e6e186568b872206946ee0c'] Scanning for processes to kill in build /home/buildd/build-d7fe12a24137cdb87e6e186568b872206946ee0c/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'd7fe12a24137cdb87e6e186568b872206946ee0c'] Unmounting chroot for build d7fe12a24137cdb87e6e186568b872206946ee0c... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'd7fe12a24137cdb87e6e186568b872206946ee0c'] Removing build d7fe12a24137cdb87e6e186568b872206946ee0c