rsem 1.2.31+dfsg-1 source package in Ubuntu

Changelog

rsem (1.2.31+dfsg-1) unstable; urgency=medium

  * New upstream release

 -- Michael R. Crusoe <email address hidden>  Sat, 04 Jun 2016 04:40:56 -0700

Upload details

Uploaded by:
Debian Med on 2016-06-05
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release on 2017-10-24 universe misc
Artful release on 2017-04-20 universe misc
Zesty release on 2016-10-18 universe misc
Yakkety release on 2016-10-01 universe misc

Downloads

File Size SHA-256 Checksum
rsem_1.2.31+dfsg-1.dsc 2.0 KiB 069c2cb09e57afaba72326bd542071492e48c2a2f932761f333512f6b6fd1f54
rsem_1.2.31+dfsg.orig.tar.gz 4.7 MiB f71e22c57ce82f8a19e43679e582ef186e31f2ec320162e1e77734ca01b51734
rsem_1.2.31+dfsg-1.debian.tar.xz 4.9 KiB 108cfac6c972741f3376fb5d154dfead3f6caeda22231a18227020146a59a1fd

Available diffs

No changes file available.

Binary packages built by this source

rsem: RNA-Seq by Expectation-Maximization

 RSEM is a software package for estimating gene and isoform expression
 levels from RNA-Seq data. The RSEM package provides an user-friendly
 interface, supports threads for parallel computation of the EM
 algorithm, single-end and paired-end read data, quality scores,
 variable-length reads and RSPD estimation. In addition, it provides
 posterior mean and 95% credibility interval estimates for expression
 levels. For visualization, It can generate BAM and Wiggle files in both
 transcript-coordinate and genomic-coordinate. Genomic-coordinate files
 can be visualized by both UCSC Genome browser and Broad Institute’s
 Integrative Genomics Viewer (IGV). Transcript-coordinate files can be
 visualized by IGV. RSEM also has its own scripts to generate transcript
 read depth plots in pdf format. The unique feature of RSEM is, the read
 depth plots can be stacked, with read depth contributed to unique reads
 shown in black and contributed to multi-reads shown in red. In addition,
 models learned from data can also be visualized. Last but not least,
 RSEM contains a simulator.

rsem-dbgsym: debug symbols for package rsem

 RSEM is a software package for estimating gene and isoform expression
 levels from RNA-Seq data. The RSEM package provides an user-friendly
 interface, supports threads for parallel computation of the EM
 algorithm, single-end and paired-end read data, quality scores,
 variable-length reads and RSPD estimation. In addition, it provides
 posterior mean and 95% credibility interval estimates for expression
 levels. For visualization, It can generate BAM and Wiggle files in both
 transcript-coordinate and genomic-coordinate. Genomic-coordinate files
 can be visualized by both UCSC Genome browser and Broad Institute’s
 Integrative Genomics Viewer (IGV). Transcript-coordinate files can be
 visualized by IGV. RSEM also has its own scripts to generate transcript
 read depth plots in pdf format. The unique feature of RSEM is, the read
 depth plots can be stacked, with read depth contributed to unique reads
 shown in black and contributed to multi-reads shown in red. In addition,
 models learned from data can also be visualized. Last but not least,
 RSEM contains a simulator.