RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-022 4.2.0-22-generic #27-Ubuntu SMP Thu Dec 17 22:54:17 UTC 2015 ppc64le Buildd toolchain package versions: launchpad-buildd_136 python-lpbuildd_136 sbuild_0.65.2-1ubuntu2 bzr-builder_0.7.3-0ubuntu1 bzr_2.6.0+bzr6602-2ubuntu4 dpkg-dev_1.18.2ubuntu5.1 python-debian_0.1.27ubuntu1. Syncing the system clock with the buildd NTP service... 31 Dec 17:07:53 ntpdate[1555]: adjust time server 10.211.37.1 offset 0.001257 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8788403', '/home/buildd/filecache-default/64ba6963cee521707036a0c48846d736532c58ef'] Unpacking chroot for build PACKAGEBUILD-8788403 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8788403'] Mounting chroot for build PACKAGEBUILD-8788403 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8788403', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8788403 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8788403', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-8788403 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [73.5 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [73.5 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [227 kB] Get:5 http://ftpmaster.internal xenial/main ppc64el Packages [1414 kB] Get:6 http://ftpmaster.internal xenial/universe ppc64el Packages [6881 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [848 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4760 kB] Get:9 http://ftpmaster.internal xenial-security/main ppc64el Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe ppc64el Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main ppc64el Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe ppc64el Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main ppc64el Packages [107 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe ppc64el Packages [364 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [64.1 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [237 kB] Fetched 15.3 MB in 8s (1703 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: perl-modules* The following NEW packages will be installed: libapt-pkg5.0 libisl15 libperl5.22 libprocps4 perl-modules-5.22 The following packages will be upgraded: advancecomp apt apt-transport-https base-files binutils bsdutils cpp cpp-5 debconf diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libffi6 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmount1 libmpfr4 libncurses5 libncursesw5 libp11-kit0 libpng12-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount multiarch-support ncurses-base ncurses-bin openssl perl perl-base pkg-create-dbgsym pkgbinarymangler procps systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 105 upgraded, 5 newly installed, 1 to remove and 0 not upgraded. Need to get 128 MB of archives. After this operation, 331 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files ppc64el 9.4ubuntu3 [67.8 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils ppc64el 1:2.27.1-1ubuntu3 [50.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils ppc64el 1:3.3-3 [158 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg ppc64el 1.18.3ubuntu1 [2094 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev ppc64el 2.21-0ubuntu5 [1994 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin ppc64el 2.21-0ubuntu5 [64.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial-proposed/main linux-libc-dev ppc64el 4.3.0-5.16 [809 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 ppc64el 1:2.24-12 [13.3 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin ppc64el 2.21-0ubuntu5 [1168 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 ppc64el 5.3.1-4ubuntu1 [50.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 ppc64el 5.3.1-4ubuntu1 [27.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 ppc64el 5.3.1-4ubuntu1 [7934 B] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 ppc64el 5.3.1-4ubuntu1 [237 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base ppc64el 5.3.1-4ubuntu1 [16.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 ppc64el 1:5.3.1-4ubuntu1 [27.5 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 ppc64el 5.3.1-4ubuntu1 [95.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 ppc64el 0.15-3 [497 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 ppc64el 5.3.1-4ubuntu1 [28.0 MB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 ppc64el 5.3.1-4ubuntu1 [43.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main binutils ppc64el 2.25.90.20151211-0ubuntu2 [2191 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 ppc64el 5.3.1-4ubuntu1 [30.1 MB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 ppc64el 5.3.1-4ubuntu1 [28.2 MB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev ppc64el 5.3.1-4ubuntu1 [578 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev ppc64el 5.3.1-4ubuntu1 [1414 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 ppc64el 5.3.1-4ubuntu1 [409 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 ppc64el 2:6.1.0+dfsg-2 [226 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libmpfr4 ppc64el 3.1.3-2 [184 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libc6 ppc64el 2.21-0ubuntu5 [5184 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs ppc64el 1.42.13-1ubuntu1 [192 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs ppc64el 1.42.13-1ubuntu1 [763 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main findutils ppc64el 4.4.2-10 [284 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep ppc64el 2.22-1 [143 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main hostname ppc64el 3.16ubuntu2 [11.4 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main init ppc64el 1.24ubuntu2 [3970 B] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 ppc64el 2.27.1-1ubuntu3 [58.0 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 ppc64el 2.27.1-1ubuntu3 [15.0 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 ppc64el 2.27.1-1ubuntu3 [99.2 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 ppc64el 2.27.1-1ubuntu3 [129 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils ppc64el 2.88dsf-59.2ubuntu3 [25.7 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main initscripts ppc64el 2.88dsf-59.2ubuntu3 [24.8 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main util-linux ppc64el 2.27.1-1ubuntu3 [803 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 ppc64el 228-2ubuntu2 [55.0 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main udev ppc64el 228-2ubuntu2 [973 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 ppc64el 228-2ubuntu2 [197 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main systemd ppc64el 228-2ubuntu2 [3543 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 ppc64el 2.4-3 [54.7 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 ppc64el 6.0+20151024-2ubuntu1 [79.4 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 ppc64el 6.0+20151024-2ubuntu1 [97.2 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 ppc64el 6.0+20151024-2ubuntu1 [111 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 ppc64el 2:3.3.10-4ubuntu1 [32.2 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main procps ppc64el 2:3.3.10-4ubuntu1 [222 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libapparmor1 ppc64el 2.10-0ubuntu9 [29.1 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 ppc64el 1:2.4.4-4ubuntu1 [38.9 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 ppc64el 2.27.1-1ubuntu3 [104 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libseccomp2 ppc64el 2.2.3-2ubuntu3 [42.1 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin ppc64el 1:2.24-12 [20.1 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20150917ubuntu1 [13.4 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main mount ppc64el 2.27.1-1ubuntu3 [115 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin ppc64el 6.0+20151024-2ubuntu1 [136 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl-modules-5.22 all 5.22.1-3 [2648 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libperl5.22 ppc64el 5.22.1-3 [3193 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl ppc64el 5.22.1-3 [237 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl-base ppc64el 5.22.1-3 [1180 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main tar ppc64el 1.28-2.1 [222 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libapt-pkg5.0 ppc64el 1.1.10 [723 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main apt ppc64el 1.1.10 [1000 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main gpgv ppc64el 1.4.19-6ubuntu1 [176 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main gnupg ppc64el 1.4.19-6ubuntu1 [658 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv ppc64el 228-2ubuntu2 [15.1 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libffi6 ppc64el 3.2.1-4 [19.8 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main libp11-kit0 ppc64el 0.23.2-3 [105 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 ppc64el 4.7-3 [42.9 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 ppc64el 3.3.18-1ubuntu1 [444 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libldap-2.4-2 ppc64el 2.4.41+dfsg-1ubuntu3 [151 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 ppc64el 1.42.13-1ubuntu1 [65.6 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 ppc64el 0.198ubuntu1 [6282 B] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libdevmapper1.02.1 ppc64el 2:1.02.110-1ubuntu2 [134 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 ppc64el 1.21-1 [37.0 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 ppc64el 1.6.4-4 [355 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 ppc64el 2.4-2 [172 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:86 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 ppc64el 2.4-3 [73.0 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libss2 ppc64el 1.42.13-1ubuntu1 [69.6 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support ppc64el 2.21-0ubuntu5 [7186 B] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 ppc64el 1.2.54-1 [120 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 ppc64el 3.9.2-1 [359 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 ppc64el 1.0.2e-1ubuntu1 [830 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main dmsetup ppc64el 2:1.02.110-1ubuntu2 [56.8 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 ppc64el 1.13.2+dfsg-4 [109 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 ppc64el 1.13.2+dfsg-4 [269 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 ppc64el 1.13.2+dfsg-4 [29.7 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 ppc64el 1.13.2+dfsg-4 [98.3 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main libkeyutils1 ppc64el 1.5.9-8ubuntu1 [9812 B] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 ppc64el 1.32-3ubuntu1 [45.6 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls ppc64el 7.45.0-1ubuntu1 [175 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main apt-transport-https ppc64el 1.1.10 [30.0 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 ppc64el 1.10.6-1ubuntu1 [156 kB] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main openssl ppc64el 1.0.2e-1ubuntu1 [480 kB] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp ppc64el 1.20-1 [201 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main cpp ppc64el 4:5.2.1-16ubuntu2 [27.6 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main gcc ppc64el 4:5.2.1-16ubuntu2 [5224 B] Get:108 http://ftpmaster.internal/ubuntu/ xenial/main g++ ppc64el 4:5.2.1-16ubuntu2 [1502 B] Get:109 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 125 [41.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 128 MB in 7s (16.3 MB/s) (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11561 files and directories currently installed.) Preparing to unpack .../systemd_228-2ubuntu2_ppc64el.deb ... Unpacking systemd (228-2ubuntu2) over (225-1ubuntu9) ... Setting up systemd (228-2ubuntu2) ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libselinux1_2.4-3_ppc64el.deb ... Unpacking libselinux1:ppc64el (2.4-3) over (2.3-2build1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libselinux1:ppc64el (2.4-3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20151024-2ubuntu1_ppc64el.deb ... Unpacking libtinfo5:ppc64el (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libtinfo5:ppc64el (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20151024-2ubuntu1_ppc64el.deb ... Unpacking libncurses5:ppc64el (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncurses5:ppc64el (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11562 files and directories currently installed.) Preparing to unpack .../libprocps4_2%3a3.3.10-4ubuntu1_ppc64el.deb ... Unpacking libprocps4:ppc64el (2:3.3.10-4ubuntu1) ... Preparing to unpack .../procps_2%3a3.3.10-4ubuntu1_ppc64el.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.10-4ubuntu1) over (1:3.3.9-1ubuntu8) ... 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Unpacking libdpkg-perl (1.18.3ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../gcc_4%3a5.2.1-16ubuntu2_ppc64el.deb ... Removing old gcc doc directory. Unpacking gcc (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../g++_4%3a5.2.1-16ubuntu2_ppc64el.deb ... Unpacking g++ (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../pkg-create-dbgsym_0.70_all.deb ... Unpacking pkg-create-dbgsym (0.70) over (0.69) ... Preparing to unpack .../pkgbinarymangler_125_all.deb ... Unpacking pkgbinarymangler (125) over (122) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libc-dev-bin (2.21-0ubuntu5) ... Setting up linux-libc-dev:ppc64el (4.3.0-5.16) ... Setting up libc6-dev:ppc64el (2.21-0ubuntu5) ... Setting up libgomp1:ppc64el (5.3.1-4ubuntu1) ... Setting up libitm1:ppc64el (5.3.1-4ubuntu1) ... Setting up libatomic1:ppc64el (5.3.1-4ubuntu1) ... Setting up libasan2:ppc64el (5.3.1-4ubuntu1) ... Setting up libubsan0:ppc64el (5.3.1-4ubuntu1) ... Setting up libgmp10:ppc64el (2:6.1.0+dfsg-2) ... Setting up libisl15:ppc64el (0.15-3) ... Setting up libmpfr4:ppc64el (3.1.3-2) ... Setting up cpp-5 (5.3.1-4ubuntu1) ... Setting up libcc1-0:ppc64el (5.3.1-4ubuntu1) ... Setting up binutils (2.25.90.20151211-0ubuntu2) ... Setting up libgcc-5-dev:ppc64el (5.3.1-4ubuntu1) ... Setting up gcc-5 (5.3.1-4ubuntu1) ... Setting up libstdc++-5-dev:ppc64el (5.3.1-4ubuntu1) ... Setting up g++-5 (5.3.1-4ubuntu1) ... Setting up libprocps4:ppc64el (2:3.3.10-4ubuntu1) ... Setting up procps (2:3.3.10-4ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (228-2ubuntu2) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. virtio network devices detected, disabling predictable interface names in /etc/systemd/network/50-virtio-kernel-names.link Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Removing obsolete conffile /etc/init.d/lvm2 ... Setting up perl-modules-5.22 (5.22.1-3) ... Setting up libperl5.22:ppc64el (5.22.1-3) ... Setting up perl (5.22.1-3) ... Setting up apt (1.1.10) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libffi6:ppc64el (3.2.1-4) ... Setting up libp11-kit0:ppc64el (0.23.2-3) ... Setting up libtasn1-6:ppc64el (4.7-3) ... Setting up libgnutls-deb0-28:ppc64el (3.3.18-1ubuntu1) ... Setting up libldap-2.4-2:ppc64el (2.4.41+dfsg-1ubuntu3) ... Setting up libpng12-0:ppc64el (1.2.54-1) ... Setting up libsqlite3-0:ppc64el (3.9.2-1) ... Setting up libssl1.0.0:ppc64el (1.0.2e-1ubuntu1) ... Setting up dmsetup (2:1.02.110-1ubuntu2) ... Setting up libkrb5support0:ppc64el (1.13.2+dfsg-4) ... Setting up libk5crypto3:ppc64el (1.13.2+dfsg-4) ... Setting up libkeyutils1:ppc64el (1.5.9-8ubuntu1) ... Setting up libkrb5-3:ppc64el (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:ppc64el (1.13.2+dfsg-4) ... Setting up libidn11:ppc64el (1.32-3ubuntu1) ... Setting up libcurl3-gnutls:ppc64el (7.45.0-1ubuntu1) ... Setting up apt-transport-https (1.1.10) ... Setting up libdbus-1-3:ppc64el (1.10.6-1ubuntu1) ... Setting up openssl (1.0.2e-1ubuntu1) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-16ubuntu2) ... Setting up libdpkg-perl (1.18.3ubuntu1) ... Setting up dpkg-dev (1.18.3ubuntu1) ... Setting up gcc (4:5.2.1-16ubuntu2) ... Setting up g++ (4:5.2.1-16ubuntu2) ... Setting up pkg-create-dbgsym (0.70) ... Setting up pkgbinarymangler (125) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-2ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8788403', 'ppc64el', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=xenial-proposed', '--purge=never', '--nolog', 'rna-star_2.5.0a+dfsg-1.dsc'] Initiating build PACKAGEBUILD-8788403 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.2.0-22-generic #27-Ubuntu SMP Thu Dec 17 22:54:17 UTC 2015 ppc64le sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-ppc64el-022.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ rna-star 2.5.0a+dfsg-1 (ppc64el) 31 Dec 2015 17:08 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: rna-star Version: 2.5.0a+dfsg-1 Source Version: 2.5.0a+dfsg-1 Distribution: xenial-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/rna-star-DGx1wL/rna-star-2.5.0a+dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/rna-star-DGx1wL' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8788403/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── rna-star_2.5.0a+dfsg-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot grep: debian/control: No such file or directory /usr/bin/pkgsanitychecks: Error: not in source package directory /usr/bin/pkgstriptranslations: Error: not in source package directory /usr/bin/pkgmaintainermangler: Error: not in source package directory /usr/bin/pkgstripfiles: Error: not in source package directory dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-M6qYGQ/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Packages [530 B] Ign:4 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Packages [530 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-M6qYGQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libhts-dev, vim-common, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libhts-dev, vim-common, zlib1g-dev grep: debian/control: No such file or directory /usr/bin/pkgsanitychecks: Error: not in source package directory /usr/bin/pkgstriptranslations: Error: not in source package directory /usr/bin/pkgmaintainermangler: Error: not in source package directory /usr/bin/pkgstripfiles: Error: not in source package directory dpkg-deb: building package 'sbuild-build-depends-rna-star-dummy' in '/«BUILDDIR»/resolver-2NUmA8/apt_archive/sbuild-build-depends-rna-star-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Sources [440 B] Get:5 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Packages [705 B] Ign:4 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Sources [440 B] Get:5 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Packages [705 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install rna-star build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf vim-common zlib1g-dev Suggested packages: wamerican | wordlist whois vacation dh-make gettext-doc autopoint groff less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl vim | vim-gnome | vim-gtk | vim-athena | vim-nox | vim-tiny The following NEW packages will be installed: bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf sbuild-build-depends-rna-star-dummy vim-common zlib1g-dev 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. Need to get 15.5 MB/15.5 MB of archives. After this operation, 64.3 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-rna-star-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-2NUmA8/apt_archive ./ sbuild-build-depends-rna-star-dummy 0.invalid.0 [950 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main ppc64el groff-base ppc64el 1.22.3-4 [1367 kB] Get:3 http://ftpmaster.internal/ubuntu xenial/main ppc64el bsdmainutils ppc64el 9.0.6ubuntu1 [175 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main ppc64el libpipeline1 ppc64el 1.4.1-1 [24.0 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main ppc64el man-db ppc64el 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main ppc64el libunistring0 ppc64el 0.9.3-5.2ubuntu1 [269 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main ppc64el libmagic1 ppc64el 1:5.25-2ubuntu1 [220 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main ppc64el file ppc64el 1:5.25-2ubuntu1 [21.7 kB] Get:9 http://ftpmaster.internal/ubuntu xenial-proposed/main ppc64el vim-common ppc64el 2:7.4.826-1ubuntu2 [103 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main ppc64el libasprintf0v5 ppc64el 0.19.6-1ubuntu1 [7112 B] Get:11 http://ftpmaster.internal/ubuntu xenial/main ppc64el gettext-base ppc64el 0.19.6-1ubuntu1 [47.5 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main ppc64el libglib2.0-0 ppc64el 2.47.3-3 [1039 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main ppc64el libicu55 ppc64el 55.1-6ubuntu1 [7740 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main ppc64el libxml2 ppc64el 2.9.2+zdfsg1-4ubuntu2 [611 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main ppc64el libcroco3 ppc64el 0.6.11-1 [75.6 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main ppc64el gettext ppc64el 0.19.6-1ubuntu1 [1097 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main ppc64el po-debconf all 1.0.18 [234 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main ppc64el libarchive-zip-perl all 1.55-1 [84.1 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main ppc64el libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main ppc64el dh-strip-nondeterminism all 0.014-1 [5596 B] Get:23 http://ftpmaster.internal/ubuntu xenial/main ppc64el debhelper all 9.20151126ubuntu1 [741 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/universe ppc64el libhts1 ppc64el 1.2.1-2ubuntu1 [227 kB] Get:25 http://ftpmaster.internal/ubuntu xenial/universe ppc64el libhts-dev ppc64el 1.2.1-2ubuntu1 [296 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/main ppc64el zlib1g-dev ppc64el 1:1.2.8.dfsg-2ubuntu4 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.5 MB in 0s (23.0 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12167 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-4_ppc64el.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_ppc64el.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../libpipeline1_1.4.1-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_ppc64el.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:ppc64el. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_ppc64el.deb ... Unpacking libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_ppc64el.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package vim-common. Preparing to unpack .../vim-common_2%3a7.4.826-1ubuntu2_ppc64el.deb ... Unpacking vim-common (2:7.4.826-1ubuntu2) ... Selecting previously unselected package libasprintf0v5:ppc64el. Preparing to unpack .../libasprintf0v5_0.19.6-1ubuntu1_ppc64el.deb ... Unpacking libasprintf0v5:ppc64el (0.19.6-1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.6-1ubuntu1_ppc64el.deb ... Unpacking gettext-base (0.19.6-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.47.3-3_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.47.3-3) ... Selecting previously unselected package libicu55:ppc64el. Preparing to unpack .../libicu55_55.1-6ubuntu1_ppc64el.deb ... Unpacking libicu55:ppc64el (55.1-6ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4ubuntu2_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.2+zdfsg1-4ubuntu2) ... Selecting previously unselected package libcroco3:ppc64el. Preparing to unpack .../libcroco3_0.6.11-1_ppc64el.deb ... Unpacking libcroco3:ppc64el (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.6-1ubuntu1_ppc64el.deb ... Unpacking gettext (0.19.6-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.55-1_all.deb ... Unpacking libarchive-zip-perl (1.55-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.014-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... 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Preparing to unpack .../sbuild-build-depends-rna-star-dummy.deb ... Unpacking sbuild-build-depends-rna-star-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:ppc64el (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Setting up libmagic1:ppc64el (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up vim-common (2:7.4.826-1ubuntu2) ... Setting up libasprintf0v5:ppc64el (0.19.6-1ubuntu1) ... Setting up gettext-base (0.19.6-1ubuntu1) ... Setting up libglib2.0-0:ppc64el (2.47.3-3) ... No schema files found: doing nothing. Setting up libicu55:ppc64el (55.1-6ubuntu1) ... Setting up libxml2:ppc64el (2.9.2+zdfsg1-4ubuntu2) ... Setting up libcroco3:ppc64el (0.6.11-1) ... Setting up gettext (0.19.6-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.55-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhts1:ppc64el (1.2.1-2ubuntu1) ... Setting up libhts-dev:ppc64el (1.2.1-2ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.8.dfsg-2ubuntu4) ... Setting up debhelper (9.20151126ubuntu1) ... Setting up sbuild-build-depends-rna-star-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.014-1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.2.0-22-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.25.90.20151211-0ubuntu2 dpkg-dev_1.18.3ubuntu1 g++-5_5.3.1-4ubuntu1 gcc-5_5.3.1-4ubuntu1 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.3.1-4ubuntu1 libstdc++6_5.3.1-4ubuntu1 linux-libc-dev_4.3.0-5.16 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.10 apt-transport-https_1.1.10 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151211-0ubuntu2 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.3.1-4ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151126ubuntu1 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu2 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-16ubuntu2 g++-5_5.3.1-4ubuntu1 gcc_4:5.2.1-16ubuntu2 gcc-5_5.3.1-4ubuntu1 gcc-5-base_5.3.1-4ubuntu1 gettext_0.19.6-1ubuntu1 gettext-base_0.19.6-1ubuntu1 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu9 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.1.10 libarchive-zip-perl_1.55-1 libasan2_5.3.1-4ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.6-1ubuntu1 libatomic1_5.3.1-4ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu5 libc-dev-bin_2.21-0ubuntu5 libc6_2.21-0ubuntu5 libc6-dev_2.21-0ubuntu5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-4ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu1 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu2 libdpkg-perl_1.18.3ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.3.1-4ubuntu1 libgcc1_1:5.3.1-4ubuntu1 libgcrypt20_1.6.4-4 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.3.1-4ubuntu1 libgpg-error0_1.21-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhts-dev_1.2.1-2ubuntu1 libhts1_1.2.1-2ubuntu1 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libisl13_0.14-2 libisl15_0.15-3 libitm1_5.3.1-4ubuntu1 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-8ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2ubuntu1 libncursesw5_6.0+20151024-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7.1ubuntu1 libperl5.22_5.22.1-3 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_1:3.3.9-1ubuntu8 libprocps4_2:3.3.10-4ubuntu1 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu3 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2e-1ubuntu1 libstdc++-5-dev_5.3.1-4ubuntu1 libstdc++6_5.3.1-4ubuntu1 libsystemd0_228-2ubuntu2 libtasn1-6_4.7-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2ubuntu1 libubsan0_5.3.1-4ubuntu1 libudev1_228-2ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu2 linux-libc-dev_4.3.0-5.16 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu5 ncurses-base_6.0+20151024-2ubuntu1 ncurses-bin_6.0+20151024-2ubuntu1 openssl_1.0.2e-1ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 pkg-create-dbgsym_0.70 pkgbinarymangler_125 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu1 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rna-star-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu2 systemd-sysv_228-2ubuntu2 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu2 util-linux_2.27.1-1ubuntu3 vim-common_2:7.4.826-1ubuntu2 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu Dec 31 11:53:05 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./rna-star_2.5.0a+dfsg-1.dsc dpkg-source: info: extracting rna-star in rna-star-2.5.0a+dfsg dpkg-source: info: unpacking rna-star_2.5.0a+dfsg.orig.tar.xz dpkg-source: info: unpacking rna-star_2.5.0a+dfsg-1.debian.tar.xz dpkg-source: info: applying donotuse_own_htslib.patch dpkg-source: info: applying compilationstuff.patch dpkg-source: info: applying mips_shm_noreserve.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/rna-star-2.5.0a+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/rna-star-2.5.0a+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package rna-star dpkg-buildpackage: source version 2.5.0a+dfsg-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build rna-star-2.5.0a+dfsg dpkg-buildpackage: host architecture ppc64el fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg' cd source && /usr/bin/make clean make[2]: Entering directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg/source' rm -f *.o STAR STARstatic STARlong Depend.list make[2]: Leaving directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg/source' rm -f source/parametersDefault.xxd make[1]: Leaving directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg' cd source && /usr/bin/make CCFLAGS_common_add="-flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x" CCFLAGS="-flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x" LDFLAGS_add="-Wl,-Bsymbolic-functions -Wl,-z,relro" make[2]: Entering directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg/source' Makefile:85: Depend.list: No such file or directory xxd -i parametersDefault > parametersDefault.xxd echo BAMfunctions.cpp sjdbLoadFromFiles.cpp blocksOverlap.cpp ReadAlign_quantTranscriptome.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp PackedArray.cpp ReadAlign_createExtendWindowsWithAlign.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp sjdbPrepare.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Genome_insertSequences.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp Transcriptome.cpp OutSJ.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp GlobalVariables.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp serviceFuns.cpp ThreadControl.cpp InOutStreams.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp BAMoutput.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp ReadAlignChunk_mapChunk.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp genomeSAindex.cpp stringSubstituteAll.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_storeAligns.cpp sysRemoveDir.cpp Quantifications.cpp bamRemoveDuplicates.cpp ReadAlign_stitchWindowSeeds.cpp SharedMemory.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp SequenceFuns.cpp extendAlign.cpp bam_cat.c BAMfunctions.cpp sjdbLoadFromFiles.cpp blocksOverlap.cpp ReadAlign_quantTranscriptome.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp PackedArray.cpp ReadAlign_createExtendWindowsWithAlign.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp sjdbPrepare.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Genome_insertSequences.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp Transcriptome.cpp OutSJ.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp GlobalVariables.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp serviceFuns.cpp ThreadControl.cpp InOutStreams.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp BAMoutput.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp ReadAlignChunk_mapChunk.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp genomeSAindex.cpp stringSubstituteAll.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_storeAligns.cpp sysRemoveDir.cpp Quantifications.cpp bamRemoveDuplicates.cpp ReadAlign_stitchWindowSeeds.cpp SharedMemory.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp SequenceFuns.cpp extendAlign.cpp bam_cat.c /bin/rm -f ./Depend.list g++ -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:08:56 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -MM BAMfunctions.cpp sjdbLoadFromFiles.cpp blocksOverlap.cpp ReadAlign_quantTranscriptome.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp PackedArray.cpp ReadAlign_createExtendWindowsWithAlign.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp sjdbPrepare.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Genome_insertSequences.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp Transcriptome.cpp OutSJ.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp GlobalVariables.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp serviceFuns.cpp ThreadControl.cpp InOutStreams.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp BAMoutput.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp ReadAlignChunk_mapChunk.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp genomeSAindex.cpp stringSubstituteAll.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_storeAligns.cpp sysRemoveDir.cpp Quantifications.cpp bamRemoveDuplicates.cpp ReadAlign_stitchWindowSeeds.cpp SharedMemory.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp SequenceFuns.cpp extendAlign.cpp bam_cat.c parametersDefault.xxd >> Depend.list g++: warning: parametersDefault.xxd: linker input file unused because linking not done g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' SharedMemory.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' PackedArray.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' SuffixArrayFuns.cpp SuffixArrayFuns.cpp:191:82: warning: unused parameter 'dirR' [-Wunused-parameter] uint suffixArraySearch(char** s2, uint S, uint N, char* G, PackedArray& SA, bool dirR, uint i1, uint i2, uint L, Parameters* P) { ^ SuffixArrayFuns.cpp: In function 'long long unsigned int compareSeqToGenome1(char**, long long unsigned int, long long unsigned int, long long unsigned int, char*, PackedArray&, long long unsigned int, bool, long long unsigned int, int&, Parameters*)': SuffixArrayFuns.cpp:358:1: warning: control reaches end of non-void function [-Wreturn-type] }; ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' STAR.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' Parameters.cpp Parameters.cpp: In member function 'void Parameters::inputParameters(int, char**)': Parameters.cpp:1075:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int ii=0; iioutSAMattrOrder.size();ii++) { ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_outputTranscriptSJ.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_outputTranscriptCIGARp.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_createExtendWindowsWithAlign.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_assignAlignToWindow.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_oneRead.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_stitchWindowSeeds.cpp ReadAlign_stitchWindowSeeds.cpp:255:1: warning: multi-line comment [-Wcomment] // if ( trA.canonSJ[isj]>=0 && \ ^ ReadAlign_stitchWindowSeeds.cpp: In member function 'void ReadAlign::stitchWindowSeeds(long long unsigned int, long long unsigned int, char*, char*, char*)': ReadAlign_stitchWindowSeeds.cpp:132:18: warning: unused variable 'iS1' [-Wunused-variable] uint iS1=seedChain[seedN-1]; ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_chimericDetection.cpp ReadAlign_chimericDetection.cpp: In member function 'bool ReadAlign::chimericDetection()': ReadAlign_chimericDetection.cpp:345:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] bamIrepr=( (itr%2)==(trChim[itr].Str) && chimType!=3) ? bamN+1 : bamN;//this is the mate that is chimerically split ^ ReadAlign_chimericDetection.cpp:347:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] alignType=( (itr%2)==(trChim[itr].Str) ) ? -12 : -11; //right:left chimeric junction ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' stitchWindowAligns.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' extendAlign.cpp extendAlign.cpp: In function 'bool extendAlign(char*, char*, char*, long long unsigned int, long long unsigned int, int, int, long long unsigned int, long long unsigned int, long long unsigned int, long long unsigned int, double, bool, Transcript*)': extendAlign.cpp:26:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((gStart+iG)==-1 || G[iG]==5) {//prohibit extension through chr boundary ^ extendAlign.cpp:64:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((gStart+iG)==-1 || G[iG]==5 || R[iS]==MARK_FRAG_SPACER_BASE) break; //no extension through chr boundary, or through the spacer between fragments ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' stitchAlignToTranscript.cpp stitchAlignToTranscript.cpp:376:1: warning: multi-line comment [-Wcomment] // if ( extendAlign(R, Q, G, rBstart-1, gBstart-1, -1, -1, gBstart-trA->exons[0][EX_G]+trA->exons[0][EX_R], trA->nMatch, trA->nMM, outFilterMismatchNmaxTotal, P->outFilterMismatchNoverLmax, \ ^ stitchAlignToTranscript.cpp: In function 'int stitchAlignToTranscript(long long unsigned int, long long unsigned int, long long unsigned int, long long unsigned int, long long unsigned int, long long unsigned int, long long unsigned int, Parameters*, char*, char*, char*, Transcript*, long long unsigned int)': stitchAlignToTranscript.cpp:302:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] && ( jCan<0 || (jCan<7 && nMM<=P->alignSJstitchMismatchNmax[(jCan+1)/2]) ) ) ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' alignSmithWaterman.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' genomeGenerate.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' genomeParametersWrite.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' genomeScanFastaFiles.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' genomeSAindex.cpp genomeSAindex.cpp: In function 'void genomeSAindexChunk(char*, PackedArray&, Parameters*, PackedArray&, long long unsigned int, long long unsigned int)': genomeSAindex.cpp:183:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( iL==iL4 ) {//this suffix contains N and does not belong in SAi ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' Genome_insertSequences.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' insertSeqSA.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' funCompareUintAndSuffixes.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' TimeFunctions.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ErrorWarning.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' loadGTF.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' streamFuns.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' stringSubstituteAll.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' Transcriptome.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' Transcriptome_quantAlign.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_quantTranscriptome.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' Quantifications.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' Transcriptome_geneCountsAddAlign.cpp Transcriptome_geneCountsAddAlign.cpp: In member function 'void Transcriptome::geneCountsAddAlign(long long unsigned int, Transcript**)': Transcriptome_geneCountsAddAlign.cpp:47:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (gene1.at(itype)!=exG.g[e1]) {//another gene overlaps this read ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' sjdbLoadFromFiles.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' sjdbLoadFromStream.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' sjdbPrepare.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' sjdbBuildIndex.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' sjdbInsertJunctions.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' mapThreadsSpawn.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' BAMoutput.cpp g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' BAMfunctions.cpp BAMfunctions.cpp: In function 'int bam_read1_fromArray(char*, bam1_t*)': BAMfunctions.cpp:32:21: warning: unused variable 'ret' [-Wunused-variable] int32_t block_len, ret, i; ^ BAMfunctions.cpp:32:26: warning: unused variable 'i' [-Wunused-variable] int32_t block_len, ret, i; ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' ReadAlign_alignBAM.cpp ReadAlign_alignBAM.cpp: In instantiation of 'int bamAttrArrayWriteInt(intType, const char*, char*, Parameters*) [with intType = long long unsigned int]': ReadAlign_alignBAM.cpp:194:78: required from here ReadAlign_alignBAM.cpp:92:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (x >= -127) { ^ ReadAlign_alignBAM.cpp:94:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (x >= -32767) { ^ ReadAlign_alignBAM.cpp:98:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!(x>=-2147483647)) { ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' BAMbinSortByCoordinate.cpp BAMbinSortByCoordinate.cpp:6:104: warning: unused parameter 'bgzfBAM' [-Wunused-parameter] void BAMbinSortByCoordinate(uint32 iBin, uint binN, uint binS, uint nThreads, string dirBAMsort, BGZF *bgzfBAM, Parameters *P) { ^ g++ -c -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Thu Dec 31 17:09:00 UTC 2015 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' signalFromBAM.cpp signalFromBAM.cpp: In function 'void signalFromBAM(std::__cxx11::string, std::__cxx11::string, Parameters)': signalFromBAM.cpp:63:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (uint32_t is=0;is "+ outFileTmp+"/readFilesIn.info 2>&1").c_str()); ^ ReadAlign_alignBAM.cpp: In member function 'alignBAM.constprop': ReadAlign_alignBAM.cpp:375:34: warning: 'trimR1' may be used uninitialized in this function [-Wmaybe-uninitialized] seqMateLength-=trimR1; ^ ReadAlign_alignBAM.cpp:171:22: note: 'trimR1' was declared here uint trimL1, trimR1; ^ ReadAlign_alignBAM.cpp:371:34: warning: 'trimL1' may be used uninitialized in this function [-Wmaybe-uninitialized] seqMateLength-=trimL1; ^ ReadAlign_alignBAM.cpp:171:14: note: 'trimL1' was declared here uint trimL1, trimR1; ^ signalFromBAM.cpp: In function 'signalFromBAM.constprop': signalFromBAM.cpp:175:29: warning: 'chrLen' may be used uninitialized in this function [-Wmaybe-uninitialized] if (aG>=chrLen) { ^ signalFromBAM.cpp:77:18: note: 'chrLen' was declared here uint32_t chrLen; ^ Parameters_openReadsFiles.cpp: In member function 'openReadsFiles': Parameters_openReadsFiles.cpp:30:20: warning: variable 'imate' might be clobbered by 'longjmp' or 'vfork' [-Wclobbered] for (uint imate=0;imate= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform ppc64el: rna-star dh_gencontrol debug symbol wrapper: packages to act on: rna-star dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package rna-star (pkgdir debian/rna-star, ddeb package dir debian/rna-star-dbgsym) dh_gencontrol debug symbol wrapper: building rna-star-dbgsym_2.5.0a+dfsg-1_ppc64el.ddeb dpkg-deb: building package 'rna-star-dbgsym' in '../rna-star-dbgsym_2.5.0a+dfsg-1_ppc64el.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile rna-star-dbgsym_2.5.0a+dfsg-1_ppc64el.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 125 pkgstriptranslations: processing rna-star (in debian/rna-star); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/rna-star/DEBIAN/control, package rna-star, directory debian/rna-star DEBUG: wait rna-star 1:rna-star DEBUG: clear rna-star 1:rna-star DEBUG: done rna-star pkgstripfiles: Running PNG optimization (using 4 cpus) for package rna-star ... pkgstripfiles: No PNG files. dpkg-deb: building package 'rna-star' in '../rna-star_2.5.0a+dfsg-1_ppc64el.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../rna-star_2.5.0a+dfsg-1_ppc64el.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build rna-star-2.5.0a+dfsg dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151231-1710 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ rna-star_2.5.0a+dfsg-1_ppc64el.changes: ─────────────────────────────────────── Format: 1.8 Date: Thu, 31 Dec 2015 12:41:06 +0100 Source: rna-star Binary: rna-star Architecture: ppc64el Version: 2.5.0a+dfsg-1 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: rna-star - ultrafast universal RNA-seq aligner Changes: rna-star (2.5.0a+dfsg-1) unstable; urgency=medium . * Packaging moved from svn to git * New upstream version Checksums-Sha1: 96bcd52a2144dad3705e7b2b732ed56e6e240157 756888 rna-star-dbgsym_2.5.0a+dfsg-1_ppc64el.ddeb dc7d45b68319d6160e7cc41a6a6d8ce89d1d2806 349688 rna-star_2.5.0a+dfsg-1_ppc64el.deb Checksums-Sha256: 5b4071be55673fab4c696d8713744f1b3e99bc429242e975be577a4d4eda24e8 756888 rna-star-dbgsym_2.5.0a+dfsg-1_ppc64el.ddeb b9f7fd5fd29706d430f97d46fe078d39ea8394123b73e3c2afc6c3986588db79 349688 rna-star_2.5.0a+dfsg-1_ppc64el.deb Files: 9bd70e8148bf3fc2156b6dedb9a4a12b 756888 science extra rna-star-dbgsym_2.5.0a+dfsg-1_ppc64el.ddeb 7f6656b4124a5d731d3e6246f9639b68 349688 science optional rna-star_2.5.0a+dfsg-1_ppc64el.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ rna-star_2.5.0a+dfsg-1_ppc64el.deb ────────────────────────────────── new debian package, version 2.0. size 349688 bytes: control archive=1339 bytes. 1454 bytes, 25 lines control 602 bytes, 9 lines md5sums Package: rna-star Version: 2.5.0a+dfsg-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 812 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.4.4), libgomp1 (>= 4.9), libhts1 (>= 1.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://code.google.com/p/rna-star/ Description: ultrafast universal RNA-seq aligner Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy. drwxr-xr-x root/root 0 2015-12-31 17:10 ./ drwxr-xr-x root/root 0 2015-12-31 17:10 ./usr/ drwxr-xr-x root/root 0 2015-12-31 17:10 ./usr/bin/ -rwxr-xr-x root/root 555784 2015-12-31 17:10 ./usr/bin/STAR drwxr-xr-x root/root 0 2015-12-31 17:10 ./usr/share/ drwxr-xr-x root/root 0 2015-12-31 17:10 ./usr/share/doc-base/ -rw-r--r-- root/root 1179 2015-12-31 11:51 ./usr/share/doc-base/rna-star drwxr-xr-x root/root 0 2015-12-31 17:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-12-31 17:10 ./usr/share/doc/rna-star/ -rw-r--r-- root/root 220 2015-12-31 11:51 ./usr/share/doc/rna-star/README.Debian -rw-r--r-- root/root 3193 2015-11-07 19:01 ./usr/share/doc/rna-star/README.md -rw-r--r-- root/root 2118 2015-11-07 19:01 ./usr/share/doc/rna-star/RELEASEnotes.md.gz -rw-r--r-- root/root 249630 2015-11-07 19:01 ./usr/share/doc/rna-star/STARmanual.pdf -rw-r--r-- root/root 435 2015-12-31 11:51 ./usr/share/doc/rna-star/changelog.Debian.gz -rw-r--r-- root/root 2444 2015-12-31 11:51 ./usr/share/doc/rna-star/copyright drwxr-xr-x root/root 0 2015-12-31 17:10 ./usr/share/man/ drwxr-xr-x root/root 0 2015-12-31 17:10 ./usr/share/man/man1/ -rw-r--r-- root/root 814 2015-12-31 17:10 ./usr/share/man/man1/STAR.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: ppc64el Build-Space: 20580 Build-Time: 77 Distribution: xenial-proposed Host Architecture: ppc64el Install-Time: 10 Job: rna-star_2.5.0a+dfsg-1.dsc Machine Architecture: ppc64el Package: rna-star Package-Time: 87 Source-Version: 2.5.0a+dfsg-1 Space: 20580 Status: successful Version: 2.5.0a+dfsg-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151231-1710 Build needed 00:01:27, 20580k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8788403'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8788403/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8788403'] Unmounting chroot for build PACKAGEBUILD-8788403... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8788403'] Removing build PACKAGEBUILD-8788403