rna-star 2.5.4b+dfsg-1 source package in Ubuntu
Changelog
rna-star (2.5.4b+dfsg-1) unstable; urgency=medium * New upstream release. * Respect nocheck flag in test override. -- Sascha Steinbiss <email address hidden> Sun, 11 Feb 2018 13:37:19 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- amd64 arm64 ppc64el mips64el
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Bionic | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
rna-star_2.5.4b+dfsg-1.dsc | 2.1 KiB | 12f49265422497be26ce08327e3d3fe2e7d14c91c26b26b91c238f8a725a6ab9 |
rna-star_2.5.4b+dfsg.orig.tar.xz | 335.0 KiB | 5f9bf4bb5338d8c75984b668d945a1b49f35ca38be54d6cf2e4fc9ceb877edb1 |
rna-star_2.5.4b+dfsg-1.debian.tar.xz | 367.2 KiB | 332414338de10b973173e3a5de57dac862728ca29a65525ad0376eddaf47fb1f |
Available diffs
- diff from 2.5.4a+dfsg-1 to 2.5.4b+dfsg-1 (155.9 KiB)
No changes file available.
Binary packages built by this source
- rna-star: ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a
previously undescribed RNA-seq alignment algorithm that uses sequential
maximum mappable seed search in uncompressed suffix arrays followed by
seed clustering and stitching procedure. STAR outperforms other aligners
by a factor of >50 in mapping speed, aligning to the human genome 550
million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
while at the same time improving alignment sensitivity and precision. In
addition to unbiased de novo detection of canonical junctions, STAR can
discover non-canonical splices and chimeric (fusion) transcripts, and is
also capable of mapping full-length RNA sequences. Using Roche 454
sequencing of reverse transcription polymerase chain reaction amplicons,
the authors experimentally validated 1960 novel intergenic splice
junctions with an 80-90% success rate, corroborating the high precision
of the STAR mapping strategy.
- rna-star-dbgsym: debug symbols for rna-star