ruby-crb-blast 0.6.9-2 source package in Ubuntu
Changelog
ruby-crb-blast (0.6.9-2) unstable; urgency=medium * Run tests with actual number of cores, not 6. (Closes: 892066) -- Michael R. Crusoe <email address hidden> Fri, 16 Mar 2018 15:09:31 -0700
Upload details
- Uploaded by:
- Debian Ruby Extras Maintainers
- Uploaded to:
- Sid
- Original maintainer:
- Debian Ruby Extras Maintainers
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
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ruby-crb-blast_0.6.9-2.dsc | 2.1 KiB | 9705c499ef7d191e7dd9a67ae5a6bbbbfad4c02def39f02284f6a937478ff303 |
ruby-crb-blast_0.6.9.orig.tar.gz | 36.4 KiB | 08af1561894b06df022485792be28d754d56fc1147ba1aa6c9c16e1aef179725 |
ruby-crb-blast_0.6.9-2.debian.tar.xz | 4.7 KiB | 428fbeeb565c6ceb5e4c5496b19b62fa00e6a415323b320c1dc61df79b7fd44d |
Available diffs
- diff from 0.6.9-1 to 0.6.9-2 (930 bytes)
No changes file available.
Binary packages built by this source
- ruby-crb-blast: Run conditional reciprocal best blast
CRB-BLAST is a novel method for finding orthologs between one set of sequences
and another. This is particularly useful in genome and transcriptome
annotation.
.
CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by
performing BLAST alignments of query->target and target->query. Reciprocal
best BLAST hits are those where the best match for any given query sequence in
the query->target alignment is also the best hit of the match in the reverse
(target->query) alignment.
.
Reciprocal best BLAST is a very conservative way to assign orthologs. The main
innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to
each pairwise alignment by taking into account the overall relatedness of the
two datasets being compared. This is done by fitting a function to the
distribution of alignment e-values over sequence lengths. The function
provides the e-value cutoff for a sequence of given length.