salmon 0.7.2+ds1-2 source package in Ubuntu


salmon (0.7.2+ds1-2) unstable; urgency=medium

  * Team upload.
  * Fix FTBFS by fixing parallel test runs.
  * Work towards reproducibility by making sure CXXFLAGS are honored.
    Due to __FILE__ related build path embedding still not reproducible.

 -- Sascha Steinbiss <email address hidden>  Sun, 11 Sep 2016 13:29:19 +0000

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Uploaded by:
Debian Med on 2016-09-11
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Artful release on 2017-04-20 universe misc
Zesty release on 2016-12-13 universe misc


File Size SHA-256 Checksum
salmon_0.7.2+ds1-2.dsc 2.4 KiB 39df6463d92f9ac38ead47915d9b07e9b5abfcdf978bf70666039d72f22c8375
salmon_0.7.2+ds1.orig.tar.xz 924.5 KiB c66266b899de132b5cc140968c8aa2d5e05f9942db5f22cd16620dab7e38591a
salmon_0.7.2+ds1-2.debian.tar.xz 74.5 KiB 21b0cbd247cf14c45cb01b42cbbe5928a595a530ed167d81c8b64d3de730244c

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Binary packages built by this source

salmon: wicked-fast transcript quantification from RNA-seq data

 Salmon is a wicked-fast program to produce a highly-accurate, transcript-level
 quantification estimates from RNA-seq data. Salmon achieves is accuracy and
 speed via a number of different innovations, including the use of lightweight
 alignments (accurate but fast-to-compute proxies for traditional read
 alignments) and massively-parallel stochastic collapsed variational inference.
 The result is a versatile tool that fits nicely into many different pipelines.
 For example, you can choose to make use of the lightweight alignments by
 providing Salmon with raw sequencing reads, or, if it is more convenient, you
 can provide Salmon with regular alignments (e.g. computed with your favorite
 aligner), and it will use the same wicked-fast, state-of-the-art inference
 algorithm to estimate transcript-level abundances for your experiment.

salmon-dbgsym: debug symbols for salmon