RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1059469-2317286', '/home/buildd/filecache-default/0cd25c15e7985ed6583e6e43dffeab325119abb1'] Synching the system clock with the buildd NTP service... 6 Jun 10:45:02 ntpdate[26453]: adjust time server 10.211.37.1 offset -0.004597 sec Unpacking chroot for build 1059469-2317286 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1059469-2317286'] Mounting chroot for build 1059469-2317286 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1059469-2317286', 'universe'] Attempting OGRE for universe in build-1059469-2317286 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1059469-2317286', 'deb http://ftpmaster.internal/ubuntu karmic main universe'] Overriding sources.list in build-1059469-2317286 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1059469-2317286'] Updating debian chroot for build 1059469-2317286 Get:1 http://ftpmaster.internal karmic Release.gpg [189B] Get:2 http://ftpmaster.internal karmic Release [74.6kB] Ign http://ftpmaster.internal karmic/main Packages/DiffIndex Get:3 http://ftpmaster.internal karmic/universe Packages [4765kB] Get:4 http://ftpmaster.internal karmic/main Packages [1253kB] Fetched 6093kB in 16s (379kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils bsdutils coreutils cpp-4.4 diff e2fslibs e2fsprogs fakeroot findutils g++-4.4 gcc-4.4 gcc-4.4-base gpgv libblkid1 libc6 libc6-dev libcomerr2 libgcc1 libgmp3c2 libgmpxx4ldbl libgomp1 libmpfr1ldbl libncurses5 libppl-c2 libppl7 libss2 libstdc++6 libstdc++6-4.4-dev libuuid1 linux-libc-dev login lsb-base mktemp mount ncurses-base ncurses-bin passwd perl perl-base perl-modules sed tzdata util-linux 44 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/39.6MB of archives. After this operation, 729kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files coreutils diff e2fsprogs findutils login mktemp mount ncurses-bin perl-modules linux-libc-dev libc6-dev libgomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 libgmp3c2 libgmpxx4ldbl libmpfr1ldbl libppl-c2 libppl7 binutils libc6 perl perl-base sed lsb-base tzdata util-linux bsdutils libncurses5 ncurses-base libcomerr2 e2fslibs passwd libuuid1 libblkid1 libss2 gpgv fakeroot Extracting templates from packages: 68% Extracting templates from packages: 100% Preconfiguring packages ... Authentication warning overridden. (Reading database ... 9144 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu1 (using .../base-files_5.0.0ubuntu2_armel.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu2) ... Installing new version of config file /etc/dpkg/origins/ubuntu ... (Reading database ... 9144 files and directories currently installed.) Preparing to replace coreutils 7.3-1 (using .../coreutils_7.4-2_armel.deb) ... Unpacking replacement coreutils ... Replacing files in old package mktemp ... Setting up coreutils (7.4-2) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace diff 2.8.1-12ubuntu1 (using .../diff_2.8.1-13_armel.deb) ... Unpacking replacement diff ... Setting up diff (2.8.1-13) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.5-1ubuntu1 (using .../e2fsprogs_1.41.5-1ubuntu3_armel.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.5-1ubuntu3) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace findutils 4.4.1-1ubuntu2 (using .../findutils_4.4.1-1ubuntu3_armel.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.1-1ubuntu3) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace login 1:4.1.3.1-1ubuntu1 (using .../login_1%3a4.1.4.1-1ubuntu1_armel.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.1-1ubuntu1) ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/securetty ... Installing new version of config file /etc/login.defs ... (Reading database ... 9145 files and directories currently installed.) Preparing to replace mktemp 1.6-4 (using .../archives/mktemp_7.4-2_all.deb) ... Unpacking replacement mktemp ... Setting up mktemp (7.4-2) ... (Reading database ... 9145 files and directories currently installed.) Preparing to replace mount 2.15~rc2-1ubuntu1 (using .../mount_2.15.1~rc1-1ubuntu2_armel.deb) ... Unpacking replacement mount ... Setting up mount (2.15.1~rc1-1ubuntu2) ... (Reading database ... 9145 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20090411-1ubuntu1 (using .../ncurses-bin_5.7+20090523-1ubuntu1_armel.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.7+20090523-1ubuntu1) ... (Reading database ... 9145 files and directories currently installed.) Preparing to replace perl-modules 5.10.0-19ubuntu1 (using .../perl-modules_5.10.0-22ubuntu1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace linux-libc-dev 2.6.30-4.5 (using .../linux-libc-dev_2.6.30-8.9_armel.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libc6-dev 2.9-9ubuntu1 (using .../libc6-dev_2.9-9ubuntu2_armel.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libgomp1 4.4.0-3ubuntu3 (using .../libgomp1_4.4.0-5ubuntu1_armel.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.4 4.4.0-3ubuntu3 (using .../cpp-4.4_4.4.0-5ubuntu1_armel.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.0-3ubuntu3 (using .../gcc-4.4-base_4.4.0-5ubuntu1_armel.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.0-5ubuntu1) ... (Reading database ... 9145 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.0-3ubuntu3 (using .../libgcc1_1%3a4.4.0-5ubuntu1_armel.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.0-5ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9145 files and directories currently installed.) Preparing to replace gcc-4.4 4.4.0-3ubuntu3 (using .../gcc-4.4_4.4.0-5ubuntu1_armel.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.0-3ubuntu3 (using .../g++-4.4_4.4.0-5ubuntu1_armel.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.0-3ubuntu3 (using .../libstdc++6-4.4-dev_4.4.0-5ubuntu1_armel.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libstdc++6 4.4.0-3ubuntu3 (using .../libstdc++6_4.4.0-5ubuntu1_armel.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.0-5ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9145 files and directories currently installed.) Preparing to replace libgmp3c2 2:4.2.4+dfsg-2ubuntu1 (using .../libgmp3c2_2%3a4.3.1+dfsg-1ubuntu2_armel.deb) ... Unpacking replacement libgmp3c2 ... Preparing to replace libgmpxx4ldbl 2:4.2.4+dfsg-2ubuntu1 (using .../libgmpxx4ldbl_2%3a4.3.1+dfsg-1ubuntu2_armel.deb) ... Unpacking replacement libgmpxx4ldbl ... Preparing to replace libmpfr1ldbl 2.4.0-1ubuntu3 (using .../libmpfr1ldbl_2.4.1-1ubuntu1_armel.deb) ... Unpacking replacement libmpfr1ldbl ... Preparing to replace libppl-c2 0.10.1~pre13-1 (using .../libppl-c2_0.10.2-2_armel.deb) ... Unpacking replacement libppl-c2 ... Preparing to replace libppl7 0.10.1~pre13-1 (using .../libppl7_0.10.2-2_armel.deb) ... Unpacking replacement libppl7 ... Preparing to replace binutils 2.19.51.20090423-0ubuntu2 (using .../binutils_2.19.51.20090515-0ubuntu1_armel.deb) ... Unpacking replacement binutils ... Preparing to replace libc6 2.9-9ubuntu1 (using .../libc6_2.9-9ubuntu2_armel.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.9-9ubuntu2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9143 files and directories currently installed.) Preparing to replace perl 5.10.0-19ubuntu1 (using .../perl_5.10.0-22ubuntu1_armel.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.10.0-19ubuntu1 (using .../perl-base_5.10.0-22ubuntu1_armel.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.10.0-22ubuntu1) ... (Reading database ... 9148 files and directories currently installed.) Preparing to replace sed 4.1.5-8 (using .../archives/sed_4.2-1_armel.deb) ... Unpacking replacement sed ... Setting up sed (4.2-1) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace lsb-base 3.2-20ubuntu4 (using .../lsb-base_4.0-0ubuntu1_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.0-0ubuntu1) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace tzdata 2009g-1ubuntu1 (using .../tzdata_2009h-1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2009h-1) ... Current default timezone: 'Etc/UTC' Local time is now: Sat Jun 6 09:46:27 UTC 2009. Universal Time is now: Sat Jun 6 09:46:27 UTC 2009. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 9146 files and directories currently installed.) Preparing to replace util-linux 2.15~rc2-1ubuntu1 (using .../util-linux_2.15.1~rc1-1ubuntu2_armel.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.15.1~rc1-1ubuntu2) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace bsdutils 1:2.15~rc2-1ubuntu1 (using .../bsdutils_1%3a2.15.1~rc1-1ubuntu2_armel.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.15.1~rc1-1ubuntu2) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace libncurses5 5.7+20090411-1ubuntu1 (using .../libncurses5_5.7+20090523-1ubuntu1_armel.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.7+20090523-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9146 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20090411-1ubuntu1 (using .../ncurses-base_5.7+20090523-1ubuntu1_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.7+20090523-1ubuntu1) ... (Reading database ... 9146 files and directories currently installed.) Preparing to replace libcomerr2 1.41.5-1ubuntu1 (using .../libcomerr2_1.41.5-1ubuntu3_armel.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9146 files and directories currently installed.) Preparing to replace e2fslibs 1.41.5-1ubuntu1 (using .../e2fslibs_1.41.5-1ubuntu3_armel.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9146 files and directories currently installed.) Preparing to replace passwd 1:4.1.3.1-1ubuntu1 (using .../passwd_1%3a4.1.4.1-1ubuntu1_armel.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.4.1-1ubuntu1) ... (Reading database ... 9147 files and directories currently installed.) Preparing to replace libuuid1 1.41.5-1ubuntu1 (using .../libuuid1_1.41.5-1ubuntu3_armel.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9147 files and directories currently installed.) Preparing to replace libblkid1 2.15~rc2-1ubuntu1 (using .../libblkid1_2.15.1~rc1-1ubuntu2_armel.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.15.1~rc1-1ubuntu2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9147 files and directories currently installed.) Preparing to replace libss2 1.41.5-1ubuntu1 (using .../libss2_1.41.5-1ubuntu3_armel.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9147 files and directories currently installed.) Preparing to replace gpgv 1.4.9-4ubuntu1 (using .../gpgv_1.4.9-4ubuntu3_armel.deb) ... Unpacking replacement gpgv ... Preparing to replace fakeroot 1.12.1ubuntu1 (using .../fakeroot_1.12.2ubuntu1_armel.deb) ... Unpacking replacement fakeroot ... Setting up linux-libc-dev (2.6.30-8.9) ... Setting up libc6-dev (2.9-9ubuntu2) ... Setting up libgomp1 (4.4.0-5ubuntu1) ... Setting up libgmp3c2 (2:4.3.1+dfsg-1ubuntu2) ... Setting up libgmpxx4ldbl (2:4.3.1+dfsg-1ubuntu2) ... Setting up libmpfr1ldbl (2.4.1-1ubuntu1) ... Setting up libppl7 (0.10.2-2) ... Setting up libppl-c2 (0.10.2-2) ... Setting up cpp-4.4 (4.4.0-5ubuntu1) ... Setting up binutils (2.19.51.20090515-0ubuntu1) ... Setting up gcc-4.4 (4.4.0-5ubuntu1) ... Setting up gpgv (1.4.9-4ubuntu3) ... Setting up fakeroot (1.12.2ubuntu1) ... Setting up perl-modules (5.10.0-22ubuntu1) ... Setting up g++-4.4 (4.4.0-5ubuntu1) ... Setting up perl (5.10.0-22ubuntu1) ... Setting up libstdc++6-4.4-dev (4.4.0-5ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1059469-2317286', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=karmic', '--comp=universe', 'rnahybrid_2.1-2.dsc'] Initiating build Automatic build of rnahybrid_2.1-2 on nageia by sbuild/armel 1.170.5 Build started at 20090606-1046 ****************************************************************************** rnahybrid_2.1-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), autotools-dev, libg2-dev Checking for already installed source dependencies... debhelper: missing autotools-dev: missing libg2-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev libg2-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils ca-certificates curl file gettext gettext-base groff-base html2text intltool-debian libcroco3 libcurl3 libg20 libgcrypt11 libglib2.0-0 libglib2.0-data libgnutls26 libgpg-error0 libgssapi-krb5-2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmail-sendmail-perl libsasl2-2 libsasl2-modules libssl0.9.8 libsys-hostname-long-perl libtasn1-3 libxml2 man-db openssl po-debconf sgml-base shared-mime-info xml-core Suggested packages: wamerican wordlist whois vacation dh-make cvs gettext-doc groff rng-tools gnutls-bin krb5-doc krb5-user libsasl2-modules-otp libsasl2-modules-ldap libsasl2-modules-sql libsasl2-modules-gssapi-mit libsasl2-modules-gssapi-heimdal less www-browser openssl-doc libmail-box-perl sgml-base-doc The following NEW packages will be installed: autotools-dev bsdmainutils ca-certificates curl debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libcurl3 libg2-dev libg20 libgcrypt11 libglib2.0-0 libglib2.0-data libgnutls26 libgpg-error0 libgssapi-krb5-2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmail-sendmail-perl libsasl2-2 libsasl2-modules libssl0.9.8 libsys-hostname-long-perl libtasn1-3 libxml2 man-db openssl po-debconf sgml-base shared-mime-info xml-core 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 358kB/11.9MB of archives. After this operation, 41.8MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libssl0.9.8 openssl ca-certificates libmagic1 file libgpg-error0 libgcrypt11 libtasn1-3 libgnutls26 libkeyutils1 libkrb5support0 libk5crypto3 libkrb5-3 libgssapi-krb5-2 libidn11 libsasl2-modules libsasl2-2 libldap-2.4-2 bsdmainutils gettext-base groff-base libxml2 man-db sgml-base xml-core autotools-dev libcurl3 curl html2text libglib2.0-0 libcroco3 gettext intltool-debian po-debconf debhelper libg20 libg2-dev libglib2.0-data libsys-hostname-long-perl libmail-sendmail-perl shared-mime-info Authentication warning overridden. Get:1 http://ftpmaster.internal karmic/universe libg20 0.72-1 [51.0kB] Get:2 http://ftpmaster.internal karmic/universe libg2-dev 0.72-1 [307kB] dpkg-preconfigure: unable to re-open stdin: Fetched 358kB in 0s (4087kB/s) Selecting previously deselected package libssl0.9.8. (Reading database ... 9147 files and directories currently installed.) Unpacking libssl0.9.8 (from .../libssl0.9.8_0.9.8g-16ubuntu1_armel.deb) ... Selecting previously deselected package openssl. Unpacking openssl (from .../openssl_0.9.8g-16ubuntu1_armel.deb) ... Selecting previously deselected package ca-certificates. Unpacking ca-certificates (from .../ca-certificates_20081127_all.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.03-1ubuntu1_armel.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.03-1ubuntu1_armel.deb) ... Selecting previously deselected package libgpg-error0. Unpacking libgpg-error0 (from .../libgpg-error0_1.6-1ubuntu1_armel.deb) ... Selecting previously deselected package libgcrypt11. Unpacking libgcrypt11 (from .../libgcrypt11_1.4.4-2ubuntu1_armel.deb) ... Selecting previously deselected package libtasn1-3. Unpacking libtasn1-3 (from .../libtasn1-3_2.2-1_armel.deb) ... Selecting previously deselected package libgnutls26. Unpacking libgnutls26 (from .../libgnutls26_2.6.6-1_armel.deb) ... Selecting previously deselected package libkeyutils1. Unpacking libkeyutils1 (from .../libkeyutils1_1.2-10_armel.deb) ... Selecting previously deselected package libkrb5support0. Unpacking libkrb5support0 (from .../libkrb5support0_1.7dfsg~beta3-1_armel.deb) ... Selecting previously deselected package libk5crypto3. Unpacking libk5crypto3 (from .../libk5crypto3_1.7dfsg~beta3-1_armel.deb) ... Selecting previously deselected package libkrb5-3. Unpacking libkrb5-3 (from .../libkrb5-3_1.7dfsg~beta3-1_armel.deb) ... Selecting previously deselected package libgssapi-krb5-2. Unpacking libgssapi-krb5-2 (from .../libgssapi-krb5-2_1.7dfsg~beta3-1_armel.deb) ... Selecting previously deselected package libidn11. Unpacking libidn11 (from .../libidn11_1.14-3_armel.deb) ... Selecting previously deselected package libsasl2-modules. Unpacking libsasl2-modules (from .../libsasl2-modules_2.1.23.dfsg1-1ubuntu1_armel.deb) ... Selecting previously deselected package libsasl2-2. Unpacking libsasl2-2 (from .../libsasl2-2_2.1.23.dfsg1-1ubuntu1_armel.deb) ... Selecting previously deselected package libldap-2.4-2. Unpacking libldap-2.4-2 (from .../libldap-2.4-2_2.4.15-1ubuntu3_armel.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu4_armel.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-6ubuntu2_armel.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-22build1_armel.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.6.32.dfsg-5ubuntu4_armel.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.5-2_armel.deb) ... Selecting previously deselected package sgml-base. Unpacking sgml-base (from .../sgml-base_1.26_all.deb) ... Selecting previously deselected package xml-core. Unpacking xml-core (from .../archives/xml-core_0.12_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20090427.1_all.deb) ... Selecting previously deselected package libcurl3. Unpacking libcurl3 (from .../libcurl3_7.19.5-1ubuntu1_armel.deb) ... Selecting previously deselected package curl. Unpacking curl (from .../curl_7.19.5-1ubuntu1_armel.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14_armel.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.21.1-0ubuntu1_armel.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.1-2_armel.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-6ubuntu2_armel.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.2.14ubuntu1_all.deb) ... Selecting previously deselected package libg20. Unpacking libg20 (from .../libg20_0.72-1_armel.deb) ... Selecting previously deselected package libg2-dev. Unpacking libg2-dev (from .../libg2-dev_0.72-1_armel.deb) ... Selecting previously deselected package libglib2.0-data. Unpacking libglib2.0-data (from .../libglib2.0-data_2.21.1-0ubuntu1_all.deb) ... Selecting previously deselected package libsys-hostname-long-perl. Unpacking libsys-hostname-long-perl (from .../libsys-hostname-long-perl_1.4-2_all.deb) ... Selecting previously deselected package libmail-sendmail-perl. Unpacking libmail-sendmail-perl (from .../libmail-sendmail-perl_0.79.16-1_all.deb) ... Selecting previously deselected package shared-mime-info. Unpacking shared-mime-info (from .../shared-mime-info_0.60-2_armel.deb) ... Setting up libssl0.9.8 (0.9.8g-16ubuntu1) ... Setting up openssl (0.9.8g-16ubuntu1) ... Setting up ca-certificates (20081127) ... Updating certificates in /etc/ssl/certs....done. Running hooks in /etc/ca-certificates/update.d....done. Setting up libmagic1 (5.03-1ubuntu1) ... Setting up file (5.03-1ubuntu1) ... Setting up libgpg-error0 (1.6-1ubuntu1) ... Setting up libgcrypt11 (1.4.4-2ubuntu1) ... Setting up libtasn1-3 (2.2-1) ... Setting up libgnutls26 (2.6.6-1) ... Setting up libkeyutils1 (1.2-10) ... Setting up libkrb5support0 (1.7dfsg~beta3-1) ... Setting up libk5crypto3 (1.7dfsg~beta3-1) ... Setting up libkrb5-3 (1.7dfsg~beta3-1) ... Setting up libgssapi-krb5-2 (1.7dfsg~beta3-1) ... Setting up libidn11 (1.14-3) ... Setting up bsdmainutils (6.1.10ubuntu4) ... Setting up gettext-base (0.17-6ubuntu2) ... Setting up groff-base (1.18.1.1-22build1) ... Setting up libxml2 (2.6.32.dfsg-5ubuntu4) ... Setting up man-db (2.5.5-2) ... Building database of manual pages ... ... skipping, since this is a buildd Setting up sgml-base (1.26) ... Setting up xml-core (0.12) ... Setting up autotools-dev (20090427.1) ... Setting up html2text (1.3.2a-14) ... Setting up libglib2.0-0 (2.21.1-0ubuntu1) ... Setting up libcroco3 (0.6.1-2) ... Setting up gettext (0.17-6ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.2.14ubuntu1) ... Setting up libg20 (0.72-1) ... Setting up libg2-dev (0.72-1) ... Setting up libglib2.0-data (2.21.1-0ubuntu1) ... Setting up libsys-hostname-long-perl (1.4-2) ... Setting up libmail-sendmail-perl (0.79.16-1) ... Setting up shared-mime-info (0.60-2) ... Setting up libsasl2-modules (2.1.23.dfsg1-1ubuntu1) ... Setting up libsasl2-2 (2.1.23.dfsg1-1ubuntu1) ... Setting up libldap-2.4-2 (2.4.15-1ubuntu3) ... Setting up libcurl3 (7.19.5-1ubuntu1) ... Setting up curl (7.19.5-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.9-9ubuntu2 make_3.81-5 dpkg-dev_1.14.24ubuntu2 g++-4.4_4.4.0-5ubuntu1 gcc-4.4_4.4.0-5ubuntu1 binutils_2.19.51.20090515-0ubuntu1 libstdc++6_4.4.0-5ubuntu1 libstdc++6-4.4-dev_4.4.0-5ubuntu1 ------------------------------------------------------------------------------ sh: gcc: command not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Mon Jun 1 22:17:09 2009 BST using DSA key ID C09FD35A gpg: Can't check signature: public key not found dpkg-source: extracting rnahybrid in rnahybrid-2.1 dpkg-source: info: unpacking rnahybrid_2.1.orig.tar.gz dpkg-source: info: applying rnahybrid_2.1-2.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package rnahybrid dpkg-buildpackage: source version 2.1-2 dpkg-buildpackage: host architecture armel /usr/bin/fakeroot debian/rules clean dh_testdir cp -f /usr/share/misc/config.sub config.sub cp -f /usr/share/misc/config.guess config.guess ./configure --host=arm-linux-gnueabi\ --build=arm-linux-gnueabi\ --prefix=/usr\ --mandir=\${prefix}/share/man\ CFLAGS="-Wall -g -O2"\ LDFLAGS="-Wl,-z,defs" checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of arm-linux-gnueabi-gcc... gcc3 checking for log in -lm... yes checking for g2_open_vd in -lg2... no configure: WARNING: libg2.a is missing. You can download it at http://g2.sourceforge.net/ checking for gdImageLine in -lgd... no checking how to run the C preprocessor... arm-linux-gnueabi-gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking g2.h usability... yes checking g2.h presence... yes checking for g2.h... yes checking g2_PS.h usability... yes checking g2_PS.h presence... yes checking for g2_PS.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands dh_testdir dh_testroot rm -f build-stamp /usr/bin/make distclean make[1]: Entering directory `/build/buildd/rnahybrid-2.1' Making distclean in man make[2]: Entering directory `/build/buildd/rnahybrid-2.1/man' rm -f Makefile make[2]: Leaving directory `/build/buildd/rnahybrid-2.1/man' Making distclean in src make[2]: Entering directory `/build/buildd/rnahybrid-2.1/src' test -z "RNAhybrid RNAcalibrate RNAeffective" || rm -f RNAhybrid RNAcalibrate RNAeffective rm -f *.o core *.core rm -f *.tab.c rm -rf ./.deps rm -f Makefile rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags make[2]: Leaving directory `/build/buildd/rnahybrid-2.1/src' Making distclean in . make[2]: Entering directory `/build/buildd/rnahybrid-2.1' rm -f Makefile rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags make[2]: Leaving directory `/build/buildd/rnahybrid-2.1' rm -f config.status config.cache config.log configure.lineno make[1]: Leaving directory `/build/buildd/rnahybrid-2.1' dh_clean config.sub config.guess debian/rules build dh_testdir cp -f /usr/share/misc/config.sub config.sub cp -f /usr/share/misc/config.guess config.guess ./configure --host=arm-linux-gnueabi\ --build=arm-linux-gnueabi\ --prefix=/usr\ --mandir=\${prefix}/share/man\ CFLAGS="-Wall -g -O2"\ LDFLAGS="-Wl,-z,defs" checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of arm-linux-gnueabi-gcc... gcc3 checking for log in -lm... yes checking for g2_open_vd in -lg2... no configure: WARNING: libg2.a is missing. You can download it at http://g2.sourceforge.net/ checking for gdImageLine in -lgd... no checking how to run the C preprocessor... arm-linux-gnueabi-gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking g2.h usability... yes checking g2.h presence... yes checking for g2.h... yes checking g2_PS.h usability... yes checking g2_PS.h presence... yes checking for g2_PS.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands dh_testdir /usr/bin/make make[1]: Entering directory `/build/buildd/rnahybrid-2.1' /usr/bin/make all-recursive make[2]: Entering directory `/build/buildd/rnahybrid-2.1' Making all in src make[3]: Entering directory `/build/buildd/rnahybrid-2.1/src' if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT rnahybrid.o -MD -MP -MF ".deps/rnahybrid.Tpo" \ -c -o rnahybrid.o `test -f 'rnahybrid.c' || echo './'`rnahybrid.c; \ then mv ".deps/rnahybrid.Tpo" ".deps/rnahybrid.Po"; \ else rm -f ".deps/rnahybrid.Tpo"; exit 1; \ fi rnahybrid.c: In function 'main': rnahybrid.c:90: warning: implicit declaration of function 'getopt' rnahybrid.c:185: warning: suggest parentheses around '&&' within '||' rnahybrid.c:280: warning: implicit declaration of function 'tableAlloc' rnahybrid.c:74: warning: unused variable 'plotfileextension' rnahybrid.c:32: warning: unused variable 'optind' rnahybrid.c: In function 'maximal_duplex_energy': rnahybrid.c:485: warning: array subscript has type 'char' rnahybrid.c:485: warning: array subscript has type 'char' rnahybrid.c:485: warning: array subscript has type 'char' rnahybrid.c:485: warning: array subscript has type 'char' rnahybrid.c:455: warning: unused variable 'compl_letter' rnahybrid.c:455: warning: unused variable 'letter' rnahybrid.c: In function 'main': rnahybrid.c:359: warning: 'plot_format' may be used uninitialized in this function rnahybrid.c:56: warning: 'target_fn' may be used uninitialized in this function rnahybrid.c:57: warning: 'query_fn' may be used uninitialized in this function rnahybrid.c:76: warning: 'setname' may be used uninitialized in this function rnahybrid.c:87: warning: 'xi_slope' may be used uninitialized in this function rnahybrid.c:87: warning: 'xi_intercept' may be used uninitialized in this function rnahybrid.c:87: warning: 'theta_slope' may be used uninitialized in this function rnahybrid.c:87: warning: 'theta_intercept' may be used uninitialized in this function rnahybrid.c:70: warning: 'target_sq' may be used uninitialized in this function rnahybrid.c:71: warning: 'query_sq' may be used uninitialized in this function rnahybrid.c:79: warning: 'targetlength' may be used uninitialized in this function rnahybrid.c:80: warning: 'querylength' may be used uninitialized in this function if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT hybrid_core.o -MD -MP -MF ".deps/hybrid_core.Tpo" \ -c -o hybrid_core.o `test -f 'hybrid_core.c' || echo './'`hybrid_core.c; \ then mv ".deps/hybrid_core.Tpo" ".deps/hybrid_core.Po"; \ else rm -f ".deps/hybrid_core.Tpo"; exit 1; \ fi hybrid_core.c: In function 'free_str_Hybrid': hybrid_core.c:670: warning: unused variable 'l2' hybrid_core.c: In function 'build_str_Hybrid': hybrid_core.c:738: warning: unused variable 'l' hybrid_core.c: In function 'calc_unpaired_left_bot': hybrid_core.c:886: warning: array subscript has type 'char' hybrid_core.c:886: warning: array subscript has type 'char' hybrid_core.c:898: warning: array subscript has type 'char' hybrid_core.c:898: warning: array subscript has type 'char' hybrid_core.c:910: warning: array subscript has type 'char' hybrid_core.c:910: warning: array subscript has type 'char' hybrid_core.c: In function 'calc_closed': hybrid_core.c:943: warning: array subscript has type 'char' hybrid_core.c:943: warning: array subscript has type 'char' hybrid_core.c:959: warning: array subscript has type 'char' hybrid_core.c:959: warning: array subscript has type 'char' hybrid_core.c:977: warning: array subscript has type 'char' hybrid_core.c:977: warning: array subscript has type 'char' hybrid_core.c:996: warning: array subscript has type 'char' hybrid_core.c:996: warning: array subscript has type 'char' hybrid_core.c:1005: warning: array subscript has type 'char' hybrid_core.c:1005: warning: array subscript has type 'char' hybrid_core.c:1022: warning: array subscript has type 'char' hybrid_core.c:1022: warning: array subscript has type 'char' hybrid_core.c:1023: warning: array subscript has type 'char' hybrid_core.c:1023: warning: array subscript has type 'char' hybrid_core.c:1023: warning: array subscript has type 'char' hybrid_core.c:1023: warning: array subscript has type 'char' hybrid_core.c:1030: warning: array subscript has type 'char' hybrid_core.c:1030: warning: array subscript has type 'char' hybrid_core.c:1030: warning: array subscript has type 'char' hybrid_core.c:1030: warning: array subscript has type 'char' hybrid_core.c:1040: warning: array subscript has type 'char' hybrid_core.c:1040: warning: array subscript has type 'char' hybrid_core.c:1041: warning: array subscript has type 'char' hybrid_core.c:1041: warning: array subscript has type 'char' hybrid_core.c:1041: warning: array subscript has type 'char' hybrid_core.c:1041: warning: array subscript has type 'char' hybrid_core.c:1048: warning: array subscript has type 'char' hybrid_core.c:1048: warning: array subscript has type 'char' hybrid_core.c:1048: warning: array subscript has type 'char' hybrid_core.c:1048: warning: array subscript has type 'char' hybrid_core.c:1058: warning: array subscript has type 'char' hybrid_core.c:1058: warning: array subscript has type 'char' hybrid_core.c:1059: warning: array subscript has type 'char' hybrid_core.c:1059: warning: array subscript has type 'char' hybrid_core.c:1059: warning: array subscript has type 'char' hybrid_core.c:1059: warning: array subscript has type 'char' hybrid_core.c:1066: warning: array subscript has type 'char' hybrid_core.c:1066: warning: array subscript has type 'char' hybrid_core.c:1066: warning: array subscript has type 'char' hybrid_core.c:1066: warning: array subscript has type 'char' hybrid_core.c:1085: warning: array subscript has type 'char' hybrid_core.c:1085: warning: array subscript has type 'char' hybrid_core.c: In function 'back_unpaired_left_bot': hybrid_core.c:1263: warning: array subscript has type 'char' hybrid_core.c:1263: warning: array subscript has type 'char' hybrid_core.c:1277: warning: array subscript has type 'char' hybrid_core.c:1277: warning: array subscript has type 'char' hybrid_core.c:1291: warning: array subscript has type 'char' hybrid_core.c:1291: warning: array subscript has type 'char' hybrid_core.c: In function 'back_closed': hybrid_core.c:1352: warning: array subscript has type 'char' hybrid_core.c:1352: warning: array subscript has type 'char' hybrid_core.c:1371: warning: array subscript has type 'char' hybrid_core.c:1371: warning: array subscript has type 'char' hybrid_core.c:1396: warning: array subscript has type 'char' hybrid_core.c:1396: warning: array subscript has type 'char' hybrid_core.c:1422: warning: array subscript has type 'char' hybrid_core.c:1422: warning: array subscript has type 'char' hybrid_core.c:1433: warning: array subscript has type 'char' hybrid_core.c:1433: warning: array subscript has type 'char' hybrid_core.c:1457: warning: array subscript has type 'char' hybrid_core.c:1457: warning: array subscript has type 'char' hybrid_core.c:1458: warning: array subscript has type 'char' hybrid_core.c:1458: warning: array subscript has type 'char' hybrid_core.c:1458: warning: array subscript has type 'char' hybrid_core.c:1458: warning: array subscript has type 'char' hybrid_core.c:1469: warning: array subscript has type 'char' hybrid_core.c:1469: warning: array subscript has type 'char' hybrid_core.c:1469: warning: array subscript has type 'char' hybrid_core.c:1469: warning: array subscript has type 'char' hybrid_core.c:1481: warning: array subscript has type 'char' hybrid_core.c:1481: warning: array subscript has type 'char' hybrid_core.c:1482: warning: array subscript has type 'char' hybrid_core.c:1482: warning: array subscript has type 'char' hybrid_core.c:1482: warning: array subscript has type 'char' hybrid_core.c:1482: warning: array subscript has type 'char' hybrid_core.c:1493: warning: array subscript has type 'char' hybrid_core.c:1493: warning: array subscript has type 'char' hybrid_core.c:1493: warning: array subscript has type 'char' hybrid_core.c:1493: warning: array subscript has type 'char' hybrid_core.c:1507: warning: array subscript has type 'char' hybrid_core.c:1507: warning: array subscript has type 'char' hybrid_core.c:1508: warning: array subscript has type 'char' hybrid_core.c:1508: warning: array subscript has type 'char' hybrid_core.c:1508: warning: array subscript has type 'char' hybrid_core.c:1508: warning: array subscript has type 'char' hybrid_core.c:1519: warning: array subscript has type 'char' hybrid_core.c:1519: warning: array subscript has type 'char' hybrid_core.c:1519: warning: array subscript has type 'char' hybrid_core.c:1519: warning: array subscript has type 'char' hybrid_core.c:1567: warning: array subscript has type 'char' hybrid_core.c:1567: warning: array subscript has type 'char' hybrid_core.c: In function 'tableAlloc': hybrid_core.c:1639: warning: unused variable 'k' hybrid_core.c:1639: warning: unused variable 'j' hybrid_core.c: In function 'back_hybrid': hybrid_core.c:1129: warning: 'best_k' may be used uninitialized in this function hybrid_core.c: In function 'calc_closed': hybrid_core.c:934: warning: 'v7d' may be used uninitialized in this function if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT energy.o -MD -MP -MF ".deps/energy.Tpo" \ -c -o energy.o `test -f 'energy.c' || echo './'`energy.c; \ then mv ".deps/energy.Tpo" ".deps/energy.Po"; \ else rm -f ".deps/energy.Tpo"; exit 1; \ fi energy.c: In function 'sr_energy': energy.c:33: warning: array subscript has type 'char' energy.c:33: warning: array subscript has type 'char' energy.c:33: warning: array subscript has type 'char' energy.c:33: warning: array subscript has type 'char' energy.c: In function 'dr_energy': energy.c:38: warning: array subscript has type 'char' energy.c:38: warning: array subscript has type 'char' energy.c:38: warning: array subscript has type 'char' energy.c: In function 'dli_energy': energy.c:42: warning: array subscript has type 'char' energy.c:42: warning: array subscript has type 'char' energy.c:42: warning: array subscript has type 'char' energy.c: In function 'dl_energy': energy.c:46: warning: array subscript has type 'char' energy.c:46: warning: array subscript has type 'char' energy.c:46: warning: array subscript has type 'char' energy.c: In function 'dri_energy': energy.c:50: warning: array subscript has type 'char' energy.c:50: warning: array subscript has type 'char' energy.c:50: warning: array subscript has type 'char' energy.c: In function 'bl_stacking': energy.c:98: warning: array subscript has type 'char' energy.c:98: warning: array subscript has type 'char' energy.c:98: warning: array subscript has type 'char' energy.c:98: warning: array subscript has type 'char' energy.c:99: warning: array subscript has type 'char' energy.c:99: warning: array subscript has type 'char' energy.c:99: warning: array subscript has type 'char' energy.c:99: warning: array subscript has type 'char' energy.c: In function 'int_special': energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:112: warning: control reaches end of non-void function if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT input.o -MD -MP -MF ".deps/input.Tpo" \ -c -o input.o `test -f 'input.c' || echo './'`input.c; \ then mv ".deps/input.Tpo" ".deps/input.Po"; \ else rm -f ".deps/input.Tpo"; exit 1; \ fi if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT fasta.o -MD -MP -MF ".deps/fasta.Tpo" \ -c -o fasta.o `test -f 'fasta.c' || echo './'`fasta.c; \ then mv ".deps/fasta.Tpo" ".deps/fasta.Po"; \ else rm -f ".deps/fasta.Tpo"; exit 1; \ fi fasta.c: In function 'nextAC': fasta.c:22: warning: implicit declaration of function 'exit' fasta.c:22: warning: incompatible implicit declaration of built-in function 'exit' fasta.c: In function 'nextSQ': fasta.c:63: warning: incompatible implicit declaration of built-in function 'exit' fasta.c:31: warning: unused variable 's' if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT plot.o -MD -MP -MF ".deps/plot.Tpo" \ -c -o plot.o `test -f 'plot.c' || echo './'`plot.c; \ then mv ".deps/plot.Tpo" ".deps/plot.Po"; \ else rm -f ".deps/plot.Tpo"; exit 1; \ fi arm-linux-gnueabi-gcc -Wall -g -O2 -Wl,-z,defs -o RNAhybrid rnahybrid.o hybrid_core.o energy.o input.o fasta.o plot.o -lm if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT rnacalibrate.o -MD -MP -MF ".deps/rnacalibrate.Tpo" \ -c -o rnacalibrate.o `test -f 'rnacalibrate.c' || echo './'`rnacalibrate.c; \ then mv ".deps/rnacalibrate.Tpo" ".deps/rnacalibrate.Po"; \ else rm -f ".deps/rnacalibrate.Tpo"; exit 1; \ fi rnacalibrate.c: In function 'main': rnacalibrate.c:109: warning: implicit declaration of function 'getopt' rnacalibrate.c:162: warning: suggest parentheses around '&&' within '||' rnacalibrate.c:199: warning: implicit declaration of function 'strlen' rnacalibrate.c:199: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:200: warning: implicit declaration of function 'strcpy' rnacalibrate.c:200: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:202: warning: implicit declaration of function 'remove_whitespace' rnacalibrate.c:212: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:213: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:235: warning: implicit declaration of function 'end' rnacalibrate.c:237: warning: implicit declaration of function 'nextAC' rnacalibrate.c:238: warning: implicit declaration of function 'nextSQ' rnacalibrate.c:242: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:245: warning: implicit declaration of function 'toupper' rnacalibrate.c:253: warning: implicit declaration of function 'strchr' rnacalibrate.c:253: warning: incompatible implicit declaration of built-in function 'strchr' rnacalibrate.c:268: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:279: warning: incompatible implicit declaration of built-in function 'strchr' rnacalibrate.c:300: warning: implicit declaration of function 'init_constants' rnacalibrate.c:301: warning: implicit declaration of function 'init_energies' rnacalibrate.c:303: warning: implicit declaration of function 'tableAlloc' rnacalibrate.c:315: warning: suggest parentheses around '&&' within '||' rnacalibrate.c:329: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:393: warning: implicit declaration of function 'convert_y' rnacalibrate.c:416: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:417: warning: implicit declaration of function 'strcat' rnacalibrate.c:417: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:418: warning: implicit declaration of function 'convert_x' rnacalibrate.c:443: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:458: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:459: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:485: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:500: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:501: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:528: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:576: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:577: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:601: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:615: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:616: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:641: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:653: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:654: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:679: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:35: warning: unused variable 'optind' rnacalibrate.c:56: warning: 'query_fn' may be used uninitialized in this function rnacalibrate.c:57: warning: 'target_fn' may be used uninitialized in this function rnacalibrate.c:65: warning: 'freq_filename' may be used uninitialized in this function rnacalibrate.c:62: warning: 'target_sq' may be used uninitialized in this function if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT numerical.o -MD -MP -MF ".deps/numerical.Tpo" \ -c -o numerical.o `test -f 'numerical.c' || echo './'`numerical.c; \ then mv ".deps/numerical.Tpo" ".deps/numerical.Po"; \ else rm -f ".deps/numerical.Tpo"; exit 1; \ fi numerical.c: In function 'empirical_cumulative_distribution_function': numerical.c:32: warning: implicit declaration of function 'qsort' numerical.c:36: warning: implicit declaration of function 'calloc' numerical.c:36: warning: incompatible implicit declaration of built-in function 'calloc' numerical.c: In function 'estimate_evd_parameters': numerical.c:156: warning: implicit declaration of function 'free' numerical.c:156: warning: incompatible implicit declaration of built-in function 'free' numerical.c: In function 'brent': numerical.c:289: warning: implicit declaration of function 'printf' numerical.c:289: warning: incompatible implicit declaration of built-in function 'printf' numerical.c:236: warning: 'd' may be used uninitialized in this function if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT random.o -MD -MP -MF ".deps/random.Tpo" \ -c -o random.o `test -f 'random.c' || echo './'`random.c; \ then mv ".deps/random.Tpo" ".deps/random.Po"; \ else rm -f ".deps/random.Tpo"; exit 1; \ fi random.c: In function 'read_dinucleotide_frequencies': random.c:29: warning: implicit declaration of function 'toupper' random.c:25: warning: 'i' may be used uninitialized in this function random.c:25: warning: 'j' may be used uninitialized in this function if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT mt19937-1.o -MD -MP -MF ".deps/mt19937-1.Tpo" \ -c -o mt19937-1.o `test -f 'mt19937-1.c' || echo './'`mt19937-1.c; \ then mv ".deps/mt19937-1.Tpo" ".deps/mt19937-1.Po"; \ else rm -f ".deps/mt19937-1.Tpo"; exit 1; \ fi arm-linux-gnueabi-gcc -Wall -g -O2 -Wl,-z,defs -o RNAcalibrate rnacalibrate.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lm if arm-linux-gnueabi-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT rnaeffective.o -MD -MP -MF ".deps/rnaeffective.Tpo" \ -c -o rnaeffective.o `test -f 'rnaeffective.c' || echo './'`rnaeffective.c; \ then mv ".deps/rnaeffective.Tpo" ".deps/rnaeffective.Po"; \ else rm -f ".deps/rnaeffective.Tpo"; exit 1; \ fi rnaeffective.c: In function 'main': rnaeffective.c:112: warning: implicit declaration of function 'getopt' rnaeffective.c:165: warning: suggest parentheses around '&&' within '||' rnaeffective.c:216: warning: implicit declaration of function 'strlen' rnaeffective.c:216: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:217: warning: implicit declaration of function 'strcpy' rnaeffective.c:217: warning: incompatible implicit declaration of built-in function 'strcpy' rnaeffective.c:219: warning: implicit declaration of function 'remove_whitespace' rnaeffective.c:231: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:232: warning: incompatible implicit declaration of built-in function 'strcpy' rnaeffective.c:255: warning: implicit declaration of function 'end' rnaeffective.c:257: warning: implicit declaration of function 'nextAC' rnaeffective.c:258: warning: implicit declaration of function 'nextSQ' rnaeffective.c:262: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:265: warning: implicit declaration of function 'toupper' rnaeffective.c:273: warning: implicit declaration of function 'strchr' rnaeffective.c:273: warning: incompatible implicit declaration of built-in function 'strchr' rnaeffective.c:288: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:299: warning: incompatible implicit declaration of built-in function 'strchr' rnaeffective.c:318: warning: implicit declaration of function 'init_constants' rnaeffective.c:319: warning: implicit declaration of function 'init_energies' rnaeffective.c:321: warning: implicit declaration of function 'tableAlloc' rnaeffective.c:333: warning: suggest parentheses around '&&' within '||' rnaeffective.c:346: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:412: warning: implicit declaration of function 'convert_y' rnaeffective.c:436: warning: incompatible implicit declaration of built-in function 'strcpy' rnaeffective.c:437: warning: implicit declaration of function 'strcat' rnaeffective.c:437: warning: incompatible implicit declaration of built-in function 'strcat' rnaeffective.c:438: warning: implicit declaration of function 'convert_x' rnaeffective.c:520: warning: suggest parentheses around '&&' within '||' rnaeffective.c:565: warning: incompatible implicit declaration of built-in function 'strcpy' rnaeffective.c:566: warning: incompatible implicit declaration of built-in function 'strcat' rnaeffective.c:29: warning: unused variable 'optind' rnaeffective.c:659: warning: control reaches end of non-void function rnaeffective.c:26: warning: 'l' may be used uninitialized in this function rnaeffective.c:50: warning: 'query_fn' may be used uninitialized in this function rnaeffective.c:51: warning: 'target_fn' may be used uninitialized in this function rnaeffective.c:59: warning: 'freq_filename' may be used uninitialized in this function rnaeffective.c:56: warning: 'target_sq' may be used uninitialized in this function rnaeffective.c:68: warning: 'targetlength' may be used uninitialized in this function rnaeffective.c:79: warning: 'k' may be used uninitialized in this function rnaeffective.c:89: warning: 'smallest_error_sum' may be used uninitialized in this function arm-linux-gnueabi-gcc -Wall -g -O2 -Wl,-z,defs -o RNAeffective rnaeffective.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lm make[3]: Leaving directory `/build/buildd/rnahybrid-2.1/src' Making all in man make[3]: Entering directory `/build/buildd/rnahybrid-2.1/man' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/rnahybrid-2.1/man' make[3]: Entering directory `/build/buildd/rnahybrid-2.1' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/rnahybrid-2.1' make[2]: Leaving directory `/build/buildd/rnahybrid-2.1' make[1]: Leaving directory `/build/buildd/rnahybrid-2.1' touch build-stamp /usr/bin/fakeroot debian/rules binary-arch src/RNAhybrid -s 3utr_worm -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.064406 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAcalibrate -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 12 2.030722 0.236083 src/RNAhybrid -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.052460 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAhybrid -f 2,7 -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -27.3 kcal/mol p-value: 0.070821 position 1189 target 5' C AU U C 3' CUGUAUA GCCU CUACCUC GAUAUGU UGGA GAUGGAG miRNA 3' UU U U 5' src/RNAcalibrate -f 2,7 -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 8 1.303455 0.265399 src/RNAhybrid -s 3utr_worm -t examples/cbr-hbl-1.fasta -q examples/cel-let-7.fasta target: ENSCBRT00000006770.1|ENSCBRG00000005546.1 length: 1449 miRNA : cel-let-7 length: 22 mfe: -28.3 kcal/mol p-value: 0.060792 position 1333 target 5' C GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAeffective -k 30 -s -t examples/hbl-1.fasta -q examples/cel-let-7.fasta 1.000000 0.737031 1.100000 0.441365 1.200000 0.226647 1.300000 0.129648 1.400000 0.174271 1.500000 0.218114 1.600000 0.282131 1.700000 0.423949 1.800000 0.878138 1.900000 1.045215 2.000000 1.342442 Effective number: 1.300000 make: [test] Error 27 (ignored) dh_testdir dh_testroot dh_clean -k dh_installdirs /usr/bin/make DESTDIR=/build/buildd/rnahybrid-2.1/debian/rnahybrid install make[1]: Entering directory `/build/buildd/rnahybrid-2.1' Making install in src make[2]: Entering directory `/build/buildd/rnahybrid-2.1/src' make[3]: Entering directory `/build/buildd/rnahybrid-2.1/src' /bin/bash ../mkinstalldirs /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin mkdir -p -- /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin /usr/bin/install -c RNAhybrid /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin/RNAhybrid /usr/bin/install -c RNAcalibrate /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin/RNAcalibrate /usr/bin/install -c RNAeffective /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin/RNAeffective make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/rnahybrid-2.1/src' make[2]: Leaving directory `/build/buildd/rnahybrid-2.1/src' Making install in man make[2]: Entering directory `/build/buildd/rnahybrid-2.1/man' make[3]: Entering directory `/build/buildd/rnahybrid-2.1/man' make[3]: Nothing to be done for `install-exec-am'. /bin/bash ../mkinstalldirs /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1 mkdir -p -- /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1 /usr/bin/install -c -m 644 ./RNAhybrid.1 /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1/RNAhybrid.1 /usr/bin/install -c -m 644 ./RNAcalibrate.1 /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1/RNAcalibrate.1 /usr/bin/install -c -m 644 ./RNAeffective.1 /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1/RNAeffective.1 make[3]: Leaving directory `/build/buildd/rnahybrid-2.1/man' make[2]: Leaving directory `/build/buildd/rnahybrid-2.1/man' make[2]: Entering directory `/build/buildd/rnahybrid-2.1' make[3]: Entering directory `/build/buildd/rnahybrid-2.1' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/rnahybrid-2.1' make[2]: Leaving directory `/build/buildd/rnahybrid-2.1' make[1]: Leaving directory `/build/buildd/rnahybrid-2.1' dh_testdir dh_testroot dh_installchangelogs ChangeLog dh_installdocs README dh_installexamples examples/* dh_link dh_strip dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: rnahybrid dh_strip debug symbol extraction: packages to act on: rnahybrid dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/rnahybrid-dbgsym/DEBIAN/control, package rnahybrid-dbgsym, directory ./debian/rnahybrid-dbgsym pkgstriptranslations: rnahybrid-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `/build/buildd/rnahybrid-2.1/debian/rnahybrid-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `rnahybrid-dbgsym' in `../rnahybrid-dbgsym_2.1-2_armel.ddeb'. dh_compress dh_fixperms dh_installdeb dh_shlibdeps dh_gencontrol dh_md5sums dh_builddeb pkgstriptranslations: processing control file: ./debian/rnahybrid/DEBIAN/control, package rnahybrid, directory ./debian/rnahybrid pkgstriptranslations: rnahybrid does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `debian/rnahybrid/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `rnahybrid' in `../rnahybrid_2.1-2_armel.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../rnahybrid_2.1-2_armel.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20090606-1056 Publishing debug debs. chroot-autobuild/build/buildd/rnahybrid_2.1-2_armel.deb: new debian package, version 2.0. size 382750 bytes: control archive= 1323 bytes. 961 bytes, 20 lines control 1398 bytes, 19 lines md5sums Package: rnahybrid Version: 2.1-2 Architecture: armel Maintainer: Ubuntu MOTU Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 840 Depends: libc6 (>= 2.4) Section: science Priority: optional Homepage: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html Description: Fast and effective prediction of microRNA/target duplexes RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. The short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction. . Public research assisted by RNAhybrid should cite: Marc Rehmsmeier, Peter Steffen, Matthias Höchsmann, Robert Giegerich Fast and effective prediction of microRNA/target duplexes RNA, 10:1507-1517, 2004. chroot-autobuild/build/buildd/rnahybrid_2.1-2_armel.deb: drwxr-xr-x root/root 0 2009-06-06 10:56 ./ drwxr-xr-x root/root 0 2009-06-06 10:56 ./usr/ drwxr-xr-x root/root 0 2009-06-06 10:56 ./usr/share/ drwxr-xr-x root/root 0 2009-06-06 10:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-06-06 10:56 ./usr/share/doc/rnahybrid/ -rw-r--r-- root/root 2045 2004-11-15 20:23 ./usr/share/doc/rnahybrid/README.gz -rw-r--r-- root/root 1901 2009-06-06 10:47 ./usr/share/doc/rnahybrid/copyright -rw-r--r-- root/root 437 2004-11-16 15:49 ./usr/share/doc/rnahybrid/changelog.gz drwxr-xr-x root/root 0 2009-06-06 10:56 ./usr/share/doc/rnahybrid/examples/ -rw-r--r-- root/root 281 2004-03-11 12:59 ./usr/share/doc/rnahybrid/examples/coding_worm.freq -rw-r--r-- root/root 3125 2004-11-15 19:43 ./usr/share/doc/rnahybrid/examples/hbl-1.fasta -rw-r--r-- root/root 277 2004-03-01 15:37 ./usr/share/doc/rnahybrid/examples/3UTR_fly.freq -rw-r--r-- root/root 1552 2004-11-15 19:37 ./usr/share/doc/rnahybrid/examples/cel-hbl-1.fasta -rw-r--r-- root/root 286 2004-03-23 11:53 ./usr/share/doc/rnahybrid/examples/coding_fly.freq -rw-r--r-- root/root 34 2004-11-15 20:11 ./usr/share/doc/rnahybrid/examples/cel-let-7.fasta -rw-r--r-- root/root 274 2004-03-01 15:54 ./usr/share/doc/rnahybrid/examples/3UTR_human.freq -rw-r--r-- root/root 1573 2004-11-15 19:41 ./usr/share/doc/rnahybrid/examples/cbr-hbl-1.fasta -rw-r--r-- root/root 270 2004-03-01 15:51 ./usr/share/doc/rnahybrid/examples/3UTR_worm.freq -rw-r--r-- root/root 319 2009-06-06 10:47 ./usr/share/doc/rnahybrid/changelog.Debian.gz drwxr-xr-x root/root 0 2009-06-06 10:56 ./usr/share/man/ drwxr-xr-x root/root 0 2009-06-06 10:56 ./usr/share/man/man1/ -rw-r--r-- root/root 1602 2009-06-06 10:56 ./usr/share/man/man1/RNAeffective.1.gz -rw-r--r-- root/root 2520 2009-06-06 10:56 ./usr/share/man/man1/RNAhybrid.1.gz -rw-r--r-- root/root 1724 2009-06-06 10:56 ./usr/share/man/man1/RNAcalibrate.1.gz drwxr-xr-x root/root 0 2009-06-06 10:56 ./usr/bin/ -rwxr-xr-x root/root 247336 2009-06-06 10:56 ./usr/bin/RNAeffective -rwxr-xr-x root/root 239108 2009-06-06 10:56 ./usr/bin/RNAhybrid -rwxr-xr-x root/root 247332 2009-06-06 10:56 ./usr/bin/RNAcalibrate rnahybrid_2.1-2_armel.changes: Format: 1.8 Date: Mon, 01 Jun 2009 23:01:47 +0200 Source: rnahybrid Binary: rnahybrid Architecture: armel Version: 2.1-2 Distribution: karmic Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Andreas Tille Description: rnahybrid - Fast and effective prediction of microRNA/target duplexes Changes: rnahybrid (2.1-2) unstable; urgency=low . [ Charles Plessy ] * Moved the Homepage: field out from the package's description. * Updated my email address. . [ Andreas Tille ] * Standards-Version: 3.8.1 (no changes needed) Checksums-Sha1: 544be07851cddcbab7938222e55127c4511846d4 382750 rnahybrid_2.1-2_armel.deb Checksums-Sha256: 3fc9d84622fb253bba9cc5e7fef4c56e039bc9641d7709e461f8d8bc559a4659 382750 rnahybrid_2.1-2_armel.deb Files: 3b583b22a5b4492ab733427806bab548 382750 science optional rnahybrid_2.1-2_armel.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/rnahybrid-2.1 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-1059469-2317286/chroot-autobuild --purge groff-base libglib2.0-0 libsasl2-2 gettext file libglib2.0-data libg2-dev libtasn1-3 openssl shared-mime-info curl autotools-dev po-debconf libk5crypto3 libcroco3 libxml2 libsys-hostname-long-perl libmail-sendmail-perl libkrb5support0 man-db libssl0.9.8 intltool-debian libcurl3 libldap-2.4-2 xml-core libgpg-error0 ca-certificates html2text libg20 libgcrypt11 gettext-base debhelper libidn11 libkeyutils1 sgml-base libgnutls26 libmagic1 libsasl2-modules bsdmainutils libgssapi-krb5-2 libkrb5-3 (Reading database ... 10806 files and directories currently installed.) Removing libglib2.0-data ... Removing libg2-dev ... Removing shared-mime-info ... Purging configuration files for shared-mime-info ... dpkg - warning: while removing shared-mime-info, directory `/usr/share/mime' not empty so not removed. Removing curl ... Removing autotools-dev ... Removing libmail-sendmail-perl ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libldap-2.4-2 ... Purging configuration files for libldap-2.4-2 ... Removing xml-core ... Purging configuration files for xml-core ... dpkg - warning: while removing xml-core, directory `/etc/sgml' not empty so not removed. Removing ca-certificates ... Removing hash symlinks in /etc/ssl/certs ...done. Purging configuration files for ca-certificates ... Removing libg20 ... Purging configuration files for libg20 ... Removing debhelper ... Removing libidn11 ... Purging configuration files for libidn11 ... Removing sgml-base ... Purging configuration files for sgml-base ... Removing libgnutls26 ... Purging configuration files for libgnutls26 ... Removing libgssapi-krb5-2 ... Purging configuration files for libgssapi-krb5-2 ... Removing libkrb5-3 ... Purging configuration files for libkrb5-3 ... Removing file ... Purging configuration files for file ... Removing libtasn1-3 ... Purging configuration files for libtasn1-3 ... Removing openssl ... Purging configuration files for openssl ... Removing po-debconf ... Removing libk5crypto3 ... Purging configuration files for libk5crypto3 ... Removing libsys-hostname-long-perl ... Removing libkrb5support0 ... Purging configuration files for libkrb5support0 ... Removing man-db ... Purging configuration files for man-db ... Removing intltool-debian ... Removing html2text ... Purging configuration files for html2text ... Removing libgcrypt11 ... Purging configuration files for libgcrypt11 ... Removing libkeyutils1 ... Purging configuration files for libkeyutils1 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing libgpg-error0 ... Purging configuration files for libgpg-error0 ... Removing gettext-base ... Removing libglib2.0-0 ... Purging configuration files for libglib2.0-0 ... Removing libsasl2-2 ... Purging configuration files for libsasl2-2 ... Removing libsasl2-modules ... Removing libssl0.9.8 ... Purging configuration files for libssl0.9.8 ... Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20090606-1056 Build needed 00:09:14, 4192k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1059469-2317286'] Scanning for processes to kill in build 1059469-2317286... Scanning for processes to kill in build /home/buildd/build-1059469-2317286/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1059469-2317286'] Unmounting chroot for build 1059469-2317286... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1059469-2317286'] Removing build 1059469-2317286