RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-018 4.2.0-35-generic #40-Ubuntu SMP Tue Mar 15 23:09:41 UTC 2016 ppc64le Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2+ubuntu15.10.3 bzr-builder_0.7.3-0ubuntu1 bzr_2.6.0+bzr6602-2ubuntu4 git_1:2.5.0-1ubuntu0.2 dpkg-dev_1.18.2ubuntu5.1 python-debian_0.1.27ubuntu1 qemu-user-static_1:2.3+dfsg-5ubuntu9.2. Syncing the system clock with the buildd NTP service... 27 Apr 06:45:24 ntpdate[1590]: adjust time server 10.211.37.1 offset -0.000561 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9646838', '/home/buildd/filecache-default/8c9692db9ad0609beb9d2138f14eb797fb0ebd7a'] Unpacking chroot for build PACKAGEBUILD-9646838 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9646838'] Mounting chroot for build PACKAGEBUILD-9646838 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9646838', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9646838 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9646838', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-9646838 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main ppc64el Packages [1137 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [568 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el Packages [7278 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4356 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main ppc64el Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe ppc64el Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main ppc64el Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe ppc64el Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el Packages [139 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [61.1 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe ppc64el Packages [350 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [382 kB] Fetched 14.8 MB in 3s (3882 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 The following packages will be upgraded: apt apt-transport-https bash binutils cpp-5 g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers initscripts libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libcc1-0 libgcc-5-dev libgcc1 libgcrypt20 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libperl5.22 libpng12-0 libroken18-heimdal libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libwind0-heimdal linux-libc-dev make optipng perl perl-base perl-modules-5.22 policyrcd-script-zg2 sed systemd systemd-sysv sysv-rc sysvinit-utils tzdata 60 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 90.3 MB of archives. After this operation, 217 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bash ppc64el 4.3-14ubuntu2 [616 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main ppc64el grep ppc64el 2.25-1 [145 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main ppc64el hostname ppc64el 3.17ubuntu1 [11.9 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libperl5.22 ppc64el 5.22.1-10 [3226 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el perl ppc64el 5.22.1-10 [237 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el perl-base ppc64el 5.22.1-10 [1194 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el perl-modules-5.22 all 5.22.1-10 [2640 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el init-system-helpers all 1.31ubuntu1 [31.9 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el init ppc64el 1.31ubuntu1 [4576 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el sed ppc64el 4.2.2-7.1 [147 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gcc-6-base ppc64el 6.0.1-2ubuntu13 [15.8 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgcc1 ppc64el 1:6.0.1-2ubuntu13 [27.4 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libstdc++6 ppc64el 6.0.1-2ubuntu13 [417 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libapt-pkg5.0 ppc64el 1.2.11 [741 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el apt ppc64el 1.2.11 [1069 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main ppc64el sysvinit-utils ppc64el 2.88dsf-59.3ubuntu4 [22.2 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main ppc64el sysv-rc all 2.88dsf-59.3ubuntu4 [18.2 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main ppc64el initscripts ppc64el 2.88dsf-59.3ubuntu4 [24.5 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libselinux1 ppc64el 2.5-1 [64.4 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libsystemd0 ppc64el 229-5ubuntu1 [205 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el systemd ppc64el 229-5ubuntu1 [3692 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el systemd-sysv ppc64el 229-5ubuntu1 [17.7 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libgcrypt20 ppc64el 1.7.0-2 [419 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsepol1 ppc64el 2.5-1 [201 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libsemanage-common all 2.4-3build2 [6558 B] Get:26 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libsemanage1 ppc64el 2.4-3build2 [72.9 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libudev1 ppc64el 229-5ubuntu1 [57.7 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main ppc64el tzdata all 2016d-2 [168 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main ppc64el g++-5 ppc64el 5.3.1-16ubuntu2 [30.2 MB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gcc-5 ppc64el 5.3.1-16ubuntu2 [8629 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main ppc64el cpp-5 ppc64el 5.3.1-16ubuntu2 [28.1 MB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcc1-0 ppc64el 6.0.1-2ubuntu13 [30.7 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main ppc64el binutils ppc64el 2.26-8ubuntu3 [2771 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgomp1 ppc64el 6.0.1-2ubuntu13 [66.9 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libitm1 ppc64el 6.0.1-2ubuntu13 [28.2 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libatomic1 ppc64el 6.0.1-2ubuntu13 [8222 B] Get:37 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libasan2 ppc64el 5.3.1-16ubuntu2 [237 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libubsan0 ppc64el 6.0.1-2ubuntu13 [103 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libstdc++-5-dev ppc64el 5.3.1-16ubuntu2 [1399 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgcc-5-dev ppc64el 5.3.1-16ubuntu2 [596 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gcc-5-base ppc64el 5.3.1-16ubuntu2 [17.2 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libpng12-0 ppc64el 1.2.54-6ubuntu1 [120 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libslang2 ppc64el 2.3.0-2.3ubuntu1 [376 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libtasn1-6 ppc64el 4.8-1 [42.8 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el apt-transport-https ppc64el 1.2.11 [30.1 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libroken18-heimdal ppc64el 1.7~git20160418+dfsg-3 [39.4 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libasn1-8-heimdal ppc64el 1.7~git20160418+dfsg-3 [138 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libheimbase1-heimdal ppc64el 1.7~git20160418+dfsg-3 [28.7 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libhcrypto4-heimdal ppc64el 1.7~git20160418+dfsg-3 [97.4 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libwind0-heimdal ppc64el 1.7~git20160418+dfsg-3 [47.9 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libhx509-5-heimdal ppc64el 1.7~git20160418+dfsg-3 [102 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libkrb5-26-heimdal ppc64el 1.7~git20160418+dfsg-3 [190 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libheimntlm0-heimdal ppc64el 1.7~git20160418+dfsg-3 [15.6 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libgssapi3-heimdal ppc64el 1.7~git20160418+dfsg-3 [86.9 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libsasl2-modules-db ppc64el 2.1.26.dfsg1-15 [14.3 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libsasl2-2 ppc64el 2.1.26.dfsg1-15 [47.2 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libpng16-16 ppc64el 1.6.21-4 [186 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el linux-libc-dev ppc64el 4.4.0-22.38 [830 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el make ppc64el 4.1-9 [153 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main ppc64el optipng ppc64el 0.7.6-1build1 [84.4 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main ppc64el policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 90.3 MB in 2s (37.6 MB/s) (Reading database ... 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Exiting. Operation failed: No such file or directory (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12020 files and directories currently installed.) Preparing to unpack .../systemd-sysv_229-5ubuntu1_ppc64el.deb ... Unpacking systemd-sysv (229-5ubuntu1) over (229-4ubuntu4) ... Setting up systemd-sysv (229-5ubuntu1) ... (Reading database ... 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Unpacking apt-transport-https (1.2.11) over (1.2.10ubuntu1) ... Preparing to unpack .../libroken18-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libroken18-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libasn1-8-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libasn1-8-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libheimbase1-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libheimbase1-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libhcrypto4-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libhcrypto4-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libwind0-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libwind0-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libhx509-5-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libhx509-5-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libkrb5-26-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libkrb5-26-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libheimntlm0-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libheimntlm0-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libgssapi3-heimdal_1.7~git20160418+dfsg-3_ppc64el.deb ... Unpacking libgssapi3-heimdal:ppc64el (1.7~git20160418+dfsg-3) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-15_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-15_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Selecting previously unselected package libpng16-16:ppc64el. Preparing to unpack .../libpng16-16_1.6.21-4_ppc64el.deb ... Unpacking libpng16-16:ppc64el (1.6.21-4) ... Preparing to unpack .../linux-libc-dev_4.4.0-22.38_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (4.4.0-22.38) over (4.4.0-21.37) ... Preparing to unpack .../make_4.1-9_ppc64el.deb ... Unpacking make (4.1-9) over (4.1-6) ... Preparing to unpack .../optipng_0.7.6-1build1_ppc64el.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Preparing to unpack .../policyrcd-script-zg2_0.1-3_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3) over (0.1-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up perl-modules-5.22 (5.22.1-10) ... Setting up libperl5.22:ppc64el (5.22.1-10) ... Setting up perl (5.22.1-10) ... Setting up sysv-rc (2.88dsf-59.3ubuntu4) ... Setting up initscripts (2.88dsf-59.3ubuntu4) ... Setting up tzdata (2016d-2) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Apr 27 06:45:53 UTC 2016. Universal Time is now: Wed Apr 27 06:45:53 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up gcc-5-base:ppc64el (5.3.1-16ubuntu2) ... Setting up cpp-5 (5.3.1-16ubuntu2) ... Setting up libcc1-0:ppc64el (6.0.1-2ubuntu13) ... Setting up binutils (2.26-8ubuntu3) ... Setting up libgomp1:ppc64el (6.0.1-2ubuntu13) ... Setting up libitm1:ppc64el (6.0.1-2ubuntu13) ... Setting up libatomic1:ppc64el (6.0.1-2ubuntu13) ... Setting up libasan2:ppc64el (5.3.1-16ubuntu2) ... Setting up libubsan0:ppc64el (6.0.1-2ubuntu13) ... Setting up libgcc-5-dev:ppc64el (5.3.1-16ubuntu2) ... Setting up gcc-5 (5.3.1-16ubuntu2) ... Setting up libstdc++-5-dev:ppc64el (5.3.1-16ubuntu2) ... Setting up g++-5 (5.3.1-16ubuntu2) ... Setting up libpng12-0:ppc64el (1.2.54-6ubuntu1) ... Setting up libslang2:ppc64el (2.3.0-2.3ubuntu1) ... Setting up libtasn1-6:ppc64el (4.8-1) ... Setting up apt-transport-https (1.2.11) ... Setting up libroken18-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libasn1-8-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libheimbase1-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libhcrypto4-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libwind0-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libhx509-5-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libkrb5-26-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libheimntlm0-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libgssapi3-heimdal:ppc64el (1.7~git20160418+dfsg-3) ... Setting up libsasl2-modules-db:ppc64el (2.1.26.dfsg1-15) ... Setting up libsasl2-2:ppc64el (2.1.26.dfsg1-15) ... Setting up libpng16-16:ppc64el (1.6.21-4) ... Setting up linux-libc-dev:ppc64el (4.4.0-22.38) ... Setting up make (4.1-9) ... Setting up optipng (0.7.6-1build1) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9646838', 'ppc64el', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'rna-star_2.5.1b+dfsg-1.dsc'] Initiating build PACKAGEBUILD-9646838 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.2.0-35-generic #40-Ubuntu SMP Tue Mar 15 23:09:41 UTC 2016 ppc64le sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-ppc64el-018.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ rna-star 2.5.1b+dfsg-1 (ppc64el) 27 Apr 2016 06:45 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: rna-star Version: 2.5.1b+dfsg-1 Source Version: 2.5.1b+dfsg-1 Distribution: yakkety-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/rna-star-VnIGFz/rna-star-2.5.1b+dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/rna-star-VnIGFz' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9646838/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── rna-star_2.5.1b+dfsg-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-OaYyF_/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-OaYyF_/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-OaYyF_/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-OaYyF_/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-OaYyF_/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-OaYyF_/apt_archive ./ Packages [526 B] Fetched 2853 B in 0s (182 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-OaYyF_/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-OaYyF_/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libhts-dev, vim-common, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libhts-dev, vim-common, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-rna-star-dummy' in '/«BUILDDIR»/resolver-swRyir/apt_archive/sbuild-build-depends-rna-star-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-swRyir/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-swRyir/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-swRyir/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-swRyir/apt_archive ./ Sources [440 B] Get:5 copy:/«BUILDDIR»/resolver-swRyir/apt_archive ./ Packages [708 B] Fetched 3267 B in 0s (222 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-swRyir/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install rna-star build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf vim-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl vim-gnome-py2 | vim-gtk-py2 | vim-gtk3-py2 | vim-athena-py2 | vim-nox-py2 Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl vim | vim-gnome | vim-gtk | vim-gtk3 | vim-athena | vim-nox | vim-tiny The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-rna-star-dummy vim-common zlib1g-dev 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 17.2 MB of archives. After this operation, 70.5 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-rna-star-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-swRyir/apt_archive ./ sbuild-build-depends-rna-star-dummy 0.invalid.0 [950 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main ppc64el groff-base ppc64el 1.22.3-7 [1370 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bsdmainutils ppc64el 9.0.6ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libpipeline1 ppc64el 1.4.1-2 [24.1 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main ppc64el man-db ppc64el 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libunistring0 ppc64el 0.9.3-5.2ubuntu1 [269 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libmagic1 ppc64el 1:5.25-2ubuntu1 [220 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main ppc64el file ppc64el 1:5.25-2ubuntu1 [21.7 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main ppc64el vim-common ppc64el 2:7.4.1689-3ubuntu2 [104 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libasprintf0v5 ppc64el 0.19.7-2ubuntu3 [6604 B] Get:11 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gettext-base ppc64el 0.19.7-2ubuntu3 [46.8 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libglib2.0-0 ppc64el 2.48.0-1ubuntu4 [1043 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libicu57 ppc64el 57.1-1 [7781 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libxml2 ppc64el 2.9.3+dfsg1-1build1 [610 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsigsegv2 ppc64el 2.10-5 [14.2 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main ppc64el m4 ppc64el 1.4.17-5 [198 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el autoconf all 2.69-10 [321 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main ppc64el autotools-dev all 20150820.1 [39.8 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main ppc64el automake all 1:1.15-4ubuntu1 [510 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main ppc64el autopoint all 0.19.7-2ubuntu3 [406 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcroco3 ppc64el 0.6.11-1 [75.6 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gettext ppc64el 0.19.7-2ubuntu3 [1100 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main ppc64el po-debconf all 1.0.19 [234 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libarchive-zip-perl all 1.57-1 [84.0 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libfile-stripnondeterminism-perl all 0.016-1 [11.0 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dh-strip-nondeterminism all 0.016-1 [4858 B] Get:29 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtool all 2.4.6-0.1 [193 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dh-autoreconf all 12 [15.8 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main ppc64el debhelper all 9.20160403ubuntu1 [711 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libhts1 ppc64el 1.2.1-2ubuntu1 [227 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libhts-dev ppc64el 1.2.1-2ubuntu1 [296 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main ppc64el zlib1g-dev ppc64el 1:1.2.8.dfsg-2ubuntu4 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.2 MB in 0s (29.1 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12029 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_ppc64el.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_ppc64el.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../libpipeline1_1.4.1-2_ppc64el.deb ... 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Unpacking zlib1g-dev:ppc64el (1:1.2.8.dfsg-2ubuntu4) ... Selecting previously unselected package sbuild-build-depends-rna-star-dummy. Preparing to unpack .../sbuild-build-depends-rna-star-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-rna-star-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:ppc64el (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Setting up libmagic1:ppc64el (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up vim-common (2:7.4.1689-3ubuntu2) ... Setting up libasprintf0v5:ppc64el (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:ppc64el (2.48.0-1ubuntu4) ... No schema files found: doing nothing. Setting up libicu57:ppc64el (57.1-1) ... Setting up libxml2:ppc64el (2.9.3+dfsg1-1build1) ... Setting up libsigsegv2:ppc64el (2.10-5) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-10) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libcroco3:ppc64el (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.57-1) ... Setting up libfile-stripnondeterminism-perl (0.016-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up libhts1:ppc64el (1.2.1-2ubuntu1) ... Setting up libhts-dev:ppc64el (1.2.1-2ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.8.dfsg-2ubuntu4) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up sbuild-build-depends-rna-star-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.016-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.2.0-35-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.26-8ubuntu3 dpkg-dev_1.18.4ubuntu1 g++-5_5.3.1-16ubuntu2 gcc-5_5.3.1-16ubuntu2 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-16ubuntu2 libstdc++6_6.0.1-2ubuntu13 linux-libc-dev_4.4.0-22.38 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.11 apt-transport-https_1.2.11 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20150820.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 binutils_2.26-8ubuntu3 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-16ubuntu2 dash_0.5.8-2.1ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20160403ubuntu1 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu10 dpkg_1.18.4ubuntu1 dpkg-dev_1.18.4ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-16ubuntu2 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-16ubuntu2 gcc-5-base_5.3.1-16ubuntu2 gcc-6-base_6.0.1-2ubuntu13 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.17ubuntu1 init_1.31ubuntu1 init-system-helpers_1.31ubuntu1 initscripts_2.88dsf-59.3ubuntu4 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.2.11 libarchive-zip-perl_1.57-1 libasan2_5.3.1-16ubuntu2 libasn1-8-heimdal_1.7~git20160418+dfsg-3 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.0.1-2ubuntu13 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.27.1-6ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_6.0.1-2ubuntu13 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu10 libdpkg-perl_1.18.4ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-6ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgcc-5-dev_5.3.1-16ubuntu2 libgcc1_1:6.0.1-2ubuntu13 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.0-1ubuntu4 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.10-4ubuntu1 libgomp1_6.0.1-2ubuntu13 libgpg-error0_1.21-2ubuntu1 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20160418+dfsg-3 libhcrypto4-heimdal_1.7~git20160418+dfsg-3 libheimbase1-heimdal_1.7~git20160418+dfsg-3 libheimntlm0-heimdal_1.7~git20160418+dfsg-3 libhogweed4_3.2-1 libhts-dev_1.2.1-2ubuntu1 libhts1_1.2.1-2ubuntu1 libhx509-5-heimdal_1.7~git20160418+dfsg-3 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libisl15_0.16.1-1 libitm1_6.0.1-2ubuntu13 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20160418+dfsg-3 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.1-10 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-4 libprocps4_2:3.3.10-4ubuntu2 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160418+dfsg-3 librtmp1_2.4+20151223.gitfa8646d-1build1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.5-1 libsemanage-common_2.4-3build2 libsemanage1_2.4-3build2 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.27.1-6ubuntu3 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-16ubuntu2 libstdc++6_6.0.1-2ubuntu13 libsystemd0_229-5ubuntu1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.0.1-2ubuntu13 libudev1_229-5ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libwind0-heimdal_1.7~git20160418+dfsg-3 libxml2_2.9.3+dfsg1-1build1 linux-libc-dev_4.4.0-22.38 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.1-10 perl-base_5.22.1-10 perl-modules-5.22_5.22.1-10 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.10-4ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rna-star-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_229-5ubuntu1 systemd-sysv_229-5ubuntu1 sysv-rc_2.88dsf-59.3ubuntu4 sysvinit-utils_2.88dsf-59.3ubuntu4 tar_1.28-2.1 tzdata_2016d-2 ubuntu-keyring_2012.05.19 util-linux_2.27.1-6ubuntu3 vim-common_2:7.4.1689-3ubuntu2 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Tue Feb 23 18:16:52 2016 UTC using RSA key ID C020EED1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./rna-star_2.5.1b+dfsg-1.dsc dpkg-source: info: extracting rna-star in rna-star-2.5.1b+dfsg dpkg-source: info: unpacking rna-star_2.5.1b+dfsg.orig.tar.gz dpkg-source: info: unpacking rna-star_2.5.1b+dfsg-1.debian.tar.xz dpkg-source: info: applying donotuse_own_htslib.patch dpkg-source: info: applying compilationstuff.patch dpkg-source: info: applying mips_shm_noreserve.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/rna-star-2.5.1b+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/rna-star-2.5.1b+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package rna-star dpkg-buildpackage: source version 2.5.1b+dfsg-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build rna-star-2.5.1b+dfsg dpkg-buildpackage: host architecture ppc64el fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«BUILDDIR»/rna-star-2.5.1b+dfsg' cd source && /usr/bin/make clean make[2]: Entering directory '/«BUILDDIR»/rna-star-2.5.1b+dfsg/source' rm -f *.o STAR STARstatic STARlong Depend.list make[2]: Leaving directory '/«BUILDDIR»/rna-star-2.5.1b+dfsg/source' rm -f source/parametersDefault.xxd make[1]: Leaving directory '/«BUILDDIR»/rna-star-2.5.1b+dfsg' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/«BUILDDIR»/rna-star-2.5.1b+dfsg' cd source && /usr/bin/make CCFLAGS_common_add="-flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" CCFLAGS="-flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" LDFLAGS_add="-Wl,-Bsymbolic-functions -Wl,-z,relro" make[2]: Entering directory '/«BUILDDIR»/rna-star-2.5.1b+dfsg/source' Makefile:89: Depend.list: No such file or directory xxd -i parametersDefault > parametersDefault.xxd echo sjdbLoadFromFiles.cpp blocksOverlap.cpp ReadAlign_quantTranscriptome.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp PackedArray.cpp ReadAlign_createExtendWindowsWithAlign.cpp readLoad.cpp sjdbInsertJunctions.cpp sjdbPrepare.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp ReadAlign_stitchWindowSeeds.cpp Transcriptome.cpp OutSJ.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp Quantifications.cpp sjdbLoadFromStream.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp genomeSAindex.cpp signalFromBAM.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp GlobalVariables.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp binarySearch2.cpp ThreadControl.cpp Genome_insertSequences.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp BAMoutput.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp stringSubstituteAll.cpp Transcriptome_geneCountsAddAlign.cpp sysRemoveDir.cpp ReadAlign_storeAligns.cpp bamRemoveDuplicates.cpp InOutStreams.cpp SharedMemory.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp SequenceFuns.cpp extendAlign.cpp BAMfunctions.cpp bam_cat.c sjdbLoadFromFiles.cpp blocksOverlap.cpp ReadAlign_quantTranscriptome.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp PackedArray.cpp ReadAlign_createExtendWindowsWithAlign.cpp readLoad.cpp sjdbInsertJunctions.cpp sjdbPrepare.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp ReadAlign_stitchWindowSeeds.cpp Transcriptome.cpp OutSJ.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp Quantifications.cpp sjdbLoadFromStream.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp genomeSAindex.cpp signalFromBAM.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp GlobalVariables.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp binarySearch2.cpp ThreadControl.cpp Genome_insertSequences.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp BAMoutput.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp stringSubstituteAll.cpp Transcriptome_geneCountsAddAlign.cpp sysRemoveDir.cpp ReadAlign_storeAligns.cpp bamRemoveDuplicates.cpp InOutStreams.cpp SharedMemory.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp SequenceFuns.cpp extendAlign.cpp BAMfunctions.cpp bam_cat.c /bin/rm -f ./Depend.list g++ -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:04 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -MM sjdbLoadFromFiles.cpp blocksOverlap.cpp ReadAlign_quantTranscriptome.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_mapOneRead.cpp ReadAlign_outputTranscriptSAM.cpp PackedArray.cpp ReadAlign_createExtendWindowsWithAlign.cpp readLoad.cpp sjdbInsertJunctions.cpp sjdbPrepare.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp ReadAlign_stitchWindowSeeds.cpp Transcriptome.cpp OutSJ.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp Quantifications.cpp sjdbLoadFromStream.cpp ReadAlignChunk.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp genomeSAindex.cpp signalFromBAM.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp GlobalVariables.cpp Parameters.cpp sjSplitAlign.cpp ReadAlign_chimericDetection.cpp outputSJ.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp binarySearch2.cpp ThreadControl.cpp Genome_insertSequences.cpp Genome.cpp BAMbinSortUnmapped.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp BAMoutput.cpp genomeParametersWrite.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp stringSubstituteAll.cpp Transcriptome_geneCountsAddAlign.cpp sysRemoveDir.cpp ReadAlign_storeAligns.cpp bamRemoveDuplicates.cpp InOutStreams.cpp SharedMemory.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp SequenceFuns.cpp extendAlign.cpp BAMfunctions.cpp bam_cat.c parametersDefault.xxd >> Depend.list g++: warning: parametersDefault.xxd: linker input file unused because linking not done g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' SharedMemory.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' PackedArray.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' SuffixArrayFuns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' STAR.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Parameters.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' InOutStreams.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' SequenceFuns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Genome.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Stats.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Transcript.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Transcript_alignScore.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_storeAligns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_stitchPieces.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_multMapSelect.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_mapOneRead.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' readLoad.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlignChunk.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlignChunk_processChunks.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlignChunk_mapChunk.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' OutSJ.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' outputSJ.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' blocksOverlap.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ThreadControl.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' sysRemoveDir.cpp sysRemoveDir.cpp:7:58: warning: unused parameter ‘sb’ [-Wunused-parameter] int removeFileOrDir(const char *fpath,const struct stat *sb, int typeflag, struct FTW *ftwbuf) { ^ sysRemoveDir.cpp:7:88: warning: unused parameter ‘ftwbuf’ [-Wunused-parameter] int removeFileOrDir(const char *fpath,const struct stat *sb, int typeflag, struct FTW *ftwbuf) { ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_maxMappableLength2strands.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' binarySearch2.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_outputAlignments.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_outputTranscriptSAM.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_outputTranscriptSJ.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_outputTranscriptCIGARp.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_createExtendWindowsWithAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_assignAlignToWindow.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_oneRead.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_stitchWindowSeeds.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_chimericDetection.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' stitchWindowAligns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' extendAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' stitchAlignToTranscript.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' alignSmithWaterman.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' genomeGenerate.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' genomeParametersWrite.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' genomeScanFastaFiles.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' genomeSAindex.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Genome_insertSequences.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' insertSeqSA.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' funCompareUintAndSuffixes.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' TimeFunctions.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ErrorWarning.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' loadGTF.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' streamFuns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' stringSubstituteAll.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Transcriptome.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Transcriptome_quantAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_quantTranscriptome.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Quantifications.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' Transcriptome_geneCountsAddAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' sjdbLoadFromFiles.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' sjdbLoadFromStream.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' sjdbPrepare.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' sjdbBuildIndex.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' sjdbInsertJunctions.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' mapThreadsSpawn.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' BAMoutput.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' BAMfunctions.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' ReadAlign_alignBAM.cpp ReadAlign_alignBAM.cpp: In instantiation of ‘int bamAttrArrayWriteInt(intType, const char*, char*, Parameters*) [with intType = long long unsigned int]’: ReadAlign_alignBAM.cpp:212:76: required from here ReadAlign_alignBAM.cpp:92:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (x >= -127) { ^ ReadAlign_alignBAM.cpp:94:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (x >= -32767) { ^ ReadAlign_alignBAM.cpp:98:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!(x>=-2147483647)) { ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' BAMbinSortByCoordinate.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' signalFromBAM.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' bamRemoveDuplicates.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' BAMbinSortUnmapped.cpp BAMbinSortUnmapped.cpp:5:78: warning: unused parameter ‘bgzfBAM’ [-Wunused-parameter] void BAMbinSortUnmapped(uint32 iBin, uint nThreads, string dirBAMsort, BGZF *bgzfBAM, Parameters *P) { ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -Wall -Wextra -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' bam_cat.c g++ -o STAR -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE="Wed Apr 27 06:46:08 UTC 2016 :/«BUILDDIR»/rna-star-2.5.1b+dfsg/source"' -flto -flto -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fstack-protector-strong -Wformat -Werror=format-security SharedMemory.o PackedArray.o SuffixArrayFuns.o STAR.o Parameters.o InOutStreams.o SequenceFuns.o Genome.o Stats.o Transcript.o Transcript_alignScore.o ReadAlign.o ReadAlign_storeAligns.o ReadAlign_stitchPieces.o ReadAlign_multMapSelect.o ReadAlign_mapOneRead.o readLoad.o ReadAlignChunk.o ReadAlignChunk_processChunks.o ReadAlignChunk_mapChunk.o OutSJ.o outputSJ.o blocksOverlap.o ThreadControl.o sysRemoveDir.o ReadAlign_maxMappableLength2strands.o binarySearch2.o ReadAlign_outputAlignments.o ReadAlign_outputTranscriptSAM.o ReadAlign_outputTranscriptSJ.o ReadAlign_outputTranscriptCIGARp.o ReadAlign_createExtendWindowsWithAlign.o ReadAlign_assignAlignToWindow.o ReadAlign_oneRead.o ReadAlign_stitchWindowSeeds.o ReadAlign_chimericDetection.o stitchWindowAligns.o extendAlign.o stitchAlignToTranscript.o alignSmithWaterman.o genomeGenerate.o genomeParametersWrite.o genomeScanFastaFiles.o genomeSAindex.o Genome_insertSequences.o insertSeqSA.o funCompareUintAndSuffixes.o TimeFunctions.o ErrorWarning.o loadGTF.o streamFuns.o stringSubstituteAll.o Transcriptome.o Transcriptome_quantAlign.o ReadAlign_quantTranscriptome.o Quantifications.o Transcriptome_geneCountsAddAlign.o sjdbLoadFromFiles.o sjdbLoadFromStream.o sjdbPrepare.o sjdbBuildIndex.o sjdbInsertJunctions.o mapThreadsSpawn.o Parameters_openReadsFiles.cpp Parameters_closeReadsFiles.cpp BAMoutput.o BAMfunctions.o ReadAlign_alignBAM.o BAMbinSortByCoordinate.o signalFromBAM.o bamRemoveDuplicates.o BAMbinSortUnmapped.o bam_cat.o GlobalVariables.cpp -pthread -Bstatic -lhts -Bdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro Parameters_openReadsFiles.cpp: In member function ‘void Parameters::openReadsFiles()’: Parameters_openReadsFiles.cpp:58:97: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("ls -lL " + file1 + " > "+ outFileTmp+"/readFilesIn.info 2>&1").c_str()); ^ Parameters_openReadsFiles.cpp: In member function ‘openReadsFiles’: Parameters_openReadsFiles.cpp:30:20: warning: variable ‘imate’ might be clobbered by ‘longjmp’ or ‘vfork’ [-Wclobbered] for (uint imate=0;imate= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform ppc64el: rna-star dh_gencontrol debug symbol wrapper: packages to act on: rna-star dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package rna-star (pkgdir debian/rna-star, ddeb package dir debian/rna-star-dbgsym) dh_gencontrol debug symbol wrapper: building rna-star-dbgsym_2.5.1b+dfsg-1_ppc64el.ddeb dpkg-deb: building package 'rna-star-dbgsym' in '../rna-star-dbgsym_2.5.1b+dfsg-1_ppc64el.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile rna-star-dbgsym_2.5.1b+dfsg-1_ppc64el.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 129 pkgstriptranslations: processing rna-star (in debian/rna-star); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/rna-star/DEBIAN/control, package rna-star, directory debian/rna-star pkgstripfiles: Running PNG optimization (using 4 cpus) for package rna-star ... pkgstripfiles: No PNG files. dpkg-deb: building package 'rna-star' in '../rna-star_2.5.1b+dfsg-1_ppc64el.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../rna-star_2.5.1b+dfsg-1_ppc64el.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build rna-star-2.5.1b+dfsg dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160427-0647 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ rna-star_2.5.1b+dfsg-1_ppc64el.changes: ─────────────────────────────────────── Format: 1.8 Date: Tue, 23 Feb 2016 17:36:18 +0100 Source: rna-star Binary: rna-star Architecture: ppc64el Version: 2.5.1b+dfsg-1 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steffen Moeller Description: rna-star - ultrafast universal RNA-seq aligner Changes: rna-star (2.5.1b+dfsg-1) unstable; urgency=medium . * New upstream version. * Adjusted debian/watch to accept missing "STAR_" prefix. * Bumped policy compliance to 3.9.7. * Added debian/upstream/edam file. * Moved hunk from compilationstuff.patch to donotuse_own_htslib.patch to collect upstream-independent bits source/Makefile. * Introduced short reference on patches in debian/README.source. Checksums-Sha1: 2d86017c4e9b0d854701b39806ae3b3297e402f7 755506 rna-star-dbgsym_2.5.1b+dfsg-1_ppc64el.ddeb 1297c084f46498393e6bd00e17641a5cf55b266f 354618 rna-star_2.5.1b+dfsg-1_ppc64el.deb Checksums-Sha256: 213a4c3d2cc7dffc1614e0d6a9ddd8d07cc8449cdeed2f106c8c0b6d4425a86a 755506 rna-star-dbgsym_2.5.1b+dfsg-1_ppc64el.ddeb a99a4c28c8f39288363f888a6bd13440ad77c2203e0b4b686224e9747e570e12 354618 rna-star_2.5.1b+dfsg-1_ppc64el.deb Files: 4373f095fa253d298b7f72e89bb82876 755506 science extra rna-star-dbgsym_2.5.1b+dfsg-1_ppc64el.ddeb f773b253c8feee865900cbfcd1f59fb8 354618 science optional rna-star_2.5.1b+dfsg-1_ppc64el.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ rna-star_2.5.1b+dfsg-1_ppc64el.deb ────────────────────────────────── new debian package, version 2.0. size 354618 bytes: control archive=1342 bytes. 1454 bytes, 25 lines control 602 bytes, 9 lines md5sums Package: rna-star Version: 2.5.1b+dfsg-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 813 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.4.4), libgomp1 (>= 4.9), libhts1 (>= 1.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://code.google.com/p/rna-star/ Description: ultrafast universal RNA-seq aligner Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy. drwxr-xr-x root/root 0 2016-04-27 06:47 ./ drwxr-xr-x root/root 0 2016-04-27 06:47 ./usr/ drwxr-xr-x root/root 0 2016-04-27 06:47 ./usr/bin/ -rwxr-xr-x root/root 554912 2016-04-27 06:47 ./usr/bin/STAR drwxr-xr-x root/root 0 2016-04-27 06:47 ./usr/share/ drwxr-xr-x root/root 0 2016-04-27 06:47 ./usr/share/doc-base/ -rw-r--r-- root/root 1179 2016-02-23 15:02 ./usr/share/doc-base/rna-star drwxr-xr-x root/root 0 2016-04-27 06:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-04-27 06:47 ./usr/share/doc/rna-star/ -rw-r--r-- root/root 220 2016-02-23 15:02 ./usr/share/doc/rna-star/README.Debian -rw-r--r-- root/root 3193 2016-01-22 20:18 ./usr/share/doc/rna-star/README.md -rw-r--r-- root/root 2118 2016-01-22 20:18 ./usr/share/doc/rna-star/RELEASEnotes.md.gz -rw-r--r-- root/root 251507 2016-01-22 20:18 ./usr/share/doc/rna-star/STARmanual.pdf -rw-r--r-- root/root 653 2016-02-23 17:34 ./usr/share/doc/rna-star/changelog.Debian.gz -rw-r--r-- root/root 2444 2016-02-23 15:02 ./usr/share/doc/rna-star/copyright drwxr-xr-x root/root 0 2016-04-27 06:47 ./usr/share/man/ drwxr-xr-x root/root 0 2016-04-27 06:47 ./usr/share/man/man1/ -rw-r--r-- root/root 814 2016-04-27 06:47 ./usr/share/man/man1/STAR.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: ppc64el Build-Space: 20120 Build-Time: 74 Distribution: yakkety-proposed Host Architecture: ppc64el Install-Time: 9 Job: rna-star_2.5.1b+dfsg-1.dsc Machine Architecture: ppc64el Package: rna-star Package-Time: 83 Source-Version: 2.5.1b+dfsg-1 Space: 20120 Status: successful Version: 2.5.1b+dfsg-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160427-0647 Build needed 00:01:23, 20120k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9646838'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9646838/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9646838'] Unmounting chroot for build PACKAGEBUILD-9646838... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9646838'] Removing build PACKAGEBUILD-9646838