RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1059472-2317298', '/home/buildd/filecache-default/f294467e3e63178a3b79bfc57a5292242c93e032'] Synching the system clock with the buildd NTP service... 6 Jun 13:18:38 ntpdate[12065]: adjust time server 10.122.37.1 offset 0.000034 sec Unpacking chroot for build 1059472-2317298 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1059472-2317298'] Mounting chroot for build 1059472-2317298 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1059472-2317298', 'universe'] Attempting OGRE for universe in build-1059472-2317298 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1059472-2317298', 'deb http://ftpmaster.internal/ubuntu karmic main universe'] Overriding sources.list in build-1059472-2317298 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1059472-2317298'] Updating debian chroot for build 1059472-2317298 Get:1 http://ftpmaster.internal karmic Release.gpg [189B] Get:2 http://ftpmaster.internal karmic Release [74.6kB] Get:3 http://ftpmaster.internal karmic/main Packages [1256kB] Get:4 http://ftpmaster.internal karmic/universe Packages [4955kB] Fetched 6287kB in 8s (718kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files bash-completion binutils bsdutils coreutils cpio cpp cpp-4.4 diff e2fslibs e2fsprogs fakeroot findutils g++ g++-4.4 gcc gcc-4.4 gcc-4.4-base libblkid1 libc6.1 libc6.1-dev libcomerr2 libgcc1 libgmp3c2 libgmpxx4ldbl libgomp1 libmpfr1ldbl libncurses5 libppl-c2 libppl7 libselinux1 libsepol1 libslang2 libss2 libstdc++6 libstdc++6-4.4-dev libuuid1 libvolume-id1 linux-libc-dev login lsb-base mktemp mount ncurses-base ncurses-bin passwd perl perl-base perl-modules pkg-create-dbgsym pkgbinarymangler sed tar tzdata util-linux zlib1g 56 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/53.9MB of archives. After this operation, 2179kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files coreutils diff linux-libc-dev libc6.1-dev libgomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 libgmp3c2 libgmpxx4ldbl libmpfr1ldbl libppl-c2 libppl7 zlib1g binutils findutils libc6.1 libselinux1 passwd libuuid1 libblkid1 e2fsprogs login mktemp libsepol1 mount ncurses-bin perl-modules perl perl-base sed tar lsb-base tzdata util-linux bsdutils libncurses5 ncurses-base libcomerr2 e2fslibs libslang2 libss2 libvolume-id1 cpio bash-completion cpp fakeroot gcc g++ pkg-create-dbgsym pkgbinarymangler Extracting templates from packages: 53% Extracting templates from packages: 100% Preconfiguring packages ... Authentication warning overridden. (Reading database ... 9243 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu1 (using .../base-files_5.0.0ubuntu2_ia64.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu2) ... Installing new version of config file /etc/dpkg/origins/ubuntu ... (Reading database ... 9243 files and directories currently installed.) Preparing to replace coreutils 7.2-1 (using .../coreutils_7.4-2_ia64.deb) ... Unpacking replacement coreutils ... Replacing files in old package mktemp ... Setting up coreutils (7.4-2) ... (Reading database ... 9245 files and directories currently installed.) Preparing to replace diff 2.8.1-12ubuntu1 (using .../diff_2.8.1-13_ia64.deb) ... Unpacking replacement diff ... Setting up diff (2.8.1-13) ... (Reading database ... 9245 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.28-6.20 (using .../linux-libc-dev_2.6.30-2.4_ia64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libc6.1-dev 2.9-4ubuntu6 (using .../libc6.1-dev_2.9-9ubuntu2_ia64.deb) ... Unpacking replacement libc6.1-dev ... Preparing to replace libgomp1 4.4.0-0ubuntu5 (using .../libgomp1_4.4.0-5ubuntu1_ia64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.4 4.4.0-0ubuntu5 (using .../cpp-4.4_4.4.0-5ubuntu1_ia64.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.0-0ubuntu5 (using .../gcc-4.4-base_4.4.0-5ubuntu1_ia64.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.0-5ubuntu1) ... (Reading database ... 9252 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.0-0ubuntu5 (using .../libgcc1_1%3a4.4.0-5ubuntu1_ia64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.0-5ubuntu1) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9252 files and directories currently installed.) Preparing to replace gcc-4.4 4.4.0-0ubuntu5 (using .../gcc-4.4_4.4.0-5ubuntu1_ia64.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.0-0ubuntu5 (using .../g++-4.4_4.4.0-5ubuntu1_ia64.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.0-0ubuntu5 (using .../libstdc++6-4.4-dev_4.4.0-5ubuntu1_ia64.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libstdc++6 4.4.0-0ubuntu5 (using .../libstdc++6_4.4.0-5ubuntu1_ia64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.0-5ubuntu1) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9252 files and directories currently installed.) Preparing to replace libgmp3c2 2:4.2.4+dfsg-2ubuntu1 (using .../libgmp3c2_2%3a4.3.1+dfsg-1ubuntu2_ia64.deb) ... Unpacking replacement libgmp3c2 ... Preparing to replace libgmpxx4ldbl 2:4.2.4+dfsg-2ubuntu1 (using .../libgmpxx4ldbl_2%3a4.3.1+dfsg-1ubuntu2_ia64.deb) ... Unpacking replacement libgmpxx4ldbl ... Preparing to replace libmpfr1ldbl 2.4.0-1ubuntu3 (using .../libmpfr1ldbl_2.4.1-1ubuntu1_ia64.deb) ... Unpacking replacement libmpfr1ldbl ... Preparing to replace libppl-c2 0.10-2 (using .../libppl-c2_0.10.2-2_ia64.deb) ... Unpacking replacement libppl-c2 ... Preparing to replace libppl7 0.10-2 (using .../libppl7_0.10.2-2_ia64.deb) ... Unpacking replacement libppl7 ... Preparing to replace zlib1g 1:1.2.3.3.dfsg-12ubuntu2 (using .../zlib1g_1%3a1.2.3.3.dfsg-13ubuntu1_ia64.deb) ... Unpacking replacement zlib1g ... Setting up zlib1g (1:1.2.3.3.dfsg-13ubuntu1) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9251 files and directories currently installed.) Preparing to replace binutils 2.19.51.20090423-0ubuntu2 (using .../binutils_2.19.51.20090515-0ubuntu1_ia64.deb) ... Unpacking replacement binutils ... Preparing to replace findutils 4.4.0-2ubuntu4 (using .../findutils_4.4.1-1ubuntu3_ia64.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.1-1ubuntu3) ... (Reading database ... 9251 files and directories currently installed.) Preparing to replace libc6.1 2.9-4ubuntu6 (using .../libc6.1_2.9-9ubuntu2_ia64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6.1 ... Setting up libc6.1 (2.9-9ubuntu2) ... Installing new version of config file /etc/init.d/glibc.sh ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9251 files and directories currently installed.) Preparing to replace libselinux1 2.0.65-5build1 (using .../libselinux1_2.0.71-1_ia64.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.0.71-1) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9251 files and directories currently installed.) Preparing to replace passwd 1:4.1.1-6ubuntu6 (using .../passwd_1%3a4.1.4.1-1ubuntu1_ia64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.4.1-1ubuntu1) ... Installing new version of config file /etc/pam.d/newusers ... (Reading database ... 9247 files and directories currently installed.) Preparing to replace libuuid1 1.41.5-1ubuntu1 (using .../libuuid1_1.41.5-1ubuntu3_ia64.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (1.41.5-1ubuntu3) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9247 files and directories currently installed.) Preparing to replace libblkid1 1.41.5-1ubuntu1 (using .../libblkid1_2.15.1~rc1-1ubuntu2_ia64.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.15.1~rc1-1ubuntu2) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9250 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.5-1ubuntu1 (using .../e2fsprogs_1.41.5-1ubuntu3_ia64.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.5-1ubuntu3) ... (Reading database ... 9244 files and directories currently installed.) Preparing to replace login 1:4.1.1-6ubuntu6 (using .../login_1%3a4.1.4.1-1ubuntu1_ia64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.1-1ubuntu1) ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/securetty ... (Reading database ... 9240 files and directories currently installed.) Preparing to replace mktemp 1.6-4 (using .../archives/mktemp_7.4-2_all.deb) ... Unpacking replacement mktemp ... Setting up mktemp (7.4-2) ... (Reading database ... 9240 files and directories currently installed.) Preparing to replace libsepol1 2.0.30-2ubuntu1 (using .../libsepol1_2.0.32-1ubuntu1_ia64.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.0.32-1ubuntu1) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9240 files and directories currently installed.) Preparing to replace mount 2.14.2-1ubuntu4 (using .../mount_2.15.1~rc1-1ubuntu2_ia64.deb) ... Unpacking replacement mount ... Setting up mount (2.15.1~rc1-1ubuntu2) ... (Reading database ... 9240 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20090207-1ubuntu1 (using .../ncurses-bin_5.7+20090523-1ubuntu1_ia64.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.7+20090523-1ubuntu1) ... (Reading database ... 9240 files and directories currently installed.) Preparing to replace perl-modules 5.10.0-19ubuntu1 (using .../perl-modules_5.10.0-22ubuntu1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace perl 5.10.0-19ubuntu1 (using .../perl_5.10.0-22ubuntu1_ia64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.10.0-19ubuntu1 (using .../perl-base_5.10.0-22ubuntu1_ia64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.10.0-22ubuntu1) ... (Reading database ... 9245 files and directories currently installed.) Preparing to replace sed 4.1.5-8 (using .../archives/sed_4.2-1_ia64.deb) ... Unpacking replacement sed ... Setting up sed (4.2-1) ... (Reading database ... 9243 files and directories currently installed.) Preparing to replace tar 1.20-1 (using .../archives/tar_1.22-1_ia64.deb) ... Unpacking replacement tar ... Setting up tar (1.22-1) ... (Reading database ... 9243 files and directories currently installed.) Preparing to replace lsb-base 3.2-20ubuntu4 (using .../lsb-base_4.0-0ubuntu1_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.0-0ubuntu1) ... (Reading database ... 9243 files and directories currently installed.) Preparing to replace tzdata 2009g-1ubuntu1 (using .../tzdata_2009h-1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2009h-1) ... Current default timezone: 'Etc/UTC' Local time is now: Sat Jun 6 12:20:35 UTC 2009. Universal Time is now: Sat Jun 6 12:20:35 UTC 2009. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 9243 files and directories currently installed.) Preparing to replace util-linux 2.14.2-1ubuntu4 (using .../util-linux_2.15.1~rc1-1ubuntu2_ia64.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.15.1~rc1-1ubuntu2) ... (Reading database ... 9252 files and directories currently installed.) Preparing to replace bsdutils 1:2.14.2-1ubuntu4 (using .../bsdutils_1%3a2.15.1~rc1-1ubuntu2_ia64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.15.1~rc1-1ubuntu2) ... (Reading database ... 9252 files and directories currently installed.) Preparing to replace libncurses5 5.7+20090207-1ubuntu1 (using .../libncurses5_5.7+20090523-1ubuntu1_ia64.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.7+20090523-1ubuntu1) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9252 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20090207-1ubuntu1 (using .../ncurses-base_5.7+20090523-1ubuntu1_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.7+20090523-1ubuntu1) ... (Reading database ... 9252 files and directories currently installed.) Preparing to replace libcomerr2 1.41.5-1ubuntu1 (using .../libcomerr2_1.41.5-1ubuntu3_ia64.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.41.5-1ubuntu3) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9252 files and directories currently installed.) Preparing to replace e2fslibs 1.41.5-1ubuntu1 (using .../e2fslibs_1.41.5-1ubuntu3_ia64.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.5-1ubuntu3) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9252 files and directories currently installed.) Preparing to replace libslang2 2.1.3-3ubuntu3 (using .../libslang2_2.1.4-3_ia64.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.1.4-3) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9255 files and directories currently installed.) Preparing to replace libss2 1.41.5-1ubuntu1 (using .../libss2_1.41.5-1ubuntu3_ia64.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.41.5-1ubuntu3) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place (Reading database ... 9255 files and directories currently installed.) Preparing to replace libvolume-id1 141-1 (using .../libvolume-id1_141-1.1_ia64.deb) ... Unpacking replacement libvolume-id1 ... Setting up libvolume-id1 (141-1.1) ... (Reading database ... 9255 files and directories currently installed.) Preparing to replace cpio 2.9-15ubuntu1 (using .../cpio_2.9.90-3ubuntu1_ia64.deb) ... Unpacking replacement cpio ... Preparing to replace bash-completion 1:1.0-2 (using .../bash-completion_1%3a1.0-3_all.deb) ... Unpacking replacement bash-completion ... Preparing to replace cpp 4:4.4.0-0ubuntu8 (using .../cpp_4%3a4.4.0-3ubuntu1_ia64.deb) ... Unpacking replacement cpp ... Preparing to replace fakeroot 1.12.1ubuntu1 (using .../fakeroot_1.12.2ubuntu1_ia64.deb) ... Unpacking replacement fakeroot ... Preparing to replace gcc 4:4.4.0-0ubuntu8 (using .../gcc_4%3a4.4.0-3ubuntu1_ia64.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.4.0-0ubuntu8 (using .../g++_4%3a4.4.0-3ubuntu1_ia64.deb) ... Unpacking replacement g++ ... Preparing to replace pkg-create-dbgsym 0.26 (using .../pkg-create-dbgsym_0.27_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 57 (using .../pkgbinarymangler_58_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up linux-libc-dev (2.6.30-2.4) ... Setting up libc6.1-dev (2.9-9ubuntu2) ... Setting up libgomp1 (4.4.0-5ubuntu1) ... Setting up libgmp3c2 (2:4.3.1+dfsg-1ubuntu2) ... Setting up libgmpxx4ldbl (2:4.3.1+dfsg-1ubuntu2) ... Setting up libmpfr1ldbl (2.4.1-1ubuntu1) ... Setting up libppl7 (0.10.2-2) ... Setting up libppl-c2 (0.10.2-2) ... Setting up cpp-4.4 (4.4.0-5ubuntu1) ... Setting up binutils (2.19.51.20090515-0ubuntu1) ... Setting up gcc-4.4 (4.4.0-5ubuntu1) ... Setting up cpio (2.9.90-3ubuntu1) ... Setting up bash-completion (1:1.0-3) ... Installing new version of config file /etc/bash_completion ... Setting up cpp (4:4.4.0-3ubuntu1) ... Setting up fakeroot (1.12.2ubuntu1) ... Setting up gcc (4:4.4.0-3ubuntu1) ... Setting up pkg-create-dbgsym (0.27) ... Setting up pkgbinarymangler (58) ... Setting up g++-4.4 (4.4.0-5ubuntu1) ... Setting up perl-modules (5.10.0-22ubuntu1) ... Setting up g++ (4:4.4.0-3ubuntu1) ... Setting up libstdc++6-4.4-dev (4.4.0-5ubuntu1) ... Setting up perl (5.10.0-22ubuntu1) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1059472-2317298', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=karmic', '--comp=universe', 'rnahybrid_2.1-2.dsc'] Initiating build Automatic build of rnahybrid_2.1-2 on hooker by sbuild/ia64 1.170.5 Build started at 20090606-1321 ****************************************************************************** rnahybrid_2.1-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), autotools-dev, libg2-dev Checking for already installed source dependencies... debhelper: missing autotools-dev: missing libg2-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev libg2-dev Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libvolume-id1 Use 'apt-get autoremove' to remove them. The following extra packages will be installed: bsdmainutils file gettext gettext-base groff-base html2text intltool-debian libcroco3 libg20 libglib2.0-0 libmagic1 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make cvs gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libg2-dev libg20 libglib2.0-0 libmagic1 libxml2 man-db po-debconf 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 387kB/9989kB of archives. After this operation, 35.0MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file bsdmainutils gettext-base groff-base libxml2 man-db autotools-dev html2text libglib2.0-0 libcroco3 gettext intltool-debian po-debconf debhelper libg20 libg2-dev Authentication warning overridden. Get:1 http://ftpmaster.internal karmic/universe libg20 0.72-1 [62.8kB] Get:2 http://ftpmaster.internal karmic/universe libg2-dev 0.72-1 [324kB] dpkg-preconfigure: unable to re-open stdin: Fetched 387kB in 0s (4802kB/s) Selecting previously deselected package libmagic1. (Reading database ... 9258 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.03-1ubuntu1_ia64.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.03-1ubuntu1_ia64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu4_ia64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-6ubuntu2_ia64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-22build1_ia64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.6.32.dfsg-5ubuntu3_ia64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.5-2_ia64.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20090427.1_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14_ia64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.21.1-0ubuntu1_ia64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.1-2_ia64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-6ubuntu2_ia64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.2.14ubuntu1_all.deb) ... Selecting previously deselected package libg20. Unpacking libg20 (from .../libg20_0.72-1_ia64.deb) ... Selecting previously deselected package libg2-dev. Unpacking libg2-dev (from .../libg2-dev_0.72-1_ia64.deb) ... Setting up libmagic1 (5.03-1ubuntu1) ... Setting up file (5.03-1ubuntu1) ... Setting up bsdmainutils (6.1.10ubuntu4) ... Setting up gettext-base (0.17-6ubuntu2) ... Setting up groff-base (1.18.1.1-22build1) ... Setting up libxml2 (2.6.32.dfsg-5ubuntu3) ... Setting up man-db (2.5.5-2) ... Building database of manual pages ... ... skipping, since this is a buildd Setting up autotools-dev (20090427.1) ... Setting up html2text (1.3.2a-14) ... Setting up libglib2.0-0 (2.21.1-0ubuntu1) ... Setting up libcroco3 (0.6.1-2) ... Setting up gettext (0.17-6ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.2.14ubuntu1) ... Setting up libg20 (0.72-1) ... Setting up libg2-dev (0.72-1) ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6.1-dev_2.9-9ubuntu2 make_3.81-5 dpkg-dev_1.14.24ubuntu2 g++-4.4_4.4.0-5ubuntu1 gcc-4.4_4.4.0-5ubuntu1 binutils_2.19.51.20090515-0ubuntu1 libstdc++6_4.4.0-5ubuntu1 libstdc++6-4.4-dev_4.4.0-5ubuntu1 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Mon Jun 1 22:17:09 2009 BST using DSA key ID C09FD35A gpg: Can't check signature: public key not found dpkg-source: extracting rnahybrid in rnahybrid-2.1 dpkg-source: unpacking rnahybrid_2.1.orig.tar.gz dpkg-source: applying /srv/hooker.ubuntu.com/home/buildd/build-1059472-2317298/rnahybrid_2.1-2.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package rnahybrid dpkg-buildpackage: source version 2.1-2 dpkg-buildpackage: host architecture ia64 /usr/bin/fakeroot debian/rules clean dh_testdir cp -f /usr/share/misc/config.sub config.sub cp -f /usr/share/misc/config.guess config.guess ./configure --host=ia64-linux-gnu\ --build=ia64-linux-gnu\ --prefix=/usr\ --mandir=\${prefix}/share/man\ CFLAGS="-Wall -g -O2"\ LDFLAGS="-Wl,-z,defs" checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for ia64-linux-gnu-gcc... ia64-linux-gnu-gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether ia64-linux-gnu-gcc accepts -g... yes checking for ia64-linux-gnu-gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of ia64-linux-gnu-gcc... gcc3 checking for log in -lm... yes checking for g2_open_vd in -lg2... no configure: WARNING: libg2.a is missing. You can download it at http://g2.sourceforge.net/ checking for gdImageLine in -lgd... no checking how to run the C preprocessor... ia64-linux-gnu-gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking g2.h usability... yes checking g2.h presence... yes checking for g2.h... yes checking g2_PS.h usability... yes checking g2_PS.h presence... yes checking for g2_PS.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands dh_testdir dh_testroot rm -f build-stamp /usr/bin/make distclean make[1]: Entering directory `/build/buildd/rnahybrid-2.1' Making distclean in man make[2]: Entering directory `/build/buildd/rnahybrid-2.1/man' rm -f Makefile make[2]: Leaving directory `/build/buildd/rnahybrid-2.1/man' Making distclean in src make[2]: Entering directory `/build/buildd/rnahybrid-2.1/src' test -z "RNAhybrid RNAcalibrate RNAeffective" || rm -f RNAhybrid RNAcalibrate RNAeffective rm -f *.o core *.core rm -f *.tab.c rm -rf ./.deps rm -f Makefile rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags make[2]: Leaving directory `/build/buildd/rnahybrid-2.1/src' Making distclean in . make[2]: Entering directory `/build/buildd/rnahybrid-2.1' rm -f Makefile rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags make[2]: Leaving directory `/build/buildd/rnahybrid-2.1' rm -f config.status config.cache config.log configure.lineno make[1]: Leaving directory `/build/buildd/rnahybrid-2.1' dh_clean config.sub config.guess debian/rules build dh_testdir cp -f /usr/share/misc/config.sub config.sub cp -f /usr/share/misc/config.guess config.guess ./configure --host=ia64-linux-gnu\ --build=ia64-linux-gnu\ --prefix=/usr\ --mandir=\${prefix}/share/man\ CFLAGS="-Wall -g -O2"\ LDFLAGS="-Wl,-z,defs" checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for ia64-linux-gnu-gcc... ia64-linux-gnu-gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether ia64-linux-gnu-gcc accepts -g... yes checking for ia64-linux-gnu-gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of ia64-linux-gnu-gcc... gcc3 checking for log in -lm... yes checking for g2_open_vd in -lg2... no configure: WARNING: libg2.a is missing. You can download it at http://g2.sourceforge.net/ checking for gdImageLine in -lgd... no checking how to run the C preprocessor... ia64-linux-gnu-gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking g2.h usability... yes checking g2.h presence... yes checking for g2.h... yes checking g2_PS.h usability... yes checking g2_PS.h presence... yes checking for g2_PS.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands dh_testdir /usr/bin/make make[1]: Entering directory `/build/buildd/rnahybrid-2.1' /usr/bin/make all-recursive make[2]: Entering directory `/build/buildd/rnahybrid-2.1' Making all in src make[3]: Entering directory `/build/buildd/rnahybrid-2.1/src' if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT rnahybrid.o -MD -MP -MF ".deps/rnahybrid.Tpo" \ -c -o rnahybrid.o `test -f 'rnahybrid.c' || echo './'`rnahybrid.c; \ then mv ".deps/rnahybrid.Tpo" ".deps/rnahybrid.Po"; \ else rm -f ".deps/rnahybrid.Tpo"; exit 1; \ fi rnahybrid.c: In function 'main': rnahybrid.c:90: warning: implicit declaration of function 'getopt' rnahybrid.c:185: warning: suggest parentheses around '&&' within '||' rnahybrid.c:280: warning: implicit declaration of function 'tableAlloc' rnahybrid.c:74: warning: unused variable 'plotfileextension' rnahybrid.c:32: warning: unused variable 'optind' rnahybrid.c: In function 'maximal_duplex_energy': rnahybrid.c:485: warning: array subscript has type 'char' rnahybrid.c:485: warning: array subscript has type 'char' rnahybrid.c:485: warning: array subscript has type 'char' rnahybrid.c:485: warning: array subscript has type 'char' rnahybrid.c:455: warning: unused variable 'compl_letter' rnahybrid.c:455: warning: unused variable 'letter' rnahybrid.c: In function 'main': rnahybrid.c:359: warning: 'plot_format' may be used uninitialized in this function rnahybrid.c:56: warning: 'target_fn' may be used uninitialized in this function rnahybrid.c:57: warning: 'query_fn' may be used uninitialized in this function rnahybrid.c:76: warning: 'setname' may be used uninitialized in this function rnahybrid.c:87: warning: 'xi_slope' may be used uninitialized in this function rnahybrid.c:87: warning: 'xi_intercept' may be used uninitialized in this function rnahybrid.c:87: warning: 'theta_slope' may be used uninitialized in this function rnahybrid.c:87: warning: 'theta_intercept' may be used uninitialized in this function rnahybrid.c:70: warning: 'target_sq' may be used uninitialized in this function rnahybrid.c:71: warning: 'query_sq' may be used uninitialized in this function rnahybrid.c:79: warning: 'targetlength' may be used uninitialized in this function rnahybrid.c:80: warning: 'querylength' may be used uninitialized in this function if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT hybrid_core.o -MD -MP -MF ".deps/hybrid_core.Tpo" \ -c -o hybrid_core.o `test -f 'hybrid_core.c' || echo './'`hybrid_core.c; \ then mv ".deps/hybrid_core.Tpo" ".deps/hybrid_core.Po"; \ else rm -f ".deps/hybrid_core.Tpo"; exit 1; \ fi hybrid_core.c: In function 'free_str_Hybrid': hybrid_core.c:670: warning: unused variable 'l2' hybrid_core.c: In function 'build_str_Hybrid': hybrid_core.c:738: warning: unused variable 'l' hybrid_core.c: In function 'calc_unpaired_left_bot': hybrid_core.c:886: warning: array subscript has type 'char' hybrid_core.c:886: warning: array subscript has type 'char' hybrid_core.c:898: warning: array subscript has type 'char' hybrid_core.c:898: warning: array subscript has type 'char' hybrid_core.c:910: warning: array subscript has type 'char' hybrid_core.c:910: warning: array subscript has type 'char' hybrid_core.c: In function 'calc_closed': hybrid_core.c:943: warning: array subscript has type 'char' hybrid_core.c:943: warning: array subscript has type 'char' hybrid_core.c:959: warning: array subscript has type 'char' hybrid_core.c:959: warning: array subscript has type 'char' hybrid_core.c:977: warning: array subscript has type 'char' hybrid_core.c:977: warning: array subscript has type 'char' hybrid_core.c:996: warning: array subscript has type 'char' hybrid_core.c:996: warning: array subscript has type 'char' hybrid_core.c:1005: warning: array subscript has type 'char' hybrid_core.c:1005: warning: array subscript has type 'char' hybrid_core.c:1022: warning: array subscript has type 'char' hybrid_core.c:1022: warning: array subscript has type 'char' hybrid_core.c:1023: warning: array subscript has type 'char' hybrid_core.c:1023: warning: array subscript has type 'char' hybrid_core.c:1023: warning: array subscript has type 'char' hybrid_core.c:1023: warning: array subscript has type 'char' hybrid_core.c:1030: warning: array subscript has type 'char' hybrid_core.c:1030: warning: array subscript has type 'char' hybrid_core.c:1030: warning: array subscript has type 'char' hybrid_core.c:1030: warning: array subscript has type 'char' hybrid_core.c:1040: warning: array subscript has type 'char' hybrid_core.c:1040: warning: array subscript has type 'char' hybrid_core.c:1041: warning: array subscript has type 'char' hybrid_core.c:1041: warning: array subscript has type 'char' hybrid_core.c:1041: warning: array subscript has type 'char' hybrid_core.c:1041: warning: array subscript has type 'char' hybrid_core.c:1048: warning: array subscript has type 'char' hybrid_core.c:1048: warning: array subscript has type 'char' hybrid_core.c:1048: warning: array subscript has type 'char' hybrid_core.c:1048: warning: array subscript has type 'char' hybrid_core.c:1058: warning: array subscript has type 'char' hybrid_core.c:1058: warning: array subscript has type 'char' hybrid_core.c:1059: warning: array subscript has type 'char' hybrid_core.c:1059: warning: array subscript has type 'char' hybrid_core.c:1059: warning: array subscript has type 'char' hybrid_core.c:1059: warning: array subscript has type 'char' hybrid_core.c:1066: warning: array subscript has type 'char' hybrid_core.c:1066: warning: array subscript has type 'char' hybrid_core.c:1066: warning: array subscript has type 'char' hybrid_core.c:1066: warning: array subscript has type 'char' hybrid_core.c:1085: warning: array subscript has type 'char' hybrid_core.c:1085: warning: array subscript has type 'char' hybrid_core.c: In function 'back_unpaired_left_bot': hybrid_core.c:1263: warning: array subscript has type 'char' hybrid_core.c:1263: warning: array subscript has type 'char' hybrid_core.c:1277: warning: array subscript has type 'char' hybrid_core.c:1277: warning: array subscript has type 'char' hybrid_core.c:1291: warning: array subscript has type 'char' hybrid_core.c:1291: warning: array subscript has type 'char' hybrid_core.c: In function 'back_closed': hybrid_core.c:1352: warning: array subscript has type 'char' hybrid_core.c:1352: warning: array subscript has type 'char' hybrid_core.c:1371: warning: array subscript has type 'char' hybrid_core.c:1371: warning: array subscript has type 'char' hybrid_core.c:1396: warning: array subscript has type 'char' hybrid_core.c:1396: warning: array subscript has type 'char' hybrid_core.c:1422: warning: array subscript has type 'char' hybrid_core.c:1422: warning: array subscript has type 'char' hybrid_core.c:1433: warning: array subscript has type 'char' hybrid_core.c:1433: warning: array subscript has type 'char' hybrid_core.c:1457: warning: array subscript has type 'char' hybrid_core.c:1457: warning: array subscript has type 'char' hybrid_core.c:1458: warning: array subscript has type 'char' hybrid_core.c:1458: warning: array subscript has type 'char' hybrid_core.c:1458: warning: array subscript has type 'char' hybrid_core.c:1458: warning: array subscript has type 'char' hybrid_core.c:1469: warning: array subscript has type 'char' hybrid_core.c:1469: warning: array subscript has type 'char' hybrid_core.c:1469: warning: array subscript has type 'char' hybrid_core.c:1469: warning: array subscript has type 'char' hybrid_core.c:1481: warning: array subscript has type 'char' hybrid_core.c:1481: warning: array subscript has type 'char' hybrid_core.c:1482: warning: array subscript has type 'char' hybrid_core.c:1482: warning: array subscript has type 'char' hybrid_core.c:1482: warning: array subscript has type 'char' hybrid_core.c:1482: warning: array subscript has type 'char' hybrid_core.c:1493: warning: array subscript has type 'char' hybrid_core.c:1493: warning: array subscript has type 'char' hybrid_core.c:1493: warning: array subscript has type 'char' hybrid_core.c:1493: warning: array subscript has type 'char' hybrid_core.c:1507: warning: array subscript has type 'char' hybrid_core.c:1507: warning: array subscript has type 'char' hybrid_core.c:1508: warning: array subscript has type 'char' hybrid_core.c:1508: warning: array subscript has type 'char' hybrid_core.c:1508: warning: array subscript has type 'char' hybrid_core.c:1508: warning: array subscript has type 'char' hybrid_core.c:1519: warning: array subscript has type 'char' hybrid_core.c:1519: warning: array subscript has type 'char' hybrid_core.c:1519: warning: array subscript has type 'char' hybrid_core.c:1519: warning: array subscript has type 'char' hybrid_core.c:1567: warning: array subscript has type 'char' hybrid_core.c:1567: warning: array subscript has type 'char' hybrid_core.c: In function 'tableAlloc': hybrid_core.c:1639: warning: unused variable 'k' hybrid_core.c:1639: warning: unused variable 'j' hybrid_core.c: In function 'back_hybrid': hybrid_core.c:1129: warning: 'best_k' may be used uninitialized in this function hybrid_core.c: In function 'calc_closed': hybrid_core.c:934: warning: 'v7d' may be used uninitialized in this function if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT energy.o -MD -MP -MF ".deps/energy.Tpo" \ -c -o energy.o `test -f 'energy.c' || echo './'`energy.c; \ then mv ".deps/energy.Tpo" ".deps/energy.Po"; \ else rm -f ".deps/energy.Tpo"; exit 1; \ fi energy.c: In function 'sr_energy': energy.c:33: warning: array subscript has type 'char' energy.c:33: warning: array subscript has type 'char' energy.c:33: warning: array subscript has type 'char' energy.c:33: warning: array subscript has type 'char' energy.c: In function 'dr_energy': energy.c:38: warning: array subscript has type 'char' energy.c:38: warning: array subscript has type 'char' energy.c:38: warning: array subscript has type 'char' energy.c: In function 'dli_energy': energy.c:42: warning: array subscript has type 'char' energy.c:42: warning: array subscript has type 'char' energy.c:42: warning: array subscript has type 'char' energy.c: In function 'dl_energy': energy.c:46: warning: array subscript has type 'char' energy.c:46: warning: array subscript has type 'char' energy.c:46: warning: array subscript has type 'char' energy.c: In function 'dri_energy': energy.c:50: warning: array subscript has type 'char' energy.c:50: warning: array subscript has type 'char' energy.c:50: warning: array subscript has type 'char' energy.c: In function 'bl_stacking': energy.c:98: warning: array subscript has type 'char' energy.c:98: warning: array subscript has type 'char' energy.c:98: warning: array subscript has type 'char' energy.c:98: warning: array subscript has type 'char' energy.c:99: warning: array subscript has type 'char' energy.c:99: warning: array subscript has type 'char' energy.c:99: warning: array subscript has type 'char' energy.c:99: warning: array subscript has type 'char' energy.c: In function 'int_special': energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:108: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:109: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:110: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:111: warning: array subscript has type 'char' energy.c:112: warning: control reaches end of non-void function if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT input.o -MD -MP -MF ".deps/input.Tpo" \ -c -o input.o `test -f 'input.c' || echo './'`input.c; \ then mv ".deps/input.Tpo" ".deps/input.Po"; \ else rm -f ".deps/input.Tpo"; exit 1; \ fi if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT fasta.o -MD -MP -MF ".deps/fasta.Tpo" \ -c -o fasta.o `test -f 'fasta.c' || echo './'`fasta.c; \ then mv ".deps/fasta.Tpo" ".deps/fasta.Po"; \ else rm -f ".deps/fasta.Tpo"; exit 1; \ fi fasta.c: In function 'nextAC': fasta.c:22: warning: implicit declaration of function 'exit' fasta.c:22: warning: incompatible implicit declaration of built-in function 'exit' fasta.c: In function 'nextSQ': fasta.c:63: warning: incompatible implicit declaration of built-in function 'exit' fasta.c:31: warning: unused variable 's' if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT plot.o -MD -MP -MF ".deps/plot.Tpo" \ -c -o plot.o `test -f 'plot.c' || echo './'`plot.c; \ then mv ".deps/plot.Tpo" ".deps/plot.Po"; \ else rm -f ".deps/plot.Tpo"; exit 1; \ fi ia64-linux-gnu-gcc -Wall -g -O2 -Wl,-z,defs -o RNAhybrid rnahybrid.o hybrid_core.o energy.o input.o fasta.o plot.o -lm if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT rnacalibrate.o -MD -MP -MF ".deps/rnacalibrate.Tpo" \ -c -o rnacalibrate.o `test -f 'rnacalibrate.c' || echo './'`rnacalibrate.c; \ then mv ".deps/rnacalibrate.Tpo" ".deps/rnacalibrate.Po"; \ else rm -f ".deps/rnacalibrate.Tpo"; exit 1; \ fi rnacalibrate.c: In function 'main': rnacalibrate.c:109: warning: implicit declaration of function 'getopt' rnacalibrate.c:162: warning: suggest parentheses around '&&' within '||' rnacalibrate.c:199: warning: implicit declaration of function 'strlen' rnacalibrate.c:199: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:200: warning: implicit declaration of function 'strcpy' rnacalibrate.c:200: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:202: warning: implicit declaration of function 'remove_whitespace' rnacalibrate.c:212: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:213: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:235: warning: implicit declaration of function 'end' rnacalibrate.c:237: warning: implicit declaration of function 'nextAC' rnacalibrate.c:238: warning: implicit declaration of function 'nextSQ' rnacalibrate.c:242: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:245: warning: implicit declaration of function 'toupper' rnacalibrate.c:253: warning: implicit declaration of function 'strchr' rnacalibrate.c:253: warning: incompatible implicit declaration of built-in function 'strchr' rnacalibrate.c:253: warning: cast from pointer to integer of different size rnacalibrate.c:254: warning: cast from pointer to integer of different size rnacalibrate.c:257: warning: cast from pointer to integer of different size rnacalibrate.c:257: warning: cast from pointer to integer of different size rnacalibrate.c:268: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:279: warning: incompatible implicit declaration of built-in function 'strchr' rnacalibrate.c:279: warning: cast from pointer to integer of different size rnacalibrate.c:280: warning: cast from pointer to integer of different size rnacalibrate.c:283: warning: cast from pointer to integer of different size rnacalibrate.c:283: warning: cast from pointer to integer of different size rnacalibrate.c:300: warning: implicit declaration of function 'init_constants' rnacalibrate.c:301: warning: implicit declaration of function 'init_energies' rnacalibrate.c:303: warning: implicit declaration of function 'tableAlloc' rnacalibrate.c:315: warning: suggest parentheses around '&&' within '||' rnacalibrate.c:329: warning: incompatible implicit declaration of built-in function 'strlen' rnacalibrate.c:393: warning: implicit declaration of function 'convert_y' rnacalibrate.c:416: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:417: warning: implicit declaration of function 'strcat' rnacalibrate.c:417: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:418: warning: implicit declaration of function 'convert_x' rnacalibrate.c:443: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:458: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:459: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:485: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:500: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:501: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:528: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:576: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:577: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:601: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:615: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:616: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:641: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:653: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:654: warning: incompatible implicit declaration of built-in function 'strcat' rnacalibrate.c:679: warning: incompatible implicit declaration of built-in function 'strcpy' rnacalibrate.c:35: warning: unused variable 'optind' rnacalibrate.c:56: warning: 'query_fn' may be used uninitialized in this function rnacalibrate.c:57: warning: 'target_fn' may be used uninitialized in this function rnacalibrate.c:65: warning: 'freq_filename' may be used uninitialized in this function rnacalibrate.c:62: warning: 'target_sq' may be used uninitialized in this function if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT numerical.o -MD -MP -MF ".deps/numerical.Tpo" \ -c -o numerical.o `test -f 'numerical.c' || echo './'`numerical.c; \ then mv ".deps/numerical.Tpo" ".deps/numerical.Po"; \ else rm -f ".deps/numerical.Tpo"; exit 1; \ fi numerical.c: In function 'empirical_cumulative_distribution_function': numerical.c:32: warning: implicit declaration of function 'qsort' numerical.c:36: warning: implicit declaration of function 'calloc' numerical.c:36: warning: incompatible implicit declaration of built-in function 'calloc' numerical.c: In function 'estimate_evd_parameters': numerical.c:156: warning: implicit declaration of function 'free' numerical.c:156: warning: incompatible implicit declaration of built-in function 'free' numerical.c: In function 'brent': numerical.c:289: warning: implicit declaration of function 'printf' numerical.c:289: warning: incompatible implicit declaration of built-in function 'printf' numerical.c:236: warning: 'd' may be used uninitialized in this function if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT random.o -MD -MP -MF ".deps/random.Tpo" \ -c -o random.o `test -f 'random.c' || echo './'`random.c; \ then mv ".deps/random.Tpo" ".deps/random.Po"; \ else rm -f ".deps/random.Tpo"; exit 1; \ fi random.c: In function 'read_dinucleotide_frequencies': random.c:29: warning: implicit declaration of function 'toupper' random.c:25: warning: 'i' may be used uninitialized in this function random.c:25: warning: 'j' may be used uninitialized in this function if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT mt19937-1.o -MD -MP -MF ".deps/mt19937-1.Tpo" \ -c -o mt19937-1.o `test -f 'mt19937-1.c' || echo './'`mt19937-1.c; \ then mv ".deps/mt19937-1.Tpo" ".deps/mt19937-1.Po"; \ else rm -f ".deps/mt19937-1.Tpo"; exit 1; \ fi ia64-linux-gnu-gcc -Wall -g -O2 -Wl,-z,defs -o RNAcalibrate rnacalibrate.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lm if ia64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I/usr/include -Wall -g -O2 -MT rnaeffective.o -MD -MP -MF ".deps/rnaeffective.Tpo" \ -c -o rnaeffective.o `test -f 'rnaeffective.c' || echo './'`rnaeffective.c; \ then mv ".deps/rnaeffective.Tpo" ".deps/rnaeffective.Po"; \ else rm -f ".deps/rnaeffective.Tpo"; exit 1; \ fi rnaeffective.c: In function 'main': rnaeffective.c:112: warning: implicit declaration of function 'getopt' rnaeffective.c:165: warning: suggest parentheses around '&&' within '||' rnaeffective.c:216: warning: implicit declaration of function 'strlen' rnaeffective.c:216: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:217: warning: implicit declaration of function 'strcpy' rnaeffective.c:217: warning: incompatible implicit declaration of built-in function 'strcpy' rnaeffective.c:219: warning: implicit declaration of function 'remove_whitespace' rnaeffective.c:231: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:232: warning: incompatible implicit declaration of built-in function 'strcpy' rnaeffective.c:255: warning: implicit declaration of function 'end' rnaeffective.c:257: warning: implicit declaration of function 'nextAC' rnaeffective.c:258: warning: implicit declaration of function 'nextSQ' rnaeffective.c:262: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:265: warning: implicit declaration of function 'toupper' rnaeffective.c:273: warning: implicit declaration of function 'strchr' rnaeffective.c:273: warning: incompatible implicit declaration of built-in function 'strchr' rnaeffective.c:273: warning: cast from pointer to integer of different size rnaeffective.c:274: warning: cast from pointer to integer of different size rnaeffective.c:277: warning: cast from pointer to integer of different size rnaeffective.c:277: warning: cast from pointer to integer of different size rnaeffective.c:288: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:299: warning: incompatible implicit declaration of built-in function 'strchr' rnaeffective.c:299: warning: cast from pointer to integer of different size rnaeffective.c:300: warning: cast from pointer to integer of different size rnaeffective.c:303: warning: cast from pointer to integer of different size rnaeffective.c:303: warning: cast from pointer to integer of different size rnaeffective.c:318: warning: implicit declaration of function 'init_constants' rnaeffective.c:319: warning: implicit declaration of function 'init_energies' rnaeffective.c:321: warning: implicit declaration of function 'tableAlloc' rnaeffective.c:333: warning: suggest parentheses around '&&' within '||' rnaeffective.c:346: warning: incompatible implicit declaration of built-in function 'strlen' rnaeffective.c:412: warning: implicit declaration of function 'convert_y' rnaeffective.c:436: warning: incompatible implicit declaration of built-in function 'strcpy' rnaeffective.c:437: warning: implicit declaration of function 'strcat' rnaeffective.c:437: warning: incompatible implicit declaration of built-in function 'strcat' rnaeffective.c:438: warning: implicit declaration of function 'convert_x' rnaeffective.c:520: warning: suggest parentheses around '&&' within '||' rnaeffective.c:565: warning: incompatible implicit declaration of built-in function 'strcpy' rnaeffective.c:566: warning: incompatible implicit declaration of built-in function 'strcat' rnaeffective.c:29: warning: unused variable 'optind' rnaeffective.c:659: warning: control reaches end of non-void function rnaeffective.c:26: warning: 'l' may be used uninitialized in this function rnaeffective.c:50: warning: 'query_fn' may be used uninitialized in this function rnaeffective.c:51: warning: 'target_fn' may be used uninitialized in this function rnaeffective.c:59: warning: 'freq_filename' may be used uninitialized in this function rnaeffective.c:56: warning: 'target_sq' may be used uninitialized in this function rnaeffective.c:68: warning: 'targetlength' may be used uninitialized in this function rnaeffective.c:79: warning: 'k' may be used uninitialized in this function rnaeffective.c:89: warning: 'smallest_error_sum' may be used uninitialized in this function ia64-linux-gnu-gcc -Wall -g -O2 -Wl,-z,defs -o RNAeffective rnaeffective.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lm make[3]: Leaving directory `/build/buildd/rnahybrid-2.1/src' Making all in man make[3]: Entering directory `/build/buildd/rnahybrid-2.1/man' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/rnahybrid-2.1/man' make[3]: Entering directory `/build/buildd/rnahybrid-2.1' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/rnahybrid-2.1' make[2]: Leaving directory `/build/buildd/rnahybrid-2.1' make[1]: Leaving directory `/build/buildd/rnahybrid-2.1' touch build-stamp /usr/bin/fakeroot debian/rules binary-arch src/RNAhybrid -s 3utr_worm -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.064406 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAcalibrate -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 17 1.789058 0.371503 src/RNAhybrid -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.052460 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAhybrid -f 2,7 -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -27.3 kcal/mol p-value: 0.070821 position 1189 target 5' C AU U C 3' CUGUAUA GCCU CUACCUC GAUAUGU UGGA GAUGGAG miRNA 3' UU U U 5' src/RNAcalibrate -f 2,7 -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 -1 0.000000 0.000000 src/RNAhybrid -s 3utr_worm -t examples/cbr-hbl-1.fasta -q examples/cel-let-7.fasta target: ENSCBRT00000006770.1|ENSCBRG00000005546.1 length: 1449 miRNA : cel-let-7 length: 22 mfe: -28.3 kcal/mol p-value: 0.060792 position 1333 target 5' C GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAeffective -k 30 -s -t examples/hbl-1.fasta -q examples/cel-let-7.fasta 1.000000 0.494547 1.100000 0.325289 1.200000 0.260719 1.300000 0.347305 1.400000 0.473011 1.500000 0.647905 1.600000 1.060449 1.700000 1.339005 1.800000 1.897132 1.900000 1.960579 2.000000 2.726574 Effective number: 1.200000 make: [test] Error 27 (ignored) dh_testdir dh_testroot dh_clean -k dh_installdirs /usr/bin/make DESTDIR=/build/buildd/rnahybrid-2.1/debian/rnahybrid install make[1]: Entering directory `/build/buildd/rnahybrid-2.1' Making install in src make[2]: Entering directory `/build/buildd/rnahybrid-2.1/src' make[3]: Entering directory `/build/buildd/rnahybrid-2.1/src' /bin/bash ../mkinstalldirs /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin mkdir -p -- /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin /usr/bin/install -c RNAhybrid /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin/RNAhybrid /usr/bin/install -c RNAcalibrate /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin/RNAcalibrate /usr/bin/install -c RNAeffective /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/bin/RNAeffective make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/rnahybrid-2.1/src' make[2]: Leaving directory `/build/buildd/rnahybrid-2.1/src' Making install in man make[2]: Entering directory `/build/buildd/rnahybrid-2.1/man' make[3]: Entering directory `/build/buildd/rnahybrid-2.1/man' make[3]: Nothing to be done for `install-exec-am'. /bin/bash ../mkinstalldirs /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1 mkdir -p -- /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1 /usr/bin/install -c -m 644 ./RNAhybrid.1 /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1/RNAhybrid.1 /usr/bin/install -c -m 644 ./RNAcalibrate.1 /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1/RNAcalibrate.1 /usr/bin/install -c -m 644 ./RNAeffective.1 /build/buildd/rnahybrid-2.1/debian/rnahybrid/usr/share/man/man1/RNAeffective.1 make[3]: Leaving directory `/build/buildd/rnahybrid-2.1/man' make[2]: Leaving directory `/build/buildd/rnahybrid-2.1/man' make[2]: Entering directory `/build/buildd/rnahybrid-2.1' make[3]: Entering directory `/build/buildd/rnahybrid-2.1' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/rnahybrid-2.1' make[2]: Leaving directory `/build/buildd/rnahybrid-2.1' make[1]: Leaving directory `/build/buildd/rnahybrid-2.1' dh_testdir dh_testroot dh_installchangelogs ChangeLog dh_installdocs README dh_installexamples examples/* dh_link dh_strip dh_strip debug symbol extraction: all non-arch-all packages for this build platform ia64: rnahybrid dh_strip debug symbol extraction: packages to act on: rnahybrid dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/rnahybrid-dbgsym/DEBIAN/control, package rnahybrid-dbgsym, directory ./debian/rnahybrid-dbgsym pkgstriptranslations: rnahybrid-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `/build/buildd/rnahybrid-2.1/debian/rnahybrid-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `rnahybrid-dbgsym' in `../rnahybrid-dbgsym_2.1-2_ia64.ddeb'. dh_compress dh_fixperms dh_installdeb dh_shlibdeps dh_gencontrol dh_md5sums dh_builddeb pkgstriptranslations: processing control file: ./debian/rnahybrid/DEBIAN/control, package rnahybrid, directory ./debian/rnahybrid pkgstriptranslations: rnahybrid does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `debian/rnahybrid/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `rnahybrid' in `../rnahybrid_2.1-2_ia64.deb'. dpkg-genchanges -B -mUbuntu/ia64 Build Daemon >../rnahybrid_2.1-2_ia64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20090606-1330 Publishing debug debs. chroot-autobuild/build/buildd/rnahybrid_2.1-2_ia64.deb: new debian package, version 2.0. size 491976 bytes: control archive= 1326 bytes. 965 bytes, 20 lines control 1398 bytes, 19 lines md5sums Package: rnahybrid Version: 2.1-2 Architecture: ia64 Maintainer: Ubuntu MOTU Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 1316 Depends: libc6.1 (>= 2.3.4) Section: science Priority: optional Homepage: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html Description: Fast and effective prediction of microRNA/target duplexes RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. The short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction. . Public research assisted by RNAhybrid should cite: Marc Rehmsmeier, Peter Steffen, Matthias Höchsmann, Robert Giegerich Fast and effective prediction of microRNA/target duplexes RNA, 10:1507-1517, 2004. chroot-autobuild/build/buildd/rnahybrid_2.1-2_ia64.deb: drwxr-xr-x root/root 0 2009-06-06 13:29 ./ drwxr-xr-x root/root 0 2009-06-06 13:29 ./usr/ drwxr-xr-x root/root 0 2009-06-06 13:29 ./usr/bin/ -rwxr-xr-x root/root 391112 2009-06-06 13:29 ./usr/bin/RNAhybrid -rwxr-xr-x root/root 416512 2009-06-06 13:29 ./usr/bin/RNAcalibrate -rwxr-xr-x root/root 414160 2009-06-06 13:29 ./usr/bin/RNAeffective drwxr-xr-x root/root 0 2009-06-06 13:29 ./usr/share/ drwxr-xr-x root/root 0 2009-06-06 13:29 ./usr/share/man/ drwxr-xr-x root/root 0 2009-06-06 13:29 ./usr/share/man/man1/ -rw-r--r-- root/root 1602 2009-06-06 13:29 ./usr/share/man/man1/RNAeffective.1.gz -rw-r--r-- root/root 2520 2009-06-06 13:29 ./usr/share/man/man1/RNAhybrid.1.gz -rw-r--r-- root/root 1724 2009-06-06 13:29 ./usr/share/man/man1/RNAcalibrate.1.gz drwxr-xr-x root/root 0 2009-06-06 13:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-06-06 13:29 ./usr/share/doc/rnahybrid/ -rw-r--r-- root/root 437 2004-11-16 15:49 ./usr/share/doc/rnahybrid/changelog.gz -rw-r--r-- root/root 2045 2004-11-15 20:23 ./usr/share/doc/rnahybrid/README.gz -rw-r--r-- root/root 1901 2009-06-06 13:21 ./usr/share/doc/rnahybrid/copyright drwxr-xr-x root/root 0 2009-06-06 13:29 ./usr/share/doc/rnahybrid/examples/ -rw-r--r-- root/root 277 2004-03-01 15:37 ./usr/share/doc/rnahybrid/examples/3UTR_fly.freq -rw-r--r-- root/root 274 2004-03-01 15:54 ./usr/share/doc/rnahybrid/examples/3UTR_human.freq -rw-r--r-- root/root 270 2004-03-01 15:51 ./usr/share/doc/rnahybrid/examples/3UTR_worm.freq -rw-r--r-- root/root 1573 2004-11-15 19:41 ./usr/share/doc/rnahybrid/examples/cbr-hbl-1.fasta -rw-r--r-- root/root 1552 2004-11-15 19:37 ./usr/share/doc/rnahybrid/examples/cel-hbl-1.fasta -rw-r--r-- root/root 34 2004-11-15 20:11 ./usr/share/doc/rnahybrid/examples/cel-let-7.fasta -rw-r--r-- root/root 286 2004-03-23 11:53 ./usr/share/doc/rnahybrid/examples/coding_fly.freq -rw-r--r-- root/root 281 2004-03-11 12:59 ./usr/share/doc/rnahybrid/examples/coding_worm.freq -rw-r--r-- root/root 3125 2004-11-15 19:43 ./usr/share/doc/rnahybrid/examples/hbl-1.fasta -rw-r--r-- root/root 319 2009-06-06 13:21 ./usr/share/doc/rnahybrid/changelog.Debian.gz rnahybrid_2.1-2_ia64.changes: Format: 1.8 Date: Mon, 01 Jun 2009 23:01:47 +0200 Source: rnahybrid Binary: rnahybrid Architecture: ia64 Version: 2.1-2 Distribution: karmic Urgency: low Maintainer: Ubuntu/ia64 Build Daemon Changed-By: Andreas Tille Description: rnahybrid - Fast and effective prediction of microRNA/target duplexes Changes: rnahybrid (2.1-2) unstable; urgency=low . [ Charles Plessy ] * Moved the Homepage: field out from the package's description. * Updated my email address. . [ Andreas Tille ] * Standards-Version: 3.8.1 (no changes needed) Checksums-Sha1: 78e0978678cccff8c0b83cf04c7099bdf8eca473 491976 rnahybrid_2.1-2_ia64.deb Checksums-Sha256: 92dd2e7f031666b16f0f43653a371b9af876b89d5d91df0e2a790ce540f44174 491976 rnahybrid_2.1-2_ia64.deb Files: f8fd95dababc46b8d0f576076ad92664 491976 science optional rnahybrid_2.1-2_ia64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/rnahybrid-2.1 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/srv/hooker.ubuntu.com/home/buildd/build-1059472-2317298/chroot-autobuild --purge intltool-debian groff-base libglib2.0-0 gettext file libg2-dev libg20 html2text gettext-base debhelper autotools-dev po-debconf libcroco3 libmagic1 libxml2 bsdmainutils man-db (Reading database ... 10380 files and directories currently installed.) Removing libg2-dev ... Removing libg20 ... Purging configuration files for libg20 ... Removing debhelper ... Removing autotools-dev ... Removing po-debconf ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db/examples' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/man/id/man5' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/bug/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/lib/man-db' not empty so not removed. Removing intltool-debian ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing file ... Purging configuration files for file ... Removing html2text ... Purging configuration files for html2text ... Removing gettext-base ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libglib2.0-0 ... Purging configuration files for libglib2.0-0 ... Processing triggers for libc6.1 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20090606-1330 Build needed 00:08:10, 6148k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1059472-2317298'] Scanning for processes to kill in build 1059472-2317298... Scanning for processes to kill in build /home/buildd/build-1059472-2317298/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1059472-2317298'] Unmounting chroot for build 1059472-2317298... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1059472-2317298'] Removing build 1059472-2317298