rsem 1.3.2+dfsg-1 source package in Ubuntu


rsem (1.3.2+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper 12
  * Standards-Version: 4.4.0
  * Remove trailing whitespace in debian/changelog

 -- Andreas Tille <email address hidden>  Fri, 12 Jul 2019 21:52:15 +0200

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Uploaded by:
Debian Med on 2019-07-13
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

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Series Pocket Published Component Section
Eoan release on 2019-07-13 universe misc


File Size SHA-256 Checksum
rsem_1.3.2+dfsg-1.dsc 2.1 KiB 1713d231db2e935d1b8f3e812ac9bdd538c837f032d74772e2a0feef38998c09
rsem_1.3.2+dfsg.orig.tar.xz 268.1 KiB 585f40485df8dc79b27ee36dd39a0c3739d0ad96ba1511efbc4b3b2cf664cfb7
rsem_1.3.2+dfsg-1.debian.tar.xz 34.0 MiB ffc4d72d2696c63d1a9ed655c2383b297ef03a5ac745515ac38d15919bc27dae

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Binary packages built by this source

rsem: RNA-Seq by Expectation-Maximization

 RSEM is a software package for estimating gene and isoform expression
 levels from RNA-Seq data. The RSEM package provides an user-friendly
 interface, supports threads for parallel computation of the EM
 algorithm, single-end and paired-end read data, quality scores,
 variable-length reads and RSPD estimation. In addition, it provides
 posterior mean and 95% credibility interval estimates for expression
 levels. For visualization, It can generate BAM and Wiggle files in both
 transcript-coordinate and genomic-coordinate. Genomic-coordinate files
 can be visualized by both UCSC Genome browser and Broad Institute‚Äôs
 Integrative Genomics Viewer (IGV). Transcript-coordinate files can be
 visualized by IGV. RSEM also has its own scripts to generate transcript
 read depth plots in pdf format. The unique feature of RSEM is, the read
 depth plots can be stacked, with read depth contributed to unique reads
 shown in black and contributed to multi-reads shown in red. In addition,
 models learned from data can also be visualized. Last but not least,
 RSEM contains a simulator.

rsem-dbgsym: debug symbols for rsem