RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-004 4.2.0-36-generic #42-Ubuntu SMP Thu May 12 22:02:52 UTC 2016 ppc64le Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2+ubuntu15.10.3 bzr-builder_0.7.3-0ubuntu1 bzr_2.6.0+bzr6602-2ubuntu4 git_1:2.5.0-1ubuntu0.2 dpkg-dev_1.18.2ubuntu5.1 python-debian_0.1.27ubuntu1 qemu-user-static_1:2.3+dfsg-5ubuntu9.4. Syncing the system clock with the buildd NTP service... 22 May 23:14:19 ntpdate[2806]: adjust time server 10.211.37.1 offset 0.000407 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9789455', '/home/buildd/filecache-default/8c9692db9ad0609beb9d2138f14eb797fb0ebd7a'] Unpacking chroot for build PACKAGEBUILD-9789455 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9789455'] Mounting chroot for build PACKAGEBUILD-9789455 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9789455', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9789455 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9789455', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-9789455 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main ppc64el Packages [1132 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [568 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el Packages [7457 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4436 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main ppc64el Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe ppc64el Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main ppc64el Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe ppc64el Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el Packages [89.3 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [50.6 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe ppc64el Packages [286 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [189 kB] Fetched 14.7 MB in 7s (1977 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 libprocps5 The following packages will be upgraded: apt apt-transport-https bash binutils bsdutils bzip2 cpp-5 debconf dmsetup dpkg dpkg-dev g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers initscripts libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libblkid1 libbz2-1.0 libcap2 libcap2-bin libcc1-0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libldap-2.4-2 libmount1 libperl5.22 libpng12-0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev lsb-base make mount optipng perl perl-base perl-modules-5.22 policyrcd-script-zg2 procps sed systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata ubuntu-keyring util-linux zlib1g 88 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 96.1 MB of archives. After this operation, 219 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bash ppc64el 4.3-14ubuntu2 [616 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el bsdutils ppc64el 1:2.28-5ubuntu1 [54.3 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dpkg ppc64el 1.18.7ubuntu1 [2158 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main ppc64el grep ppc64el 2.25-1 [145 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main ppc64el hostname ppc64el 3.17ubuntu1 [11.9 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main ppc64el perl-modules-5.22 all 5.22.2-1 [2642 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libperl5.22 ppc64el 5.22.2-1 [3203 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main ppc64el perl ppc64el 5.22.2-1 [237 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main ppc64el perl-base ppc64el 5.22.2-1 [1202 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bzip2 ppc64el 1.0.6-8build1 [35.6 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libbz2-1.0 ppc64el 1.0.6-8build1 [40.4 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main ppc64el zlib1g ppc64el 1:1.2.8.dfsg-2ubuntu5 [51.1 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el init-system-helpers all 1.33ubuntu2 [31.9 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el init ppc64el 1.33ubuntu2 [4346 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libsmartcols1 ppc64el 2.28-5ubuntu1 [59.6 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libuuid1 ppc64el 2.28-5ubuntu1 [15.5 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libblkid1 ppc64el 2.28-5ubuntu1 [98.4 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libfdisk1 ppc64el 2.28-5ubuntu1 [128 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el sysv-rc all 2.88dsf-59.4ubuntu1 [18.2 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el initscripts ppc64el 2.88dsf-59.4ubuntu1 [23.9 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el util-linux ppc64el 2.28-5ubuntu1 [862 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el sysvinit-utils ppc64el 2.88dsf-59.4ubuntu1 [22.2 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main ppc64el debconf all 1.5.59ubuntu1 [136 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgpg-error0 ppc64el 1.22-2 [36.7 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgcrypt20 ppc64el 1.7.0-2 [419 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsystemd0 ppc64el 229-6ubuntu1 [204 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main ppc64el systemd ppc64el 229-6ubuntu1 [3665 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libcap2 ppc64el 1:2.25-1 [14.1 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libselinux1 ppc64el 2.5-3 [64.8 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libmount1 ppc64el 2.28-5ubuntu1 [105 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libcap2-bin ppc64el 1:2.25-1 [20.9 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main ppc64el lsb-base all 9.20160110ubuntu1 [13.7 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el mount ppc64el 2.28-5ubuntu1 [120 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main ppc64el sed ppc64el 4.2.2-7.1 [147 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main ppc64el tar ppc64el 1.29-1 [234 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el gcc-6-base ppc64el 6.1.1-4ubuntu11 [17.0 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libgcc1 ppc64el 1:6.1.1-4ubuntu11 [27.3 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libstdc++6 ppc64el 6.1.1-4ubuntu11 [417 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libapt-pkg5.0 ppc64el 1.3~exp1 [747 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main ppc64el ubuntu-keyring all 2016.05.13 [16.5 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main ppc64el apt ppc64el 1.3~exp1 [1067 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main ppc64el systemd-sysv ppc64el 229-6ubuntu1 [17.6 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libudev1 ppc64el 229-6ubuntu1 [57.5 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.124-1ubuntu1 [136 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsepol1 ppc64el 2.5-1 [201 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsemanage-common all 2.5-1 [6800 B] Get:47 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsemanage1 ppc64el 2.5-1 [73.9 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libusb-0.1-4 ppc64el 2:0.1.12-30 [16.1 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libprocps5 ppc64el 2:3.3.11-3ubuntu1 [29.6 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el procps ppc64el 2:3.3.11-3ubuntu1 [224 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main ppc64el tzdata all 2016d-2 [168 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtasn1-6 ppc64el 4.8-1 [42.8 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libgnutls30 ppc64el 3.4.11-4ubuntu1 [466 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libslang2 ppc64el 2.3.0-2.3ubuntu1 [376 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main ppc64el apt-transport-https ppc64el 1.3~exp1 [30.5 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libroken18-heimdal ppc64el 1.7~git20160515+dfsg-1 [39.5 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libasn1-8-heimdal ppc64el 1.7~git20160515+dfsg-1 [138 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libheimbase1-heimdal ppc64el 1.7~git20160515+dfsg-1 [28.8 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libhcrypto4-heimdal ppc64el 1.7~git20160515+dfsg-1 [97.1 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libwind0-heimdal ppc64el 1.7~git20160515+dfsg-1 [48.1 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libhx509-5-heimdal ppc64el 1.7~git20160515+dfsg-1 [102 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libkrb5-26-heimdal ppc64el 1.7~git20160515+dfsg-1 [191 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libheimntlm0-heimdal ppc64el 1.7~git20160515+dfsg-1 [15.7 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libgssapi3-heimdal ppc64el 1.7~git20160515+dfsg-1 [86.7 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsasl2-modules-db ppc64el 2.1.26.dfsg1-15 [14.3 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsasl2-2 ppc64el 2.1.26.dfsg1-15 [47.2 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libldap-2.4-2 ppc64el 2.4.42+dfsg-2ubuntu4 [151 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libpng16-16 ppc64el 1.6.21-5 [186 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-1 [51.0 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main ppc64el binutils ppc64el 2.26-9ubuntu1 [2319 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libgomp1 ppc64el 6.1.1-4ubuntu11 [67.0 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libitm1 ppc64el 6.1.1-4ubuntu11 [28.2 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libatomic1 ppc64el 6.1.1-4ubuntu11 [8200 B] Get:74 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libasan2 ppc64el 5.3.1-20ubuntu1 [233 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libubsan0 ppc64el 6.1.1-4ubuntu11 [103 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el g++-5 ppc64el 5.3.1-20ubuntu1 [30.3 MB] Get:77 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el gcc-5 ppc64el 5.3.1-20ubuntu1 [8600 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libstdc++-5-dev ppc64el 5.3.1-20ubuntu1 [1394 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libgcc-5-dev ppc64el 5.3.1-20ubuntu1 [590 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libcc1-0 ppc64el 6.1.1-4ubuntu11 [30.6 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el cpp-5 ppc64el 5.3.1-20ubuntu1 [28.1 MB] Get:82 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el gcc-5-base ppc64el 5.3.1-20ubuntu1 [16.9 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el dmsetup ppc64el 2:1.02.124-1ubuntu1 [69.0 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dpkg-dev all 1.18.7ubuntu1 [666 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libdpkg-perl all 1.18.7ubuntu1 [202 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main ppc64el make ppc64el 4.1-9 [153 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libpng12-0 ppc64el 1.2.54-6ubuntu1 [120 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el linux-libc-dev ppc64el 4.4.0-23.41 [830 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main ppc64el optipng ppc64el 0.7.6-1build1 [84.4 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main ppc64el policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.1 MB in 10s (9179 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12023 files and directories currently installed.) Preparing to unpack .../bash_4.3-14ubuntu2_ppc64el.deb ... Unpacking bash (4.3-14ubuntu2) over (4.3-14ubuntu1) ... Setting up bash (4.3-14ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libbz2-1.0:ppc64el (1.0.6-8build1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up zlib1g:ppc64el (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.33ubuntu2_all.deb ... Unpacking init-system-helpers (1.33ubuntu2) over (1.29ubuntu1) ... Setting up init-system-helpers (1.33ubuntu2) ... (Reading database ... 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Unpacking sysvinit-utils (2.88dsf-59.4ubuntu1) over (2.88dsf-59.3ubuntu2) ... Preparing to unpack .../util-linux_2.28-5ubuntu1_ppc64el.deb ... Unpacking util-linux (2.28-5ubuntu1) over (2.27.1-6ubuntu3) ... Setting up util-linux (2.28-5ubuntu1) ... Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12039 files and directories currently installed.) Preparing to unpack .../debconf_1.5.59ubuntu1_all.deb ... Unpacking debconf (1.5.59ubuntu1) over (1.5.58ubuntu1) ... Setting up debconf (1.5.59ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12039 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.22-2_ppc64el.deb ... Unpacking libgpg-error0:ppc64el (1.22-2) over (1.21-2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgpg-error0:ppc64el (1.22-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12039 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.0-2_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.7.0-2) over (1.6.5-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcrypt20:ppc64el (1.7.0-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12039 files and directories currently installed.) Preparing to unpack .../libsystemd0_229-6ubuntu1_ppc64el.deb ... Unpacking libsystemd0:ppc64el (229-6ubuntu1) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsystemd0:ppc64el (229-6ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12039 files and directories currently installed.) Preparing to unpack .../systemd_229-6ubuntu1_ppc64el.deb ... Unpacking systemd (229-6ubuntu1) over (229-4ubuntu4) ... Setting up systemd (229-6ubuntu1) ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Operation failed: No such file or directory (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12038 files and directories currently installed.) Preparing to unpack .../libselinux1_2.5-3_ppc64el.deb ... Unpacking libselinux1:ppc64el (2.5-3) over (2.4-3build2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libselinux1:ppc64el (2.5-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12038 files and directories currently installed.) Preparing to unpack .../libmount1_2.28-5ubuntu1_ppc64el.deb ... Unpacking libmount1:ppc64el (2.28-5ubuntu1) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libmount1:ppc64el (2.28-5ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12038 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.25-1_ppc64el.deb ... Unpacking libcap2-bin (1:2.25-1) over (1:2.24-12) ... Setting up libcap2-bin (1:2.25-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.1.1-4ubuntu11_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:6.1.1-4ubuntu11) over (1:6.0.1-0ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcc1:ppc64el (1:6.1.1-4ubuntu11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.1.1-4ubuntu11_ppc64el.deb ... Unpacking libstdc++6:ppc64el (6.1.1-4ubuntu11) over (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libstdc++6:ppc64el (6.1.1-4ubuntu11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.3~exp1_ppc64el.deb ... Unpacking libapt-pkg5.0:ppc64el (1.3~exp1) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libapt-pkg5.0:ppc64el (1.3~exp1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.05.13_all.deb ... Unpacking ubuntu-keyring (2016.05.13) over (2012.05.19) ... Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../apt_1.3~exp1_ppc64el.deb ... Unpacking apt (1.3~exp1) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up apt (1.3~exp1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../systemd-sysv_229-6ubuntu1_ppc64el.deb ... Unpacking systemd-sysv (229-6ubuntu1) over (229-4ubuntu4) ... Setting up systemd-sysv (229-6ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libudev1_229-6ubuntu1_ppc64el.deb ... Unpacking libudev1:ppc64el (229-6ubuntu1) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libudev1:ppc64el (229-6ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.124-1ubuntu1_ppc64el.deb ... Unpacking libdevmapper1.02.1:ppc64el (2:1.02.124-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.124-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libsepol1_2.5-1_ppc64el.deb ... Unpacking libsepol1:ppc64el (2.5-1) over (2.4-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsepol1:ppc64el (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.5-1_all.deb ... Unpacking libsemanage-common (2.5-1) over (2.3-1build3) ... Setting up libsemanage-common (2.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.5-1_ppc64el.deb ... Unpacking libsemanage1:ppc64el (2.5-1) over (2.3-1build3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsemanage1:ppc64el (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12042 files and directories currently installed.) Preparing to unpack .../libprocps5_2%3a3.3.11-3ubuntu1_ppc64el.deb ... Unpacking libprocps5:ppc64el (2:3.3.11-3ubuntu1) ... Preparing to unpack .../procps_2%3a3.3.11-3ubuntu1_ppc64el.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.11-3ubuntu1) over (2:3.3.10-4ubuntu2) ... Preparing to unpack .../tzdata_2016d-2_all.deb ... Unpacking tzdata (2016d-2) over (2016d-0ubuntu0.16.04) ... Preparing to unpack .../libtasn1-6_4.8-1_ppc64el.deb ... Unpacking libtasn1-6:ppc64el (4.8-1) over (4.7-3) ... Preparing to unpack .../libgnutls30_3.4.11-4ubuntu1_ppc64el.deb ... Unpacking libgnutls30:ppc64el (3.4.11-4ubuntu1) over (3.4.10-4ubuntu1) ... Preparing to unpack .../libslang2_2.3.0-2.3ubuntu1_ppc64el.deb ... Unpacking libslang2:ppc64el (2.3.0-2.3ubuntu1) over (2.3.0-2ubuntu1) ... Preparing to unpack .../apt-transport-https_1.3~exp1_ppc64el.deb ... Unpacking apt-transport-https (1.3~exp1) over (1.2.10ubuntu1) ... Preparing to unpack .../libroken18-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libroken18-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libasn1-8-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libasn1-8-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libheimbase1-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libheimbase1-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libhcrypto4-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libhcrypto4-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libwind0-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libwind0-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libhx509-5-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libhx509-5-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libkrb5-26-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libkrb5-26-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libheimntlm0-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libheimntlm0-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libgssapi3-heimdal_1.7~git20160515+dfsg-1_ppc64el.deb ... Unpacking libgssapi3-heimdal:ppc64el (1.7~git20160515+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-15_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-15_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu4_ppc64el.deb ... Unpacking libldap-2.4-2:ppc64el (2.4.42+dfsg-2ubuntu4) over (2.4.42+dfsg-2ubuntu3) ... Selecting previously unselected package libpng16-16:ppc64el. Preparing to unpack .../libpng16-16_1.6.21-5_ppc64el.deb ... Unpacking libpng16-16:ppc64el (1.6.21-5) ... Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-1_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-1) over (2.4+20151223.gitfa8646d-1build1) ... Preparing to unpack .../binutils_2.26-9ubuntu1_ppc64el.deb ... Unpacking binutils (2.26-9ubuntu1) over (2.26-8ubuntu2) ... Preparing to unpack .../libgomp1_6.1.1-4ubuntu11_ppc64el.deb ... Unpacking libgomp1:ppc64el (6.1.1-4ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libitm1_6.1.1-4ubuntu11_ppc64el.deb ... Unpacking libitm1:ppc64el (6.1.1-4ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libatomic1_6.1.1-4ubuntu11_ppc64el.deb ... Unpacking libatomic1:ppc64el (6.1.1-4ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libasan2_5.3.1-20ubuntu1_ppc64el.deb ... Unpacking libasan2:ppc64el (5.3.1-20ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libubsan0_6.1.1-4ubuntu11_ppc64el.deb ... 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Unpacking gcc-5-base:ppc64el (5.3.1-20ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../dmsetup_2%3a1.02.124-1ubuntu1_ppc64el.deb ... Unpacking dmsetup (2:1.02.124-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Preparing to unpack .../dpkg-dev_1.18.7ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.7ubuntu1) over (1.18.4ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.7ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.7ubuntu1) over (1.18.4ubuntu1) ... Preparing to unpack .../make_4.1-9_ppc64el.deb ... Unpacking make (4.1-9) over (4.1-6) ... Preparing to unpack .../libpng12-0_1.2.54-6ubuntu1_ppc64el.deb ... Unpacking libpng12-0:ppc64el (1.2.54-6ubuntu1) over (1.2.54-1ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.4.0-23.41_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (4.4.0-23.41) over (4.4.0-21.37) ... Preparing to unpack .../optipng_0.7.6-1build1_ppc64el.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Preparing to unpack .../policyrcd-script-zg2_0.1-3_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3) over (0.1-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-6ubuntu1) ... Setting up perl-modules-5.22 (5.22.2-1) ... Setting up libperl5.22:ppc64el (5.22.2-1) ... Setting up perl (5.22.2-1) ... Setting up bzip2 (1.0.6-8build1) ... Setting up sysvinit-utils (2.88dsf-59.4ubuntu1) ... Setting up sysv-rc (2.88dsf-59.4ubuntu1) ... Setting up initscripts (2.88dsf-59.4ubuntu1) ... Installing new version of config file /etc/init.d/ondemand ... Installing new version of config file /etc/init.d/sendsigs ... Installing new version of config file /etc/init.d/umountroot ... Setting up libprocps5:ppc64el (2:3.3.11-3ubuntu1) ... Setting up procps (2:3.3.11-3ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up tzdata (2016d-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sun May 22 23:15:02 UTC 2016. Universal Time is now: Sun May 22 23:15:02 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libtasn1-6:ppc64el (4.8-1) ... Setting up libgnutls30:ppc64el (3.4.11-4ubuntu1) ... Setting up libslang2:ppc64el (2.3.0-2.3ubuntu1) ... Setting up apt-transport-https (1.3~exp1) ... Setting up libroken18-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libasn1-8-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libheimbase1-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libhcrypto4-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libwind0-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libhx509-5-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libkrb5-26-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libheimntlm0-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libgssapi3-heimdal:ppc64el (1.7~git20160515+dfsg-1) ... Setting up libsasl2-modules-db:ppc64el (2.1.26.dfsg1-15) ... Setting up libsasl2-2:ppc64el (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:ppc64el (2.4.42+dfsg-2ubuntu4) ... Setting up libpng16-16:ppc64el (1.6.21-5) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-1) ... Setting up binutils (2.26-9ubuntu1) ... Setting up libgomp1:ppc64el (6.1.1-4ubuntu11) ... Setting up libitm1:ppc64el (6.1.1-4ubuntu11) ... Setting up libatomic1:ppc64el (6.1.1-4ubuntu11) ... Setting up gcc-5-base:ppc64el (5.3.1-20ubuntu1) ... Setting up libasan2:ppc64el (5.3.1-20ubuntu1) ... Setting up libubsan0:ppc64el (6.1.1-4ubuntu11) ... Setting up cpp-5 (5.3.1-20ubuntu1) ... Setting up libcc1-0:ppc64el (6.1.1-4ubuntu11) ... Setting up libgcc-5-dev:ppc64el (5.3.1-20ubuntu1) ... Setting up gcc-5 (5.3.1-20ubuntu1) ... Setting up libstdc++-5-dev:ppc64el (5.3.1-20ubuntu1) ... Setting up g++-5 (5.3.1-20ubuntu1) ... Setting up dmsetup (2:1.02.124-1ubuntu1) ... Setting up libdpkg-perl (1.18.7ubuntu1) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.7ubuntu1) ... Setting up libpng12-0:ppc64el (1.2.54-6ubuntu1) ... Setting up linux-libc-dev:ppc64el (4.4.0-23.41) ... Setting up optipng (0.7.6-1build1) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-6ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9789455', 'ppc64el', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'rna-star_2.5.2a+dfsg-2.dsc'] Initiating build PACKAGEBUILD-9789455 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.2.0-36-generic #42-Ubuntu SMP Thu May 12 22:02:52 UTC 2016 ppc64le sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-ppc64el-004.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ rna-star 2.5.2a+dfsg-2 (ppc64el) 22 May 2016 23:15 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: rna-star Version: 2.5.2a+dfsg-2 Source Version: 2.5.2a+dfsg-2 Distribution: yakkety-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/rna-star-E5u8Si/rna-star-2.5.2a+dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/rna-star-E5u8Si' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9789455/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── rna-star_2.5.2a+dfsg-2.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-R4NnVI/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-R4NnVI/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-R4NnVI/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-R4NnVI/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-R4NnVI/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-R4NnVI/apt_archive ./ Packages [529 B] Fetched 2856 B in 0s (241 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-R4NnVI/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-R4NnVI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libhts-dev, vim-common, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libhts-dev, vim-common, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-rna-star-dummy' in '/«BUILDDIR»/resolver-w8vhC4/apt_archive/sbuild-build-depends-rna-star-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-w8vhC4/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-w8vhC4/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-w8vhC4/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-w8vhC4/apt_archive ./ Sources [440 B] Get:5 copy:/«BUILDDIR»/resolver-w8vhC4/apt_archive ./ Packages [705 B] Fetched 3264 B in 0s (250 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-w8vhC4/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install rna-star build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf vim-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl vim-gnome-py2 | vim-gtk-py2 | vim-gtk3-py2 | vim-athena-py2 | vim-nox-py2 Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl vim | vim-gnome | vim-gtk | vim-gtk3 | vim-athena | vim-nox | vim-tiny The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-rna-star-dummy vim-common zlib1g-dev 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 17.3 MB of archives. After this operation, 70.8 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-rna-star-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-w8vhC4/apt_archive ./ sbuild-build-depends-rna-star-dummy 0.invalid.0 [956 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main ppc64el groff-base ppc64el 1.22.3-7 [1370 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bsdmainutils ppc64el 9.0.6ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libpipeline1 ppc64el 1.4.1-2 [24.1 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main ppc64el man-db ppc64el 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libunistring0 ppc64el 0.9.3-5.2ubuntu1 [269 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libmagic1 ppc64el 1:5.25-2ubuntu1 [220 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main ppc64el file ppc64el 1:5.25-2ubuntu1 [21.7 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main ppc64el vim-common ppc64el 2:7.4.1689-3ubuntu2 [104 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libasprintf0v5 ppc64el 0.19.7-2ubuntu3 [6604 B] Get:11 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gettext-base ppc64el 0.19.7-2ubuntu3 [46.8 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libglib2.0-0 ppc64el 2.48.1-1 [1044 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libicu57 ppc64el 57.1-1 [7781 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libxml2 ppc64el 2.9.3+dfsg1-1build1 [610 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsigsegv2 ppc64el 2.10-5 [14.2 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main ppc64el m4 ppc64el 1.4.17-5 [198 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el autoconf all 2.69-10 [321 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el autotools-dev all 20160430.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main ppc64el automake all 1:1.15-4ubuntu1 [510 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main ppc64el autopoint all 0.19.7-2ubuntu3 [406 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcroco3 ppc64el 0.6.11-1 [75.6 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gettext ppc64el 0.19.7-2ubuntu3 [1100 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main ppc64el po-debconf all 1.0.19 [234 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libarchive-zip-perl all 1.57-1 [84.0 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libfile-stripnondeterminism-perl all 0.016-1 [11.0 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dh-strip-nondeterminism all 0.016-1 [4858 B] Get:29 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtool all 2.4.6-0.1 [193 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dh-autoreconf all 12 [15.8 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main ppc64el debhelper all 9.20160403ubuntu1 [711 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libhts1 ppc64el 1.3.1-1ubuntu1 [250 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libhts-dev ppc64el 1.3.1-1ubuntu1 [333 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main ppc64el zlib1g-dev ppc64el 1:1.2.8.dfsg-2ubuntu5 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.3 MB in 1s (12.2 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12088 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_ppc64el.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_ppc64el.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../libpipeline1_1.4.1-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_ppc64el.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:ppc64el. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_ppc64el.deb ... Unpacking libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_ppc64el.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package vim-common. Preparing to unpack .../vim-common_2%3a7.4.1689-3ubuntu2_ppc64el.deb ... Unpacking vim-common (2:7.4.1689-3ubuntu2) ... Selecting previously unselected package libasprintf0v5:ppc64el. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_ppc64el.deb ... Unpacking libasprintf0v5:ppc64el (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_ppc64el.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.48.1-1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.48.1-1) ... Selecting previously unselected package libicu57:ppc64el. Preparing to unpack .../libicu57_57.1-1_ppc64el.deb ... Unpacking libicu57:ppc64el (57.1-1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../libxml2_2.9.3+dfsg1-1build1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.3+dfsg1-1build1) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../libsigsegv2_2.10-5_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../m4_1.4.17-5_ppc64el.deb ... 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Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.57-1_all.deb ... Unpacking libarchive-zip-perl (1.57-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.016-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.016-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.016-1_all.deb ... Unpacking dh-strip-nondeterminism (0.016-1) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.6-0.1_all.deb ... Unpacking libtool (2.4.6-0.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20160403ubuntu1_all.deb ... Unpacking debhelper (9.20160403ubuntu1) ... Selecting previously unselected package libhts1:ppc64el. Preparing to unpack .../libhts1_1.3.1-1ubuntu1_ppc64el.deb ... Unpacking libhts1:ppc64el (1.3.1-1ubuntu1) ... Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../libhts-dev_1.3.1-1ubuntu1_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.3.1-1ubuntu1) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu5_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.8.dfsg-2ubuntu5) ... Selecting previously unselected package sbuild-build-depends-rna-star-dummy. Preparing to unpack .../sbuild-build-depends-rna-star-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-rna-star-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:ppc64el (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Setting up libmagic1:ppc64el (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up vim-common (2:7.4.1689-3ubuntu2) ... Setting up libasprintf0v5:ppc64el (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:ppc64el (2.48.1-1) ... No schema files found: doing nothing. Setting up libicu57:ppc64el (57.1-1) ... Setting up libxml2:ppc64el (2.9.3+dfsg1-1build1) ... Setting up libsigsegv2:ppc64el (2.10-5) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-10) ... Setting up autotools-dev (20160430.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libcroco3:ppc64el (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.57-1) ... Setting up libfile-stripnondeterminism-perl (0.016-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up libhts1:ppc64el (1.3.1-1ubuntu1) ... Setting up libhts-dev:ppc64el (1.3.1-1ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.8.dfsg-2ubuntu5) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up sbuild-build-depends-rna-star-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.016-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 4.2.0-36-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.26-9ubuntu1 dpkg-dev_1.18.7ubuntu1 g++-5_5.3.1-20ubuntu1 gcc-5_5.3.1-20ubuntu1 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-20ubuntu1 libstdc++6_6.1.1-4ubuntu11 linux-libc-dev_4.4.0-23.41 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~exp1 apt-transport-https_1.3~exp1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 binutils_2.26-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-20ubuntu1 dash_0.5.8-2.1ubuntu2 debconf_1.5.59ubuntu1 debhelper_9.20160403ubuntu1 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.124-1ubuntu1 dpkg_1.18.7ubuntu1 dpkg-dev_1.18.7ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-20ubuntu1 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-20ubuntu1 gcc-5-base_5.3.1-20ubuntu1 gcc-6-base_6.1.1-4ubuntu11 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.17ubuntu1 init_1.33ubuntu2 init-system-helpers_1.33ubuntu2 initscripts_2.88dsf-59.4ubuntu1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.3~exp1 libarchive-zip-perl_1.57-1 libasan2_5.3.1-20ubuntu1 libasn1-8-heimdal_1.7~git20160515+dfsg-1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-4ubuntu11 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.28-5ubuntu1 libbz2-1.0_1.0.6-8build1 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-4ubuntu11 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.124-1ubuntu1 libdpkg-perl_1.18.7ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.28-5ubuntu1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgcc-5-dev_5.3.1-20ubuntu1 libgcc1_1:6.1.1-4ubuntu11 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.11-4ubuntu1 libgomp1_6.1.1-4ubuntu11 libgpg-error0_1.22-2 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20160515+dfsg-1 libhcrypto4-heimdal_1.7~git20160515+dfsg-1 libheimbase1-heimdal_1.7~git20160515+dfsg-1 libheimntlm0-heimdal_1.7~git20160515+dfsg-1 libhogweed4_3.2-1 libhts-dev_1.3.1-1ubuntu1 libhts1_1.3.1-1ubuntu1 libhx509-5-heimdal_1.7~git20160515+dfsg-1 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libisl15_0.16.1-1 libitm1_6.1.1-4ubuntu11 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20160515+dfsg-1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.28-5ubuntu1 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-5 libprocps4_2:3.3.10-4ubuntu2 libprocps5_2:3.3.11-3ubuntu1 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160515+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28-5ubuntu1 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-20ubuntu1 libstdc++6_6.1.1-4ubuntu11 libsystemd0_229-6ubuntu1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.1.1-4ubuntu11 libudev1_229-6ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu1 libwind0-heimdal_1.7~git20160515+dfsg-1 libxml2_2.9.3+dfsg1-1build1 linux-libc-dev_4.4.0-23.41 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110ubuntu1 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28-5ubuntu1 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.11-3ubuntu1 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rna-star-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_229-6ubuntu1 systemd-sysv_229-6ubuntu1 sysv-rc_2.88dsf-59.4ubuntu1 sysvinit-utils_2.88dsf-59.4ubuntu1 tar_1.29-1 tzdata_2016d-2 ubuntu-keyring_2016.05.13 util-linux_2.28-5ubuntu1 vim-common_2:7.4.1689-3ubuntu2 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Sun May 22 09:10:33 2016 UTC using RSA key ID F09F4872 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./rna-star_2.5.2a+dfsg-2.dsc dpkg-source: info: extracting rna-star in rna-star-2.5.2a+dfsg dpkg-source: info: unpacking rna-star_2.5.2a+dfsg.orig.tar.xz dpkg-source: info: unpacking rna-star_2.5.2a+dfsg-2.debian.tar.xz dpkg-source: info: applying donotuse_own_htslib.patch dpkg-source: info: applying mips_shm_noreserve.patch dpkg-source: info: applying reproducible.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/rna-star-2.5.2a+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/rna-star-2.5.2a+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package rna-star dpkg-buildpackage: info: source version 2.5.2a+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build rna-star-2.5.2a+dfsg dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«BUILDDIR»/rna-star-2.5.2a+dfsg' cd source && /usr/bin/make clean make[2]: Entering directory '/«BUILDDIR»/rna-star-2.5.2a+dfsg/source' rm -f *.o STAR STARstatic STARlong Depend.list make[2]: Leaving directory '/«BUILDDIR»/rna-star-2.5.2a+dfsg/source' rm -f source/parametersDefault.xxd make[1]: Leaving directory '/«BUILDDIR»/rna-star-2.5.2a+dfsg' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/«BUILDDIR»/rna-star-2.5.2a+dfsg' cd source && /usr/bin/make CCFLAGS_common_add="-flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" CCFLAGS="-flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x" LDFLAGS_add="-Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/«BUILDDIR»/rna-star-2.5.2a+dfsg/source' Makefile:89: Depend.list: No such file or directory xxd -i parametersDefault > parametersDefault.xxd echo blocksOverlap.cpp sjdbPrepare.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_quantTranscriptome.cpp bamRemoveDuplicates.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_mapOneRead.cpp PackedArray.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Genome_insertSequences.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp BAMbinSortUnmapped.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlignChunk.cpp sortSuffixesBucket.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp ReadAlign_chimericDetection.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp outputSJ.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp GlobalVariables.cpp Parameters.cpp sjSplitAlign.cpp Transcriptome.cpp BAMfunctions.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp ThreadControl.cpp Genome.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp genomeParametersWrite.cpp ReadAlign_outputTranscriptSJ.cpp funCompareUintAndSuffixesMemcmp.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp genomeSAindex.cpp stringSubstituteAll.cpp SharedMemory.cpp sysRemoveDir.cpp SequenceFuns.cpp Quantifications.cpp BAMoutput.cpp InOutStreams.cpp ReadAlign_storeAligns.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp extendAlign.cpp OutSJ.cpp sjdbLoadFromFiles.cpp bam_cat.c blocksOverlap.cpp sjdbPrepare.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_quantTranscriptome.cpp bamRemoveDuplicates.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_mapOneRead.cpp PackedArray.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Genome_insertSequences.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp BAMbinSortUnmapped.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlignChunk.cpp sortSuffixesBucket.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp ReadAlign_chimericDetection.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp outputSJ.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp GlobalVariables.cpp Parameters.cpp sjSplitAlign.cpp Transcriptome.cpp BAMfunctions.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp ThreadControl.cpp Genome.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp genomeParametersWrite.cpp ReadAlign_outputTranscriptSJ.cpp funCompareUintAndSuffixesMemcmp.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp genomeSAindex.cpp stringSubstituteAll.cpp SharedMemory.cpp sysRemoveDir.cpp SequenceFuns.cpp Quantifications.cpp BAMoutput.cpp InOutStreams.cpp ReadAlign_storeAligns.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp extendAlign.cpp OutSJ.cpp sjdbLoadFromFiles.cpp bam_cat.c /bin/rm -f ./Depend.list g++ -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -MM blocksOverlap.cpp sjdbPrepare.cpp genomeScanFastaFiles.cpp sjdbBuildIndex.cpp ReadAlign_quantTranscriptome.cpp bamRemoveDuplicates.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_mapOneRead.cpp PackedArray.cpp readLoad.cpp binarySearch2.cpp sjdbInsertJunctions.cpp Transcriptome_geneCountsAddAlign.cpp ReadAlign_stitchPieces.cpp funCompareUintAndSuffixes.cpp STAR.cpp BAMbinSortByCoordinate.cpp Genome_insertSequences.cpp Transcriptome_quantAlign.cpp ReadAlign_outputAlignments.cpp ReadAlign_alignBAM.cpp BAMbinSortUnmapped.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlignChunk.cpp sortSuffixesBucket.cpp ReadAlign_outputTranscriptCIGARp.cpp ErrorWarning.cpp Stats.cpp Parameters_openReadsFiles.cpp stitchAlignToTranscript.cpp TimeFunctions.cpp stitchGapIndel.cpp ReadAlign_chimericDetection.cpp signalFromBAM.cpp sjdbLoadFromStream.cpp outputSJ.cpp genomeGenerate.cpp Parameters_closeReadsFiles.cpp stitchWindowAligns.cpp GlobalVariables.cpp Parameters.cpp sjSplitAlign.cpp Transcriptome.cpp BAMfunctions.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlignChunk_mapChunk.cpp serviceFuns.cpp ThreadControl.cpp Genome.cpp insertSeqSA.cpp streamFuns.cpp ReadAlignChunk_processChunks.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_multMapSelect.cpp Transcript_alignScore.cpp genomeParametersWrite.cpp ReadAlign_outputTranscriptSJ.cpp funCompareUintAndSuffixesMemcmp.cpp ReadAlign.cpp mapThreadsSpawn.cpp loadGTF.cpp ReadAlign_assignAlignToWindow.cpp genomeSAindex.cpp stringSubstituteAll.cpp SharedMemory.cpp sysRemoveDir.cpp SequenceFuns.cpp Quantifications.cpp BAMoutput.cpp InOutStreams.cpp ReadAlign_storeAligns.cpp ReadAlign_oneRead.cpp Transcript.cpp SuffixArrayFuns.cpp alignSmithWaterman.cpp extendAlign.cpp OutSJ.cpp sjdbLoadFromFiles.cpp bam_cat.c parametersDefault.xxd >> Depend.list g++: warning: parametersDefault.xxd: linker input file unused because linking not done g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' SharedMemory.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' PackedArray.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' SuffixArrayFuns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' STAR.cpp STAR.cpp: In function ‘int main(int, char**)’: STAR.cpp:299:49: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(P->inOut->outBAMfileUnsorted); ^ STAR.cpp:303:46: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(P->inOut->outQuantBAMfile); ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Parameters.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' InOutStreams.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' SequenceFuns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Genome.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Stats.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Transcript.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Transcript_alignScore.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_storeAligns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_stitchPieces.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_multMapSelect.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_mapOneRead.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' readLoad.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlignChunk.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlignChunk_processChunks.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlignChunk_mapChunk.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' OutSJ.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' outputSJ.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' blocksOverlap.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ThreadControl.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' sysRemoveDir.cpp sysRemoveDir.cpp:7:58: warning: unused parameter ‘sb’ [-Wunused-parameter] int removeFileOrDir(const char *fpath,const struct stat *sb, int typeflag, struct FTW *ftwbuf) { ^ sysRemoveDir.cpp:7:88: warning: unused parameter ‘ftwbuf’ [-Wunused-parameter] int removeFileOrDir(const char *fpath,const struct stat *sb, int typeflag, struct FTW *ftwbuf) { ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_maxMappableLength2strands.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' binarySearch2.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_outputAlignments.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_outputTranscriptSAM.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_outputTranscriptSJ.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_outputTranscriptCIGARp.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_createExtendWindowsWithAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_assignAlignToWindow.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_oneRead.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_stitchWindowSeeds.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_chimericDetection.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' stitchWindowAligns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' extendAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' stitchAlignToTranscript.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' alignSmithWaterman.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' genomeGenerate.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' genomeParametersWrite.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' genomeScanFastaFiles.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' genomeSAindex.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Genome_insertSequences.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' insertSeqSA.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' funCompareUintAndSuffixes.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' sortSuffixesBucket.cpp sortSuffixesBucket.cpp: In function ‘void sortSuffixesBucket(char*, void*, int, int)’: sortSuffixesBucket.cpp:27:43: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] uint64_t iprev=*(uint64_t*)(ind+0*indSkip); ^ sortSuffixesBucket.cpp:31:37: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] if (*(uint64_t*)(ind+id*indSkip)==iprev) ^ sortSuffixesBucket.cpp:43:43: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] iprev=*(uint64_t*)(ind+id*indSkip); ^ sortSuffixesBucket.cpp:62:49: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] charCount[G[*(uint64_t*)(ind+id*indSkip+8) + charShift]]++;//TODO can template uint64_t ^ sortSuffixesBucket.cpp:62:57: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] charCount[G[*(uint64_t*)(ind+id*indSkip+8) + charShift]]++;//TODO can template uint64_t ^ sortSuffixesBucket.cpp:62:72: warning: array subscript has type ‘char’ [-Wchar-subscripts] charCount[G[*(uint64_t*)(ind+id*indSkip+8) + charShift]]++;//TODO can template uint64_t ^ sortSuffixesBucket.cpp:85:50: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] char c=G[*(uint64_t*)(ind+id*indSkip+8) + charShift]; ^ sortSuffixesBucket.cpp:85:58: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] char c=G[*(uint64_t*)(ind+id*indSkip+8) + charShift]; ^ sortSuffixesBucket.cpp:86:44: warning: array subscript has type ‘char’ [-Wchar-subscripts] memcpy(ind1+charStart[c]*indSkip, ind+id*indSkip, indSkip); ^ sortSuffixesBucket.cpp:86:62: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] memcpy(ind1+charStart[c]*indSkip, ind+id*indSkip, indSkip); ^ sortSuffixesBucket.cpp:87:32: warning: array subscript has type ‘char’ [-Wchar-subscripts] charStart[c]++; ^ sortSuffixesBucket.cpp:89:36: warning: pointer of type ‘void *’ used in arithmetic [-Wpointer-arith] memcpy(ind+uB1[iu]*indSkip, ind1+uB1[iu]*indSkip, (uB2[iu]-uB1[iu])*indSkip); ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' funCompareUintAndSuffixesMemcmp.cpp funCompareUintAndSuffixesMemcmp.cpp: In function ‘int funCompareUintAndSuffixesMemcmp(const void*, const void*)’: funCompareUintAndSuffixesMemcmp.cpp:21:15: warning: unused variable ‘p5’ [-Wunused-variable] char *p5=g_funCompareUintAndSuffixesMemcmp_G+va[1]+g_funCompareUintAndSuffixesMemcmp_L; ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' TimeFunctions.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ErrorWarning.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' loadGTF.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' streamFuns.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' stringSubstituteAll.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Transcriptome.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Transcriptome_quantAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_quantTranscriptome.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Quantifications.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' Transcriptome_geneCountsAddAlign.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' sjdbLoadFromFiles.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' sjdbLoadFromStream.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' sjdbPrepare.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' sjdbBuildIndex.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' sjdbInsertJunctions.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' mapThreadsSpawn.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' BAMoutput.cpp BAMoutput.cpp: In member function ‘void BAMoutput::unsortedOneAlign(char*, long long unsigned int, long long unsigned int)’: BAMoutput.cpp:62:47: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(bgzfBAM,bamArray,binBytes1); ^ BAMoutput.cpp: In member function ‘void BAMoutput::unsortedFlush()’: BAMoutput.cpp:75:43: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(bgzfBAM,bamArray,binBytes1); ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' BAMfunctions.cpp BAMfunctions.cpp: In function ‘void outBAMwriteHeader(BGZF*, const string&, const std::vector >&, const std::vector&)’: BAMfunctions.cpp:76:31: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp,"BAM\001",4); ^ BAMfunctions.cpp:78:46: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp,(char*) &hlen,sizeof(hlen)); ^ BAMfunctions.cpp:79:37: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp,samh.c_str(),hlen); ^ BAMfunctions.cpp:81:46: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp,(char*) &nchr,sizeof(nchr)); ^ BAMfunctions.cpp:85:50: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp,(char*) &rlen,sizeof(rlen)); ^ BAMfunctions.cpp:86:47: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp,chrn.at(ii).data(),rlen); //this includes \0 at the end of the string ^ BAMfunctions.cpp:87:50: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp,(char*) &slen,sizeof(slen)); ^ BAMfunctions.cpp:89:19: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(fp); ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' ReadAlign_alignBAM.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' BAMbinSortByCoordinate.cpp BAMbinSortByCoordinate.cpp: In function ‘void BAMbinSortByCoordinate(unsigned int, long long unsigned int, long long unsigned int, long long unsigned int, std::__cxx11::string, Parameters*)’: BAMbinSortByCoordinate.cpp:56:64: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(bgzfBin,ib, *((uint32*) ib)+sizeof(uint32) ); ^ BAMbinSortByCoordinate.cpp:59:24: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(bgzfBin); ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' signalFromBAM.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' bamRemoveDuplicates.cpp bamRemoveDuplicates.cpp: In function ‘void bamRemoveDuplicates(std::__cxx11::string, std::__cxx11::string, Parameters*)’: bamRemoveDuplicates.cpp:125:38: warning: ignoring return value of ‘int bam_hdr_write(BGZF*, const bam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] bam_hdr_write(bgzfOut, bamHeader); ^ bamRemoveDuplicates.cpp:152:48: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(bgzfOut,bamRaw,bamS); ^ bamRemoveDuplicates.cpp:233:41: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(bgzfOut,bamRaw,bamLength); ^ bamRemoveDuplicates.cpp:234:24: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(bgzfOut); ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' BAMbinSortUnmapped.cpp BAMbinSortUnmapped.cpp:5:78: warning: unused parameter ‘bgzfBAM’ [-Wunused-parameter] void BAMbinSortUnmapped(uint32 iBin, uint nThreads, string dirBAMsort, BGZF *bgzfBAM, Parameters *P) { ^ BAMbinSortUnmapped.cpp: In function ‘void BAMbinSortUnmapped(unsigned int, long long unsigned int, std::__cxx11::string, BGZF*, Parameters*)’: BAMbinSortUnmapped.cpp:45:59: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(bgzfBin, bamIn[it], bamSize.at(it)); ^ BAMbinSortUnmapped.cpp:62:24: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(bgzfBin); ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -pipe -Wall -Wextra -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D'COMPILATION_TIME_PLACE=""' bam_cat.c bam_cat.c: In function ‘int bam_cat(int, char* const*, const bam_hdr_t*, const char*)’: bam_cat.c:80:32: warning: ignoring return value of ‘int bam_hdr_write(BGZF*, const bam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] if (h) bam_hdr_write(fp, h); ^ bam_cat.c:96:53: warning: ignoring return value of ‘int bam_hdr_write(BGZF*, const bam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] if (h == 0 && i == 0) bam_hdr_write(fp, old); ^ bam_cat.c:99:123: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, (void*)((char*)in->uncompressed_block + in->block_offset), in->block_length - in->block_offset); ^ bam_cat.c:100:27: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(fp); ^ bam_cat.c:111:46: warning: ignoring return value of ‘ssize_t bgzf_raw_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_raw_write(fp, ebuf, len); ^ bam_cat.c:115:54: warning: ignoring return value of ‘ssize_t bgzf_raw_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] if(j!=0) bgzf_raw_write(fp, ebuf, es); ^ bam_cat.c:118:45: warning: ignoring return value of ‘ssize_t bgzf_raw_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_raw_write(fp, buf, len); ^ bam_cat.c:131:45: warning: ignoring return value of ‘ssize_t bgzf_raw_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_raw_write(fp, ebuf, es); ^ g++ -o STAR -O3 -pipe -std=c++11 -Wall -Wextra -fopenmp -D'COMPILATION_TIME_PLACE=""' -flto -flto -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -fPIE -fstack-protector-strong -Wformat -Werror=format-security SharedMemory.o PackedArray.o SuffixArrayFuns.o STAR.o Parameters.o InOutStreams.o SequenceFuns.o Genome.o Stats.o Transcript.o Transcript_alignScore.o ReadAlign.o ReadAlign_storeAligns.o ReadAlign_stitchPieces.o ReadAlign_multMapSelect.o ReadAlign_mapOneRead.o readLoad.o ReadAlignChunk.o ReadAlignChunk_processChunks.o ReadAlignChunk_mapChunk.o OutSJ.o outputSJ.o blocksOverlap.o ThreadControl.o sysRemoveDir.o ReadAlign_maxMappableLength2strands.o binarySearch2.o ReadAlign_outputAlignments.o ReadAlign_outputTranscriptSAM.o ReadAlign_outputTranscriptSJ.o ReadAlign_outputTranscriptCIGARp.o ReadAlign_createExtendWindowsWithAlign.o ReadAlign_assignAlignToWindow.o ReadAlign_oneRead.o ReadAlign_stitchWindowSeeds.o ReadAlign_chimericDetection.o stitchWindowAligns.o extendAlign.o stitchAlignToTranscript.o alignSmithWaterman.o genomeGenerate.o genomeParametersWrite.o genomeScanFastaFiles.o genomeSAindex.o Genome_insertSequences.o insertSeqSA.o funCompareUintAndSuffixes.o sortSuffixesBucket.o funCompareUintAndSuffixesMemcmp.o TimeFunctions.o ErrorWarning.o loadGTF.o streamFuns.o stringSubstituteAll.o Transcriptome.o Transcriptome_quantAlign.o ReadAlign_quantTranscriptome.o Quantifications.o Transcriptome_geneCountsAddAlign.o sjdbLoadFromFiles.o sjdbLoadFromStream.o sjdbPrepare.o sjdbBuildIndex.o sjdbInsertJunctions.o mapThreadsSpawn.o Parameters_openReadsFiles.cpp Parameters_closeReadsFiles.cpp BAMoutput.o BAMfunctions.o ReadAlign_alignBAM.o BAMbinSortByCoordinate.o signalFromBAM.o bamRemoveDuplicates.o BAMbinSortUnmapped.o bam_cat.o GlobalVariables.cpp -pthread -Bstatic -lhts -Bdynamic -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now Parameters_openReadsFiles.cpp: In member function ‘void Parameters::openReadsFiles()’: Parameters_openReadsFiles.cpp:58:97: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(("ls -lL " + file1 + " > "+ outFileTmp+"/readFilesIn.info 2>&1").c_str()); ^ Parameters_openReadsFiles.cpp: In member function ‘openReadsFiles’: Parameters_openReadsFiles.cpp:30:20: warning: variable ‘imate’ might be clobbered by ‘longjmp’ or ‘vfork’ [-Wclobbered] for (uint imate=0;imate= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform ppc64el: rna-star dh_gencontrol debug symbol wrapper: packages to act on: rna-star dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package rna-star (pkgdir debian/rna-star, ddeb package dir debian/rna-star-dbgsym) dh_gencontrol debug symbol wrapper: building rna-star-dbgsym_2.5.2a+dfsg-2_ppc64el.ddeb dpkg-deb: building package 'rna-star-dbgsym' in '../rna-star-dbgsym_2.5.2a+dfsg-2_ppc64el.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile rna-star-dbgsym_2.5.2a+dfsg-2_ppc64el.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 129 pkgstriptranslations: processing rna-star (in debian/rna-star); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/rna-star/DEBIAN/control, package rna-star, directory debian/rna-star pkgstripfiles: Running PNG optimization (using 4 cpus) for package rna-star ... pkgstripfiles: No PNG files. dpkg-deb: building package 'rna-star' in '../rna-star_2.5.2a+dfsg-2_ppc64el.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../rna-star_2.5.2a+dfsg-2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build rna-star-2.5.2a+dfsg dpkg-buildpackage: info: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160522-2316 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ rna-star_2.5.2a+dfsg-2_ppc64el.changes: ─────────────────────────────────────── Format: 1.8 Date: Sat, 21 May 2016 20:53:28 +0000 Source: rna-star Binary: rna-star Architecture: ppc64el Version: 2.5.2a+dfsg-2 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: rna-star - ultrafast universal RNA-seq aligner Changes: rna-star (2.5.2a+dfsg-2) unstable; urgency=medium . * Team upload. * Make build reproducible. - Stop recording build environment in binary. * Enable full hardening. Checksums-Sha1: 9d48d5c42aafb24941f032a20ee972ffbb8751a2 758044 rna-star-dbgsym_2.5.2a+dfsg-2_ppc64el.ddeb 901afcacb72e9dc8bc6fdcd315b5e0012578e7d1 356772 rna-star_2.5.2a+dfsg-2_ppc64el.deb Checksums-Sha256: 0278fb3463d6f3499ca4d237ca8731c03e61f246124c178baebf9499840ef40f 758044 rna-star-dbgsym_2.5.2a+dfsg-2_ppc64el.ddeb b04cd014773f2584bbb521a3fe185bb1d7e3d9dbd07f4660175cdf06cb6763c4 356772 rna-star_2.5.2a+dfsg-2_ppc64el.deb Files: 4322a189b9da917a06b007b6825f4bc8 758044 science extra rna-star-dbgsym_2.5.2a+dfsg-2_ppc64el.ddeb 7e9e42b34a2967e0f2f2b37f12a28b84 356772 science optional rna-star_2.5.2a+dfsg-2_ppc64el.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ rna-star_2.5.2a+dfsg-2_ppc64el.deb ────────────────────────────────── new debian package, version 2.0. size 356772 bytes: control archive=1344 bytes. 1453 bytes, 25 lines control 602 bytes, 9 lines md5sums Package: rna-star Version: 2.5.2a+dfsg-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 879 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.4.4), libgomp1 (>= 4.9), libhts1 (>= 1.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/alexdobin/STAR/ Description: ultrafast universal RNA-seq aligner Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy. drwxr-xr-x root/root 0 2016-05-22 23:16 ./ drwxr-xr-x root/root 0 2016-05-22 23:16 ./usr/ drwxr-xr-x root/root 0 2016-05-22 23:16 ./usr/bin/ -rwxr-xr-x root/root 621784 2016-05-22 23:16 ./usr/bin/STAR drwxr-xr-x root/root 0 2016-05-22 23:16 ./usr/share/ drwxr-xr-x root/root 0 2016-05-22 23:16 ./usr/share/doc-base/ -rw-r--r-- root/root 1179 2016-05-21 20:57 ./usr/share/doc-base/rna-star drwxr-xr-x root/root 0 2016-05-22 23:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-22 23:16 ./usr/share/doc/rna-star/ -rw-r--r-- root/root 220 2016-05-21 20:57 ./usr/share/doc/rna-star/README.Debian -rw-r--r-- root/root 3196 2016-05-10 21:41 ./usr/share/doc/rna-star/README.md -rw-r--r-- root/root 2119 2016-05-10 21:41 ./usr/share/doc/rna-star/RELEASEnotes.md.gz -rw-r--r-- root/root 251507 2016-05-10 21:41 ./usr/share/doc/rna-star/STARmanual.pdf -rw-r--r-- root/root 849 2016-05-21 21:05 ./usr/share/doc/rna-star/changelog.Debian.gz -rw-r--r-- root/root 2444 2016-05-21 20:57 ./usr/share/doc/rna-star/copyright drwxr-xr-x root/root 0 2016-05-22 23:16 ./usr/share/man/ drwxr-xr-x root/root 0 2016-05-22 23:16 ./usr/share/man/man1/ -rw-r--r-- root/root 814 2016-05-22 23:16 ./usr/share/man/man1/STAR.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: ppc64el Build-Space: 20264 Build-Time: 78 Distribution: yakkety-proposed Host Architecture: ppc64el Install-Time: 10 Job: rna-star_2.5.2a+dfsg-2.dsc Machine Architecture: ppc64el Package: rna-star Package-Time: 89 Source-Version: 2.5.2a+dfsg-2 Space: 20264 Status: successful Version: 2.5.2a+dfsg-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160522-2316 Build needed 00:01:29, 20264k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9789455'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9789455/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9789455'] Unmounting chroot for build PACKAGEBUILD-9789455... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9789455'] Removing build PACKAGEBUILD-9789455