rna-star 2.5.2b+dfsg-1 source package in Ubuntu

Changelog

rna-star (2.5.2b+dfsg-1) unstable; urgency=medium

  * New upstream release.
  * Remove x32 from archs.

 -- Sascha Steinbiss <email address hidden>  Tue, 23 Aug 2016 12:27:14 +0000

Upload details

Uploaded by:
Debian Med on 2016-08-24
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64 arm64 ppc64el mips64el s390x
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Zesty release on 2016-11-03 universe misc

Downloads

File Size SHA-256 Checksum
rna-star_2.5.2b+dfsg-1.dsc 2.1 KiB 3a2435fe33224c589d28d66f87abf8afc48e0a63d59ce1d424e44ea05dbf1502
rna-star_2.5.2b+dfsg.orig.tar.xz 313.1 KiB 92f442782cbfe1749ee386c49746cac482c31a8d44b3884f374018a4fb98b3c8
rna-star_2.5.2b+dfsg-1.debian.tar.xz 365.7 KiB fc548983122d9a5330ad28a027c3aba3e9669f5e5916b7c417ebde6d49322051

Available diffs

No changes file available.

Binary packages built by this source

rna-star: ultrafast universal RNA-seq aligner

 Spliced Transcripts Alignment to a Reference (STAR) software based on a
 previously undescribed RNA-seq alignment algorithm that uses sequential
 maximum mappable seed search in uncompressed suffix arrays followed by
 seed clustering and stitching procedure. STAR outperforms other aligners
 by a factor of >50 in mapping speed, aligning to the human genome 550
 million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
 while at the same time improving alignment sensitivity and precision. In
 addition to unbiased de novo detection of canonical junctions, STAR can
 discover non-canonical splices and chimeric (fusion) transcripts, and is
 also capable of mapping full-length RNA sequences. Using Roche 454
 sequencing of reverse transcription polymerase chain reaction amplicons,
 the authors experimentally validated 1960 novel intergenic splice
 junctions with an 80-90% success rate, corroborating the high precision
 of the STAR mapping strategy.

rna-star-dbgsym: debug symbols for package rna-star

 Spliced Transcripts Alignment to a Reference (STAR) software based on a
 previously undescribed RNA-seq alignment algorithm that uses sequential
 maximum mappable seed search in uncompressed suffix arrays followed by
 seed clustering and stitching procedure. STAR outperforms other aligners
 by a factor of >50 in mapping speed, aligning to the human genome 550
 million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
 while at the same time improving alignment sensitivity and precision. In
 addition to unbiased de novo detection of canonical junctions, STAR can
 discover non-canonical splices and chimeric (fusion) transcripts, and is
 also capable of mapping full-length RNA sequences. Using Roche 454
 sequencing of reverse transcription polymerase chain reaction amplicons,
 the authors experimentally validated 1960 novel intergenic splice
 junctions with an 80-90% success rate, corroborating the high precision
 of the STAR mapping strategy.