RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux denneed03 4.4.0-21-powerpc64-smp #37~14.04.1-Ubuntu SMP Wed Apr 20 16:54:18 UTC 2016 ppc64 Buildd toolchain package versions: launchpad-buildd_138 python-lpbuildd_138 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 26 Apr 14:33:56 ntpdate[17592]: adjust time server 10.211.37.1 offset 0.006364 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9637174', '/home/buildd/filecache-default/9f1060e2bab22ae2edac374e1f3ab0aa330b1d76'] Unpacking chroot for build PACKAGEBUILD-9637174 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9637174'] Mounting chroot for build PACKAGEBUILD-9637174 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9637174', 'deb http://ftpmaster.internal/ubuntu yakkety main universe'] Overriding sources.list in build-PACKAGEBUILD-9637174 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9637174', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-9637174 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main powerpc Packages [1147 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [568 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/universe powerpc Packages [7310 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4355 kB] Fetched 13.6 MB in 21s (649 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 The following packages will be upgraded: bash binutils cpp-5 g++-5 gcc-5 gcc-5-base gcc-6-base hostname initscripts libasan2 libatomic1 libcc1-0 libgcc-5-dev libgcc1 libgomp1 libpng12-0 libslang2 libstdc++-5-dev libstdc++6 libubsan0 optipng sysv-rc sysvinit-utils tzdata 24 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After this operation, 176 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main powerpc bash powerpc 4.3-14ubuntu2 [525 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main powerpc hostname powerpc 3.17ubuntu1 [11.4 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main powerpc sysvinit-utils powerpc 2.88dsf-59.3ubuntu4 [21.3 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main powerpc sysv-rc all 2.88dsf-59.3ubuntu4 [18.2 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main powerpc gcc-6-base powerpc 6.0.1-2ubuntu13 [15.7 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgcc1 powerpc 1:6.0.1-2ubuntu13 [27.0 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main powerpc libstdc++6 powerpc 6.0.1-2ubuntu13 [409 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main powerpc initscripts powerpc 2.88dsf-59.3ubuntu4 [24.5 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main powerpc tzdata all 2016d-2 [168 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main powerpc g++-5 powerpc 5.3.1-16ubuntu2 [28.6 MB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main powerpc gcc-5 powerpc 5.3.1-16ubuntu2 [8213 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main powerpc cpp-5 powerpc 5.3.1-16ubuntu2 [26.6 MB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcc1-0 powerpc 6.0.1-2ubuntu13 [30.2 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main powerpc binutils powerpc 2.26-8ubuntu3 [2218 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgomp1 powerpc 6.0.1-2ubuntu13 [69.5 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main powerpc libatomic1 powerpc 6.0.1-2ubuntu13 [7432 B] Get:17 http://ftpmaster.internal/ubuntu yakkety/main powerpc libasan2 powerpc 5.3.1-16ubuntu2 [232 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main powerpc libubsan0 powerpc 6.0.1-2ubuntu13 [104 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main powerpc libstdc++-5-dev powerpc 5.3.1-16ubuntu2 [1362 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main powerpc libgcc-5-dev powerpc 5.3.1-16ubuntu2 [499 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main powerpc gcc-5-base powerpc 5.3.1-16ubuntu2 [17.2 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpng12-0 powerpc 1.2.54-6ubuntu1 [109 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main powerpc libslang2 powerpc 2.3.0-2ubuntu2 [366 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpng16-16 powerpc 1.6.21-4 [163 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main powerpc optipng powerpc 0.7.6-1build1 [80.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 69.9 MB in 1min 50s (631 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../bash_4.3-14ubuntu2_powerpc.deb ... Unpacking bash (4.3-14ubuntu2) over (4.3-14ubuntu1) ... Setting up bash (4.3-14ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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Unpacking libubsan0:powerpc (6.0.1-2ubuntu13) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.3.1-16ubuntu2_powerpc.deb ... Unpacking libstdc++-5-dev:powerpc (5.3.1-16ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.3.1-16ubuntu2_powerpc.deb ... Unpacking libgcc-5-dev:powerpc (5.3.1-16ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5-base_5.3.1-16ubuntu2_powerpc.deb ... Unpacking gcc-5-base:powerpc (5.3.1-16ubuntu2) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libpng12-0_1.2.54-6ubuntu1_powerpc.deb ... Unpacking libpng12-0:powerpc (1.2.54-6ubuntu1) over (1.2.54-1ubuntu1) ... Preparing to unpack .../libslang2_2.3.0-2ubuntu2_powerpc.deb ... Unpacking libslang2:powerpc (2.3.0-2ubuntu2) over (2.3.0-2ubuntu1) ... Selecting previously unselected package libpng16-16:powerpc. Preparing to unpack .../libpng16-16_1.6.21-4_powerpc.deb ... Unpacking libpng16-16:powerpc (1.6.21-4) ... Preparing to unpack .../optipng_0.7.6-1build1_powerpc.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Processing triggers for systemd (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up sysv-rc (2.88dsf-59.3ubuntu4) ... Setting up initscripts (2.88dsf-59.3ubuntu4) ... Setting up tzdata (2016d-2) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Apr 26 18:36:21 UTC 2016. Universal Time is now: Tue Apr 26 18:36:21 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up gcc-5-base:powerpc (5.3.1-16ubuntu2) ... Setting up cpp-5 (5.3.1-16ubuntu2) ... Setting up libcc1-0:powerpc (6.0.1-2ubuntu13) ... Setting up binutils (2.26-8ubuntu3) ... Setting up libgomp1:powerpc (6.0.1-2ubuntu13) ... Setting up libatomic1:powerpc (6.0.1-2ubuntu13) ... Setting up libasan2:powerpc (5.3.1-16ubuntu2) ... Setting up libubsan0:powerpc (6.0.1-2ubuntu13) ... Setting up libgcc-5-dev:powerpc (5.3.1-16ubuntu2) ... Setting up gcc-5 (5.3.1-16ubuntu2) ... Setting up libstdc++-5-dev:powerpc (5.3.1-16ubuntu2) ... Setting up g++-5 (5.3.1-16ubuntu2) ... Setting up libpng12-0:powerpc (1.2.54-6ubuntu1) ... Setting up libslang2:powerpc (2.3.0-2ubuntu2) ... Setting up libpng16-16:powerpc (1.6.21-4) ... Setting up optipng (0.7.6-1build1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9637174', 'powerpc', 'yakkety', '-c', 'chroot:autobuild', '--arch=powerpc', '--dist=yakkety', '--purge=never', '--nolog', 'rna-star_2.5.0a+dfsg-1.dsc'] Initiating build PACKAGEBUILD-9637174 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 4.4.0-21-powerpc64-smp #37~14.04.1-Ubuntu SMP Wed Apr 20 16:54:18 UTC 2016 ppc sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on denneed03.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ rna-star 2.5.0a+dfsg-1 (powerpc) 26 Apr 2016 14:36 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: rna-star Version: 2.5.0a+dfsg-1 Source Version: 2.5.0a+dfsg-1 Distribution: yakkety Machine Architecture: powerpc Host Architecture: powerpc Build Architecture: powerpc I: NOTICE: Log filtering will replace 'build/rna-star-BP6LJ4/rna-star-2.5.0a+dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/rna-star-BP6LJ4' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9637174/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── rna-star_2.5.0a+dfsg-1.dsc exists in .; copying to chroot Check architectures ─────────────────── sh: 1: gcc: not found sbuild: warning: couldn't determine gcc system type, falling back to default (native compilation) Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-2XLDaV/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-2XLDaV/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-2XLDaV/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-2XLDaV/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-2XLDaV/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-2XLDaV/apt_archive ./ Packages [530 B] Fetched 2857 B in 0s (225 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-2XLDaV/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-2XLDaV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11971 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_powerpc.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libhts-dev, vim-common, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libhts-dev, vim-common, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-rna-star-dummy' in '/«BUILDDIR»/resolver-Aq3U3X/apt_archive/sbuild-build-depends-rna-star-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-Aq3U3X/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-Aq3U3X/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-Aq3U3X/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-Aq3U3X/apt_archive ./ Sources [440 B] Get:5 copy:/«BUILDDIR»/resolver-Aq3U3X/apt_archive ./ Packages [707 B] Fetched 3266 B in 0s (261 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-Aq3U3X/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install rna-star build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf vim-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl vim-gnome-py2 | vim-gtk-py2 | vim-gtk3-py2 | vim-athena-py2 | vim-nox-py2 Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl vim | vim-gnome | vim-gtk | vim-gtk3 | vim-athena | vim-nox | vim-tiny The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-rna-star-dummy vim-common zlib1g-dev 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 16.4 MB of archives. After this operation, 67.4 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-rna-star-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-Aq3U3X/apt_archive ./ sbuild-build-depends-rna-star-dummy 0.invalid.0 [950 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main powerpc groff-base powerpc 1.22.3-7 [1201 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main powerpc bsdmainutils powerpc 9.0.6ubuntu3 [172 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main powerpc libpipeline1 powerpc 1.4.1-2 [24.2 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main powerpc man-db powerpc 2.7.5-1 [835 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main powerpc libsigsegv2 powerpc 2.10-4 [13.7 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main powerpc libunistring0 powerpc 0.9.3-5.2ubuntu1 [254 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main powerpc libmagic1 powerpc 1:5.25-2ubuntu1 [214 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main powerpc file powerpc 1:5.25-2ubuntu1 [21.1 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main powerpc vim-common powerpc 2:7.4.1689-3ubuntu2 [103 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main powerpc libasprintf0v5 powerpc 0.19.7-2ubuntu3 [6592 B] Get:12 http://ftpmaster.internal/ubuntu yakkety/main powerpc gettext-base powerpc 0.19.7-2ubuntu3 [44.9 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main powerpc libglib2.0-0 powerpc 2.48.0-1ubuntu4 [964 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main powerpc libicu57 powerpc 57.1-1 [7481 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main powerpc libxml2 powerpc 2.9.3+dfsg1-1build1 [572 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main powerpc m4 powerpc 1.4.17-5 [185 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main powerpc autoconf all 2.69-9 [321 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main powerpc autotools-dev all 20150820.1 [39.8 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main powerpc automake all 1:1.15-4ubuntu1 [510 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main powerpc autopoint all 0.19.7-2ubuntu3 [406 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main powerpc libcroco3 powerpc 0.6.11-1 [69.3 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main powerpc gettext powerpc 0.19.7-2ubuntu3 [1013 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main powerpc intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main powerpc po-debconf all 1.0.19 [234 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main powerpc libarchive-zip-perl all 1.56-2 [84.1 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main powerpc libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtimedate-perl all 2.3000-2 [37.5 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main powerpc dh-strip-nondeterminism all 0.015-1 [4864 B] Get:29 http://ftpmaster.internal/ubuntu yakkety/main powerpc libtool all 2.4.6-0.1 [193 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main powerpc dh-autoreconf all 12 [15.8 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main powerpc debhelper all 9.20160403ubuntu1 [711 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/universe powerpc libhts1 powerpc 1.2.1-2ubuntu1 [208 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/universe powerpc libhts-dev powerpc 1.2.1-2ubuntu1 [261 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main powerpc zlib1g-dev powerpc 1:1.2.8.dfsg-2ubuntu4 [163 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.4 MB in 38s (431 kB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11971 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_powerpc.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_powerpc.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:powerpc. Preparing to unpack .../libpipeline1_1.4.1-2_powerpc.deb ... Unpacking libpipeline1:powerpc (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_powerpc.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libsigsegv2:powerpc. Preparing to unpack .../libsigsegv2_2.10-4_powerpc.deb ... Unpacking libsigsegv2:powerpc (2.10-4) ... Selecting previously unselected package libunistring0:powerpc. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_powerpc.deb ... Unpacking libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:powerpc. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_powerpc.deb ... Unpacking libmagic1:powerpc (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_powerpc.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package vim-common. Preparing to unpack .../vim-common_2%3a7.4.1689-3ubuntu2_powerpc.deb ... Unpacking vim-common (2:7.4.1689-3ubuntu2) ... Selecting previously unselected package libasprintf0v5:powerpc. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_powerpc.deb ... Unpacking libasprintf0v5:powerpc (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_powerpc.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... Selecting previously unselected package libglib2.0-0:powerpc. Preparing to unpack .../libglib2.0-0_2.48.0-1ubuntu4_powerpc.deb ... Unpacking libglib2.0-0:powerpc (2.48.0-1ubuntu4) ... Selecting previously unselected package libicu57:powerpc. Preparing to unpack .../libicu57_57.1-1_powerpc.deb ... Unpacking libicu57:powerpc (57.1-1) ... Selecting previously unselected package libxml2:powerpc. Preparing to unpack .../libxml2_2.9.3+dfsg1-1build1_powerpc.deb ... Unpacking libxml2:powerpc (2.9.3+dfsg1-1build1) ... Selecting previously unselected package m4. 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Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.56-2_all.deb ... Unpacking libarchive-zip-perl (1.56-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.015-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.015-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.015-1_all.deb ... Unpacking dh-strip-nondeterminism (0.015-1) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.6-0.1_all.deb ... Unpacking libtool (2.4.6-0.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20160403ubuntu1_all.deb ... Unpacking debhelper (9.20160403ubuntu1) ... Selecting previously unselected package libhts1:powerpc. Preparing to unpack .../libhts1_1.2.1-2ubuntu1_powerpc.deb ... Unpacking libhts1:powerpc (1.2.1-2ubuntu1) ... Selecting previously unselected package libhts-dev:powerpc. Preparing to unpack .../libhts-dev_1.2.1-2ubuntu1_powerpc.deb ... Unpacking libhts-dev:powerpc (1.2.1-2ubuntu1) ... Selecting previously unselected package zlib1g-dev:powerpc. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4_powerpc.deb ... Unpacking zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu4) ... Selecting previously unselected package sbuild-build-depends-rna-star-dummy. Preparing to unpack .../sbuild-build-depends-rna-star-dummy_0.invalid.0_powerpc.deb ... Unpacking sbuild-build-depends-rna-star-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:powerpc (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsigsegv2:powerpc (2.10-4) ... Setting up libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Setting up libmagic1:powerpc (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up vim-common (2:7.4.1689-3ubuntu2) ... Setting up libasprintf0v5:powerpc (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:powerpc (2.48.0-1ubuntu4) ... No schema files found: doing nothing. Setting up libicu57:powerpc (57.1-1) ... Setting up libxml2:powerpc (2.9.3+dfsg1-1build1) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libcroco3:powerpc (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.015-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up libhts1:powerpc (1.2.1-2ubuntu1) ... Setting up libhts-dev:powerpc (1.2.1-2ubuntu1) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu4) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up sbuild-build-depends-rna-star-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.015-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.4.0-21-powerpc64-smp powerpc (ppc) Toolchain package versions: binutils_2.26-8ubuntu3 dpkg-dev_1.18.4ubuntu1 g++-5_5.3.1-16ubuntu2 gcc-5_5.3.1-16ubuntu2 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-16ubuntu2 libstdc++6_6.0.1-2ubuntu13 linux-libc-dev_4.4.0-21.37 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.10ubuntu1 apt-transport-https_1.2.10ubuntu1 autoconf_2.69-9 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20150820.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 binutils_2.26-8ubuntu3 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-16ubuntu2 dash_0.5.8-2.1ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20160403ubuntu1 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu10 dpkg_1.18.4ubuntu1 dpkg-dev_1.18.4ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-16ubuntu2 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-16ubuntu2 gcc-5-base_5.3.1-16ubuntu2 gcc-6-base_6.0.1-2ubuntu13 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.24-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.17ubuntu1 init_1.29ubuntu1 init-system-helpers_1.29ubuntu1 initscripts_2.88dsf-59.3ubuntu4 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.2.10ubuntu1 libarchive-zip-perl_1.56-2 libasan2_5.3.1-16ubuntu2 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.0.1-2ubuntu13 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.27.1-6ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_6.0.1-2ubuntu13 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu10 libdpkg-perl_1.18.4ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-6ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgcc-5-dev_5.3.1-16ubuntu2 libgcc1_1:6.0.1-2ubuntu13 libgcrypt20_1.6.5-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.0-1ubuntu4 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.10-4ubuntu1 libgomp1_6.0.1-2ubuntu13 libgpg-error0_1.21-2ubuntu1 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhts-dev_1.2.1-2ubuntu1 libhts1_1.2.1-2ubuntu1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libisl15_0.16.1-1 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.1-9 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-4 libprocps4_2:3.3.10-4ubuntu2 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d-1build1 libsasl2-2_2.1.26.dfsg1-14build1 libsasl2-modules-db_2.1.26.dfsg1-14build1 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.4-3build2 libsemanage-common_2.3-1build3 libsemanage1_2.3-1build3 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu2 libsmartcols1_2.27.1-6ubuntu3 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-16ubuntu2 libstdc++6_6.0.1-2ubuntu13 libsystemd0_229-4ubuntu4 libtasn1-6_4.7-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.0.1-2ubuntu13 libudev1_229-4ubuntu4 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.3+dfsg1-1build1 linux-libc-dev_4.4.0-21.37 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 m4_1.4.17-5 make_4.1-6 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rna-star-dummy_0.invalid.0 sed_4.2.2-7 sensible-utils_0.0.9 systemd_229-4ubuntu4 systemd-sysv_229-4ubuntu4 sysv-rc_2.88dsf-59.3ubuntu4 sysvinit-utils_2.88dsf-59.3ubuntu4 tar_1.28-2.1 tzdata_2016d-2 ubuntu-keyring_2012.05.19 util-linux_2.27.1-6ubuntu3 vim-common_2:7.4.1689-3ubuntu2 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu Dec 31 11:53:05 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./rna-star_2.5.0a+dfsg-1.dsc dpkg-source: info: extracting rna-star in rna-star-2.5.0a+dfsg dpkg-source: info: unpacking rna-star_2.5.0a+dfsg.orig.tar.xz dpkg-source: info: unpacking rna-star_2.5.0a+dfsg-1.debian.tar.xz dpkg-source: info: applying donotuse_own_htslib.patch dpkg-source: info: applying compilationstuff.patch dpkg-source: info: applying mips_shm_noreserve.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=8 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/rna-star-2.5.0a+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/rna-star-2.5.0a+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package rna-star dpkg-buildpackage: source version 2.5.0a+dfsg-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build rna-star-2.5.0a+dfsg dpkg-buildpackage: host architecture powerpc fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg' cd source && /usr/bin/make clean make[2]: Entering directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg/source' rm -f *.o STAR STARstatic STARlong Depend.list make[2]: Leaving directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg/source' rm -f source/parametersDefault.xxd make[1]: Leaving directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg' cd source && /usr/bin/make CCFLAGS_common_add="-flto -flto -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" CCFLAGS="-flto -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" LDFLAGS_add="-Wl,-Bsymbolic-functions -Wl,-z,relro" make[2]: Entering directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg/source' Makefile:85: Depend.list: No such file or directory xxd -i parametersDefault > parametersDefault.xxd echo sjdbLoadFromFiles.cpp blocksOverlap.cpp sjdbPrepare.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp Stats.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp BAMbinSortByCoordinate.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp STAR.cpp ReadAlign_stitchWindowSeeds.cpp Transcriptome.cpp ReadAlign_oneRead.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Parameters_openReadsFiles.cpp Quantifications.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp GlobalVariables.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp ThreadControl.cpp Genome_insertSequences.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp ReadAlign_createExtendWindowsWithAlign.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp PackedArray.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_alignBAM.cpp genomeSAindex.cpp stringSubstituteAll.cpp bamRemoveDuplicates.cpp SharedMemory.cpp sysRemoveDir.cpp SequenceFuns.cpp BAMoutput.cpp InOutStreams.cpp ReadAlign_storeAligns.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp extendAlign.cpp BAMfunctions.cpp OutSJ.cpp bam_cat.c sjdbLoadFromFiles.cpp blocksOverlap.cpp sjdbPrepare.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp Stats.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp BAMbinSortByCoordinate.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp STAR.cpp ReadAlign_stitchWindowSeeds.cpp Transcriptome.cpp ReadAlign_oneRead.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Parameters_openReadsFiles.cpp Quantifications.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp GlobalVariables.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp ThreadControl.cpp Genome_insertSequences.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp ReadAlign_createExtendWindowsWithAlign.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp PackedArray.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_alignBAM.cpp genomeSAindex.cpp stringSubstituteAll.cpp bamRemoveDuplicates.cpp SharedMemory.cpp sysRemoveDir.cpp SequenceFuns.cpp BAMoutput.cpp InOutStreams.cpp ReadAlign_storeAligns.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp extendAlign.cpp BAMfunctions.cpp OutSJ.cpp bam_cat.c /bin/rm -f ./Depend.list g++ -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Tue Apr 26 18:37:10 UTC 2016 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -MM sjdbLoadFromFiles.cpp blocksOverlap.cpp sjdbPrepare.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp Stats.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp BAMbinSortByCoordinate.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp STAR.cpp ReadAlign_stitchWindowSeeds.cpp Transcriptome.cpp ReadAlign_oneRead.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Parameters_openReadsFiles.cpp Quantifications.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp GlobalVariables.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp ThreadControl.cpp Genome_insertSequences.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp ReadAlign_createExtendWindowsWithAlign.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp PackedArray.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_alignBAM.cpp genomeSAindex.cpp stringSubstituteAll.cpp bamRemoveDuplicates.cpp SharedMemory.cpp sysRemoveDir.cpp SequenceFuns.cpp BAMoutput.cpp InOutStreams.cpp ReadAlign_storeAligns.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp extendAlign.cpp BAMfunctions.cpp OutSJ.cpp bam_cat.c parametersDefault.xxd >> Depend.list g++: warning: parametersDefault.xxd: linker input file unused because linking not done g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Tue Apr 26 18:37:14 UTC 2016 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Tue Apr 26 18:37:14 UTC 2016 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' SharedMemory.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Tue Apr 26 18:37:14 UTC 2016 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Tue Apr 26 18:37:14 UTC 2016 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' PackedArray.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Tue Apr 26 18:37:14 UTC 2016 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' -flto -flto -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Tue Apr 26 18:37:14 UTC 2016 :/«BUILDDIR»/rna-star-2.5.0a+dfsg/source"' SuffixArrayFuns.cpp SuffixArrayFuns.cpp:191:82: warning: unused parameter ‘dirR’ [-Wunused-parameter] uint suffixArraySearch(char** s2, uint S, uint N, char* G, PackedArray& SA, bool dirR, uint i1, uint i2, uint L, Parameters* P) { ^ In file included from SuffixArrayFuns.h:4:0, from SuffixArrayFuns.cpp:1: SuffixArrayFuns.cpp: In function ‘long long unsigned int funCalcSAiFromSA(char*, PackedArray&, long long unsigned int, int, Parameters*, int&)’: IncludeDefine.h:58:17: error: ‘__uint128_t’ does not name a type #define uint128 __uint128_t ^ SuffixArrayFuns.cpp:425:18: note: in expansion of macro ‘uint128’ register uint128 g1=*( (uint128*) (G+SAstr) ); ^ SuffixArrayFuns.cpp:428:37: error: ‘g1’ was not declared in this scope register char g2=(char) g1; ^ In file included from SuffixArrayFuns.h:4:0, from SuffixArrayFuns.cpp:1: IncludeDefine.h:58:17: error: ‘__uint128_t’ does not name a type #define uint128 __uint128_t ^ SuffixArrayFuns.cpp:442:18: note: in expansion of macro ‘uint128’ register uint128 g1=*( (uint128*) (G+P->nGenome-SAstr-16) ); ^ SuffixArrayFuns.cpp:445:38: error: ‘g1’ was not declared in this scope register char g2=(char) (g1>>(8*(15-ii))); ^ SuffixArrayFuns.cpp: At global scope: SuffixArrayFuns.cpp:416:29: warning: unused parameter ‘G’ [-Wunused-parameter] uint funCalcSAiFromSA(char* G, PackedArray& SA, uint iSA, int L, Parameters* P, int & iL4) ^ SuffixArrayFuns.cpp: In function ‘long long unsigned int compareSeqToGenome1(char**, long long unsigned int, long long unsigned int, long long unsigned int, char*, PackedArray&, long long unsigned int, bool, long long unsigned int, int&, Parameters*)’: SuffixArrayFuns.cpp:358:1: warning: control reaches end of non-void function [-Wreturn-type] }; ^ make[2]: *** [SuffixArrayFuns.o] Error 1 Makefile:57: recipe for target 'SuffixArrayFuns.o' failed make[2]: Leaving directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg/source' debian/rules:17: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/«BUILDDIR»/rna-star-2.5.0a+dfsg' debian/rules:14: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160426-1437 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: powerpc Build-Space: 2016 Build-Time: 6 Distribution: yakkety Fail-Stage: build Host Architecture: powerpc Install-Time: 46 Job: rna-star_2.5.0a+dfsg-1.dsc Machine Architecture: powerpc Package: rna-star Package-Time: 53 Source-Version: 2.5.0a+dfsg-1 Space: 2016 Status: attempted Version: 2.5.0a+dfsg-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160426-1437 Build needed 00:00:53, 2016k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9637174'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9637174/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9637174'] Unmounting chroot for build PACKAGEBUILD-9637174... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9637174'] Removing build PACKAGEBUILD-9637174