https://launchpad.net/ubuntu/+source/rnahybrid/2.1.2-5/+build/15635552 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-004 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:07 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 14:33:32 ntpdate[1747]: adjust time server 10.211.37.1 offset 0.069989 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15635552 /home/buildd/filecache-default/b787115693f003366e910ff6bedae3977a7b9dc5 Creating target for build PACKAGEBUILD-15635552 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15635552 Starting target for build PACKAGEBUILD-15635552 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15635552 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15635552 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15635552 Updating target for build PACKAGEBUILD-15635552 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main s390x Packages [951 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe s390x Packages [8352 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5039 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main s390x Packages [112 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [72.4 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe s390x Packages [579 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [394 kB] Fetched 16.5 MB in 3s (4989 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-common binutils-s390x-linux-gnu cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libitm1 libkmod2 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 52 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 38.1 MB of archives. After this operation, 48.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main s390x base-files s390x 10.1ubuntu8 [60.0 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main s390x dash s390x 0.5.10.2-1 [86.9 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main s390x findutils s390x 4.6.0+git+20181018-1 [288 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main s390x hostname s390x 3.21 [10.9 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main s390x perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main s390x libgdbm6 s390x 1.18.1-1 [27.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main s390x libgdbm-compat4 s390x 1.18.1-1 [6256 B] Get:8 http://ftpmaster.internal/ubuntu disco/main s390x libperl5.28 s390x 5.28.0-3 [3655 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main s390x perl s390x 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main s390x perl-base s390x 5.28.0-3 [1418 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.2 [607 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main s390x sed s390x 4.5-2 [183 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main s390x init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main s390x systemd-sysv s390x 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main s390x libapparmor1 s390x 2.12-4ubuntu10 [28.6 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main s390x libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main s390x libcap-ng0 s390x 0.7.9-1build1 [10.6 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main s390x libaudit1 s390x 1:2.8.3-1ubuntu3 [37.0 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libgpg-error0 s390x 1.32-3 [52.3 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libkmod2 s390x 25-1ubuntu1.1 [37.9 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main s390x systemd s390x 239-7ubuntu10.1 [2666 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libsystemd0 s390x 239-7ubuntu10.1 [191 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main s390x init s390x 1.55 [6480 B] Get:24 http://ftpmaster.internal/ubuntu disco/main s390x libcc1-0 s390x 8.2.0-9ubuntu1 [37.1 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main s390x libgomp1 s390x 8.2.0-9ubuntu1 [69.9 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main s390x libitm1 s390x 8.2.0-9ubuntu1 [26.9 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main s390x libatomic1 s390x 8.2.0-9ubuntu1 [8428 B] Get:28 http://ftpmaster.internal/ubuntu disco/main s390x libasan5 s390x 8.2.0-9ubuntu1 [326 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main s390x libubsan1 s390x 8.2.0-9ubuntu1 [115 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main s390x gcc-8-base s390x 8.2.0-9ubuntu1 [18.6 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main s390x libstdc++6 s390x 8.2.0-9ubuntu1 [398 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main s390x g++-8 s390x 8.2.0-9ubuntu1 [6359 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main s390x libstdc++-8-dev s390x 8.2.0-9ubuntu1 [1503 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main s390x libgcc-8-dev s390x 8.2.0-9ubuntu1 [650 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main s390x gcc-8 s390x 8.2.0-9ubuntu1 [6264 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main s390x cpp-8 s390x 8.2.0-9ubuntu1 [5503 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main s390x libgcc1 s390x 1:8.2.0-9ubuntu1 [25.1 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main s390x libbinutils s390x 2.31.1-7ubuntu1 [304 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main s390x binutils-common s390x 2.31.1-7ubuntu1 [194 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main s390x binutils s390x 2.31.1-7ubuntu1 [3328 B] Get:41 http://ftpmaster.internal/ubuntu disco/main s390x binutils-s390x-linux-gnu s390x 2.31.1-7ubuntu1 [1678 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main s390x libselinux1 s390x 2.8-1build2 [63.8 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main s390x libsemanage-common all 2.8-1build2 [6892 B] Get:44 http://ftpmaster.internal/ubuntu disco/main s390x libsemanage1 s390x 2.8-1build2 [78.6 kB] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libudev1 s390x 239-7ubuntu10.1 [49.7 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libseccomp2 s390x 2.3.3-3ubuntu2 [40.3 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libdevmapper1.02.1 s390x 2:1.02.145-4.1ubuntu4 [122 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main s390x dmsetup s390x 2:1.02.145-4.1ubuntu4 [73.0 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main s390x libsqlite3-0 s390x 3.25.3-1 [491 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main s390x tzdata all 2018g-1 [188 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main s390x g++ s390x 4:8.2.0-2ubuntu2 [1604 B] Get:52 http://ftpmaster.internal/ubuntu disco/main s390x gcc s390x 4:8.2.0-2ubuntu2 [5208 B] Get:53 http://ftpmaster.internal/ubuntu disco/main s390x cpp s390x 4:8.2.0-2ubuntu2 [27.6 kB] Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main s390x linux-libc-dev s390x 4.18.0-11.12 [1037 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main s390x lockfile-progs s390x 0.1.18 [9564 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.1 MB in 1s (39.4 MB/s) (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_s390x.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_s390x.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_s390x.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../hostname_3.21_s390x.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_s390x.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... 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Preparing to unpack .../8-lockfile-progs_0.1.18_s390x.deb ... Unpacking lockfile-progs (0.1.18) over (0.1.17build1) ... Setting up cpp-8 (8.2.0-9ubuntu1) ... Setting up libgomp1:s390x (8.2.0-9ubuntu1) ... Setting up libatomic1:s390x (8.2.0-9ubuntu1) ... Setting up cpp (4:8.2.0-2ubuntu2) ... Setting up libcc1-0:s390x (8.2.0-9ubuntu1) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 9 14:33:48 UTC 2018. Universal Time is now: Fri Nov 9 14:33:48 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up linux-libc-dev:s390x (4.18.0-11.12) ... Setting up libdevmapper1.02.1:s390x (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm6:s390x (1.18.1-1) ... Setting up binutils-common:s390x (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:s390x (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:s390x (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:s390x (8.2.0-9ubuntu1) ... Setting up libitm1:s390x (8.2.0-9ubuntu1) ... Setting up libubsan1:s390x (8.2.0-9ubuntu1) ... Setting up libbinutils:s390x (2.31.1-7ubuntu1) ... Setting up libperl5.28:s390x (5.28.0-3) ... Setting up binutils-s390x-linux-gnu (2.31.1-7ubuntu1) ... Setting up perl (5.28.0-3) ... Setting up libgcc-8-dev:s390x (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:s390x (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15635552 s390x disco-proposed -c chroot:build-PACKAGEBUILD-15635552 --arch=s390x --dist=disco-proposed --nolog rnahybrid_2.1.2-5.dsc Initiating build PACKAGEBUILD-15635552 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:07 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-004.buildd +==============================================================================+ | rnahybrid 2.1.2-5 (s390x) 09 Nov 2018 14:33 | +==============================================================================+ Package: rnahybrid Version: 2.1.2-5 Source Version: 2.1.2-5 Distribution: disco-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/rnahybrid-ee0c7l/rnahybrid-2.1.2' with '<>' I: NOTICE: Log filtering will replace 'build/rnahybrid-ee0c7l' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15635552/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- rnahybrid_2.1.2-5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Wy9B4i/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Wy9B4i/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Wy9B4i/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Wy9B4i/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Wy9B4i/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Wy9B4i/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Wy9B4i/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14310 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libg2-dev Filtered Build-Depends: debhelper (>= 11~), libg2-dev dpkg-deb: building package 'sbuild-build-depends-rnahybrid-dummy' in '/<>/resolver-xg6TXQ/apt_archive/sbuild-build-depends-rnahybrid-dummy.deb'. Ign:1 copy:/<>/resolver-xg6TXQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xg6TXQ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-xg6TXQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xg6TXQ/apt_archive ./ Sources [220 B] Get:5 copy:/<>/resolver-xg6TXQ/apt_archive ./ Packages [540 B] Fetched 2879 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install rnahybrid build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libg2-dev libg20 libgd3 libglib2.0-0 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtiff5 libtool libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db po-debconf ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libg2-dev libg20 libgd3 libglib2.0-0 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtiff5 libtool libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db po-debconf sbuild-build-depends-rnahybrid-dummy ucf 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After this operation, 75.0 MB of additional disk space will be used. 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Setting up libpipeline1:s390x (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:s390x (0.9.1-1) ... Setting up ucf (3.0038) ... Setting up libxml2:s390x (2.9.4+dfsg1-7ubuntu2) ... Setting up libfreetype6:s390x (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:s390x (1:5.34-2) ... Setting up libcroco3:s390x (0.6.12-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libxdmcp6:s390x (1:1.1.2-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:s390x (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-8) ... Setting up libwebp6:s390x (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up gettext (0.19.8.1-8) ... Setting up libtiff5:s390x (4.0.9+git181026-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:s390x (1.13.1-1) ... Setting up libtool (2.4.6-6) ... Setting up libfontconfig1:s390x (2.13.0-5ubuntu3) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:s390x (2:1.6.7-1) ... Setting up libxpm4:s390x (1:3.5.12-1) ... Setting up libgd3:s390x (2.2.5-4ubuntu1) ... Setting up libg20 (0.72-8) ... Setting up libg2-dev (0.72-8) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-rnahybrid-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic s390x (s390x) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 binutils-s390x-linux-gnu_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig-config_2.13.0-5ubuntu3 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libfontconfig1_2.13.0-5ubuntu3 libfreetype6_2.8.1-2ubuntu2 libg2-dev_0.72-8 libg20_0.72-8 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgd3_2.2.5-4ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-9ubuntu1 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtiff5_4.0.9+git181026-1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu2 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-7ubuntu2 libxpm4_1:3.5.12-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rnahybrid-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Oct 30 10:33:44 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rnahybrid_2.1.2-5.dsc dpkg-source: info: extracting rnahybrid in rnahybrid-2.1.2 dpkg-source: info: unpacking rnahybrid_2.1.2.orig.tar.gz dpkg-source: info: unpacking rnahybrid_2.1.2-5.debian.tar.xz dpkg-source: info: applying gcc-4.8.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fixmanpage.patch dpkg-source: info: applying mayhem_check_if_file_exists.patch dpkg-source: info: applying fix_loop_index.patch dpkg-source: info: applying fix_warnings.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15635552 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15635552 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15635552 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package rnahybrid dpkg-buildpackage: info: source version 2.1.2-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build rnahybrid-2.1.2 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:12: installing './compile' src/Makefile.am:62: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' dh_auto_configure -a ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for log in -lm... yes checking for g2_open_vd in -lg2... yes checking for gdImageLine in -lgd... no checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking g2.h usability... yes checking g2.h presence... yes checking for g2.h... yes checking g2_PS.h usability... yes checking g2_PS.h presence... yes checking for g2_PS.h... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnahybrid.o rnahybrid.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hybrid_core.o hybrid_core.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o energy.o energy.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o input.o input.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta.o fasta.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o plot.o plot.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnacalibrate.o rnacalibrate.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o numerical.o numerical.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o random.o random.c random.c: In function ‘random_sequence’: random.c:75:29: warning: implicit declaration of function ‘calloc’ [-Wimplicit-function-declaration] char *sequence = (char *) calloc(seqlen+1,sizeof(char)); ^~~~~~ random.c:75:29: warning: incompatible implicit declaration of built-in function ‘calloc’ random.c:75:29: note: include ‘’ or provide a declaration of ‘calloc’ random.c:17:1: +#include random.c:75:29: char *sequence = (char *) calloc(seqlen+1,sizeof(char)); ^~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mt19937-1.o mt19937-1.c gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rnaeffective.o rnaeffective.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o RNAhybrid rnahybrid.o hybrid_core.o energy.o input.o fasta.o plot.o -lg2 -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o RNAcalibrate rnacalibrate.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lg2 -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o RNAeffective rnaeffective.o hybrid_core.o numerical.o energy.o input.o fasta.o random.o mt19937-1.o plot.o -lg2 -lm make[3]: Leaving directory '/<>/src' Making all in man make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/man' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' src/RNAhybrid -s 3utr_worm -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.064406 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAcalibrate -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 12 2.075407 0.131018 src/RNAhybrid -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -28.2 kcal/mol p-value: 0.052460 position 1265 target 5' U GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAhybrid -f 2,7 -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta target: F13D11.2.1|F13D11.2.1 length: 1458 miRNA : cel-let-7 length: 22 mfe: -27.3 kcal/mol p-value: 0.070821 position 1189 target 5' C AU U C 3' CUGUAUA GCCU CUACCUC GAUAUGU UGGA GAUGGAG miRNA 3' UU U U 5' src/RNAcalibrate -f 2,7 -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta cel-let-7 6 1.444359 0.210088 src/RNAhybrid -s 3utr_worm -t examples/cbr-hbl-1.fasta -q examples/cel-let-7.fasta target: ENSCBRT00000006770.1|ENSCBRG00000005546.1 length: 1449 miRNA : cel-let-7 length: 22 mfe: -28.3 kcal/mol p-value: 0.060792 position 1333 target 5' C GUU C A 3' AUUAUACAACC C ACCUCA UGAUAUGUUGG G UGGAGU miRNA 3' U AU A 5' src/RNAeffective -k 30 -s -t examples/hbl-1.fasta -q examples/cel-let-7.fasta 1.000000 1.092844 1.100000 0.717666 1.200000 0.479916 1.300000 0.322304 1.400000 0.236619 1.500000 0.213706 1.600000 0.230361 1.700000 0.351131 1.800000 0.482940 1.900000 0.670283 2.000000 0.837613 Effective number: 1.500000 make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/debian/rnahybrid AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/rnahybrid/usr/bin' /usr/bin/install -c RNAhybrid RNAcalibrate RNAeffective '/<>/debian/rnahybrid/usr/bin' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in man make[2]: Entering directory '/<>/man' make[3]: Entering directory '/<>/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/rnahybrid/usr/share/man/man1' /usr/bin/install -c -m 644 RNAhybrid.1 RNAcalibrate.1 RNAeffective.1 '/<>/debian/rnahybrid/usr/share/man/man1' make[3]: Leaving directory '/<>/man' make[2]: Leaving directory '/<>/man' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing rnahybrid (in debian/rnahybrid); do_strip: , oemstrip: pkgstriptranslations: processing rnahybrid-dbgsym (in debian/.debhelper/rnahybrid/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/rnahybrid/DEBIAN/control, package rnahybrid, directory debian/rnahybrid pkgstripfiles: Running PNG optimization (using 4 cpus) for package rnahybrid ... pkgstripfiles: No PNG files. dpkg-deb: building package 'rnahybrid' in '../rnahybrid_2.1.2-5_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/rnahybrid/dbgsym-root/DEBIAN/control, package rnahybrid-dbgsym, directory debian/.debhelper/rnahybrid/dbgsym-root dpkg-deb: building package 'rnahybrid-dbgsym' in 'debian/.debhelper/scratch-space/build-rnahybrid/rnahybrid-dbgsym_2.1.2-5_s390x.deb'. Renaming rnahybrid-dbgsym_2.1.2-5_s390x.deb to rnahybrid-dbgsym_2.1.2-5_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../rnahybrid_2.1.2-5_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build rnahybrid-2.1.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-1436 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ rnahybrid_2.1.2-5_s390x.changes: -------------------------------- Format: 1.8 Date: Tue, 30 Oct 2018 11:29:39 +0100 Source: rnahybrid Binary: rnahybrid Architecture: s390x Version: 2.1.2-5 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: rnahybrid - Fast and effective prediction of microRNA/target duplexes Changes: rnahybrid (2.1.2-5) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright Checksums-Sha1: 8d278a806b31f78188ec8913b1a63f2c90c9a60d 259384 rnahybrid-dbgsym_2.1.2-5_s390x.ddeb 7a417ce29be37e474f6f548d937cfdfd10e2d260 5353 rnahybrid_2.1.2-5_s390x.buildinfo 4854bd40facbf13a40b0b2fe593c19606852c51b 109184 rnahybrid_2.1.2-5_s390x.deb Checksums-Sha256: b63db55179953cf36ad71a426d7936a6e862bc5c7b3d7505438c863d37501de5 259384 rnahybrid-dbgsym_2.1.2-5_s390x.ddeb 65f3cce9fdf46fc7bb16a92bd80b91ed3450d0fff92b4abcf903b8b3b1257de5 5353 rnahybrid_2.1.2-5_s390x.buildinfo 9bb445cb4f70ee45de5b70410a0df6c1da897000e7d60ebb3c8dbf15d3a4debe 109184 rnahybrid_2.1.2-5_s390x.deb Files: b86e09a903c2f175451f5f98d83be655 259384 debug optional rnahybrid-dbgsym_2.1.2-5_s390x.ddeb da35f929149c744f2e6bd1069aa623a0 5353 science optional rnahybrid_2.1.2-5_s390x.buildinfo 8579d139baec297137c0574aa1b539b7 109184 science optional rnahybrid_2.1.2-5_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ rnahybrid_2.1.2-5_s390x.deb --------------------------- new debian package, version 2.0. size 109184 bytes: control archive=1400 bytes. 764 bytes, 15 lines control 1705 bytes, 23 lines md5sums Package: rnahybrid Version: 2.1.2-5 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 750 Depends: libc6 (>= 2.7), libg20 Section: science Priority: optional Homepage: http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/submission.html Description: Fast and effective prediction of microRNA/target duplexes RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA. The hybridisation is performed in a kind of domain mode, ie. The short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction. drwxr-xr-x root/root 0 2018-10-30 10:29 ./ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/bin/ -rwxr-xr-x root/root 243648 2018-10-30 10:29 ./usr/bin/RNAcalibrate -rwxr-xr-x root/root 243648 2018-10-30 10:29 ./usr/bin/RNAeffective -rwxr-xr-x root/root 235448 2018-10-30 10:29 ./usr/bin/RNAhybrid drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/rnahybrid/ -rw-r--r-- root/root 154 2004-02-10 17:18 ./usr/share/doc/rnahybrid/AUTHORS -rw-r--r-- root/root 2047 2013-08-25 13:45 ./usr/share/doc/rnahybrid/README.gz -rw-r--r-- root/root 261 2018-10-30 10:29 ./usr/share/doc/rnahybrid/README.test -rw-r--r-- root/root 1255 2018-10-30 10:29 ./usr/share/doc/rnahybrid/changelog.Debian.gz -rw-r--r-- root/root 2500 2018-10-30 10:29 ./usr/share/doc/rnahybrid/copyright drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/doc/rnahybrid/examples/ -rw-r--r-- root/root 277 2004-03-01 15:37 ./usr/share/doc/rnahybrid/examples/3UTR_fly.freq -rw-r--r-- root/root 274 2004-03-01 15:54 ./usr/share/doc/rnahybrid/examples/3UTR_human.freq -rw-r--r-- root/root 270 2004-03-01 15:51 ./usr/share/doc/rnahybrid/examples/3UTR_worm.freq -rw-r--r-- root/root 1573 2013-08-25 13:10 ./usr/share/doc/rnahybrid/examples/cbr-hbl-1.fasta -rw-r--r-- root/root 1552 2013-08-25 13:10 ./usr/share/doc/rnahybrid/examples/cel-hbl-1.fasta -rw-r--r-- root/root 34 2004-11-15 20:11 ./usr/share/doc/rnahybrid/examples/cel-let-7.fasta -rw-r--r-- root/root 286 2004-03-23 11:53 ./usr/share/doc/rnahybrid/examples/coding_fly.freq -rw-r--r-- root/root 281 2004-03-11 12:59 ./usr/share/doc/rnahybrid/examples/coding_worm.freq -rw-r--r-- root/root 3125 2004-11-15 19:43 ./usr/share/doc/rnahybrid/examples/hbl-1.fasta -rw-r--r-- root/root 1438 2011-04-27 09:12 ./usr/share/doc/rnahybrid/examples/hunchback_related.fasta -rw-r--r-- root/root 30 2011-04-27 09:12 ./usr/share/doc/rnahybrid/examples/let-7.fasta -rw-r--r-- root/root 781 2018-10-30 10:29 ./usr/share/doc/rnahybrid/run-unit-test drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-30 10:29 ./usr/share/man/man1/ -rw-r--r-- root/root 1721 2018-10-30 10:29 ./usr/share/man/man1/RNAcalibrate.1.gz -rw-r--r-- root/root 1599 2018-10-30 10:29 ./usr/share/man/man1/RNAeffective.1.gz -rw-r--r-- root/root 2517 2018-10-30 10:29 ./usr/share/man/man1/RNAhybrid.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 6792 Build-Time: 124 Distribution: disco-proposed Host Architecture: s390x Install-Time: 7 Job: rnahybrid_2.1.2-5.dsc Machine Architecture: s390x Package: rnahybrid Package-Time: 132 Source-Version: 2.1.2-5 Space: 6792 Status: successful Version: 2.1.2-5 -------------------------------------------------------------------------------- Finished at 20181109-1436 Build needed 00:02:12, 6792k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=s390x PACKAGEBUILD-15635552 Scanning for processes to kill in build PACKAGEBUILD-15635552