https://launchpad.net/ubuntu/+source/rnahybrid/2.1.2-5/+build/15635549 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-011 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 20:54:43 ntpdate[1829]: adjust time server 10.211.37.1 offset -0.000371 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15635549 /home/buildd/filecache-default/c94e68d26d8f9980ef1477bde7a83b553e812c5f Creating target for build PACKAGEBUILD-15635549 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15635549 Starting target for build PACKAGEBUILD-15635549 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15635549 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15635549 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15635549 Updating target for build PACKAGEBUILD-15635549 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [968 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8432 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5039 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [103 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [67.2 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [494 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [474 kB] Fetched 16.6 MB in 6s (2583 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-arm-linux-gnueabihf binutils-common cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libkmod2 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 51 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 38.4 MB of archives. After this operation, 40.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf base-files armhf 10.1ubuntu8 [59.8 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf dash armhf 0.5.10.2-1 [81.2 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main armhf findutils armhf 4.6.0+git+20181018-1 [279 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf hostname armhf 3.21 [10.3 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm6 armhf 1.18.1-1 [24.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm-compat4 armhf 1.18.1-1 [5784 B] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libperl5.28 armhf 5.28.0-3 [3153 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf perl armhf 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf perl-base armhf 5.28.0-3 [1397 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.2 [590 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main armhf sed armhf 4.5-2 [178 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main armhf init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd-sysv armhf 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libapparmor1 armhf 2.12-4ubuntu10 [25.7 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf libcap-ng0 armhf 0.7.9-1build1 [9600 B] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf libaudit1 armhf 1:2.8.3-1ubuntu3 [35.5 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgpg-error0 armhf 1.32-3 [48.1 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libkmod2 armhf 25-1ubuntu1.1 [35.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd armhf 239-7ubuntu10.1 [2804 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsystemd0 armhf 239-7ubuntu10.1 [191 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main armhf init armhf 1.55 [6476 B] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libcc1-0 armhf 8.2.0-9ubuntu1 [32.5 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libgomp1 armhf 8.2.0-9ubuntu1 [66.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libatomic1 armhf 8.2.0-9ubuntu1 [7068 B] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libasan5 armhf 8.2.0-9ubuntu1 [349 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf libubsan1 armhf 8.2.0-9ubuntu1 [109 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8-base armhf 8.2.0-9ubuntu1 [18.6 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++6 armhf 8.2.0-9ubuntu1 [350 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf g++-8 armhf 8.2.0-9ubuntu1 [6431 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++-8-dev armhf 8.2.0-9ubuntu1 [1594 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf libgcc-8-dev armhf 8.2.0-9ubuntu1 [632 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8 armhf 8.2.0-9ubuntu1 [6349 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf cpp-8 armhf 8.2.0-9ubuntu1 [5643 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libgcc1 armhf 1:8.2.0-9ubuntu1 [37.1 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf libbinutils armhf 2.31.1-7ubuntu1 [309 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf binutils-common armhf 2.31.1-7ubuntu1 [194 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf binutils armhf 2.31.1-7ubuntu1 [3360 B] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf binutils-arm-linux-gnueabihf armhf 2.31.1-7ubuntu1 [2144 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libselinux1 armhf 2.8-1build2 [59.1 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-1build2 [6892 B] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-1build2 [72.5 kB] Get:44 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libudev1 armhf 239-7ubuntu10.1 [48.3 kB] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libseccomp2 armhf 2.3.3-3ubuntu2 [30.5 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.145-4.1ubuntu4 [118 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dmsetup armhf 2:1.02.145-4.1ubuntu4 [73.6 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsqlite3-0 armhf 3.25.3-1 [447 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2018g-1 [188 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf g++ armhf 4:8.2.0-2ubuntu2 [1616 B] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf gcc armhf 4:8.2.0-2ubuntu2 [5236 B] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf cpp armhf 4:8.2.0-2ubuntu2 [27.6 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 4.18.0-11.12 [1022 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main armhf lockfile-progs armhf 0.1.18 [9372 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.4 MB in 1s (26.5 MB/s) (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_armhf.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_armhf.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_armhf.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../hostname_3.21_armhf.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_armhf.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... Selecting previously unselected package perl-modules-5.28. Preparing to unpack .../1-perl-modules-5.28_5.28.0-3_all.deb ... Unpacking perl-modules-5.28 (5.28.0-3) ... Selecting previously unselected package libgdbm6:armhf. Preparing to unpack .../2-libgdbm6_1.18.1-1_armhf.deb ... Unpacking libgdbm6:armhf (1.18.1-1) ... Preparing to unpack .../3-libgdbm-compat4_1.18.1-1_armhf.deb ... Unpacking libgdbm-compat4:armhf (1.18.1-1) over (1.14.1-6) ... Selecting previously unselected package libperl5.28:armhf. Preparing to unpack .../4-libperl5.28_5.28.0-3_armhf.deb ... Unpacking libperl5.28:armhf (5.28.0-3) ... Preparing to unpack .../5-perl-base_5.28.0-3_armhf.deb ... Unpacking perl-base (5.28.0-3) over (5.26.2-7) ... Setting up perl-base (5.28.0-3) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.2_armhf.deb ... Unpacking libdb5.3:armhf (5.3.28+dfsg1-0.2) over (5.3.28+dfsg1-0.1) ... Setting up libdb5.3:armhf (5.3.28+dfsg1-0.2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../archives/sed_4.5-2_armhf.deb ... Unpacking sed (4.5-2) over (4.5-1) ... Setting up sed (4.5-2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.55_all.deb ... Unpacking init-system-helpers (1.55) over (1.54) ... Setting up init-system-helpers (1.55) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../systemd-sysv_239-7ubuntu10.1_armhf.deb ... Unpacking systemd-sysv (239-7ubuntu10.1) over (239-7ubuntu10) ... Preparing to unpack .../libapparmor1_2.12-4ubuntu10_armhf.deb ... Unpacking libapparmor1:armhf (2.12-4ubuntu10) over (2.12-4ubuntu8) ... Preparing to unpack .../libaudit-common_1%3a2.8.3-1ubuntu3_all.deb ... Unpacking libaudit-common (1:2.8.3-1ubuntu3) over (1:2.8.3-1ubuntu2) ... Setting up libaudit-common (1:2.8.3-1ubuntu3) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-1build1_armhf.deb ... Unpacking libcap-ng0:armhf (0.7.9-1build1) over (0.7.9-1) ... Setting up libcap-ng0:armhf (0.7.9-1build1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.3-1ubuntu3_armhf.deb ... Unpacking libaudit1:armhf (1:2.8.3-1ubuntu3) over (1:2.8.3-1ubuntu2) ... Setting up libaudit1:armhf (1:2.8.3-1ubuntu3) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.32-3_armhf.deb ... Unpacking libgpg-error0:armhf (1.32-3) over (1.32-1) ... Setting up libgpg-error0:armhf (1.32-3) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libkmod2_25-1ubuntu1.1_armhf.deb ... Unpacking libkmod2:armhf (25-1ubuntu1.1) over (25-1ubuntu1) ... Preparing to unpack .../systemd_239-7ubuntu10.1_armhf.deb ... Unpacking systemd (239-7ubuntu10.1) over (239-7ubuntu10) ... Preparing to unpack .../libsystemd0_239-7ubuntu10.1_armhf.deb ... Unpacking libsystemd0:armhf (239-7ubuntu10.1) over (239-7ubuntu10) ... Setting up libsystemd0:armhf (239-7ubuntu10.1) ... Setting up libapparmor1:armhf (2.12-4ubuntu10) ... Setting up libkmod2:armhf (25-1ubuntu1.1) ... Setting up systemd (239-7ubuntu10.1) ... Setting up systemd-sysv (239-7ubuntu10.1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../0-init_1.55_armhf.deb ... Unpacking init (1.55) over (1.54) ... Preparing to unpack .../1-libcc1-0_8.2.0-9ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../2-libgomp1_8.2.0-9ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../3-libatomic1_8.2.0-9ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../4-libasan5_8.2.0-9ubuntu1_armhf.deb ... Unpacking libasan5:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../5-libubsan1_8.2.0-9ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../6-gcc-8-base_8.2.0-9ubuntu1_armhf.deb ... Unpacking gcc-8-base:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Setting up gcc-8-base:armhf (8.2.0-9ubuntu1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.2.0-9ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Setting up libstdc++6:armhf (8.2.0-9ubuntu1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../0-g++-8_8.2.0-9ubuntu1_armhf.deb ... Unpacking g++-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../1-libstdc++-8-dev_8.2.0-9ubuntu1_armhf.deb ... Unpacking libstdc++-8-dev:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../2-libgcc-8-dev_8.2.0-9ubuntu1_armhf.deb ... Unpacking libgcc-8-dev:armhf (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../3-gcc-8_8.2.0-9ubuntu1_armhf.deb ... Unpacking gcc-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../4-cpp-8_8.2.0-9ubuntu1_armhf.deb ... Unpacking cpp-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../5-libgcc1_1%3a8.2.0-9ubuntu1_armhf.deb ... Unpacking libgcc1:armhf (1:8.2.0-9ubuntu1) over (1:8.2.0-7ubuntu1) ... Setting up libgcc1:armhf (1:8.2.0-9ubuntu1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libbinutils_2.31.1-7ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils-common_2.31.1-7ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils_2.31.1-7ubuntu1_armhf.deb ... Unpacking binutils (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils-arm-linux-gnueabihf_2.31.1-7ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../libselinux1_2.8-1build2_armhf.deb ... Unpacking libselinux1:armhf (2.8-1build2) over (2.8-1build1) ... Setting up libselinux1:armhf (2.8-1build2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-1build2_all.deb ... Unpacking libsemanage-common (2.8-1build2) over (2.8-1build1) ... Setting up libsemanage-common (2.8-1build2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-1build2_armhf.deb ... Unpacking libsemanage1:armhf (2.8-1build2) over (2.8-1build1) ... Setting up libsemanage1:armhf (2.8-1build2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libudev1_239-7ubuntu10.1_armhf.deb ... Unpacking libudev1:armhf (239-7ubuntu10.1) over (239-7ubuntu10) ... Setting up libudev1:armhf (239-7ubuntu10.1) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-3ubuntu2_armhf.deb ... Unpacking libseccomp2:armhf (2.3.3-3ubuntu2) over (2.3.3-3ubuntu1) ... Setting up libseccomp2:armhf (2.3.3-3ubuntu2) ... (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../0-libdevmapper1.02.1_2%3a1.02.145-4.1ubuntu4_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.145-4.1ubuntu4) over (2:1.02.145-4.1ubuntu3) ... Preparing to unpack .../1-dmsetup_2%3a1.02.145-4.1ubuntu4_armhf.deb ... Unpacking dmsetup (2:1.02.145-4.1ubuntu4) over (2:1.02.145-4.1ubuntu3) ... Preparing to unpack .../2-libsqlite3-0_3.25.3-1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.25.3-1) over (3.24.0-1) ... Preparing to unpack .../3-tzdata_2018g-1_all.deb ... Unpacking tzdata (2018g-1) over (2018e-1) ... Preparing to unpack .../4-g++_4%3a8.2.0-2ubuntu2_armhf.deb ... Unpacking g++ (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../5-gcc_4%3a8.2.0-2ubuntu2_armhf.deb ... Unpacking gcc (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../6-cpp_4%3a8.2.0-2ubuntu2_armhf.deb ... Unpacking cpp (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../7-linux-libc-dev_4.18.0-11.12_armhf.deb ... Unpacking linux-libc-dev:armhf (4.18.0-11.12) over (4.18.0-10.11) ... Preparing to unpack .../8-lockfile-progs_0.1.18_armhf.deb ... Unpacking lockfile-progs (0.1.18) over (0.1.17build1) ... Setting up cpp-8 (8.2.0-9ubuntu1) ... Setting up libgomp1:armhf (8.2.0-9ubuntu1) ... Setting up libatomic1:armhf (8.2.0-9ubuntu1) ... Setting up cpp (4:8.2.0-2ubuntu2) ... Setting up libcc1-0:armhf (8.2.0-9ubuntu1) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 9 20:55:22 UTC 2018. Universal Time is now: Fri Nov 9 20:55:22 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up linux-libc-dev:armhf (4.18.0-11.12) ... Setting up libdevmapper1.02.1:armhf (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm6:armhf (1.18.1-1) ... Setting up binutils-common:armhf (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:armhf (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:armhf (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:armhf (8.2.0-9ubuntu1) ... Setting up libubsan1:armhf (8.2.0-9ubuntu1) ... Setting up libbinutils:armhf (2.31.1-7ubuntu1) ... Setting up libperl5.28:armhf (5.28.0-3) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-7ubuntu1) ... Setting up perl (5.28.0-3) ... Setting up libgcc-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:armhf (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15635549 armhf disco-proposed -c chroot:build-PACKAGEBUILD-15635549 --arch=armhf --dist=disco-proposed --nolog rnahybrid_2.1.2-5.dsc Initiating build PACKAGEBUILD-15635549 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-011.buildd +==============================================================================+ | rnahybrid 2.1.2-5 (armhf) 09 Nov 2018 20:55 | +==============================================================================+ Package: rnahybrid Version: 2.1.2-5 Source Version: 2.1.2-5 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/rnahybrid-UHYKIc/rnahybrid-2.1.2' with '<>' I: NOTICE: Log filtering will replace 'build/rnahybrid-UHYKIc' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15635549/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- rnahybrid_2.1.2-5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-DGPnNH/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-DGPnNH/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DGPnNH/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-DGPnNH/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DGPnNH/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-DGPnNH/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (119 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-DGPnNH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libg2-dev Filtered Build-Depends: debhelper (>= 11~), libg2-dev dpkg-deb: building package 'sbuild-build-depends-rnahybrid-dummy' in '/<>/resolver-bFAT91/apt_archive/sbuild-build-depends-rnahybrid-dummy.deb'. Ign:1 copy:/<>/resolver-bFAT91/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bFAT91/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-bFAT91/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bFAT91/apt_archive ./ Sources [220 B] Get:5 copy:/<>/resolver-bFAT91/apt_archive ./ Packages [538 B] Fetched 2877 B in 0s (132 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install rnahybrid build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libg2-dev libg20 libgd3 libglib2.0-0 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtiff5 libtool libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db po-debconf ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libg2-dev libg20 libgd3 libglib2.0-0 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtiff5 libtool libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db po-debconf sbuild-build-depends-rnahybrid-dummy ucf 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 18.9 MB of archives. After this operation, 66.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bFAT91/apt_archive ./ sbuild-build-depends-rnahybrid-dummy 0.invalid.0 [868 B] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf libxau6 armhf 1:1.0.8-1 [7324 B] Get:3 http://ftpmaster.internal/ubuntu disco/main armhf libbsd0 armhf 0.9.1-1 [43.1 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf libpipeline1 armhf 1.5.0-2 [21.5 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main armhf man-db armhf 2.8.4-3 [1003 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libmagic-mgc armhf 1:5.34-2 [197 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf libmagic1 armhf 1:5.34-2 [65.3 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf file armhf 1:5.34-2 [21.9 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf libelf1 armhf 0.170-0.5.0ubuntu1 [40.8 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf libexpat1 armhf 2.2.6-1 [60.1 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-0 armhf 2.58.1-2 [1024 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libicu60 armhf 60.2-6ubuntu1 [7801 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libxml2 armhf 2.9.4+dfsg1-7ubuntu2 [533 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf ucf all 3.0038 [50.5 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf gettext-base armhf 0.19.8.1-8 [45.9 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf libxdmcp6 armhf 1:1.1.2-3 [9316 B] Get:19 http://ftpmaster.internal/ubuntu disco/main armhf libxcb1 armhf 1.13.1-1 [40.9 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf libx11-data all 2:1.6.7-1 [113 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf libx11-6 armhf 2:1.6.7-1 [515 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf m4 armhf 1.4.18-1ubuntu1 [186 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf autoconf all 2.69-11 [322 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main armhf automake all 1:1.16.1-4 [522 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf autopoint all 0.19.8.1-8 [412 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libtool all 2.4.6-6 [195 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf dh-autoreconf all 19 [16.1 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libarchive-zip-perl all 1.64-1 [84.9 kB] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dh-strip-nondeterminism all 0.044-1 [5124 B] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf dwz armhf 0.12-2 [72.0 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf gettext armhf 0.19.8.1-8 [833 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf po-debconf all 1.0.20 [232 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf debhelper all 11.3.2ubuntu1 [883 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libfreetype6 armhf 2.8.1-2ubuntu2 [280 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf libfontconfig1 armhf 2.13.0-5ubuntu3 [93.9 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg-turbo8 armhf 2.0.0-0ubuntu2 [90.0 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libtiff5 armhf 4.0.9+git181026-1 [139 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main armhf libxpm4 armhf 1:3.5.12-1 [29.0 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf libgd3 armhf 2.2.5-4ubuntu1 [98.2 kB] Get:50 http://ftpmaster.internal/ubuntu disco/universe armhf libg20 armhf 0.72-8 [32.0 kB] Get:51 http://ftpmaster.internal/ubuntu disco/universe armhf libg2-dev armhf 0.72-8 [183 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.9 MB in 1s (18.2 MB/s) Selecting previously unselected package libxau6:armhf. (Reading database ... 14274 files and directories currently installed.) Preparing to unpack .../00-libxau6_1%3a1.0.8-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../01-libbsd0_0.9.1-1_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.0-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.4-3_armhf.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.34-2_armhf.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../07-libmagic1_1%3a5.34-2_armhf.deb ... Unpacking libmagic1:armhf (1:5.34-2) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.34-2_armhf.deb ... Unpacking file (1:5.34-2) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../09-libelf1_0.170-0.5.0ubuntu1_armhf.deb ... Unpacking libelf1:armhf (0.170-0.5.0ubuntu1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../10-libexpat1_2.2.6-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../11-libglib2.0-0_2.58.1-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.1-2) ... Selecting previously unselected package libicu60:armhf. Preparing to unpack .../12-libicu60_60.2-6ubuntu1_armhf.deb ... Unpacking libicu60:armhf (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../13-libxml2_2.9.4+dfsg1-7ubuntu2_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7ubuntu2) ... Selecting previously unselected package ucf. Preparing to unpack .../14-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package gettext-base. Preparing to unpack .../15-gettext-base_0.19.8.1-8_armhf.deb ... Unpacking gettext-base (0.19.8.1-8) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../16-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../17-libxcb1_1.13.1-1_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../18-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../19-libx11-6_2%3a1.6.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.7-1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../20-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../21-m4_1.4.18-1ubuntu1_armhf.deb ... Unpacking m4 (1.4.18-1ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../22-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../23-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../24-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../25-autopoint_0.19.8.1-8_all.deb ... Unpacking autopoint (0.19.8.1-8) ... Selecting previously unselected package libtool. Preparing to unpack .../26-libtool_2.4.6-6_all.deb ... Unpacking libtool (2.4.6-6) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../27-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../28-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../29-libfile-stripnondeterminism-perl_0.044-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.044-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../30-dh-strip-nondeterminism_0.044-1_all.deb ... Unpacking dh-strip-nondeterminism (0.044-1) ... Selecting previously unselected package dwz. Preparing to unpack .../31-dwz_0.12-2_armhf.deb ... Unpacking dwz (0.12-2) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../32-libcroco3_0.6.12-2_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../33-gettext_0.19.8.1-8_armhf.deb ... Unpacking gettext (0.19.8.1-8) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../34-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../35-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../36-debhelper_11.3.2ubuntu1_all.deb ... Unpacking debhelper (11.3.2ubuntu1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../37-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../38-fontconfig-config_2.13.0-5ubuntu3_all.deb ... Unpacking fontconfig-config (2.13.0-5ubuntu3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../39-libfreetype6_2.8.1-2ubuntu2_armhf.deb ... Unpacking libfreetype6:armhf (2.8.1-2ubuntu2) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../40-libfontconfig1_2.13.0-5ubuntu3_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.0-5ubuntu3) ... Selecting previously unselected package libjpeg-turbo8:armhf. Preparing to unpack .../41-libjpeg-turbo8_2.0.0-0ubuntu2_armhf.deb ... Unpacking libjpeg-turbo8:armhf (2.0.0-0ubuntu2) ... Selecting previously unselected package libjpeg8:armhf. Preparing to unpack .../42-libjpeg8_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg8:armhf (8c-2ubuntu8) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../43-libjbig0_2.1-3.1build1_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1build1) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../44-libwebp6_0.6.1-2_armhf.deb ... Unpacking libwebp6:armhf (0.6.1-2) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../45-libtiff5_4.0.9+git181026-1_armhf.deb ... Unpacking libtiff5:armhf (4.0.9+git181026-1) ... Selecting previously unselected package libxpm4:armhf. Preparing to unpack .../46-libxpm4_1%3a3.5.12-1_armhf.deb ... Unpacking libxpm4:armhf (1:3.5.12-1) ... Selecting previously unselected package libgd3:armhf. Preparing to unpack .../47-libgd3_2.2.5-4ubuntu1_armhf.deb ... Unpacking libgd3:armhf (2.2.5-4ubuntu1) ... Selecting previously unselected package libg20. Preparing to unpack .../48-libg20_0.72-8_armhf.deb ... Unpacking libg20 (0.72-8) ... Selecting previously unselected package libg2-dev. Preparing to unpack .../49-libg2-dev_0.72-8_armhf.deb ... Unpacking libg2-dev (0.72-8) ... Selecting previously unselected package sbuild-build-depends-rnahybrid-dummy. Preparing to unpack .../50-sbuild-build-depends-rnahybrid-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-rnahybrid-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.2.6-1) ... Setting up libicu60:armhf (60.2-6ubuntu1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libjbig0:armhf (2.1-3.1build1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libelf1:armhf (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.58.1-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-8) ... Setting up libjpeg-turbo8:armhf (2.0.0-0ubuntu2) ... Setting up libpipeline1:armhf (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:armhf (0.9.1-1) ... Setting up ucf (3.0038) ... Setting up libxml2:armhf (2.9.4+dfsg1-7ubuntu2) ... Setting up libfreetype6:armhf (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:armhf (1:5.34-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-8) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up gettext (0.19.8.1-8) ... Setting up libtiff5:armhf (4.0.9+git181026-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:armhf (1.13.1-1) ... Setting up libtool (2.4.6-6) ... Setting up libfontconfig1:armhf (2.13.0-5ubuntu3) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libxpm4:armhf (1:3.5.12-1) ... Setting up libgd3:armhf (2.2.5-4ubuntu1) ... Setting up libg20 (0.72-8) ... Setting up libg2-dev (0.72-8) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-rnahybrid-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic arm64 (armv7l) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-arm-linux-gnueabihf_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig-config_2.13.0-5ubuntu3 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libfontconfig1_2.13.0-5ubuntu3 libfreetype6_2.8.1-2ubuntu2 libg2-dev_0.72-8 libg20_0.72-8 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgd3_2.2.5-4ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtiff5_4.0.9+git181026-1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-7ubuntu2 libxpm4_1:3.5.12-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rnahybrid-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Oct 30 10:33:44 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rnahybrid_2.1.2-5.dsc dpkg-source: info: extracting rnahybrid in rnahybrid-2.1.2 dpkg-source: info: unpacking rnahybrid_2.1.2.orig.tar.gz dpkg-source: info: unpacking rnahybrid_2.1.2-5.debian.tar.xz dpkg-source: info: applying gcc-4.8.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fixmanpage.patch dpkg-source: info: applying mayhem_check_if_file_exists.patch dpkg-source: info: applying fix_loop_index.patch dpkg-source: info: applying fix_warnings.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15635549 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15635549 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15635549 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package rnahybrid dpkg-buildpackage: info: source version 2.1.2-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build rnahybrid-2.1.2 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:12: installing './compile' src/Makefile.am:62: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' dh_auto_configure -a ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for log in -lm... yes checking for g2_open_vd in -lg2... yes checking for gdImageLine in -lgd... no checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking g2.h usability... yes checking g2.h presence... yes checking for g2.h... yes checking g2_PS.h usability... yes checking g2_PS.h presence... yes checking for g2_PS.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnahybrid.o rnahybrid.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hybrid_core.o hybrid_core.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o energy.o energy.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o input.o input.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta.o fasta.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o plot.o plot.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnacalibrate.o rnacalibrate.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o numerical.o numerical.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o random.o random.c random.c: In function ‘random_sequence’: random.c:75:29: warning: implicit declaration of function ‘calloc’ [-Wimplicit-function-declaration] char *sequence = (char *) calloc(seqlen+1,sizeof(char)); ^~~~~~ random.c:75:29: warning: incompatible implicit declaration of built-in function ‘calloc’ random.c:75:29: note: include ‘’ or provide a declaration of ‘calloc’ random.c:17:1: +#include random.c:75:29: char *sequence = (char *) calloc(seqlen+1,sizeof(char)); ^~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-1.o mt19937-1.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnaeffective.o rnaeffective.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o RNAhybrid rnahybrid.o hybrid_core.o energy.o input.o fasta.o plot.o -lg2 -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o RNAeffective rnaeffective.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lg2 -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o RNAcalibrate rnacalibrate.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lg2 -lm make[3]: Leaving directory '/<>/src' Making all in man make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/man' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' src/RNAhybrid -s 3utr_worm -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.064406 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAcalibrate -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 16 2.011619 0.214309 src/RNAhybrid -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.052460 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAhybrid -f 2,7 -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -27.3 kcal/mol p-value: 0.070821 position 1189 target 5' C AU U C 3' CUGUAUA GCCU CUACCUC GAUAUGU UGGA GAUGGAG miRNA 3' UU U U 5' src/RNAcalibrate -f 2,7 -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 16 1.020771 0.449235 src/RNAhybrid -s 3utr_worm -t examples/cbr-hbl-1.fasta -q examples/cel-let-7.fasta target: ENSCBRT00000006770.1|ENSCBRG00000005546.1 length: 1449 miRNA : cel-let-7 length: 22 mfe: -28.3 kcal/mol p-value: 0.060792 position 1333 target 5' C GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAeffective -k 30 -s -t examples/hbl-1.fasta -q examples/cel-let-7.fasta 1.000000 1.113228 1.100000 0.782420 1.200000 0.492987 1.300000 0.352618 1.400000 0.254105 1.500000 0.224041 1.600000 0.280014 1.700000 0.387851 1.800000 0.486994 1.900000 0.733164 2.000000 0.991372 Effective number: 1.500000 make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/debian/rnahybrid AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/rnahybrid/usr/bin' /usr/bin/install -c RNAhybrid RNAcalibrate RNAeffective '/<>/debian/rnahybrid/usr/bin' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in man make[2]: Entering directory '/<>/man' make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/rnahybrid/usr/share/man/man1' /usr/bin/install -c -m 644 RNAhybrid.1 RNAcalibrate.1 RNAeffective.1 '/<>/debian/rnahybrid/usr/share/man/man1' make[3]: Leaving directory '/<>/man' make[2]: Leaving directory '/<>/man' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing rnahybrid (in debian/rnahybrid); do_strip: , oemstrip: pkgstriptranslations: processing rnahybrid-dbgsym (in debian/.debhelper/rnahybrid/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/rnahybrid/DEBIAN/control, package rnahybrid, directory debian/rnahybrid pkgstripfiles: processing control file: debian/.debhelper/rnahybrid/dbgsym-root/DEBIAN/control, package rnahybrid-dbgsym, directory debian/.debhelper/rnahybrid/dbgsym-root dpkg-deb: building package 'rnahybrid-dbgsym' in 'debian/.debhelper/scratch-space/build-rnahybrid/rnahybrid-dbgsym_2.1.2-5_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package rnahybrid ... pkgstripfiles: No PNG files. dpkg-deb: building package 'rnahybrid' in '../rnahybrid_2.1.2-5_armhf.deb'. Renaming rnahybrid-dbgsym_2.1.2-5_armhf.deb to rnahybrid-dbgsym_2.1.2-5_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../rnahybrid_2.1.2-5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build rnahybrid-2.1.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-2232 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ rnahybrid_2.1.2-5_armhf.changes: -------------------------------- Format: 1.8 Date: Tue, 30 Oct 2018 11:29:39 +0100 Source: rnahybrid Binary: rnahybrid Architecture: armhf Version: 2.1.2-5 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: rnahybrid - Fast and effective prediction of microRNA/target duplexes Changes: rnahybrid (2.1.2-5) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright Checksums-Sha1: c3dec836c6447a596e0306b08132e6acf5217409 353520 rnahybrid-dbgsym_2.1.2-5_armhf.ddeb 03a8d30dedd4528c635d73c31728b747350dbb04 5366 rnahybrid_2.1.2-5_armhf.buildinfo 9facdf537522661765552e1ecac78942c184b137 134436 rnahybrid_2.1.2-5_armhf.deb Checksums-Sha256: 9bd2672d171a0542a491ad64bdd456b8c3fd4fd3dbed798d006aaa6ac2563561 353520 rnahybrid-dbgsym_2.1.2-5_armhf.ddeb e88213a1b189a5b2cb8923225cfd39419a671c72b993f5f945b7abc16943174b 5366 rnahybrid_2.1.2-5_armhf.buildinfo bce1f9dde26a808b60bd4b170845a22c78a25f1095acf2da2f3a102d46663770 134436 rnahybrid_2.1.2-5_armhf.deb Files: 34f6f8382864063741f73c3cc2e1a57d 353520 debug optional rnahybrid-dbgsym_2.1.2-5_armhf.ddeb cc8e157a639316b8829bb01841e526e9 5366 science optional rnahybrid_2.1.2-5_armhf.buildinfo 4105633cc1d93155a393dd8db7d2a3c8 134436 science optional rnahybrid_2.1.2-5_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ rnahybrid_2.1.2-5_armhf.deb --------------------------- new debian package, version 2.0. size 134436 bytes: control archive=1400 bytes. 764 bytes, 15 lines control 1705 bytes, 23 lines md5sums Package: rnahybrid Version: 2.1.2-5 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 862 Depends: libc6 (>= 2.7), libg20 Section: science Priority: optional Homepage: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html Description: Fast and effective prediction of microRNA/target duplexes RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. The short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction. drwxr-xr-x root/root 0 2018-10-30 10:29 ./ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/bin/ -rwxr-xr-x root/root 279980 2018-10-30 10:29 ./usr/bin/RNAcalibrate -rwxr-xr-x root/root 279980 2018-10-30 10:29 ./usr/bin/RNAeffective -rwxr-xr-x root/root 275876 2018-10-30 10:29 ./usr/bin/RNAhybrid drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/rnahybrid/ -rw-r--r-- root/root 154 2004-02-10 17:18 ./usr/share/doc/rnahybrid/AUTHORS -rw-r--r-- root/root 2047 2013-08-25 13:45 ./usr/share/doc/rnahybrid/README.gz -rw-r--r-- root/root 261 2018-10-30 10:29 ./usr/share/doc/rnahybrid/README.test -rw-r--r-- root/root 1255 2018-10-30 10:29 ./usr/share/doc/rnahybrid/changelog.Debian.gz -rw-r--r-- root/root 2500 2018-10-30 10:29 ./usr/share/doc/rnahybrid/copyright drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/rnahybrid/examples/ -rw-r--r-- root/root 277 2004-03-01 15:37 ./usr/share/doc/rnahybrid/examples/3UTR_fly.freq -rw-r--r-- root/root 274 2004-03-01 15:54 ./usr/share/doc/rnahybrid/examples/3UTR_human.freq -rw-r--r-- root/root 270 2004-03-01 15:51 ./usr/share/doc/rnahybrid/examples/3UTR_worm.freq -rw-r--r-- root/root 1573 2013-08-25 13:10 ./usr/share/doc/rnahybrid/examples/cbr-hbl-1.fasta -rw-r--r-- root/root 1552 2013-08-25 13:10 ./usr/share/doc/rnahybrid/examples/cel-hbl-1.fasta -rw-r--r-- root/root 34 2004-11-15 20:11 ./usr/share/doc/rnahybrid/examples/cel-let-7.fasta -rw-r--r-- root/root 286 2004-03-23 11:53 ./usr/share/doc/rnahybrid/examples/coding_fly.freq -rw-r--r-- root/root 281 2004-03-11 12:59 ./usr/share/doc/rnahybrid/examples/coding_worm.freq -rw-r--r-- root/root 3125 2004-11-15 19:43 ./usr/share/doc/rnahybrid/examples/hbl-1.fasta -rw-r--r-- root/root 1438 2011-04-27 09:12 ./usr/share/doc/rnahybrid/examples/hunchback_related.fasta -rw-r--r-- root/root 30 2011-04-27 09:12 ./usr/share/doc/rnahybrid/examples/let-7.fasta -rw-r--r-- root/root 781 2018-10-30 10:29 ./usr/share/doc/rnahybrid/run-unit-test drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/man/man1/ -rw-r--r-- root/root 1721 2018-10-30 10:29 ./usr/share/man/man1/RNAcalibrate.1.gz -rw-r--r-- root/root 1599 2018-10-30 10:29 ./usr/share/man/man1/RNAeffective.1.gz -rw-r--r-- root/root 2517 2018-10-30 10:29 ./usr/share/man/man1/RNAhybrid.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 7228 Build-Time: 5824 Distribution: disco-proposed Host Architecture: armhf Install-Time: 21 Job: rnahybrid_2.1.2-5.dsc Machine Architecture: arm64 Package: rnahybrid Package-Time: 5847 Source-Version: 2.1.2-5 Space: 7228 Status: successful Version: 2.1.2-5 -------------------------------------------------------------------------------- Finished at 20181109-2232 Build needed 01:37:27, 7228k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15635549 Scanning for processes to kill in build PACKAGEBUILD-15635549