RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-32 3.13.0-86-generic #130-Ubuntu SMP Mon Apr 18 18:27:15 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.6 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.22. Syncing the system clock with the buildd NTP service... 11 May 11:32:22 ntpdate[1661]: adjust time server 10.211.37.1 offset 0.001479 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9724924', '/home/buildd/filecache-default/063eeb43ee0a3186cd7a3c6a3a452f2f4c9a8d95'] Unpacking chroot for build PACKAGEBUILD-9724924 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9724924'] Mounting chroot for build PACKAGEBUILD-9724924 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9724924', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9724924 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9724924', 'amd64'] Updating debian chroot for build PACKAGEBUILD-9724924 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 Packages [1201 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [568 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe amd64 Packages [7636 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4421 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main amd64 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe amd64 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main amd64 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe amd64 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 Packages [40.6 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [17.2 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 Packages [152 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [82.6 kB] Fetched 14.6 MB in 6s (2204 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 The following packages will be upgraded: apt apt-transport-https bash binutils bzip2 cpp-5 debconf dmsetup dpkg dpkg-dev g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers initscripts libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libbz2-1.0 libcc1-0 libcilkrts5 libdevmapper1.02.1 libdpkg-perl libgcc-5-dev libgcc1 libgcrypt20 libgomp1 libgpg-error0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libldap-2.4-2 liblsan0 libmpx0 libperl5.22 libpng12-0 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libusb-0.1-4 libwind0-heimdal linux-libc-dev make optipng perl perl-base perl-modules-5.22 policyrcd-script-zg2 sed systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata zlib1g 79 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 100 MB of archives. After this operation, 243 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main amd64 bash amd64 4.3-14ubuntu2 [593 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg amd64 1.18.4ubuntu2 [2102 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 grep amd64 2.25-1 [153 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 hostname amd64 3.17ubuntu1 [11.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-modules-5.22 all 5.22.2-1 [2642 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 libperl5.22 amd64 5.22.2-1 [3391 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl amd64 5.22.2-1 [237 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-base amd64 5.22.2-1 [1300 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 bzip2 amd64 1.0.6-8build1 [33.5 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-1.0 amd64 1.0.6-8build1 [30.6 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu5 [51.1 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 init-system-helpers all 1.33ubuntu1 [31.9 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 init amd64 1.33ubuntu1 [4388 B] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 sed amd64 4.2.2-7.1 [140 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 tar amd64 1.28-2.2 [216 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 gcc-6-base amd64 6.1.1-2ubuntu12 [16.9 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgcc1 amd64 1:6.1.1-2ubuntu12 [38.6 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libstdc++6 amd64 6.1.1-2ubuntu12 [400 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 libapt-pkg5.0 amd64 1.2.11 [698 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt amd64 1.2.11 [1036 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 debconf all 1.5.59ubuntu1 [136 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysvinit-utils amd64 2.88dsf-59.3ubuntu5 [21.8 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysv-rc all 2.88dsf-59.3ubuntu5 [18.2 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 initscripts amd64 2.88dsf-59.3ubuntu5 [24.5 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgpg-error0 amd64 1.22-1 [34.4 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libselinux1 amd64 2.5-2 [65.2 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsystemd0 amd64 229-5ubuntu1 [210 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd amd64 229-5ubuntu1 [3643 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd-sysv amd64 229-5ubuntu1 [17.8 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 libudev1 amd64 229-5ubuntu1 [60.4 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdevmapper1.02.1 amd64 2:1.02.122-1ubuntu1 [148 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcrypt20 amd64 1.7.0-2 [397 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsepol1 amd64 2.5-1 [216 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libsemanage-common all 2.5-1 [6800 B] Get:35 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libsemanage1 amd64 2.5-1 [80.3 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main amd64 libusb-0.1-4 amd64 2:0.1.12-30 [17.2 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 tzdata all 2016d-2 [168 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main amd64 libslang2 amd64 2.3.0-2.3ubuntu1 [414 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtasn1-6 amd64 4.8-1 [42.5 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt-transport-https amd64 1.2.11 [25.7 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160418+dfsg-3 [41.2 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160418+dfsg-3 [174 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160418+dfsg-3 [29.4 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160418+dfsg-3 [87.9 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160418+dfsg-3 [47.9 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160418+dfsg-3 [107 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160418+dfsg-3 [203 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160418+dfsg-3 [15.1 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160418+dfsg-3 [96.6 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [14.5 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [48.7 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu4 [161 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpng16-16 amd64 1.6.21-4 [172 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main amd64 binutils amd64 2.26-8ubuntu3 [2441 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgomp1 amd64 6.1.1-2ubuntu12 [74.0 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libitm1 amd64 6.1.1-2ubuntu12 [27.9 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libatomic1 amd64 6.1.1-2ubuntu12 [9166 B] Get:59 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasan2 amd64 5.3.1-19ubuntu1 [269 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 liblsan0 amd64 6.1.1-2ubuntu12 [116 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libtsan0 amd64 6.1.1-2ubuntu12 [260 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libubsan0 amd64 6.1.1-2ubuntu12 [107 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcilkrts5 amd64 6.1.1-2ubuntu12 [41.0 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpx0 amd64 5.3.1-19ubuntu1 [9744 B] Get:65 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libquadmath0 amd64 6.1.1-2ubuntu12 [132 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++-5 amd64 5.3.1-19ubuntu1 [32.3 MB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5 amd64 5.3.1-19ubuntu1 [8559 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++-5-dev amd64 5.3.1-19ubuntu1 [1407 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc-5-dev amd64 5.3.1-19ubuntu1 [2238 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcc1-0 amd64 6.1.1-2ubuntu12 [31.1 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp-5 amd64 5.3.1-19ubuntu1 [30.1 MB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5-base amd64 5.3.1-19ubuntu1 [17.2 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main amd64 dmsetup amd64 2:1.02.122-1ubuntu1 [72.0 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg-dev all 1.18.4ubuntu2 [584 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdpkg-perl all 1.18.4ubuntu2 [195 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main amd64 make amd64 4.1-9 [154 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpng12-0 amd64 1.2.54-6ubuntu1 [116 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main amd64 linux-libc-dev amd64 4.4.0-22.39 [837 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main amd64 optipng amd64 0.7.6-1build1 [81.9 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main amd64 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 100 MB in 11s (8795 kB/s) (Reading database ... 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Preparing to unpack .../gcc-5-base_5.3.1-19ubuntu1_amd64.deb ... Unpacking gcc-5-base:amd64 (5.3.1-19ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../dmsetup_2%3a1.02.122-1ubuntu1_amd64.deb ... Unpacking dmsetup (2:1.02.122-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Preparing to unpack .../dpkg-dev_1.18.4ubuntu2_all.deb ... Unpacking dpkg-dev (1.18.4ubuntu2) over (1.18.4ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.4ubuntu2_all.deb ... Unpacking libdpkg-perl (1.18.4ubuntu2) over (1.18.4ubuntu1) ... Preparing to unpack .../archives/make_4.1-9_amd64.deb ... Unpacking make (4.1-9) over (4.1-6) ... Preparing to unpack .../libpng12-0_1.2.54-6ubuntu1_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.54-6ubuntu1) over (1.2.54-1ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.4.0-22.39_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.4.0-22.39) over (4.4.0-21.37) ... Preparing to unpack .../optipng_0.7.6-1build1_amd64.deb ... 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Setting up libasn1-8-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libheimbase1-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libhcrypto4-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libwind0-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu4) ... Setting up libpng16-16:amd64 (1.6.21-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up binutils (2.26-8ubuntu3) ... Setting up libgomp1:amd64 (6.1.1-2ubuntu12) ... Setting up libitm1:amd64 (6.1.1-2ubuntu12) ... Setting up libatomic1:amd64 (6.1.1-2ubuntu12) ... Setting up gcc-5-base:amd64 (5.3.1-19ubuntu1) ... Setting up libasan2:amd64 (5.3.1-19ubuntu1) ... Setting up liblsan0:amd64 (6.1.1-2ubuntu12) ... Setting up libtsan0:amd64 (6.1.1-2ubuntu12) ... Setting up libubsan0:amd64 (6.1.1-2ubuntu12) ... Setting up libcilkrts5:amd64 (6.1.1-2ubuntu12) ... Setting up libmpx0:amd64 (5.3.1-19ubuntu1) ... Setting up libquadmath0:amd64 (6.1.1-2ubuntu12) ... Setting up cpp-5 (5.3.1-19ubuntu1) ... Setting up libcc1-0:amd64 (6.1.1-2ubuntu12) ... Setting up libgcc-5-dev:amd64 (5.3.1-19ubuntu1) ... Setting up gcc-5 (5.3.1-19ubuntu1) ... Setting up libstdc++-5-dev:amd64 (5.3.1-19ubuntu1) ... Setting up g++-5 (5.3.1-19ubuntu1) ... Setting up dmsetup (2:1.02.122-1ubuntu1) ... Setting up libdpkg-perl (1.18.4ubuntu2) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.4ubuntu2) ... Setting up libpng12-0:amd64 (1.2.54-6ubuntu1) ... Setting up linux-libc-dev:amd64 (4.4.0-22.39) ... Setting up optipng (0.7.6-1build1) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-5ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9724924', 'amd64', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=yakkety-proposed', '--purge=never', '--nolog', '-A', 'roary_3.6.2+dfsg-1.dsc'] Initiating build PACKAGEBUILD-9724924 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-86-generic #130-Ubuntu SMP Mon Apr 18 18:27:15 UTC 2016 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-32.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ roary 3.6.2+dfsg-1 (amd64) 11 May 2016 11:33 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: roary Version: 3.6.2+dfsg-1 Source Version: 3.6.2+dfsg-1 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/roary-RBdekB/roary-3.6.2+dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/roary-RBdekB' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9724924/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── roary_3.6.2+dfsg-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-A9KWXE/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-A9KWXE/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-A9KWXE/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-A9KWXE/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-A9KWXE/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-A9KWXE/apt_archive ./ Packages [528 B] Fetched 2855 B in 0s (124 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-A9KWXE/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-A9KWXE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl, libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, perl Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-dist-zilla, libdist-zilla-plugin-podweaver-perl, bioperl, libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, mafft, fasttree, perl dpkg-deb: building package 'sbuild-build-depends-roary-dummy' in '/«BUILDDIR»/resolver-NDaVdG/apt_archive/sbuild-build-depends-roary-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-NDaVdG/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-NDaVdG/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-NDaVdG/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-NDaVdG/apt_archive ./ Sources [636 B] Get:5 copy:/«BUILDDIR»/resolver-NDaVdG/apt_archive ./ Packages [901 B] Fetched 3656 B in 0s (262 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-NDaVdG/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install roary build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bedtools bioperl bsdmainutils cd-hit debhelper dh-autoreconf dh-dist-zilla dh-strip-nondeterminism fasttree file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libalgorithm-c3-perl libalgorithm-diff-perl libaliased-perl libapp-cmd-perl libarchive-zip-perl libarray-utils-perl libasprintf0v5 libautobox-perl libb-hooks-endofscope-perl libbio-perl-perl libblas-common libblas3 libcairo2 libcapture-tiny-perl libcarp-clan-perl libclass-c3-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-singleton-perl libclone-perl libconfig-ini-perl libconfig-mvp-perl libconfig-mvp-reader-ini-perl libcpan-uploader-perl libcpanel-json-xs-perl libcroco3 libcurl3 libdata-optlist-perl libdata-section-perl libdata-stag-perl libdatetime-locale-perl libdatetime-perl libdatetime-timezone-perl libdatrie1 libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdist-zilla-perl libdist-zilla-plugin-podweaver-perl libencode-locale-perl libenv-path-perl libeval-closure-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-copy-recursive-perl libfile-find-rule-perl libfile-grep-perl libfile-homedir-perl libfile-listing-perl libfile-pushd-perl libfile-sharedir-install-perl libfile-sharedir-perl libfile-slurp-tiny-perl libfile-slurper-perl libfile-stripnondeterminism-perl libfile-which-perl libfindbin-libs-perl libfontconfig1 libfreetype6 libgetopt-long-descriptive-perl libgfortran3 libglib2.0-0 libgraph-perl libgraph-readwrite-perl libgraphite2-3 libharfbuzz0b libhash-merge-simple-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu57 libimport-into-perl libio-all-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libio-tiecombine-perl libjbig0 libjpeg-turbo8 libjpeg8 libjson-maybexs-perl libjson-perl liblapack3 liblist-moreutils-perl liblog-dispatch-array-perl liblog-dispatch-perl liblog-dispatchouli-perl liblog-log4perl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmixin-linewise-perl libmodule-implementation-perl libmodule-path-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoo-perl libmoose-autobox-perl libmoose-perl libmoosex-lazyrequire-perl libmoosex-oneargnew-perl libmoosex-role-parameterized-perl libmoosex-setonce-perl libmoosex-types-path-class-perl libmoosex-types-perl libmoosex-types-perl-perl libmro-compat-perl libnamespace-autoclean-perl libnamespace-clean-perl libnet-http-perl libnet-ssleay-perl libnumber-compare-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-yapp-perl libpath-class-perl libpath-tiny-perl libperl-prereqscanner-perl libperl-version-perl libperlio-utf8-strict-perl libpipeline1 libpixman-1-0 libpod-elemental-perl libpod-elemental-perlmunger-perl libpod-eventual-perl libpod-weaver-perl libppi-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librole-hasmessage-perl librole-identifiable-perl librole-tiny-perl libscalar-list-utils-perl libscope-guard-perl libsensors4 libsigsegv2 libsm6 libsoftware-license-perl libspiffy-perl libstrictures-perl libstring-errf-perl libstring-flogger-perl libstring-formatter-perl libstring-rewriteprefix-perl libstring-truncate-perl libsub-exporter-formethods-perl libsub-exporter-globexporter-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-uplevel-perl libsyntax-keyword-junction-perl libsyntax-perl libtask-weaken-perl libtcl8.6 libterm-encoding-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-warn-perl libtext-csv-perl libtext-diff-perl libtext-glob-perl libtext-template-perl libthai-data libthai0 libthrowable-perl libtie-ixhash-perl libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libunistring0 liburi-perl libvariable-magic-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml-writer-perl libxml2 libxrender1 libxss1 libxt6 libyaml-tiny-perl m4 mafft man-db mcl mime-support ncbi-blast+ ncbi-data netbase parallel po-debconf prank python python-minimal python2.7 python2.7-minimal r-base-core sysstat ucf unzip x11-common xdg-utils zip Suggested packages: autoconf-archive gnu-standards autoconf-doc filo wamerican | wordlist whois vacation dh-make pristine-tar gettext-doc groff libxml-sax-expatxs-perl libdata-dump-perl libdb-file-lock-perl libfile-mimeinfo-perl libfile-readbackwards-perl libfreezethaw-perl libmldbm-perl libdbd-csv-perl libxml-dom-perl libipc-shareable-perl libcrypt-ssleay-perl libscalar-number-perl lm-sensors libbareword-filehandles-perl libindirect-perl libmultidimensional-perl tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk libauthen-ntlm-perl less www-browser mcl-doc libmail-box-perl python-doc python-tk python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html isag gvfs-bin Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl devscripts libgetopt-mixed-perl curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl libxml-sax-writer-perl libxml-libxml-perl libclass-c3-xs-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl bash-completion libarchive-tar-wrapper-perl libterm-readline-gnu-perl libdevel-lexalias-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libjson-xs-perl libmail-sendmail-perl libmailtools-perl libmime-lite-perl libclass-xsaccessor-perl libdevel-partialdump-perl libmoosex-getopt-perl libunicode-utf8-perl libtext-csv-xs-perl libltdl-dev libhtml-form-perl libhttp-daemon-perl xml-core blast2 lynx ruby ifupdown r-recommended r-base-dev r-doc-html cron | cron-daemon libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bedtools bioperl bsdmainutils cd-hit debhelper dh-autoreconf dh-dist-zilla dh-strip-nondeterminism fasttree file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libalgorithm-c3-perl libalgorithm-diff-perl libaliased-perl libapp-cmd-perl libarchive-zip-perl libarray-utils-perl libasprintf0v5 libautobox-perl libb-hooks-endofscope-perl libbio-perl-perl libblas-common libblas3 libcairo2 libcapture-tiny-perl libcarp-clan-perl libclass-c3-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-load-perl libclass-load-xs-perl libclass-method-modifiers-perl libclass-singleton-perl libclone-perl libconfig-ini-perl libconfig-mvp-perl libconfig-mvp-reader-ini-perl libcpan-uploader-perl libcpanel-json-xs-perl libcroco3 libcurl3 libdata-optlist-perl libdata-section-perl libdata-stag-perl libdatetime-locale-perl libdatetime-perl libdatetime-timezone-perl libdatrie1 libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdist-zilla-perl libdist-zilla-plugin-podweaver-perl libencode-locale-perl libenv-path-perl libeval-closure-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-copy-recursive-perl libfile-find-rule-perl libfile-grep-perl libfile-homedir-perl libfile-listing-perl libfile-pushd-perl libfile-sharedir-install-perl libfile-sharedir-perl libfile-slurp-tiny-perl libfile-slurper-perl libfile-stripnondeterminism-perl libfile-which-perl libfindbin-libs-perl libfontconfig1 libfreetype6 libgetopt-long-descriptive-perl libgfortran3 libglib2.0-0 libgraph-perl libgraph-readwrite-perl libgraphite2-3 libharfbuzz0b libhash-merge-simple-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu57 libimport-into-perl libio-all-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libio-tiecombine-perl libjbig0 libjpeg-turbo8 libjpeg8 libjson-maybexs-perl libjson-perl liblapack3 liblist-moreutils-perl liblog-dispatch-array-perl liblog-dispatch-perl liblog-dispatchouli-perl liblog-log4perl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libmixin-linewise-perl libmodule-implementation-perl libmodule-path-perl libmodule-pluggable-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoo-perl libmoose-autobox-perl libmoose-perl libmoosex-lazyrequire-perl libmoosex-oneargnew-perl libmoosex-role-parameterized-perl libmoosex-setonce-perl libmoosex-types-path-class-perl libmoosex-types-perl libmoosex-types-perl-perl libmro-compat-perl libnamespace-autoclean-perl libnamespace-clean-perl libnet-http-perl libnet-ssleay-perl libnumber-compare-perl libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libparams-validate-perl libparse-yapp-perl libpath-class-perl libpath-tiny-perl libperl-prereqscanner-perl libperl-version-perl libperlio-utf8-strict-perl libpipeline1 libpixman-1-0 libpod-elemental-perl libpod-elemental-perlmunger-perl libpod-eventual-perl libpod-weaver-perl libppi-perl libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librole-hasmessage-perl librole-identifiable-perl librole-tiny-perl libscalar-list-utils-perl libscope-guard-perl libsensors4 libsigsegv2 libsm6 libsoftware-license-perl libspiffy-perl libstrictures-perl libstring-errf-perl libstring-flogger-perl libstring-formatter-perl libstring-rewriteprefix-perl libstring-truncate-perl libsub-exporter-formethods-perl libsub-exporter-globexporter-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-uplevel-perl libsyntax-keyword-junction-perl libsyntax-perl libtask-weaken-perl libtcl8.6 libterm-encoding-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-file-perl libtest-files-perl libtest-most-perl libtest-output-perl libtest-warn-perl libtext-csv-perl libtext-diff-perl libtext-glob-perl libtext-template-perl libthai-data libthai0 libthrowable-perl libtie-ixhash-perl libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libunistring0 liburi-perl libvariable-magic-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml-writer-perl libxml2 libxrender1 libxss1 libxt6 libyaml-tiny-perl m4 mafft man-db mcl mime-support ncbi-blast+ ncbi-data netbase parallel po-debconf prank python python-minimal python2.7 python2.7-minimal r-base-core sbuild-build-depends-roary-dummy sysstat ucf unzip x11-common xdg-utils zip 0 upgraded, 267 newly installed, 0 to remove and 0 not upgraded. Need to get 80.6 MB of archives. After this operation, 288 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-roary-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-NDaVdG/apt_archive ./ sbuild-build-depends-roary-dummy 0.invalid.0 [1140 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 groff-base amd64 1.22.3-7 [1151 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 ucf all 3.0036 [52.9 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 fontconfig-config all 2.11.94-0ubuntu1 [49.9 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 libexpat1 amd64 2.1.1-1 [70.9 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfreetype6 amd64 2.6.3-3ubuntu1 [320 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1 [131 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 fontconfig amd64 2.11.94-0ubuntu1 [178 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3 [111 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpython2.7-minimal amd64 2.7.11-9 [336 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 python2.7-minimal amd64 2.7.11-9 [1322 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 python-minimal amd64 2.7.11-1 [28.2 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] Get:31 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http://ftpmaster.internal/ubuntu yakkety/main amd64 libio-string-perl all 1.08-3 [11.1 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdata-stag-perl all 0.14-1ubuntu2 [366 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libbio-perl-perl all 1.6.924-3 [4721 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/universe amd64 bioperl all 1.6.924-3 [387 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/universe amd64 cd-hit amd64 4.6.5-1 [853 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext amd64 0.19.7-2ubuntu3 [1076 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main amd64 po-debconf all 1.0.19 [234 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main amd64 libarchive-zip-perl all 1.57-1 [84.0 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-stripnondeterminism-perl all 0.016-1 [11.0 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-strip-nondeterminism all 0.016-1 [4858 B] Get:64 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtool all 2.4.6-0.1 [193 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-autoreconf all 12 [15.8 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main amd64 debhelper all 9.20160403ubuntu1 [711 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libcapture-tiny-perl all 0.36-1 [20.1 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libparams-util-perl amd64 1.07-2build2 [19.5 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsub-install-perl all 0.928-1 [10.5 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdata-optlist-perl all 0.110-1 [9956 B] Get:71 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libparams-classify-perl amd64 0.013-5build1 [21.1 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmodule-runtime-perl all 0.014-2 [15.6 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtry-tiny-perl all 0.24-1 [19.8 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpackage-stash-perl all 0.37-1 [18.3 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libclass-load-perl all 0.23-1 [13.5 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main amd64 libio-stringy-perl all 2.110-5 [93.5 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libparams-validate-perl amd64 1.23-1 [51.7 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsub-exporter-perl all 0.986-1 [50.6 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libgetopt-long-descriptive-perl all 0.099-1 [25.4 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libio-tiecombine-perl all 1.005-1 [12.5 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmodule-pluggable-perl all 5.2-1 [21.9 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libstring-rewriteprefix-perl all 0.007-1 [6674 B] Get:84 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libapp-cmd-perl all 0.330-1 [67.4 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libscope-guard-perl all 0.21-1 [7866 B] Get:86 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libautobox-perl amd64 2.83-1build1 [25.7 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libperlio-utf8-strict-perl amd64 0.006-1build1 [10.6 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmixin-linewise-perl all 0.108-1 [14.3 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libconfig-ini-perl all 1:0.025-1 [23.3 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libclass-load-xs-perl amd64 0.09-1build1 [13.4 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsub-exporter-progressive-perl all 0.001011-1 [7064 B] Get:92 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdevel-globaldestruction-perl all 0.13-1 [7664 B] Get:93 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libalgorithm-c3-perl all 0.10-1 [11.3 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libclass-c3-perl all 0.31-1 [19.0 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmro-compat-perl all 0.12-1 [12.2 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsub-identify-perl amd64 0.12-1build1 [10.3 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdevel-overloadinfo-perl all 0.004-1 [6844 B] Get:98 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdevel-stacktrace-perl all 2.0100-1 [19.3 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libeval-closure-perl all 0.13-1 [10.9 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/main amd64 libexporter-tiny-perl all 0.042-1 [28.8 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblist-moreutils-perl amd64 0.413-1build1 [67.0 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdist-checkconflicts-perl all 0.11-1 [10.2 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmodule-runtime-conflicts-perl all 0.002-1 [6976 B] Get:104 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libvariable-magic-perl amd64 0.59-1build1 [34.1 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libb-hooks-endofscope-perl all 0.15-1 [16.2 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsub-name-perl amd64 0.15-1 [11.0 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libnamespace-clean-perl all 0.26-1 [14.0 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libnamespace-autoclean-perl all 0.28-1 [12.5 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpackage-deprecationmanager-perl all 0.16-1 [15.2 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpackage-stash-xs-perl amd64 0.28-2build2 [16.1 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtask-weaken-perl all 1.04-1 [7628 B] Get:112 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoose-perl amd64 2.1605-1 [747 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoosex-role-parameterized-perl all 1.08-1 [34.4 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoosex-oneargnew-perl all 0.003-1 [7118 B] Get:115 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjson-perl all 2.90-1 [79.4 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libstring-formatter-perl all 0.102084-1 [22.2 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libstring-errf-perl all 0.007-2 [11.4 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/universe amd64 librole-hasmessage-perl all 0.006-1 [9152 B] Get:119 http://ftpmaster.internal/ubuntu yakkety/universe amd64 librole-identifiable-perl all 0.006-1 [8298 B] Get:120 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libclass-method-modifiers-perl all 2.11-1 [15.7 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libimport-into-perl all 1.002005-1 [11.0 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety/universe amd64 librole-tiny-perl all 2.000003-1 [15.8 kB] Get:123 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libstrictures-perl all 2.000003-1 [16.1 kB] Get:124 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoo-perl all 2.001001-1 [54.9 kB] Get:125 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libthrowable-perl all 0.200013-1 [14.8 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtie-ixhash-perl all 1.23-2 [11.2 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libconfig-mvp-perl all 2.200010-1 [49.3 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libconfig-mvp-reader-ini-perl all 2.101463-1 [5838 B] Get:129 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-which-perl all 1.19-1 [12.3 kB] Get:130 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-homedir-perl all 1.00-1 [46.0 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety/main amd64 libnet-ssleay-perl amd64 1.74-1 [259 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety/main amd64 libio-socket-ssl-perl all 2.027-1 [160 kB] Get:133 http://ftpmaster.internal/ubuntu yakkety/main amd64 liburi-perl all 1.71-1 [76.9 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] Get:135 http://ftpmaster.internal/ubuntu yakkety/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] Get:136 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-listing-perl all 6.04-1 [9774 B] Get:138 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:139 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] Get:140 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] Get:141 http://ftpmaster.internal/ubuntu yakkety/main amd64 libio-html-perl all 1.001-1 [14.9 kB] Get:142 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:143 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] Get:144 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:145 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:146 http://ftpmaster.internal/ubuntu yakkety/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:147 http://ftpmaster.internal/ubuntu yakkety/main amd64 libwww-perl all 6.15-1 [146 kB] Get:148 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] Get:149 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libterm-readkey-perl amd64 2.33-1build1 [27.2 kB] Get:150 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libcpan-uploader-perl all 0.103012-1 [13.1 kB] Get:151 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdata-section-perl all 0.200006-1 [12.0 kB] Get:152 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdatetime-locale-perl all 1:1.02-1 [2195 kB] Get:153 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libclass-singleton-perl all 1.5-1 [13.0 kB] Get:154 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libscalar-list-utils-perl amd64 1:1.45-1 [47.5 kB] Get:155 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdatetime-timezone-perl all 1:1.98-1+2016d [251 kB] Get:156 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdatetime-perl amd64 2:1.21-1build1 [85.6 kB] Get:157 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-copy-recursive-perl all 0.38-1 [20.6 kB] Get:158 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libnumber-compare-perl all 0.03-1 [7318 B] Get:159 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtext-glob-perl all 0.09-2 [8016 B] Get:160 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] Get:161 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libfile-pushd-perl all 1.009-1 [11.9 kB] Get:162 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libfile-sharedir-install-perl all 0.10-1 [9898 B] Get:163 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libclass-inspector-perl all 1.28-1 [18.7 kB] Get:164 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libfile-sharedir-perl all 1.102-1 [11.6 kB] Get:165 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libhash-merge-simple-perl all 0.051-1 [7764 B] Get:166 http://ftpmaster.internal/ubuntu yakkety/universe amd64 liblog-dispatch-perl all 2.54-1 [58.8 kB] Get:167 http://ftpmaster.internal/ubuntu yakkety/universe amd64 liblog-dispatch-array-perl all 1.002-1 [5992 B] Get:168 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libcpanel-json-xs-perl amd64 3.0213-1 [89.3 kB] Get:169 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libjson-maybexs-perl all 1.003005-1 [9516 B] Get:170 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libstring-flogger-perl all 1.101245-1 [6686 B] Get:171 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsub-exporter-globexporter-perl all 0.005-1 [7438 B] Get:172 http://ftpmaster.internal/ubuntu yakkety/universe amd64 liblog-dispatchouli-perl all 2.012-1 [25.5 kB] Get:173 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsyntax-perl all 0.004-1 [6936 B] Get:174 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsyntax-keyword-junction-perl all 0.003008-1 [11.7 kB] Get:175 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoose-autobox-perl all 0.15-1 [44.5 kB] Get:176 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libaliased-perl all 0.34-1 [13.2 kB] Get:177 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoosex-lazyrequire-perl all 0.11-1 [7976 B] Get:178 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoosex-setonce-perl all 0.200002-1 [6716 B] Get:179 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libcarp-clan-perl all 6.04-2 [11.6 kB] Get:180 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsub-exporter-formethods-perl all 0.100052-1 [7346 B] Get:181 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoosex-types-perl all 0.46-1 [46.8 kB] Get:182 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpath-class-perl all 0.36-1 [37.4 kB] Get:183 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoosex-types-path-class-perl all 0.08-1 [8914 B] Get:184 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmoosex-types-perl-perl all 0.101343-1 [7908 B] Get:185 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpath-tiny-perl all 0.088-1 [54.4 kB] Get:186 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libmodule-path-perl all 0.19-1 [11.5 kB] Get:187 http://ftpmaster.internal/ubuntu yakkety/main amd64 libclone-perl amd64 0.38-1build1 [10.3 kB] Get:188 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libppi-perl all 1.220-1 [340 kB] Get:189 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libperl-prereqscanner-perl all 1.023-1 [32.3 kB] Get:190 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libfile-slurp-tiny-perl all 0.003-1 [6560 B] Get:191 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libperl-version-perl all 1.013-1 [27.9 kB] Get:192 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpod-eventual-perl all 0.094001-1 [13.1 kB] Get:193 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtext-template-perl all 1.46-1 [51.5 kB] Get:194 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsoftware-license-perl all 0.103012-1 [108 kB] Get:195 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libterm-encoding-perl all 0.02-1 [5418 B] Get:196 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtest-deep-perl all 1.120-2 [39.3 kB] Get:197 http://ftpmaster.internal/ubuntu yakkety/main amd64 libyaml-tiny-perl all 1.69-1 [25.8 kB] Get:198 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdist-zilla-perl all 5.047-2 [310 kB] Get:199 http://ftpmaster.internal/ubuntu yakkety/universe amd64 dh-dist-zilla all 1.3.2 [16.3 kB] Get:200 http://ftpmaster.internal/ubuntu yakkety/main amd64 libalgorithm-diff-perl all 1.19.03-1 [47.6 kB] Get:201 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libarray-utils-perl all 0.5-1 [5962 B] Get:202 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] Get:203 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] Get:204 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] Get:205 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] Get:206 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] Get:207 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcairo2 amd64 1.14.6-1build1 [555 kB] Get:208 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libclass-data-inheritable-perl all 0.08-2 [8774 B] Get:209 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcurl3 amd64 7.47.0-1ubuntu2 [185 kB] Get:210 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] Get:211 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libstring-truncate-perl all 1.100602-1 [9730 B] Get:212 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpod-elemental-perl all 0.103004-1 [76.1 kB] Get:213 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpod-elemental-perlmunger-perl all 0.200006-1 [9260 B] Get:214 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpod-weaver-perl all 4.013-1 [62.2 kB] Get:215 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libdist-zilla-plugin-podweaver-perl all 4.006-1 [7828 B] Get:216 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libenv-path-perl all 0.19-1 [20.9 kB] Get:217 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libexception-class-perl all 1.40-1 [23.5 kB] Get:218 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libfile-grep-perl all 0.02-1 [7458 B] Get:219 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libfile-slurper-perl all 0.008-1 [7576 B] Get:220 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libfindbin-libs-perl all 2.150-1 [23.0 kB] Get:221 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgfortran3 amd64 6.1.1-2ubuntu12 [270 kB] Get:222 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libgraph-perl all 1:0.96-2 [117 kB] Get:223 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libspiffy-perl all 0.41-1 [24.3 kB] Get:224 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libio-all-perl all 0.86-2 [67.1 kB] Get:225 http://ftpmaster.internal/ubuntu yakkety/main amd64 libparse-yapp-perl all 1.05-12 [51.1 kB] Get:226 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] Get:227 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libxml-writer-perl all 0.625-1 [24.9 kB] Get:228 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libgraph-readwrite-perl all 2.08-1 [49.3 kB] Get:229 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgraphite2-3 amd64 1.3.6-1ubuntu1 [70.8 kB] Get:230 http://ftpmaster.internal/ubuntu yakkety/main amd64 libharfbuzz0b amd64 1.2.6-2 [180 kB] Get:231 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:232 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] Get:233 http://ftpmaster.internal/ubuntu yakkety/universe amd64 liblog-log4perl-perl all 1.44-1ubuntu1 [403 kB] Get:234 http://ftpmaster.internal/ubuntu yakkety/main amd64 libthai-data all 0.1.24-2 [131 kB] Get:235 http://ftpmaster.internal/ubuntu yakkety/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] Get:236 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpango-1.0-0 amd64 1.40.1-1 [149 kB] Get:237 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpangoft2-1.0-0 amd64 1.40.1-1 [33.1 kB] Get:238 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpangocairo-1.0-0 amd64 1.40.1-1 [20.6 kB] Get:239 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] Get:240 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] Get:241 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsensors4 amd64 1:3.4.0-2build1 [28.4 kB] Get:242 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libsub-uplevel-perl all 0.2500-1 [13.9 kB] Get:243 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] Get:244 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtext-diff-perl all 1.44-1 [25.5 kB] Get:245 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtest-differences-perl all 0.64-1 [16.2 kB] Get:246 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtest-exception-perl all 0.43-1 [14.7 kB] Get:247 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtest-file-perl all 1.44-1 [16.6 kB] Get:248 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtest-files-perl all 0.14-1 [9138 B] Get:249 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtest-warn-perl all 0.30-1 [13.9 kB] Get:250 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtest-most-perl all 0.34-1 [23.4 kB] Get:251 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtest-output-perl all 1.03-1 [12.3 kB] Get:252 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libtext-csv-perl all 1.33-1 [48.2 kB] Get:253 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtiff5 amd64 4.0.6-1 [144 kB] Get:254 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] Get:255 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] Get:256 http://ftpmaster.internal/ubuntu yakkety/universe amd64 mafft amd64 7.271-1 [826 kB] Get:257 http://ftpmaster.internal/ubuntu yakkety/universe amd64 ncbi-data all 6.1.20120620-10build1 [3287 kB] Get:258 http://ftpmaster.internal/ubuntu yakkety/universe amd64 ncbi-blast+ amd64 2.2.31-4 [8973 kB] Get:259 http://ftpmaster.internal/ubuntu yakkety/universe amd64 prank amd64 0.0.150803-1 [349 kB] Get:260 http://ftpmaster.internal/ubuntu yakkety/main amd64 zip amd64 3.0-11 [158 kB] Get:261 http://ftpmaster.internal/ubuntu yakkety/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] Get:262 http://ftpmaster.internal/ubuntu yakkety/main amd64 xdg-utils all 1.1.1-1ubuntu1 [59.9 kB] Get:263 http://ftpmaster.internal/ubuntu yakkety/universe amd64 r-base-core amd64 3.3.0-1 [20.8 MB] Get:264 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysstat amd64 11.3.3-1 [256 kB] Get:265 http://ftpmaster.internal/ubuntu yakkety/universe amd64 fasttree amd64 2.1.9-1 [128 kB] Get:266 http://ftpmaster.internal/ubuntu yakkety/universe amd64 mcl amd64 1:14-137-1 [544 kB] Get:267 http://ftpmaster.internal/ubuntu yakkety/universe amd64 parallel all 20141022+ds1-1 [206 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.6 MB in 8s (9210 kB/s) Selecting previously unselected package libxau6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... 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Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-5ubuntu1) ... Setting up libpython2.7-minimal:amd64 (2.7.11-9) ... Setting up python2.7-minimal (2.7.11-9) ... Setting up python-minimal (2.7.11-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13976 files and directories currently installed.) Preparing to unpack .../python_2.7.11-1_amd64.deb ... Unpacking python (2.7.11-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package netbase. Preparing to unpack .../archives/netbase_5.3_all.deb ... Unpacking netbase (5.3) ... Selecting previously unselected package libasprintf0v5:amd64. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_amd64.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... 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Selecting previously unselected package libmoose-autobox-perl. Preparing to unpack .../libmoose-autobox-perl_0.15-1_all.deb ... Unpacking libmoose-autobox-perl (0.15-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../libaliased-perl_0.34-1_all.deb ... Unpacking libaliased-perl (0.34-1) ... Selecting previously unselected package libmoosex-lazyrequire-perl. Preparing to unpack .../libmoosex-lazyrequire-perl_0.11-1_all.deb ... Unpacking libmoosex-lazyrequire-perl (0.11-1) ... Selecting previously unselected package libmoosex-setonce-perl. Preparing to unpack .../libmoosex-setonce-perl_0.200002-1_all.deb ... Unpacking libmoosex-setonce-perl (0.200002-1) ... Selecting previously unselected package libcarp-clan-perl. Preparing to unpack .../libcarp-clan-perl_6.04-2_all.deb ... Unpacking libcarp-clan-perl (6.04-2) ... Selecting previously unselected package libsub-exporter-formethods-perl. 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Preparing to unpack .../parallel_20141022+ds1-1_all.deb ... Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Unpacking parallel (20141022+ds1-1) ... Selecting previously unselected package sbuild-build-depends-roary-dummy. Preparing to unpack .../sbuild-build-depends-roary-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-roary-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-5ubuntu1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... Setting up libx11-data (2:1.6.3-1ubuntu2) ... Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0036) ... Setting up fontconfig-config (2.11.94-0ubuntu1) ... Setting up libexpat1:amd64 (2.1.1-1) ... Setting up libfreetype6:amd64 (2.6.3-3ubuntu1) ... Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1) ... Setting up fontconfig (2.11.94-0ubuntu1) ... Regenerating fonts cache... done. Setting up x11-common (1:7.7+13ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1) ... 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Setting up libpackage-deprecationmanager-perl (0.16-1) ... Setting up libpackage-stash-xs-perl (0.28-2build2) ... Setting up libtask-weaken-perl (1.04-1) ... Setting up libmoose-perl (2.1605-1) ... Setting up libmoosex-role-parameterized-perl (1.08-1) ... Setting up libmoosex-oneargnew-perl (0.003-1) ... Setting up libjson-perl (2.90-1) ... Setting up libstring-formatter-perl (0.102084-1) ... Setting up libstring-errf-perl (0.007-2) ... Setting up librole-hasmessage-perl (0.006-1) ... Setting up librole-identifiable-perl (0.006-1) ... Setting up libclass-method-modifiers-perl (2.11-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up librole-tiny-perl (2.000003-1) ... Setting up libstrictures-perl (2.000003-1) ... Setting up libmoo-perl (2.001001-1) ... Setting up libthrowable-perl (0.200013-1) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libconfig-mvp-perl (2.200010-1) ... Setting up libconfig-mvp-reader-ini-perl (2.101463-1) ... Setting up libfile-which-perl (1.19-1) ... Setting up libfile-homedir-perl (1.00-1) ... Setting up libnet-ssleay-perl (1.74-1) ... Setting up libio-socket-ssl-perl (2.027-1) ... Setting up liburi-perl (1.71-1) ... Setting up libnet-http-perl (6.09-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.72-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libterm-readkey-perl (2.33-1build1) ... Setting up libdata-section-perl (0.200006-1) ... Setting up libdatetime-locale-perl (1:1.02-1) ... Setting up libclass-singleton-perl (1.5-1) ... Setting up libscalar-list-utils-perl (1:1.45-1) ... Setting up libdatetime-timezone-perl (1:1.98-1+2016d) ... Setting up libdatetime-perl (2:1.21-1build1) ... Setting up libfile-copy-recursive-perl (0.38-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libtext-glob-perl (0.09-2) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libfile-pushd-perl (1.009-1) ... Setting up libfile-sharedir-install-perl (0.10-1) ... Setting up libclass-inspector-perl (1.28-1) ... Setting up libfile-sharedir-perl (1.102-1) ... Setting up libhash-merge-simple-perl (0.051-1) ... Setting up liblog-dispatch-perl (2.54-1) ... Setting up liblog-dispatch-array-perl (1.002-1) ... Setting up libcpanel-json-xs-perl (3.0213-1) ... Setting up libjson-maybexs-perl (1.003005-1) ... Setting up libstring-flogger-perl (1.101245-1) ... Setting up libsub-exporter-globexporter-perl (0.005-1) ... Setting up liblog-dispatchouli-perl (2.012-1) ... Setting up libsyntax-perl (0.004-1) ... Setting up libsyntax-keyword-junction-perl (0.003008-1) ... Setting up libmoose-autobox-perl (0.15-1) ... Setting up libaliased-perl (0.34-1) ... Setting up libmoosex-lazyrequire-perl (0.11-1) ... Setting up libmoosex-setonce-perl (0.200002-1) ... Setting up libcarp-clan-perl (6.04-2) ... Setting up libsub-exporter-formethods-perl (0.100052-1) ... Setting up libmoosex-types-perl (0.46-1) ... Setting up libpath-class-perl (0.36-1) ... Setting up libmoosex-types-path-class-perl (0.08-1) ... Setting up libmoosex-types-perl-perl (0.101343-1) ... Setting up libpath-tiny-perl (0.088-1) ... Setting up libmodule-path-perl (0.19-1) ... Setting up libclone-perl (0.38-1build1) ... Setting up libppi-perl (1.220-1) ... Setting up libperl-prereqscanner-perl (1.023-1) ... Setting up libfile-slurp-tiny-perl (0.003-1) ... Setting up libperl-version-perl (1.013-1) ... Setting up libpod-eventual-perl (0.094001-1) ... Setting up libtext-template-perl (1.46-1) ... Setting up libsoftware-license-perl (0.103012-1) ... Setting up libterm-encoding-perl (0.02-1) ... Setting up libtest-deep-perl (1.120-2) ... Setting up libyaml-tiny-perl (1.69-1) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up libarray-utils-perl (0.5-1) ... Setting up libblas-common (3.6.0-2ubuntu2) ... Setting up libblas3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... Setting up libcairo2:amd64 (1.14.6-1build1) ... Setting up libclass-data-inheritable-perl (0.08-2) ... Setting up libcurl3:amd64 (7.47.0-1ubuntu2) ... Setting up libdatrie1:amd64 (0.2.10-2) ... Setting up libstring-truncate-perl (1.100602-1) ... Setting up libpod-elemental-perl (0.103004-1) ... Setting up libpod-elemental-perlmunger-perl (0.200006-1) ... Setting up libpod-weaver-perl (4.013-1) ... Setting up libenv-path-perl (0.19-1) ... Setting up libexception-class-perl (1.40-1) ... Setting up libfile-grep-perl (0.02-1) ... Setting up libfile-slurper-perl (0.008-1) ... Setting up libfindbin-libs-perl (2.150-1) ... Setting up libgfortran3:amd64 (6.1.1-2ubuntu12) ... Setting up libgraph-perl (1:0.96-2) ... Setting up libspiffy-perl (0.41-1) ... Setting up libio-all-perl (0.86-2) ... Setting up libparse-yapp-perl (1.05-12) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libgraphite2-3:amd64 (1.3.6-1ubuntu1) ... Setting up libharfbuzz0b:amd64 (1.2.6-2) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up liblapack3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblog-log4perl-perl (1.44-1ubuntu1) ... Setting up libthai-data (0.1.24-2) ... Setting up libthai0:amd64 (0.1.24-2) ... Setting up libpango-1.0-0:amd64 (1.40.1-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ... Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up libsensors4:amd64 (1:3.4.0-2build1) ... Setting up libsub-uplevel-perl (0.2500-1) ... Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... Setting up libtext-diff-perl (1.44-1) ... Setting up libtest-differences-perl (0.64-1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtest-file-perl (1.44-1) ... Setting up libtest-files-perl (0.14-1) ... Setting up libtest-warn-perl (0.30-1) ... Setting up libtest-most-perl (0.34-1) ... Setting up libtest-output-perl (1.03-1) ... Setting up libtext-csv-perl (1.33-1) ... Setting up libtiff5:amd64 (4.0.6-1) ... Setting up libtk8.6:amd64 (8.6.5-1) ... Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... Setting up mafft (7.271-1) ... Setting up ncbi-data (6.1.20120620-10build1) ... Setting up ncbi-blast+ (2.2.31-4) ... Setting up prank (0.0.150803-1) ... Setting up zip (3.0-11) ... Setting up unzip (6.0-20ubuntu1) ... Setting up xdg-utils (1.1.1-1ubuntu1) ... Setting up r-base-core (3.3.0-1) ... Creating config file /etc/R/Renviron with new version Setting up sysstat (11.3.3-1) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Setting up fasttree (2.1.9-1) ... Setting up mcl (1:14-137-1) ... Setting up parallel (20141022+ds1-1) ... Setting up dh-autoreconf (12) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up libwww-perl (6.15-1) ... Setting up libcpan-uploader-perl (0.103012-1) ... Setting up libdist-zilla-perl (5.047-2) ... Setting up dh-dist-zilla (1.3.2) ... Setting up libdist-zilla-plugin-podweaver-perl (4.006-1) ... Setting up libxml-parser-perl (2.44-1build1) ... Setting up libgraph-readwrite-perl (2.08-1) ... Setting up sbuild-build-depends-roary-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.016-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-5ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-86-generic amd64 (x86_64) Toolchain package versions: binutils_2.26-8ubuntu3 dpkg-dev_1.18.4ubuntu2 g++-5_5.3.1-19ubuntu1 gcc-5_5.3.1-19ubuntu1 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-19ubuntu1 libstdc++6_6.1.1-2ubuntu12 linux-libc-dev_4.4.0-22.39 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.11 apt-transport-https_1.2.11 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 bedtools_2.25.0-1 binutils_2.26-8ubuntu3 bioperl_1.6.924-3 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 cd-hit_4.6.5-1 coreutils_8.25-2ubuntu2 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libselinux1_2.5-2 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsensors4_1:3.4.0-2build1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.27.1-6ubuntu3 libsoftware-license-perl_0.103012-1 libspiffy-perl_0.41-1 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-19ubuntu1 libstdc++6_6.1.1-2ubuntu12 libstrictures-perl_2.000003-1 libstring-errf-perl_0.007-2 libstring-flogger-perl_1.101245-1 libstring-formatter-perl_0.102084-1 libstring-rewriteprefix-perl_0.007-1 libstring-truncate-perl_1.100602-1 libsub-exporter-formethods-perl_0.100052-1 libsub-exporter-globexporter-perl_0.005-1 libsub-exporter-perl_0.986-1 libsub-exporter-progressive-perl_0.001011-1 libsub-identify-perl_0.12-1build1 libsub-install-perl_0.928-1 libsub-name-perl_0.15-1 libsub-uplevel-perl_0.2500-1 libsyntax-keyword-junction-perl_0.003008-1 libsyntax-perl_0.004-1 libsystemd0_229-5ubuntu1 libtask-weaken-perl_1.04-1 libtasn1-6_4.8-1 libtcl8.6_8.6.5+dfsg-2 libterm-encoding-perl_0.02-1 libterm-readkey-perl_2.33-1build1 libtest-deep-perl_1.120-2 libtest-differences-perl_0.64-1 libtest-exception-perl_0.43-1 libtest-file-perl_1.44-1 libtest-files-perl_0.14-1 libtest-most-perl_0.34-1 libtest-output-perl_1.03-1 libtest-warn-perl_0.30-1 libtext-csv-perl_1.33-1 libtext-diff-perl_1.44-1 libtext-glob-perl_0.09-2 libtext-template-perl_1.46-1 libthai-data_0.1.24-2 libthai0_0.1.24-2 libthrowable-perl_0.200013-1 libtie-ixhash-perl_1.23-2 libtiff5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libtk8.6_8.6.5-1 libtool_2.4.6-0.1 libtry-tiny-perl_0.24-1 libtsan0_6.1.1-2ubuntu12 libubsan0_6.1.1-2ubuntu12 libudev1_229-5ubuntu1 libunistring0_0.9.3-5.2ubuntu1 liburi-perl_1.71-1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libvariable-magic-perl_0.59-1build1 libwind0-heimdal_1.7~git20160418+dfsg-3 libwww-perl_6.15-1 libwww-robotrules-perl_6.01-1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libxau6_1:1.0.8-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml-parser-perl_2.44-1build1 libxml-writer-perl_0.625-1 libxml2_2.9.3+dfsg1-1build1 libxrender1_1:0.9.9-0ubuntu1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-0ubuntu1 libyaml-tiny-perl_1.69-1 linux-libc-dev_4.4.0-22.39 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 m4_1.4.17-5 mafft_7.271-1 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mcl_1:14-137-1 mime-support_3.59ubuntu1 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncbi-blast+_2.2.31-4 ncbi-data_6.1.20120620-10build1 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 netbase_5.3 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 parallel_20141022+ds1-1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 prank_0.0.150803-1 procps_2:3.3.10-4ubuntu2 python_2.7.11-1 python-minimal_2.7.11-1 python2.7_2.7.11-9 python2.7-minimal_2.7.11-9 r-base-core_3.3.0-1 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-roary-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 sysstat_11.3.3-1 systemd_229-5ubuntu1 systemd-sysv_229-5ubuntu1 sysv-rc_2.88dsf-59.3ubuntu5 sysvinit-utils_2.88dsf-59.3ubuntu5 tar_1.28-2.2 tzdata_2016d-2 ubuntu-keyring_2012.05.19 ucf_3.0036 unzip_6.0-20ubuntu1 util-linux_2.27.1-6ubuntu3 x11-common_1:7.7+13ubuntu3 xdg-utils_1.1.1-1ubuntu1 xz-utils_5.1.1alpha+20120614-2ubuntu2 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Tue May 10 21:42:29 2016 UTC using RSA key ID F09F4872 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./roary_3.6.2+dfsg-1.dsc dpkg-source: info: extracting roary in roary-3.6.2+dfsg dpkg-source: info: unpacking roary_3.6.2+dfsg.orig.tar.gz dpkg-source: info: unpacking roary_3.6.2+dfsg-1.debian.tar.xz dpkg-source: info: applying rename_R_script.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/roary-3.6.2+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/roary-3.6.2+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package roary dpkg-buildpackage: source version 3.6.2+dfsg-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build roary-3.6.2+dfsg dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with dist-zilla dh_testdir dh_dzil_clean dh_auto_clean dh_clean debian/rules build dh build --with dist-zilla dh_testdir dh_update_autotools_config debian/rules override_dh_dzil_build make[1]: Entering directory '/«BUILDDIR»/roary-3.6.2+dfsg' mv bin/create_pan_genome_plots.R bin/create_pan_genome_plots dh_dzil_build -- [DZ] beginning to build Bio-Roary [DZ] writing Bio-Roary in .build/debian-build [DZ] built in .build/debian-build make[1]: Leaving directory '/«BUILDDIR»/roary-3.6.2+dfsg' dh_auto_configure -D .build/debian-build perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Roary Writing MYMETA.yml and MYMETA.json dh_auto_build -D .build/debian-build make -j1 make[1]: Entering directory '/«BUILDDIR»/roary-3.6.2+dfsg/.build/debian-build' cp lib/Bio/Roary/External/Fasttree.pm blib/lib/Bio/Roary/External/Fasttree.pm cp lib/Bio/Roary.pm blib/lib/Bio/Roary.pm cp lib/Bio/Roary/CommandLine/Roary.pm blib/lib/Bio/Roary/CommandLine/Roary.pm cp lib/Bio/Roary/AssemblyStatistics.pm blib/lib/Bio/Roary/AssemblyStatistics.pm cp lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm blib/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm cp lib/Bio/Roary/CommandLine/Common.pm blib/lib/Bio/Roary/CommandLine/Common.pm cp lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm blib/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm cp lib/Bio/Roary/External/Cdhit.pm blib/lib/Bio/Roary/External/Cdhit.pm cp lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm blib/lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm cp lib/Bio/Roary/CommandLine/AssemblyStatistics.pm blib/lib/Bio/Roary/CommandLine/AssemblyStatistics.pm cp lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm blib/lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm cp lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm blib/lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm cp lib/Bio/Roary/CommandLine/CreatePanGenome.pm blib/lib/Bio/Roary/CommandLine/CreatePanGenome.pm cp lib/Bio/Roary/CombinedProteome.pm blib/lib/Bio/Roary/CombinedProteome.pm cp lib/Bio/Roary/External/CheckTools.pm blib/lib/Bio/Roary/External/CheckTools.pm cp lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm blib/lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm cp lib/Bio/Roary/BedFromGFFRole.pm blib/lib/Bio/Roary/BedFromGFFRole.pm cp lib/Bio/Roary/CommandLine/IterativeCdhit.pm blib/lib/Bio/Roary/CommandLine/IterativeCdhit.pm cp lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm cp lib/Bio/Roary/External/Blastp.pm blib/lib/Bio/Roary/External/Blastp.pm cp lib/Bio/Roary/AnnotateGroups.pm blib/lib/Bio/Roary/AnnotateGroups.pm cp lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm blib/lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm cp lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm blib/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm cp lib/Bio/Roary/AccessoryBinaryFasta.pm blib/lib/Bio/Roary/AccessoryBinaryFasta.pm cp lib/Bio/Roary/ClustersRole.pm blib/lib/Bio/Roary/ClustersRole.pm cp lib/Bio/Roary/AccessoryClustering.pm blib/lib/Bio/Roary/AccessoryClustering.pm cp lib/Bio/Roary/ChunkFastaFile.pm blib/lib/Bio/Roary/ChunkFastaFile.pm cp lib/Bio/Roary/AnalyseGroups.pm blib/lib/Bio/Roary/AnalyseGroups.pm cp lib/Bio/Roary/CommandLine/QueryRoary.pm blib/lib/Bio/Roary/CommandLine/QueryRoary.pm cp lib/Bio/Roary/Exceptions.pm blib/lib/Bio/Roary/Exceptions.pm cp lib/Bio/Roary/External/Mafft.pm blib/lib/Bio/Roary/External/Mafft.pm cp lib/Bio/Roary/JobRunner/Role.pm blib/lib/Bio/Roary/JobRunner/Role.pm cp lib/Bio/Roary/External/Makeblastdb.pm blib/lib/Bio/Roary/External/Makeblastdb.pm cp lib/Bio/Roary/Output/GroupsMultifastas.pm blib/lib/Bio/Roary/Output/GroupsMultifastas.pm cp lib/Bio/Roary/FilterFullClusters.pm blib/lib/Bio/Roary/FilterFullClusters.pm cp lib/Bio/Roary/InflateClusters.pm blib/lib/Bio/Roary/InflateClusters.pm cp lib/Bio/Roary/Output/EmblGroups.pm blib/lib/Bio/Roary/Output/EmblGroups.pm cp lib/Bio/Roary/ExtractProteomeFromGFFs.pm blib/lib/Bio/Roary/ExtractProteomeFromGFFs.pm cp lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm blib/lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm cp lib/Bio/Roary/External/Mcl.pm blib/lib/Bio/Roary/External/Mcl.pm cp lib/Bio/Roary/GeneNamesFromGFF.pm blib/lib/Bio/Roary/GeneNamesFromGFF.pm cp lib/Bio/Roary/OrderGenes.pm blib/lib/Bio/Roary/OrderGenes.pm cp lib/Bio/Roary/External/Prank.pm blib/lib/Bio/Roary/External/Prank.pm cp lib/Bio/Roary/Output/EMBLHeaderCommon.pm blib/lib/Bio/Roary/Output/EMBLHeaderCommon.pm cp lib/Bio/Roary/External/IterativeCdhit.pm blib/lib/Bio/Roary/External/IterativeCdhit.pm cp lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm blib/lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm cp lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm cp lib/Bio/Roary/GroupStatistics.pm blib/lib/Bio/Roary/GroupStatistics.pm cp lib/Bio/Roary/Output/BlastIdentityFrequency.pm blib/lib/Bio/Roary/Output/BlastIdentityFrequency.pm cp lib/Bio/Roary/MergeMultifastaAlignments.pm blib/lib/Bio/Roary/MergeMultifastaAlignments.pm cp lib/Bio/Roary/GroupLabels.pm blib/lib/Bio/Roary/GroupLabels.pm cp lib/Bio/Roary/ExtractProteomeFromGFF.pm blib/lib/Bio/Roary/ExtractProteomeFromGFF.pm cp lib/Bio/Roary/External/PostAnalysis.pm blib/lib/Bio/Roary/External/PostAnalysis.pm cp lib/Bio/Roary/Output/GroupsMultifastaProtein.pm blib/lib/Bio/Roary/Output/GroupsMultifastaProtein.pm cp lib/Bio/Roary/Output/GroupMultifasta.pm blib/lib/Bio/Roary/Output/GroupMultifasta.pm cp lib/Bio/Roary/JobRunner/Parallel.pm blib/lib/Bio/Roary/JobRunner/Parallel.pm cp lib/Bio/Roary/LookupGeneFiles.pm blib/lib/Bio/Roary/LookupGeneFiles.pm cp lib/Bio/Roary/JobRunner/Local.pm blib/lib/Bio/Roary/JobRunner/Local.pm cp lib/Bio/Roary/FilterUnknownsFromFasta.pm blib/lib/Bio/Roary/FilterUnknownsFromFasta.pm cp lib/Bio/Roary/IterativeCdhit.pm blib/lib/Bio/Roary/IterativeCdhit.pm cp lib/Bio/Roary/Output/DifferenceBetweenSets.pm blib/lib/Bio/Roary/Output/DifferenceBetweenSets.pm cp lib/Bio/Roary/ParallelAllAgainstAllBlast.pm blib/lib/Bio/Roary/ParallelAllAgainstAllBlast.pm cp lib/Bio/Roary/SplitGroups.pm blib/lib/Bio/Roary/SplitGroups.pm cp lib/Bio/Roary/SpreadsheetRole.pm blib/lib/Bio/Roary/SpreadsheetRole.pm cp lib/Bio/Roary/SortFasta.pm blib/lib/Bio/Roary/SortFasta.pm cp lib/Bio/Roary/PresenceAbsenceMatrix.pm blib/lib/Bio/Roary/PresenceAbsenceMatrix.pm cp lib/Bio/Roary/Output/NumberOfGroups.pm blib/lib/Bio/Roary/Output/NumberOfGroups.pm cp lib/Bio/Roary/SequenceLengths.pm blib/lib/Bio/Roary/SequenceLengths.pm cp lib/Bio/Roary/ReorderSpreadsheet.pm blib/lib/Bio/Roary/ReorderSpreadsheet.pm cp lib/Bio/Roary/QC/Report.pm blib/lib/Bio/Roary/QC/Report.pm cp lib/Bio/Roary/ParseGFFAnnotationRole.pm blib/lib/Bio/Roary/ParseGFFAnnotationRole.pm cp lib/Bio/Roary/Output/QueryGroups.pm blib/lib/Bio/Roary/Output/QueryGroups.pm cp lib/Bio/Roary/ReformatInputGFFs.pm blib/lib/Bio/Roary/ReformatInputGFFs.pm cp lib/Bio/Roary/PostAnalysis.pm blib/lib/Bio/Roary/PostAnalysis.pm cp lib/Bio/Roary/PrepareInputFiles.pm blib/lib/Bio/Roary/PrepareInputFiles.pm cp lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm blib/lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm cp lib/Bio/Roary/SampleOrder.pm blib/lib/Bio/Roary/SampleOrder.pm cp bin/protein_alignment_from_nucleotides blib/script/protein_alignment_from_nucleotides "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/protein_alignment_from_nucleotides cp bin/parallel_all_against_all_blastp blib/script/parallel_all_against_all_blastp "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/parallel_all_against_all_blastp cp bin/pan_genome_post_analysis blib/script/pan_genome_post_analysis "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_post_analysis cp bin/roary-create_pan_genome_plots.R blib/script/roary-create_pan_genome_plots.R "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-create_pan_genome_plots.R cp bin/roary blib/script/roary "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary cp bin/pan_genome_assembly_statistics blib/script/pan_genome_assembly_statistics "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_assembly_statistics cp bin/create_pan_genome_plots blib/script/create_pan_genome_plots "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome_plots cp bin/transfer_annotation_to_groups blib/script/transfer_annotation_to_groups "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/transfer_annotation_to_groups cp bin/roary-pan_genome_reorder_spreadsheet blib/script/roary-pan_genome_reorder_spreadsheet "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-pan_genome_reorder_spreadsheet cp bin/iterative_cdhit blib/script/iterative_cdhit "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/iterative_cdhit cp bin/pan_genome_core_alignment blib/script/pan_genome_core_alignment "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_core_alignment cp bin/create_pan_genome blib/script/create_pan_genome "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/create_pan_genome cp bin/pan_genome_reorder_spreadsheet blib/script/pan_genome_reorder_spreadsheet "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/pan_genome_reorder_spreadsheet cp bin/extract_proteome_from_gff blib/script/extract_proteome_from_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/extract_proteome_from_gff cp bin/roary-query_pan_genome blib/script/roary-query_pan_genome "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/roary-query_pan_genome cp bin/query_pan_genome blib/script/query_pan_genome "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/query_pan_genome Manifying 16 pod documents Manifying 26 pod documents Manifying 27 pod documents Manifying 24 pod documents make[1]: Leaving directory '/«BUILDDIR»/roary-3.6.2+dfsg/.build/debian-build' debian/rules override_dh_auto_test make[1]: Entering directory '/«BUILDDIR»/roary-3.6.2+dfsg' # pass make[1]: Leaving directory '/«BUILDDIR»/roary-3.6.2+dfsg' fakeroot debian/rules binary dh binary --with dist-zilla dh_testroot dh_prep dh_auto_install -D .build/debian-build make -j1 install DESTDIR=/«BUILDDIR»/roary-3.6.2\+dfsg/debian/roary AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/«BUILDDIR»/roary-3.6.2+dfsg/.build/debian-build' Manifying 16 pod documents Manifying 26 pod documents Manifying 27 pod documents Manifying 24 pod documents Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/OrderGenes.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SampleOrder.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SpreadsheetRole.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterFullClusters.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/InflateClusters.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/IterativeCdhit.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PostAnalysis.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Exceptions.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParallelAllAgainstAllBlast.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AccessoryClustering.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ClustersRole.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnalyseGroups.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/LookupGeneFiles.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SplitGroups.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SequenceLengths.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReformatInputGFFs.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/SortFasta.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PrepareInputFiles.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/MergeMultifastaAlignments.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ReorderSpreadsheet.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupLabels.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/PresenceAbsenceMatrix.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/GroupStatistics.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/AnnotateGroups.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CombinedProteome.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ParseGFFAnnotationRole.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mcl.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Makeblastdb.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Blastp.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Fasttree.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Prank.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Mafft.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/CheckTools.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/External/Cdhit.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/QC/Report.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaProtein.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastaNucleotide.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastasNucleotide.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/DifferenceBetweenSets.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EMBLHeaderCommon.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupMultifasta.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/QueryGroups.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/EmblGroups.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/NumberOfGroups.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/BlastIdentityFrequency.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/Output/GroupsMultifastas.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/Common.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Role.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/perl5/Bio/Roary/JobRunner/Local.pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/iterative_cdhit.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/parallel_all_against_all_blastp.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/create_pan_genome_plots.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/create_pan_genome.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/pan_genome_core_alignment.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/pan_genome_assembly_statistics.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/roary-create_pan_genome_plots.R.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/roary.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/extract_proteome_from_gff.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/roary-query_pan_genome.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/transfer_annotation_to_groups.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/protein_alignment_from_nucleotides.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/query_pan_genome.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man1/pan_genome_post_analysis.1p Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::OrderGenes.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SortFasta.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupLabels.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GroupStatistics.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Exceptions.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ClustersRole.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mcl.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SampleOrder.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::External::Mafft.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::SplitGroups.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::InflateClusters.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::QC::Report.3pm Installing /«BUILDDIR»/roary-3.6.2+dfsg/debian/roary/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm Installing 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pkgstriptranslations version 129 pkgstriptranslations: processing roary (in debian/roary); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/roary/DEBIAN/control, package roary, directory debian/roary pkgstripfiles: Truncating usr/share/doc/roary/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package roary ... pkgstripfiles: No PNG files. dpkg-deb: building package 'roary' in '../roary_3.6.2+dfsg-1_all.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../roary_3.6.2+dfsg-1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build roary-3.6.2+dfsg dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160511-1136 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ roary_3.6.2+dfsg-1_amd64.changes: ───────────────────────────────── Format: 1.8 Date: Tue, 10 May 2016 21:30:25 +0000 Source: roary Binary: roary Architecture: all Version: 3.6.2+dfsg-1 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: roary - high speed stand alone pan genome pipeline Changes: roary (3.6.2+dfsg-1) unstable; urgency=medium . * New upstream release. * Drop patches applied by upstream. Checksums-Sha1: 55d801a4ab1fba6988c17569a869b588e856af4f 165392 roary_3.6.2+dfsg-1_all.deb Checksums-Sha256: 8893078b400d41d777324534f9cf816ab3085030b65f3539822bc0fe43328cc2 165392 roary_3.6.2+dfsg-1_all.deb Files: 5c1d8a8ac6f8b2b8005bb5fffff442a2 165392 science extra roary_3.6.2+dfsg-1_all.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ roary_3.6.2+dfsg-1_all.deb ────────────────────────── new debian package, version 2.0. size 165392 bytes: control archive=6476 bytes. 1524 bytes, 20 lines control 16366 bytes, 189 lines md5sums Package: roary Version: 3.6.2+dfsg-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 634 Depends: perl, bioperl, libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree Section: science Priority: extra Homepage: http://sanger-pathogens.github.io/Roary/ Description: high speed stand alone pan genome pipeline Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. 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./usr/share/perl5/Bio/Roary/SplitGroups.pm -rw-r--r-- root/root 2327 2016-05-11 11:35 ./usr/share/perl5/Bio/Roary/SpreadsheetRole.pm ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 9384 Build-Time: 47 Distribution: yakkety-proposed Host Architecture: amd64 Install-Time: 94 Job: roary_3.6.2+dfsg-1.dsc Machine Architecture: amd64 Package: roary Package-Time: 143 Source-Version: 3.6.2+dfsg-1 Space: 9384 Status: successful Version: 3.6.2+dfsg-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160511-1136 Build needed 00:02:23, 9384k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9724924'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9724924/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9724924'] Unmounting chroot for build PACKAGEBUILD-9724924... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9724924'] Removing build PACKAGEBUILD-9724924