RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-29-server #1 SMP Wed Aug 10 17:10:21 UTC 2011 i686 Buildd toolchain package versions: launchpad-buildd_110~0.IS.08.04 python-lpbuildd_110~0.IS.08.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 18 Feb 15:17:44 ntpdate[15033]: adjust time server 10.211.37.1 offset -0.000352 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '8741f5b684c250a9ed263b463a7ad5fbe9ae4703', '/home/buildd/filecache-default/dcfb20b014e632cba36d6407b45db953a8964aaa'] Unpacking chroot for build 8741f5b684c250a9ed263b463a7ad5fbe9ae4703 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '8741f5b684c250a9ed263b463a7ad5fbe9ae4703'] Mounting chroot for build 8741f5b684c250a9ed263b463a7ad5fbe9ae4703 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '8741f5b684c250a9ed263b463a7ad5fbe9ae4703', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-8741f5b684c250a9ed263b463a7ad5fbe9ae4703 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '8741f5b684c250a9ed263b463a7ad5fbe9ae4703', 'i386'] Updating debian chroot for build 8741f5b684c250a9ed263b463a7ad5fbe9ae4703 Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main i386 Packages [1300 kB] Get:4 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:5 http://ftpmaster.internal precise/main TranslationIndex [3570 B] Get:6 http://ftpmaster.internal precise/universe TranslationIndex [2784 B] Get:7 http://ftpmaster.internal precise/main Translation-en [728 kB] Get:8 http://ftpmaster.internal precise/universe Translation-en [3353 kB] Fetched 10.2 MB in 14s (690 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https ca-certificates cpp-4.6 debconf debianutils e2fslibs e2fsprogs g++-4.6 gcc-4.6 gcc-4.6-base gzip ifupdown initramfs-tools initramfs-tools-bin initscripts insserv libapt-pkg4.12 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libgcc1 libglib2.0-0 libgomp1 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng12-0 libquadmath0 libsasl2-2 libss2 libssl1.0.0 libstdc++6 libstdc++6-4.6-dev libudev0 linux-libc-dev login mountall multiarch-support netbase openssl passwd pkgbinarymangler python2.7-minimal sysv-rc sysvinit-utils udev upstart 53 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 42.8 MB of archives. After this operation, 414 kB disk space will be freed. WARNING: The following packages cannot be authenticated! libnih-dbus1 libc-bin libc6 libnih1 initramfs-tools-bin initramfs-tools mountall insserv sysv-rc initscripts upstart libc6-dev libc-dev-bin libudev0 libglib2.0-0 udev debconf sysvinit-utils libpam0g libpam-modules-bin libpam-modules passwd ifupdown linux-libc-dev libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 debianutils e2fslibs e2fsprogs gzip login libapt-pkg4.12 libcomerr2 libss2 libssl1.0.0 libpng12-0 libsasl2-2 apt libpam-runtime multiarch-support python2.7-minimal netbase apt-transport-https openssl ca-certificates pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libnih-dbus1 i386 1.0.3-4ubuntu9 [15.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libc-bin i386 2.15-0ubuntu2 [1125 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libc6 i386 2.15-0ubuntu2 [3931 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libnih1 i386 1.0.3-4ubuntu9 [53.1 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools-bin i386 0.99ubuntu10 [10.2 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools all 0.99ubuntu10 [48.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main mountall i386 2.34 [68.4 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main insserv i386 1.14.0-2.1ubuntu1 [50.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main sysv-rc all 2.88dsf-13.10ubuntu10 [44.1 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main initscripts i386 2.88dsf-13.10ubuntu10 [27.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main upstart i386 1.4-0ubuntu8 [304 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libc6-dev i386 2.15-0ubuntu2 [5068 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libc-dev-bin i386 2.15-0ubuntu2 [77.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libudev0 i386 175-0ubuntu5 [33.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-0 i386 2.31.16-0ubuntu2 [1198 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main udev i386 175-0ubuntu5 [346 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main debconf all 1.5.41ubuntu2 [142 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main sysvinit-utils i386 2.88dsf-13.10ubuntu10 [60.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libpam0g i386 1.1.3-7ubuntu2 [61.5 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libpam-modules-bin i386 1.1.3-7ubuntu2 [31.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libpam-modules i386 1.1.3-7ubuntu2 [269 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main passwd i386 1:4.1.4.2+svn3283-3ubuntu4 [936 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main ifupdown i386 0.7~beta2ubuntu6 [48.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev i386 3.2.0-17.26 [825 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 i386 4.6.2-14ubuntu2 [28.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base i386 4.6.2-14ubuntu2 [15.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 i386 1:4.6.2-14ubuntu2 [54.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 i386 4.6.2-14ubuntu2 [4658 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libquadmath0 i386 4.6.2-14ubuntu2 [195 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev i386 4.6.2-14ubuntu2 [1606 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 i386 4.6.2-14ubuntu2 [6213 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 i386 4.6.2-14ubuntu2 [7570 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 i386 4.6.2-14ubuntu2 [333 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main debianutils i386 4.2.1ubuntu1 [63.4 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main e2fslibs i386 1.42-1ubuntu1 [200 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main e2fsprogs i386 1.42-1ubuntu1 [971 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main gzip i386 1.4-1ubuntu2 [87.7 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main login i386 1:4.1.4.2+svn3283-3ubuntu4 [288 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu4 [927 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libcomerr2 i386 1.42-1ubuntu1 [57.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libss2 i386 1.42-1ubuntu1 [61.9 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libssl1.0.0 i386 1.0.0g-1ubuntu1 [973 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main libpng12-0 i386 1.2.46-3ubuntu2 [135 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libsasl2-2 i386 2.1.25.dfsg1-3 [69.5 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main apt i386 0.8.16~exp12ubuntu4 [1074 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libpam-runtime all 1.1.3-7ubuntu2 [40.4 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main multiarch-support i386 2.15-0ubuntu2 [4486 B] Get:48 http://ftpmaster.internal/ubuntu/ precise/main python2.7-minimal i386 2.7.2-13ubuntu5 [1607 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main netbase all 4.47ubuntu1 [15.0 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main apt-transport-https i386 0.8.16~exp12ubuntu4 [16.3 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main openssl i386 1.0.0g-1ubuntu1 [510 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main ca-certificates all 20111211 [169 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main pkgbinarymangler all 115 [29.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.8 MB in 3s (10.8 MB/s) (Reading database ... 14372 files and directories currently installed.) Preparing to replace libnih-dbus1 1.0.3-4ubuntu5 (using .../libnih-dbus1_1.0.3-4ubuntu9_i386.deb) ... Unpacking replacement libnih-dbus1 ... Preparing to replace libc-bin 2.13-24ubuntu4 (using .../libc-bin_2.15-0ubuntu2_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.15-0ubuntu2) ... (Reading database ... 14373 files and directories currently installed.) Preparing to replace libc6 2.13-24ubuntu4 (using .../libc6_2.15-0ubuntu2_i386.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.15-0ubuntu2) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14378 files and directories currently installed.) Preparing to replace libnih1 1.0.3-4ubuntu5 (using .../libnih1_1.0.3-4ubuntu9_i386.deb) ... Unpacking replacement libnih1 ... Preparing to replace initramfs-tools-bin 0.99ubuntu9 (using .../initramfs-tools-bin_0.99ubuntu10_i386.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace initramfs-tools 0.99ubuntu9 (using .../initramfs-tools_0.99ubuntu10_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace mountall 2.33 (using .../mountall_2.34_i386.deb) ... Unpacking replacement mountall ... Preparing to replace insserv 1.14.0-2.1 (using .../insserv_1.14.0-2.1ubuntu1_i386.deb) ... Unpacking replacement insserv ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu9 (using .../sysv-rc_2.88dsf-13.10ubuntu10_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu9 (using .../initscripts_2.88dsf-13.10ubuntu10_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.4-0ubuntu5 (using .../upstart_1.4-0ubuntu8_i386.deb) ... Unpacking replacement upstart ... Preparing to replace libc6-dev 2.13-24ubuntu4 (using .../libc6-dev_2.15-0ubuntu2_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-24ubuntu4 (using .../libc-dev-bin_2.15-0ubuntu2_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libudev0 175-0ubuntu3 (using .../libudev0_175-0ubuntu5_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libglib2.0-0 2.31.14-0ubuntu1 (using .../libglib2.0-0_2.31.16-0ubuntu2_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace udev 175-0ubuntu3 (using .../udev_175-0ubuntu5_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace debconf 1.5.41ubuntu1 (using .../debconf_1.5.41ubuntu2_all.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.41ubuntu2) ... (Reading database ... 14390 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu9 (using .../sysvinit-utils_2.88dsf-13.10ubuntu10_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace libpam0g 1.1.3-7ubuntu1 (using .../libpam0g_1.1.3-7ubuntu2_i386.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.3-7ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14390 files and directories currently installed.) Preparing to replace libpam-modules-bin 1.1.3-7ubuntu1 (using .../libpam-modules-bin_1.1.3-7ubuntu2_i386.deb) ... Unpacking replacement libpam-modules-bin ... Setting up libpam-modules-bin (1.1.3-7ubuntu2) ... (Reading database ... 14390 files and directories currently installed.) Preparing to replace libpam-modules 1.1.3-7ubuntu1 (using .../libpam-modules_1.1.3-7ubuntu2_i386.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.3-7ubuntu2) ... (Reading database ... 14390 files and directories currently installed.) Preparing to replace passwd 1:4.1.4.2+svn3283-3ubuntu3 (using .../passwd_1%3a4.1.4.2+svn3283-3ubuntu4_i386.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.4.2+svn3283-3ubuntu4) ... (Reading database ... 14390 files and directories currently installed.) Preparing to replace ifupdown 0.7~beta2ubuntu3 (using .../ifupdown_0.7~beta2ubuntu6_i386.deb) ... Unpacking replacement ifupdown ... Preparing to replace linux-libc-dev 3.2.0-12.21 (using .../linux-libc-dev_3.2.0-17.26_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.6.2-12ubuntu1 (using .../libgomp1_4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.2-12ubuntu1 (using .../gcc-4.6-base_4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.2-14ubuntu2) ... (Reading database ... 14392 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.2-12ubuntu1 (using .../libgcc1_1%3a4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.2-14ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14392 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.2-12ubuntu1 (using .../cpp-4.6_4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.2-12ubuntu1 (using .../libquadmath0_4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.2-12ubuntu1 (using .../libstdc++6-4.6-dev_4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.2-12ubuntu1 (using .../g++-4.6_4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.2-12ubuntu1 (using .../gcc-4.6_4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.2-12ubuntu1 (using .../libstdc++6_4.6.2-14ubuntu2_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.2-14ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14394 files and directories currently installed.) Preparing to replace debianutils 4.1ubuntu1 (using .../debianutils_4.2.1ubuntu1_i386.deb) ... Unpacking replacement debianutils ... Setting up debianutils (4.2.1ubuntu1) ... (Reading database ... 14394 files and directories currently installed.) Preparing to replace e2fslibs 1.42~WIP-2011-10-16-1ubuntu1 (using .../e2fslibs_1.42-1ubuntu1_i386.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.42-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14394 files and directories currently installed.) Preparing to replace e2fsprogs 1.42~WIP-2011-10-16-1ubuntu1 (using .../e2fsprogs_1.42-1ubuntu1_i386.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42-1ubuntu1) ... (Reading database ... 14394 files and directories currently installed.) Preparing to replace gzip 1.4-1ubuntu1 (using .../gzip_1.4-1ubuntu2_i386.deb) ... Unpacking replacement gzip ... Setting up gzip (1.4-1ubuntu2) ... (Reading database ... 14394 files and directories currently installed.) Preparing to replace login 1:4.1.4.2+svn3283-3ubuntu3 (using .../login_1%3a4.1.4.2+svn3283-3ubuntu4_i386.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.2+svn3283-3ubuntu4) ... Installing new version of config file /etc/securetty ... (Reading database ... 14394 files and directories currently installed.) Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu3 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu4_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14394 files and directories currently installed.) Preparing to replace libcomerr2 1.42~WIP-2011-10-16-1ubuntu1 (using .../libcomerr2_1.42-1ubuntu1_i386.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.42-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14394 files and directories currently installed.) Preparing to replace libss2 1.42~WIP-2011-10-16-1ubuntu1 (using .../libss2_1.42-1ubuntu1_i386.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.42-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14394 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.0e-3ubuntu1 (using .../libssl1.0.0_1.0.0g-1ubuntu1_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.0g-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14394 files and directories currently installed.) Preparing to replace libpng12-0 1.2.46-3ubuntu1 (using .../libpng12-0_1.2.46-3ubuntu2_i386.deb) ... Unpacking replacement libpng12-0 ... Preparing to replace libsasl2-2 2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3 (using .../libsasl2-2_2.1.25.dfsg1-3_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace apt 0.8.16~exp12ubuntu3 (using .../apt_0.8.16~exp12ubuntu4_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu4) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 14394 files and directories currently installed.) Preparing to replace libpam-runtime 1.1.3-7ubuntu1 (using .../libpam-runtime_1.1.3-7ubuntu2_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-7ubuntu2) ... (Reading database ... 14394 files and directories currently installed.) Preparing to replace multiarch-support 2.13-24ubuntu4 (using .../multiarch-support_2.15-0ubuntu2_i386.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.15-0ubuntu2) ... (Reading database ... 14394 files and directories currently installed.) Preparing to replace python2.7-minimal 2.7.2-13ubuntu4 (using .../python2.7-minimal_2.7.2-13ubuntu5_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.2-13ubuntu5) ... (Reading database ... 14394 files and directories currently installed.) Preparing to replace netbase 4.46ubuntu1 (using .../netbase_4.47ubuntu1_all.deb) ... Unpacking replacement netbase ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu3 (using .../apt-transport-https_0.8.16~exp12ubuntu4_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace openssl 1.0.0e-3ubuntu1 (using .../openssl_1.0.0g-1ubuntu1_i386.deb) ... Unpacking replacement openssl ... Preparing to replace ca-certificates 20110502+nmu1ubuntu5 (using .../ca-certificates_20111211_all.deb) ... Unpacking replacement ca-certificates ... Preparing to replace pkgbinarymangler 114 (using .../pkgbinarymangler_115_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libnih1 (1.0.3-4ubuntu9) ... Setting up libnih-dbus1 (1.0.3-4ubuntu9) ... Setting up libudev0 (175-0ubuntu5) ... Setting up initramfs-tools-bin (0.99ubuntu10) ... Setting up libglib2.0-0 (2.31.16-0ubuntu2) ... No schema files found: doing nothing. Setting up sysvinit-utils (2.88dsf-13.10ubuntu10) ... Setting up insserv (1.14.0-2.1ubuntu1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu10) ... Setting up libc-dev-bin (2.15-0ubuntu2) ... Setting up linux-libc-dev (3.2.0-17.26) ... Setting up libc6-dev (2.15-0ubuntu2) ... Setting up libgomp1 (4.6.2-14ubuntu2) ... Setting up cpp-4.6 (4.6.2-14ubuntu2) ... Setting up libquadmath0 (4.6.2-14ubuntu2) ... Setting up gcc-4.6 (4.6.2-14ubuntu2) ... Setting up libpng12-0 (1.2.46-3ubuntu2) ... Setting up libsasl2-2 (2.1.25.dfsg1-3) ... Setting up apt-transport-https (0.8.16~exp12ubuntu4) ... Setting up openssl (1.0.0g-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up ca-certificates (20111211) ... Clearing symlinks in /etc/ssl/certs...done. Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up pkgbinarymangler (115) ... Setting up g++-4.6 (4.6.2-14ubuntu2) ... Setting up upstart (1.4-0ubuntu8) ... Installing new version of config file /etc/init/tty1.conf ... Installing new version of config file /etc/init/tty2.conf ... Installing new version of config file /etc/init/tty3.conf ... Installing new version of config file /etc/init/tty4.conf ... Installing new version of config file /etc/init/tty5.conf ... Installing new version of config file /etc/init/tty6.conf ... Setting up initramfs-tools (0.99ubuntu10) ... update-initramfs: deferring update (trigger activated) Setting up udev (175-0ubuntu5) ... Installing new version of config file /etc/init/udevtrigger.conf ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up mountall (2.34) ... Installing new version of config file /etc/init/mounted-debugfs.conf ... Setting up libstdc++6-4.6-dev (4.6.2-14ubuntu2) ... Setting up initscripts (2.88dsf-13.10ubuntu10) ... Setting up netbase (4.47ubuntu1) ... Installing new version of config file /etc/services ... Setting up ifupdown (0.7~beta2ubuntu6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '8741f5b684c250a9ed263b463a7ad5fbe9ae4703', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'ruby-bio_1.4.2-2.dsc'] Initiating build 8741f5b684c250a9ed263b463a7ad5fbe9ae4703 with 2 processor cores. Automatic build of ruby-bio_1.4.2-2 on rothera by sbuild/i386 1.170.5 Build started at 20120218-1518 ****************************************************************************** ruby-bio_1.4.2-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.50~), gem2deb (>= 0.2.4~), ruby-libxml Build-Depends-Indep: docbook-to-man, rdtool Checking for already installed source dependencies... debhelper: missing gem2deb: missing ruby-libxml: missing docbook-to-man: missing rdtool: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper gem2deb ruby-libxml docbook-to-man rdtool Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils devscripts docbook file gettext gettext-base groff-base html2text intltool-debian libcroco3 libexpat1 libgettextpo0 libmagic1 libpipeline1 librd-ruby1.8 libreadline5 libruby1.8 libruby1.9.1 libsp1c2 libunistring0 libxml2 libyaml-0-2 man-db mime-support po-debconf python python2.7 ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems rubygems1.8 sgml-base sgml-data sp xml-core Suggested packages: wamerican wordlist whois vacation dh-make bsd-mailx mailx cvs-buildpackage debian-keyring devscripts-el equivs gnuplot libauthen-sasl-perl libcrypt-ssleay-perl libfile-desktopentry-perl libnet-smtp-ssl-perl libsoap-lite-perl libterm-size-perl libyaml-syck-perl mutt ssh-client svn-buildpackage w3m psgml docbook-dsssl docbook-xml docbook-defguide gettext-doc groff less www-browser libmail-box-perl python-doc python-tk python2.7-doc ruby1.8-examples ri1.8 ruby1.9.1-examples ri1.9.1 graphviz sgml-base-doc perlsgml doc-html-w3 opensp libxml2-utils doc-base Recommended packages: at curl wget dctrl-tools dput dupload libjson-perl libparse-debcontrol-perl liburi-perl libwww-perl lintian patchutils python-debian python-magic strace unzip wdiff libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper devscripts docbook docbook-to-man file gem2deb gettext gettext-base groff-base html2text intltool-debian libcroco3 libexpat1 libgettextpo0 libmagic1 libpipeline1 librd-ruby1.8 libreadline5 libruby1.8 libruby1.9.1 libsp1c2 libunistring0 libxml2 libyaml-0-2 man-db mime-support po-debconf python python2.7 rdtool ruby-libxml ruby1.8 ruby1.8-dev ruby1.9.1 ruby1.9.1-dev rubygems rubygems1.8 sgml-base sgml-data sp xml-core 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 20.5 MB of archives. After this operation, 72.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libreadline5 libyaml-0-2 libmagic1 file mime-support python2.7 python bsdmainutils gettext-base groff-base man-db sgml-base xml-core html2text gettext intltool-debian po-debconf debhelper devscripts sgml-data docbook libsp1c2 sp docbook-to-man libruby1.8 ruby1.8 rubygems rubygems1.8 ruby1.8-dev libruby1.9.1 ruby1.9.1 ruby1.9.1-dev gem2deb librd-ruby1.8 rdtool ruby-libxml Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 i386 2.0.1-7.2 [130 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.0-5 [25.7 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libxml2 i386 2.7.8.dfsg-5.1ubuntu3 [661 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.4-2 [99.6 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libreadline5 i386 5.2-11 [123 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libyaml-0-2 i386 0.1.4-2 [56.9 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main python2.7 i386 2.7.2-13ubuntu5 [2660 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main python all 2.7.2-9ubuntu2 [168 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3 [196 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-6 [1024 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-1 [747 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main sgml-base all 1.26+nmu1ubuntu1 [8360 B] Get:19 http://ftpmaster.internal/ubuntu/ precise/main xml-core all 0.13 [23.4 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu2 [618 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main devscripts i386 2.11.4ubuntu1 [618 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main sgml-data all 2.0.6 [271 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main docbook all 4.5-4 [450 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libsp1c2 i386 1.3.4-1.2.1-47.1 [1422 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main sp i386 1.3.4-1.2.1-47.1 [159 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main docbook-to-man i386 1:2.0.0-28 [72.4 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libruby1.8 i386 1.8.7.352-2 [1780 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main ruby1.8 i386 1.8.7.352-2 [35.6 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main rubygems all 1.8.15-1 [445 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main rubygems1.8 all 1.8.15-1 [2330 B] Get:35 http://ftpmaster.internal/ubuntu/ precise/main ruby1.8-dev i386 1.8.7.352-2 [626 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libruby1.9.1 i386 1.9.3.0-1ubuntu1 [4191 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main ruby1.9.1 i386 1.9.3.0-1ubuntu1 [37.5 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main ruby1.9.1-dev i386 1.9.3.0-1ubuntu1 [1224 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main gem2deb all 0.2.13 [39.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/universe librd-ruby1.8 all 0.6.22-1 [36.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/universe rdtool all 0.6.22-1 [46.5 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/universe ruby-libxml i386 2.2.2-2 [134 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.5 MB in 1s (10.8 MB/s) Selecting previously unselected package libexpat1. (Reading database ... 14386 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu3_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.4-2_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package libreadline5. Unpacking libreadline5 (from .../libreadline5_5.2-11_i386.deb) ... Selecting previously unselected package libyaml-0-2. Unpacking libyaml-0-2 (from .../libyaml-0-2_0.1.4-2_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_i386.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.51-1ubuntu1_all.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.2-13ubuntu5_i386.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.2-9ubuntu2_all.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-1_i386.deb) ... Selecting previously unselected package sgml-base. Unpacking sgml-base (from .../sgml-base_1.26+nmu1ubuntu1_all.deb) ... Selecting previously unselected package xml-core. Unpacking xml-core (from .../archives/xml-core_0.13_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu2_all.deb) ... Selecting previously unselected package devscripts. Unpacking devscripts (from .../devscripts_2.11.4ubuntu1_i386.deb) ... Selecting previously unselected package sgml-data. Unpacking sgml-data (from .../sgml-data_2.0.6_all.deb) ... Selecting previously unselected package docbook. Unpacking docbook (from .../archives/docbook_4.5-4_all.deb) ... Selecting previously unselected package libsp1c2. Unpacking libsp1c2 (from .../libsp1c2_1.3.4-1.2.1-47.1_i386.deb) ... Selecting previously unselected package sp. Unpacking sp (from .../sp_1.3.4-1.2.1-47.1_i386.deb) ... Selecting previously unselected package docbook-to-man. Unpacking docbook-to-man (from .../docbook-to-man_1%3a2.0.0-28_i386.deb) ... Selecting previously unselected package libruby1.8. Unpacking libruby1.8 (from .../libruby1.8_1.8.7.352-2_i386.deb) ... Selecting previously unselected package ruby1.8. Unpacking ruby1.8 (from .../ruby1.8_1.8.7.352-2_i386.deb) ... Selecting previously unselected package rubygems. Unpacking rubygems (from .../rubygems_1.8.15-1_all.deb) ... Selecting previously unselected package rubygems1.8. Unpacking rubygems1.8 (from .../rubygems1.8_1.8.15-1_all.deb) ... Selecting previously unselected package ruby1.8-dev. Unpacking ruby1.8-dev (from .../ruby1.8-dev_1.8.7.352-2_i386.deb) ... Selecting previously unselected package libruby1.9.1. Unpacking libruby1.9.1 (from .../libruby1.9.1_1.9.3.0-1ubuntu1_i386.deb) ... Selecting previously unselected package ruby1.9.1. Unpacking ruby1.9.1 (from .../ruby1.9.1_1.9.3.0-1ubuntu1_i386.deb) ... Selecting previously unselected package ruby1.9.1-dev. Unpacking ruby1.9.1-dev (from .../ruby1.9.1-dev_1.9.3.0-1ubuntu1_i386.deb) ... Selecting previously unselected package gem2deb. Unpacking gem2deb (from .../gem2deb_0.2.13_all.deb) ... Selecting previously unselected package librd-ruby1.8. Unpacking librd-ruby1.8 (from .../librd-ruby1.8_0.6.22-1_all.deb) ... Selecting previously unselected package rdtool. Unpacking rdtool (from .../rdtool_0.6.22-1_all.deb) ... Selecting previously unselected package ruby-libxml. Unpacking ruby-libxml (from .../ruby-libxml_2.2.2-2_i386.deb) ... Setting up libexpat1 (2.0.1-7.2) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu3) ... Setting up libcroco3 (0.6.4-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libreadline5 (5.2-11) ... Setting up libyaml-0-2 (0.1.4-2) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7 (2.7.2-13ubuntu5) ... Setting up python (2.7.2-9ubuntu2) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-6) ... Setting up man-db (2.6.1-1) ... Building database of manual pages ... Setting up sgml-base (1.26+nmu1ubuntu1) ... Setting up xml-core (0.13) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up debhelper (9.20120115ubuntu2) ... Setting up devscripts (2.11.4ubuntu1) ... Setting up sgml-data (2.0.6) ... Setting up docbook (4.5-4) ... Setting up libsp1c2 (1.3.4-1.2.1-47.1) ... Setting up sp (1.3.4-1.2.1-47.1) ... Setting up docbook-to-man (1:2.0.0-28) ... Setting up libruby1.8 (1.8.7.352-2) ... Setting up ruby1.8 (1.8.7.352-2) ... update-alternatives: using /usr/bin/ruby1.8 to provide /usr/bin/ruby (ruby) in auto mode. Setting up rubygems (1.8.15-1) ... Setting up rubygems1.8 (1.8.15-1) ... Setting up ruby1.8-dev (1.8.7.352-2) ... Setting up libruby1.9.1 (1.9.3.0-1ubuntu1) ... Setting up ruby1.9.1 (1.9.3.0-1ubuntu1) ... Setting up ruby1.9.1-dev (1.9.3.0-1ubuntu1) ... Setting up gem2deb (0.2.13) ... Setting up librd-ruby1.8 (0.6.22-1) ... Setting up rdtool (0.6.22-1) ... Setting up ruby-libxml (2.2.2-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu2 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu5 gcc-4.6_4.6.2-14ubuntu2 g++-4.6_4.6.2-14ubuntu2 binutils_2.22-5ubuntu1 libstdc++6-4.6-dev_4.6.2-14ubuntu2 libstdc++6_4.6.2-14ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Feb 17 21:45:39 2012 UTC using RSA key ID C1DB921F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ruby-bio_1.4.2-2.dsc dpkg-source: info: extracting ruby-bio in ruby-bio-1.4.2 dpkg-source: info: unpacking ruby-bio_1.4.2.orig.tar.gz dpkg-source: info: unpacking ruby-bio_1.4.2-2.debian.tar.gz dpkg-source: info: applying disable-test-soap.patch dpkg-source: info: applying fix_definition_CutSymbol_in_test_cut_symbol.patch dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package ruby-bio dpkg-buildpackage: source version 1.4.2-2 dpkg-source --before-build ruby-bio-1.4.2 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean --buildsystem=ruby --with ruby dh_testdir -O--buildsystem=ruby debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/ruby-bio-1.4.2' dh_auto_clean Entering dh_ruby --clean Leaving dh_ruby --clean rm -f br_biofetch.1 br_bioflat.1 br_biogetseq.1 br_pmfetch.1 make[1]: Leaving directory `/build/buildd/ruby-bio-1.4.2' dh_clean -O--buildsystem=ruby debian/rules build dh build --buildsystem=ruby --with ruby dh_testdir -O--buildsystem=ruby dh_auto_configure -O--buildsystem=ruby debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/ruby-bio-1.4.2' dh_auto_build docbook-to-man debian/br_biofetch.rb.sgml > br_biofetch.1 docbook-to-man debian/br_bioflat.rb.sgml > br_bioflat.1 docbook-to-man debian/br_biogetseq.rb.sgml > br_biogetseq.1 docbook-to-man debian/br_pmfetch.rb.sgml > br_pmfetch.1 make[1]: Leaving directory `/build/buildd/ruby-bio-1.4.2' dh_auto_test -O--buildsystem=ruby /usr/bin/fakeroot debian/rules binary dh binary --buildsystem=ruby --with ruby dh_testroot -O--buildsystem=ruby dh_prep -O--buildsystem=ruby dh_installdirs -O--buildsystem=ruby debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/ruby-bio-1.4.2' dh_auto_install Entering dh_ruby --install install -d /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin install -D -m755 bin/br_pmfetch.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/br_pmfetch.rb install -D -m755 bin/br_biofetch.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/br_biofetch.rb install -D -m755 bin/br_biogetseq.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/br_biogetseq.rb install -D -m755 bin/bioruby /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/bioruby install -D -m755 bin/br_bioflat.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/br_bioflat.rb install -d /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby install -D -m644 lib/bio.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio.rb install -D -m644 lib/bio/compat/features.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/compat/features.rb install -D -m644 lib/bio/compat/references.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/compat/references.rb install -D -m644 lib/bio/util/color_scheme/buried.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/buried.rb install -D -m644 lib/bio/util/color_scheme/hydropathy.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/hydropathy.rb install -D -m644 lib/bio/util/color_scheme/helix.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/helix.rb install -D -m644 lib/bio/util/color_scheme/strand.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/strand.rb install -D -m644 lib/bio/util/color_scheme/turn.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/turn.rb install -D -m644 lib/bio/util/color_scheme/taylor.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/taylor.rb install -D -m644 lib/bio/util/color_scheme/nucleotide.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/nucleotide.rb install -D -m644 lib/bio/util/color_scheme/zappo.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/zappo.rb install -D -m644 lib/bio/util/color_scheme.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme.rb install -D -m644 lib/bio/util/contingency_table.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/contingency_table.rb install -D -m644 lib/bio/util/sirna.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/sirna.rb install -D -m644 lib/bio/util/restriction_enzyme.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme.rb install -D -m644 lib/bio/util/restriction_enzyme/string_formatting.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/string_formatting.rb install -D -m644 lib/bio/util/restriction_enzyme/enzymes.yaml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/enzymes.yaml install -D -m644 lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/vertical_cut_range.rb install -D -m644 lib/bio/util/restriction_enzyme/range/cut_ranges.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_ranges.rb install -D -m644 lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/horizontal_cut_range.rb install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range.rb install -D -m644 lib/bio/util/restriction_enzyme/range/cut_range.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_range.rb install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragments.rb install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragment.rb install -D -m644 lib/bio/util/restriction_enzyme/single_strand.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand.rb install -D -m644 lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations.rb install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb install -D -m644 lib/bio/util/restriction_enzyme/dense_int_array.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/dense_int_array.rb install -D -m644 lib/bio/util/restriction_enzyme/analysis.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis.rb install -D -m644 lib/bio/util/restriction_enzyme/analysis_basic.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis_basic.rb install -D -m644 lib/bio/util/restriction_enzyme/sorted_num_array.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/sorted_num_array.rb install -D -m644 lib/bio/util/restriction_enzyme/cut_symbol.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/cut_symbol.rb install -D -m644 lib/bio/util/restriction_enzyme/single_strand_complement.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand_complement.rb install -D -m644 lib/bio/util/restriction_enzyme/double_stranded.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded.rb install -D -m644 lib/bio/command.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/command.rb install -D -m644 lib/bio/version.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/version.rb install -D -m644 lib/bio/sequence/format_raw.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/format_raw.rb install -D -m644 lib/bio/sequence/na.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/na.rb install -D -m644 lib/bio/sequence/dblink.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/dblink.rb install -D -m644 lib/bio/sequence/common.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/common.rb install -D -m644 lib/bio/sequence/aa.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/aa.rb install -D -m644 lib/bio/sequence/quality_score.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/quality_score.rb install -D -m644 lib/bio/sequence/adapter.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/adapter.rb install -D -m644 lib/bio/sequence/compat.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/compat.rb install -D -m644 lib/bio/sequence/generic.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/generic.rb install -D -m644 lib/bio/sequence/format.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/format.rb install -D -m644 lib/bio/sequence/sequence_masker.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/sequence_masker.rb install -D -m644 lib/bio/feature.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/feature.rb install -D -m644 lib/bio/tree.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/tree.rb install -D -m644 lib/bio/location.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/location.rb install -D -m644 lib/bio/alignment.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/alignment.rb install -D -m644 lib/bio/db.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db.rb install -D -m644 lib/bio/sequence.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence.rb install -D -m644 lib/bio/io/keggapi.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/keggapi.rb install -D -m644 lib/bio/io/pubmed.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/pubmed.rb install -D -m644 lib/bio/io/higet.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/higet.rb install -D -m644 lib/bio/io/ensembl.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ensembl.rb install -D -m644 lib/bio/io/soapwsdl.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/soapwsdl.rb install -D -m644 lib/bio/io/ncbirest.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ncbirest.rb install -D -m644 lib/bio/io/ncbisoap.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ncbisoap.rb install -D -m644 lib/bio/io/sql.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/sql.rb install -D -m644 lib/bio/io/fetch.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fetch.rb install -D -m644 lib/bio/io/togows.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/togows.rb install -D -m644 lib/bio/io/registry.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/registry.rb install -D -m644 lib/bio/io/ddbjrest.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ddbjrest.rb install -D -m644 lib/bio/io/ebisoap.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ebisoap.rb install -D -m644 lib/bio/io/flatfile/bdb.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/bdb.rb install -D -m644 lib/bio/io/flatfile/indexer.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/indexer.rb install -D -m644 lib/bio/io/flatfile/splitter.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/splitter.rb install -D -m644 lib/bio/io/flatfile/buffer.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/buffer.rb install -D -m644 lib/bio/io/flatfile/autodetection.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/autodetection.rb install -D -m644 lib/bio/io/flatfile/index.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/index.rb install -D -m644 lib/bio/io/flatfile.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile.rb install -D -m644 lib/bio/io/hinv.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/hinv.rb install -D -m644 lib/bio/io/das.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/das.rb install -D -m644 lib/bio/io/ddbjxml.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ddbjxml.rb install -D -m644 lib/bio/io/biosql/config/database.yml 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/build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/model.rb install -D -m644 lib/bio/db/pdb/residue.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/residue.rb install -D -m644 lib/bio/db/pdb/utils.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/utils.rb install -D -m644 lib/bio/db/pdb/atom.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/atom.rb install -D -m644 lib/bio/db/pdb/pdb.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/pdb.rb install -D -m644 lib/bio/db/pdb/chain.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chain.rb install -D -m644 lib/bio/db/pdb/chemicalcomponent.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chemicalcomponent.rb install -D -m644 lib/bio/db/nbrf.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nbrf.rb install -D -m644 lib/bio/db/fastq/fastq_to_biosequence.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/fastq_to_biosequence.rb install -D -m644 lib/bio/db/fastq/format_fastq.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/format_fastq.rb install -D -m644 lib/bio/db/prosite.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/prosite.rb install -D -m644 lib/bio/db/fastq.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq.rb install -D -m644 lib/bio/db/medline.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/medline.rb install -D -m644 lib/bio/db/embl/trembl.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/trembl.rb install -D -m644 lib/bio/db/embl/uniprot.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/uniprot.rb install -D -m644 lib/bio/db/embl/sptr.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/sptr.rb install -D -m644 lib/bio/db/embl/format_embl.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/format_embl.rb install -D -m644 lib/bio/db/embl/embl.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl.rb install -D -m644 lib/bio/db/embl/common.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/common.rb install -D -m644 lib/bio/db/embl/embl_to_biosequence.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl_to_biosequence.rb install -D -m644 lib/bio/db/embl/swissprot.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/swissprot.rb install -D -m644 lib/bio/db/soft.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/soft.rb install -D -m644 lib/bio/db/fantom.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fantom.rb install -D -m644 lib/bio/db/genbank/format_genbank.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/format_genbank.rb install -D -m644 lib/bio/db/genbank/genpept.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genpept.rb install -D -m644 lib/bio/db/genbank/common.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/common.rb install -D -m644 lib/bio/db/genbank/ddbj.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/ddbj.rb install -D -m644 lib/bio/db/genbank/genbank.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank.rb install -D -m644 lib/bio/db/genbank/refseq.rb 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lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml install -D -m644 lib/bio/shell/core.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/core.rb install -D -m644 lib/bio/shell/interface.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/interface.rb install -D -m644 lib/bio/shell/web.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/web.rb install -D -m644 lib/bio/shell/setup.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/setup.rb install -D -m644 lib/bio/shell/irb.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/irb.rb install -D -m644 lib/bio/shell/object.rb /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/object.rb Rewriting shebang line of /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/br_pmfetch.rb Rewriting shebang line of /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/br_biofetch.rb Rewriting shebang line of /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/br_biogetseq.rb Rewriting shebang line of /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/bioruby Rewriting shebang line of /build/buildd/ruby-bio-1.4.2/debian/ruby-bio/usr/bin/br_bioflat.rb /usr/bin/ruby1.8 -I/usr/lib/ruby/vendor_ruby /usr/lib/ruby/vendor_ruby/gem2deb/test_runner.rb Loaded suite debian/ruby-tests Started 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Finished in 87.0314 seconds. 3601 tests, 20938 assertions, 0 failures, 0 errors /usr/bin/ruby1.9.1 -I/usr/lib/ruby/vendor_ruby /usr/lib/ruby/vendor_ruby/gem2deb/test_runner.rb Run options: # Running tests: ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Finished tests in 39.405403s, 91.3834 tests/s, 531.3484 assertions/s. 3601 tests, 20938 assertions, 0 failures, 0 errors, 0 skips Leaving dh_ruby --install for FILE in `ls debian/ruby-bio/usr/bin/*rb`; do \ BINNAME=$(echo $FILE | sed 's/\.rb$//'); \ mv $FILE $BINNAME; \ done make[1]: Leaving directory `/build/buildd/ruby-bio-1.4.2' dh_install -O--buildsystem=ruby dh_installdocs -O--buildsystem=ruby dh_installchangelogs -O--buildsystem=ruby dh_installexamples -O--buildsystem=ruby dh_installman -O--buildsystem=ruby dh_installcatalogs -O--buildsystem=ruby dh_installcron -O--buildsystem=ruby dh_installdebconf -O--buildsystem=ruby dh_installemacsen -O--buildsystem=ruby dh_installifupdown -O--buildsystem=ruby dh_installinfo -O--buildsystem=ruby dh_installinit -O--buildsystem=ruby dh_installmenu -O--buildsystem=ruby dh_installmime -O--buildsystem=ruby dh_installmodules -O--buildsystem=ruby dh_installlogcheck -O--buildsystem=ruby dh_installlogrotate -O--buildsystem=ruby dh_installpam -O--buildsystem=ruby dh_installppp -O--buildsystem=ruby dh_installudev -O--buildsystem=ruby dh_installwm -O--buildsystem=ruby dh_installxfonts -O--buildsystem=ruby dh_installgsettings -O--buildsystem=ruby dh_bugfiles -O--buildsystem=ruby dh_ucf -O--buildsystem=ruby dh_lintian -O--buildsystem=ruby dh_gconf -O--buildsystem=ruby dh_icons -O--buildsystem=ruby dh_perl -O--buildsystem=ruby dh_usrlocal -O--buildsystem=ruby dh_link -O--buildsystem=ruby dh_compress -X.rb -O--buildsystem=ruby dh_fixperms -O--buildsystem=ruby dh_installdeb -O--buildsystem=ruby dh_gencontrol -O--buildsystem=ruby dpkg-gencontrol: warning: Depends field of package ruby-bio: unknown substitution variable ${shlibs:Depends} dh_md5sums -O--buildsystem=ruby dh_builddeb -O--buildsystem=ruby INFO: pkgstriptranslations version 115 pkgstriptranslations: processing ruby-bio (in debian/ruby-bio); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ruby-bio/DEBIAN/control, package ruby-bio, directory debian/ruby-bio pkgstripfiles: Truncating usr/share/doc/ruby-bio/changelog.Debian.gz to topmost ten records OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png 64x64 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 6836 bytes Input file size = 6951 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 IDAT size = 6832 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 6750 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 6723 Selecting parameters: zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 6723 Output IDAT size = 6723 bytes (113 bytes decrease) Output file size = 6838 bytes (113 bytes = 1.63% decrease) 6838 6838 100% ./usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png (Bigger 7110) 6838 6838 100% pkgstripfiles: PNG optimization for package ruby-bio took 0 s dpkg-deb: warning: 'debian/ruby-bio/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/ruby-bio/DEBIAN/control' contains user-defined field 'Ruby-Versions' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `ruby-bio' in `../ruby-bio_1.4.2-2_all.deb'. INFO: pkgstriptranslations version 115 pkgstriptranslations: processing libbio-ruby1.8 (in debian/libbio-ruby1.8); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-ruby1.8/DEBIAN/control, package libbio-ruby1.8, directory debian/libbio-ruby1.8 Searching for duplicated docs in dependency ruby-bio... symlinking changelog.Debian.gz in libbio-ruby1.8 to file in ruby-bio pkgstripfiles: PNG optimization for package libbio-ruby1.8 took 0 s dpkg-deb: warning: 'debian/libbio-ruby1.8/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbio-ruby1.8' in `../libbio-ruby1.8_1.4.2-2_all.deb'. INFO: pkgstriptranslations version 115 pkgstriptranslations: processing libbio-ruby (in debian/libbio-ruby); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbio-ruby/DEBIAN/control, package libbio-ruby, directory debian/libbio-ruby Searching for duplicated docs in dependency ruby-bio... symlinking changelog.Debian.gz in libbio-ruby to file in ruby-bio pkgstripfiles: PNG optimization for package libbio-ruby took 0 s dpkg-deb: warning: 'debian/libbio-ruby/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbio-ruby' in `../libbio-ruby_1.4.2-2_all.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../ruby-bio_1.4.2-2_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build ruby-bio-1.4.2 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120218-1521 chroot-autobuild/build/buildd/ruby-bio_1.4.2-2_all.deb: new debian package, version 2.0. size 807118 bytes: control archive= 10729 bytes. 1124 bytes, 23 lines control 30285 bytes, 349 lines md5sums Package: ruby-bio Version: 1.4.2-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Ruby Extras Maintainers Installed-Size: 3021 Depends: ruby | ruby-interpreter Recommends: blast2, hmmer, mafft, muscle, probcons, sim4, t-coffee Suggests: clustalw, emboss Breaks: libbio-ruby (<< 1.4.1-2~), libbio-ruby1.8 (<< 1.4.1-2~) Replaces: libbio-ruby (<< 1.4.1-2~), libbio-ruby1.8 (<< 1.4.1-2~) Provides: libbio-ruby, libbio-ruby1.8 Section: ruby Priority: optional Homepage: http://www.bioruby.org/ Description: Ruby tools for computational molecular biology BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language. Design philosophy of the BioRuby library is KISS (keep it simple, stupid) to maximize the usability and the efficiency for biologists as a daily tool. The project was started in Japan and supported by University of Tokyo (Human Genome Center), Kyoto University (Bioinformatics Center) and the Open Bio Foundation. Ruby-Versions: ruby1.8 ruby1.9.1 chroot-autobuild/build/buildd/libbio-ruby1.8_1.4.2-2_all.deb: new debian package, version 2.0. size 2296 bytes: control archive= 519 bytes. 504 bytes, 14 lines control 73 bytes, 1 lines md5sums Package: libbio-ruby1.8 Source: ruby-bio Version: 1.4.2-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Ruby Extras Maintainers Installed-Size: 30 Depends: ruby-bio Section: oldlibs Priority: extra Homepage: http://www.bioruby.org/ Description: Transitional package for ruby-bio This is a transitional package to ease upgrades to the ruby-bio package. It can safely be removed. chroot-autobuild/build/buildd/libbio-ruby_1.4.2-2_all.deb: new debian package, version 2.0. size 2292 bytes: control archive= 517 bytes. 501 bytes, 14 lines control 70 bytes, 1 lines md5sums Package: libbio-ruby Source: ruby-bio Version: 1.4.2-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Ruby Extras Maintainers Installed-Size: 30 Depends: ruby-bio Section: oldlibs Priority: extra Homepage: http://www.bioruby.org/ Description: Transitional package for ruby-bio This is a transitional package to ease upgrades to the ruby-bio package. It can safely be removed. chroot-autobuild/build/buildd/ruby-bio_1.4.2-2_all.deb: drwxr-xr-x root/root 0 2012-02-18 15:21 ./ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/bin/ -rwxr-xr-x root/root 7344 2012-02-18 15:19 ./usr/bin/br_bioflat -rwxr-xr-x root/root 10106 2012-02-18 15:19 ./usr/bin/br_pmfetch -rwxr-xr-x root/root 979 2012-02-18 15:19 ./usr/bin/bioruby -rwxr-xr-x root/root 799 2012-02-18 15:19 ./usr/bin/br_biogetseq -rwxr-xr-x root/root 1256 2012-02-18 15:19 ./usr/bin/br_biofetch drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/ drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/ -rw-r--r-- root/root 9768 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio.rb drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/ drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/compat/ -rw-r--r-- root/root 4603 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/compat/features.rb -rw-r--r-- root/root 3676 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/compat/references.rb drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/ drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/ -rw-r--r-- root/root 1273 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/buried.rb -rw-r--r-- root/root 1377 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/hydropathy.rb -rw-r--r-- root/root 1276 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/helix.rb -rw-r--r-- root/root 1277 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/strand.rb -rw-r--r-- root/root 1273 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/turn.rb -rw-r--r-- root/root 1099 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/taylor.rb -rw-r--r-- root/root 690 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/nucleotide.rb -rw-r--r-- root/root 1095 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme/zappo.rb -rw-r--r-- root/root 5060 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/color_scheme.rb -rw-r--r-- root/root 11779 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/contingency_table.rb -rw-r--r-- root/root 7030 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/sirna.rb -rw-r--r-- root/root 8254 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme.rb drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/ -rw-r--r-- root/root 2893 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/string_formatting.rb -rw-r--r-- root/root 89647 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/enzymes.yaml drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/ -rw-r--r-- root/root 2560 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/vertical_cut_range.rb -rw-r--r-- root/root 1240 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_ranges.rb -rw-r--r-- root/root 1832 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/horizontal_cut_range.rb -rw-r--r-- root/root 9541 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range.rb -rw-r--r-- root/root 593 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_range.rb drwxr-xr-x root/root 0 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/ -rw-r--r-- root/root 949 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragments.rb -rw-r--r-- root/root 9209 2012-02-18 15:19 ./usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb -rw-r--r-- root/root 1244 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root/root 1694 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/genome2tab.rb -rwxr-xr-x root/root 6775 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/goslim.rb -rwxr-xr-x root/root 1215 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/gt2fasta.rb -rwxr-xr-x root/root 990 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/na2aa.rb -rwxr-xr-x root/root 1379 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/pmfetch.rb -rwxr-xr-x root/root 1353 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/pmsearch.rb -rw-r--r-- root/root 5066 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/psortplot_html.rb -rwxr-xr-x root/root 2291 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/ssearch2tab.rb -rw-r--r-- root/root 4743 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/tdiary.rb -rw-r--r-- root/root 6075 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/test_phyloxml_big.rb -rw-r--r-- root/root 208423 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/test_restriction_enzyme_long.rb -rwxr-xr-x root/root 2449 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/tfastx2tab.rb -rwxr-xr-x root/root 5964 2011-08-30 01:12 ./usr/share/doc/ruby-bio/examples/vs-genes.rb -rw-r--r-- root/root 3328 2011-08-30 01:12 ./usr/share/doc/ruby-bio/README.rdoc.gz -rw-r--r-- root/root 3837 2011-08-30 01:12 ./usr/share/doc/ruby-bio/README_DEV.rdoc.gz drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/share/man/ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/share/man/man1/ -rw-r--r-- root/root 1097 2012-02-18 15:21 ./usr/share/man/man1/br_bioflat.1.gz -rw-r--r-- root/root 1186 2012-02-18 15:21 ./usr/share/man/man1/br_pmfetch.1.gz -rw-r--r-- root/root 848 2012-02-18 15:21 ./usr/share/man/man1/br_biofetch.1.gz -rw-r--r-- root/root 677 2012-02-18 15:21 ./usr/share/man/man1/br_biogetseq.1.gz chroot-autobuild/build/buildd/libbio-ruby1.8_1.4.2-2_all.deb: drwxr-xr-x root/root 0 2012-02-18 15:21 ./ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/share/ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/share/doc/libbio-ruby1.8/ -rw-r--r-- root/root 3338 2012-02-17 14:59 ./usr/share/doc/libbio-ruby1.8/copyright lrwxrwxrwx root/root 0 2012-02-18 15:21 ./usr/share/doc/libbio-ruby1.8/changelog.Debian.gz -> ../ruby-bio/changelog.Debian.gz chroot-autobuild/build/buildd/libbio-ruby_1.4.2-2_all.deb: drwxr-xr-x root/root 0 2012-02-18 15:21 ./ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/share/ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-02-18 15:21 ./usr/share/doc/libbio-ruby/ -rw-r--r-- root/root 3338 2012-02-17 14:59 ./usr/share/doc/libbio-ruby/copyright lrwxrwxrwx root/root 0 2012-02-18 15:21 ./usr/share/doc/libbio-ruby/changelog.Debian.gz -> ../ruby-bio/changelog.Debian.gz ruby-bio_1.4.2-2_i386.changes: Format: 1.8 Date: Fri, 17 Feb 2012 15:22:29 +0100 Source: ruby-bio Binary: ruby-bio libbio-ruby1.8 libbio-ruby Architecture: all Version: 1.4.2-2 Distribution: precise Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Cédric Boutillier Description: libbio-ruby - Transitional package for ruby-bio libbio-ruby1.8 - Transitional package for ruby-bio ruby-bio - Ruby tools for computational molecular biology Closes: 654985 Changes: ruby-bio (1.4.2-2) unstable; urgency=low . * Remove some tests depending on a access to the Internet. Closes: #654985 * Add fix_definition_CutSymbol_in_test_cut_symbol.patch to ensure that Bio::RestrictionEnzyme::CutSymbol is defined * Set to extra the priority of transitional packages * Depends on ruby-libxml instead of libxml-ruby Checksums-Sha1: 381396318f301b8cd5097f6b46417e477ccf0119 807118 ruby-bio_1.4.2-2_all.deb a3e4718c6fb02eeb4e46155de8b9b867e41ebb3e 2296 libbio-ruby1.8_1.4.2-2_all.deb 07e6ce544bfb6d1961da0582dbe65ee26f99112b 2292 libbio-ruby_1.4.2-2_all.deb Checksums-Sha256: 03c2c344954c2085090fbd05fa2c9179ac63fb600e575382d94459a267b610a5 807118 ruby-bio_1.4.2-2_all.deb 3e1e69189ad27892a51cec995c156af5bf84a222e27c837f274845cca3f30b0e 2296 libbio-ruby1.8_1.4.2-2_all.deb da92f2e0e8a2cc0c0e1fd43ddfc3d633a94a74303885cb382473c2f28d5fa8c5 2292 libbio-ruby_1.4.2-2_all.deb Files: 3e498d9fe1de4c9498aa6348f09f2f00 807118 ruby optional ruby-bio_1.4.2-2_all.deb 1c146e55ff566f4e7a6450c3e6cc9d01 2296 oldlibs extra libbio-ruby1.8_1.4.2-2_all.deb 294611db638c1a59c480dcbc2bcae0af 2292 oldlibs extra libbio-ruby_1.4.2-2_all.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/ruby-bio-1.4.2 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge sp groff-base rubygems mime-support librd-ruby1.8 gettext file rubygems1.8 ruby1.9.1 libyaml-0-2 sgml-data libruby1.9.1 devscripts libruby1.8 po-debconf docbook rdtool libcroco3 libxml2 gem2deb libgettextpo0 man-db ruby-libxml intltool-debian python2.7 ruby1.9.1-dev xml-core html2text libsp1c2 gettext-base ruby1.8-dev debhelper sgml-base libunistring0 python libmagic1 libreadline5 libpipeline1 libexpat1 bsdmainutils ruby1.8 docbook-to-man (Reading database ... 19100 files and directories currently installed.) Removing rdtool ... Removing gem2deb ... Removing ruby-libxml ... Removing ruby1.9.1-dev ... Removing ruby1.8-dev ... Removing debhelper ... Removing docbook-to-man ... Removing sp ... Removing librd-ruby1.8 ... Removing file ... Removing rubygems1.8 ... Removing ruby1.9.1 ... Purging configuration files for ruby1.9.1 ... Removing libruby1.9.1 ... Purging configuration files for libruby1.9.1 ... Removing devscripts ... Purging configuration files for devscripts ... Removing po-debconf ... Removing docbook ... Purging configuration files for docbook ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing html2text ... Purging configuration files for html2text ... Removing libsp1c2 ... Purging configuration files for libsp1c2 ... Removing python ... Purging configuration files for python ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing groff-base ... Purging configuration files for groff-base ... Removing rubygems ... Purging configuration files for rubygems ... Removing gettext ... Removing libyaml-0-2 ... Purging configuration files for libyaml-0-2 ... Removing sgml-data ... Purging configuration files for sgml-data ... Removing libgettextpo0 ... Removing python2.7 ... Purging configuration files for python2.7 ... Removing xml-core ... Purging configuration files for xml-core ... dpkg: warning: while removing xml-core, directory '/etc/sgml' not empty so not removed. Removing gettext-base ... Removing sgml-base ... Purging configuration files for sgml-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing ruby1.8 ... Purging configuration files for ruby1.8 ... Removing mime-support ... Purging configuration files for mime-support ... Removing libruby1.8 ... Purging configuration files for libruby1.8 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing libreadline5 ... Purging configuration files for libreadline5 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20120218-1522 Build needed 00:02:32, 12700k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '8741f5b684c250a9ed263b463a7ad5fbe9ae4703'] Scanning for processes to kill in build /home/buildd/build-8741f5b684c250a9ed263b463a7ad5fbe9ae4703/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '8741f5b684c250a9ed263b463a7ad5fbe9ae4703'] Unmounting chroot for build 8741f5b684c250a9ed263b463a7ad5fbe9ae4703... none /home/buildd/build-8741f5b684c250a9ed263b463a7ad5fbe9ae4703/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-8741f5b684c250a9ed263b463a7ad5fbe9ae4703/chroot-autobuild/dev/pts devpts rw,relatime 0 0 none /home/buildd/build-8741f5b684c250a9ed263b463a7ad5fbe9ae4703/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-8741f5b684c250a9ed263b463a7ad5fbe9ae4703/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '8741f5b684c250a9ed263b463a7ad5fbe9ae4703'] Removing build 8741f5b684c250a9ed263b463a7ad5fbe9ae4703