ruby-crb-blast 0.6.9-2 source package in Ubuntu

Changelog

ruby-crb-blast (0.6.9-2) unstable; urgency=medium

  * Run tests with actual number of cores, not 6. (Closes: 892066)

 -- Michael R. Crusoe <email address hidden>  Fri, 16 Mar 2018 15:09:31 -0700

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Uploaded by:
Debian Ruby Extras Maintainers
Uploaded to:
Sid
Original maintainer:
Debian Ruby Extras Maintainers
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

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Builds

Cosmic: [FULLYBUILT] amd64

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ruby-crb-blast_0.6.9-2.dsc 2.1 KiB 9705c499ef7d191e7dd9a67ae5a6bbbbfad4c02def39f02284f6a937478ff303
ruby-crb-blast_0.6.9.orig.tar.gz 36.4 KiB 08af1561894b06df022485792be28d754d56fc1147ba1aa6c9c16e1aef179725
ruby-crb-blast_0.6.9-2.debian.tar.xz 4.7 KiB 428fbeeb565c6ceb5e4c5496b19b62fa00e6a415323b320c1dc61df79b7fd44d

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Binary packages built by this source

ruby-crb-blast: Run conditional reciprocal best blast

 CRB-BLAST is a novel method for finding orthologs between one set of sequences
 and another. This is particularly useful in genome and transcriptome
 annotation.
 .
 CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by
 performing BLAST alignments of query->target and target->query. Reciprocal
 best BLAST hits are those where the best match for any given query sequence in
 the query->target alignment is also the best hit of the match in the reverse
 (target->query) alignment.
 .
 Reciprocal best BLAST is a very conservative way to assign orthologs. The main
 innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to
 each pairwise alignment by taking into account the overall relatedness of the
 two datasets being compared. This is done by fitting a function to the
 distribution of alignment e-values over sequence lengths. The function
 provides the e-value cutoff for a sequence of given length.