rna-star 2.7.5c+dfsg-3 source package in Ubuntu


rna-star (2.7.5c+dfsg-3) unstable; urgency=medium

  * Source upload to enable testing migration.
  * Confirmed autopkgtest fixed.
    Closes: #970340

 -- Sascha Steinbiss <email address hidden>  Wed, 16 Sep 2020 08:56:26 +0200

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Uploaded by:
Debian Med
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Original maintainer:
Debian Med
amd64 arm64 ppc64el mips64el
Medium Urgency

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Series Pocket Published Component Section


File Size SHA-256 Checksum
rna-star_2.7.5c+dfsg-3.dsc 2.1 KiB 0d6075e333460fb131d748ef9bf4b0e38f51b581dbed3bd428621c44c9b28ef0
rna-star_2.7.5c+dfsg.orig.tar.xz 434.8 KiB 916a0df012fdd05bec19a761152fbc105d2a8d1a597d6172cc1310c680c5b66e
rna-star_2.7.5c+dfsg-3.debian.tar.xz 367.0 KiB bef237b2c6b5908545721af954fbfca6197e31d246c257541c1246315c2f30cc

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Binary packages built by this source

rna-star: ultrafast universal RNA-seq aligner

 Spliced Transcripts Alignment to a Reference (STAR) software based on a
 previously undescribed RNA-seq alignment algorithm that uses sequential
 maximum mappable seed search in uncompressed suffix arrays followed by
 seed clustering and stitching procedure. STAR outperforms other aligners
 by a factor of >50 in mapping speed, aligning to the human genome 550
 million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
 while at the same time improving alignment sensitivity and precision. In
 addition to unbiased de novo detection of canonical junctions, STAR can
 discover non-canonical splices and chimeric (fusion) transcripts, and is
 also capable of mapping full-length RNA sequences. Using Roche 454
 sequencing of reverse transcription polymerase chain reaction amplicons,
 the authors experimentally validated 1960 novel intergenic splice
 junctions with an 80-90% success rate, corroborating the high precision
 of the STAR mapping strategy.

rna-star-dbgsym: debug symbols for rna-star