https://launchpad.net/ubuntu/+source/sambamba/1.0.1+dfsg-2/+build/28288717 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-089 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 x86_64 Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 3 May 03:42:50 ntpdate[1839]: adjust time server 10.131.248.1 offset 0.000026 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28288717 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-28288717 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28288717 Starting target for build PACKAGEBUILD-28288717 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28288717 'deb http://ftpmaster.internal/ubuntu oracular main universe' 'deb http://ftpmaster.internal/ubuntu oracular-security main universe' 'deb http://ftpmaster.internal/ubuntu oracular-updates main universe' 'deb http://ftpmaster.internal/ubuntu oracular-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28288717 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28288717 Updating target for build PACKAGEBUILD-28288717 Get:1 http://ftpmaster.internal/ubuntu oracular InRelease [64.6 kB] Get:2 http://ftpmaster.internal/ubuntu oracular-security InRelease [64.6 kB] Get:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease [64.6 kB] Get:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 Packages [1401 kB] Get:6 http://ftpmaster.internal/ubuntu oracular/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 Packages [15.3 MB] Get:8 http://ftpmaster.internal/ubuntu oracular/universe Translation-en [5980 kB] Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [200 kB] Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/main Translation-en [72.3 kB] Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [565 kB] Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe Translation-en [235 kB] Fetched 24.5 MB in 3s (9504 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-x86-64-linux-gnu gcc-14-base gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 177 upgraded, 23 newly installed, 14 to remove and 0 not upgraded. Need to get 121 MB of archives. After this operation, 78.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libtirpc-common all 1.3.4+ds-1.3 [8106 B] Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libnsl-dev amd64 1.3.0-3build3 [70.5 kB] Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libnsl2 amd64 1.3.0-3build3 [41.4 kB] Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.5 kB] Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2 [142 kB] Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2 [347 kB] Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2 [81.7 kB] Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2 [33.5 kB] Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libacl1 amd64 2.3.2-1build1 [16.8 kB] Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libapparmor1 amd64 4.0.0-beta3-0ubuntu3 [49.5 kB] Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libcap-ng0 amd64 0.8.5-1 [15.2 kB] Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libaudit1 amd64 1:3.1.2-2.1build1 [46.9 kB] Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libblkid1 amd64 2.39.3-9ubuntu6 [123 kB] Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libcap2 amd64 1:2.66-5ubuntu2 [30.0 kB] Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libcrypt-dev amd64 1:4.4.36-4build1 [112 kB] Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libcrypt1 amd64 1:4.4.36-4build1 [82.3 kB] Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libgpg-error-l10n all 1.47-3build2 [8064 B] Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libgpg-error0 amd64 1.47-3build2 [70.0 kB] Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcrypt20 amd64 1.10.3-2build1 [532 kB] Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [127 kB] Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libzstd1 amd64 1.5.5+dfsg2-2build1 [299 kB] Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libkmod2 amd64 31+20240202-2ubuntu7 [51.7 kB] Get:25 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 liblz4-1 amd64 1.9.4-2 [62.9 kB] Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu2 [227 kB] Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libselinux1 amd64 3.5-2ubuntu2 [79.6 kB] Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libmount1 amd64 2.39.3-9ubuntu6 [134 kB] Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [734 kB] Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdbm6t64 amd64 1.23-5.1build1 [34.4 kB] Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdbm-compat4t64 amd64 1.23-5.1build1 [6710 B] Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 libperl5.38t64 amd64 5.38.2-3.2build2 [4873 kB] Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 perl amd64 5.38.2-3.2build2 [231 kB] Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 perl-base amd64 5.38.2-3.2build2 [1823 kB] Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 liblocale-gettext-perl amd64 1.07-6ubuntu5 [15.8 kB] Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 libtext-iconv-perl amd64 1.7-8build3 [13.5 kB] Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libtext-charwidth-perl amd64 0.04-11build3 [9358 B] Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnss-nisplus amd64 1.3-5build1 [22.4 kB] Get:40 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnss-nis amd64 3.1-0ubuntu7 [26.5 kB] Get:41 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-dev-bin amd64 2.39-0ubuntu8.1 [20.4 kB] Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu7 [67.4 kB] Get:43 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6-dev amd64 2.39-0ubuntu8.1 [2124 kB] Get:44 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc6 amd64 2.39-0ubuntu8.1 [3265 kB] Get:45 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libc-bin amd64 2.39-0ubuntu8.1 [682 kB] Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 openssl amd64 3.0.13-0ubuntu3 [1002 kB] Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 libsystemd-shared amd64 255.4-1ubuntu8 [2067 kB] Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu4 [266 kB] Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libssl3t64 amd64 3.0.13-0ubuntu3 [1936 kB] Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 systemd-dev all 255.4-1ubuntu8 [104 kB] Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 systemd-sysv amd64 255.4-1ubuntu8 [11.9 kB] Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 systemd amd64 255.4-1ubuntu8 [3471 kB] Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libsystemd0 amd64 255.4-1ubuntu8 [429 kB] Get:54 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libapt-pkg6.0t64 amd64 2.9.2 [987 kB] Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libnettle8t64 amd64 3.9.1-2.2build1 [182 kB] Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libhogweed6t64 amd64 3.9.1-2.2build1 [199 kB] Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu2 [299 kB] Get:58 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libunistring5 amd64 1.2-1 [539 kB] Get:59 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libgnutls30t64 amd64 3.8.3-1.1ubuntu3.1 [998 kB] Get:60 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 apt amd64 2.9.2 [1403 kB] Get:61 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 apt-utils amd64 2.9.2 [223 kB] Get:62 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpam-modules-bin amd64 1.5.3-7ubuntu1 [51.9 kB] Get:63 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpam-modules amd64 1.5.3-7ubuntu1 [284 kB] Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 bzip2 amd64 1.0.8-5.1 [34.5 kB] Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [34.3 kB] Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-14-base amd64 14-20240412-0ubuntu1 [47.6 kB] Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-s1 amd64 14-20240412-0ubuntu1 [78.5 kB] Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++6 amd64 14-20240412-0ubuntu1 [795 kB] Get:69 http://ftpmaster.internal/ubuntu oracular/main amd64 libudev1 amd64 255.4-1ubuntu8 [174 kB] Get:70 http://ftpmaster.internal/ubuntu oracular/main amd64 libxxhash0 amd64 0.8.2-2build1 [24.1 kB] Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu2 [62.8 kB] Get:72 http://ftpmaster.internal/ubuntu oracular/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2ubuntu6 [253 kB] Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 libffi8 amd64 3.4.6-1build1 [24.7 kB] Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 libidn2-0 amd64 2.3.7-2build1 [66.2 kB] Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 libtasn1-6 amd64 4.19.0-3build1 [43.9 kB] Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 libdebconfclient0 amd64 0.271ubuntu3 [11.4 kB] Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 base-passwd amd64 3.6.3build1 [51.1 kB] Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 libassuan0 amd64 2.5.6-1build1 [37.3 kB] Get:79 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libsqlite3-0 amd64 3.45.3-1 [701 kB] Get:80 http://ftpmaster.internal/ubuntu oracular/main amd64 gpg amd64 2.4.4-2ubuntu17 [565 kB] Get:81 http://ftpmaster.internal/ubuntu oracular/main amd64 libreadline8t64 amd64 8.2-4build1 [153 kB] Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 readline-common all 8.2-4build1 [56.5 kB] Get:83 http://ftpmaster.internal/ubuntu oracular/main amd64 libncursesw6 amd64 6.4+20240113-1ubuntu2 [148 kB] Get:84 http://ftpmaster.internal/ubuntu oracular/main amd64 libtinfo6 amd64 6.4+20240113-1ubuntu2 [108 kB] Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 gpg-agent amd64 2.4.4-2ubuntu17 [227 kB] Get:86 http://ftpmaster.internal/ubuntu oracular/main amd64 gpgconf amd64 2.4.4-2ubuntu17 [103 kB] Get:87 http://ftpmaster.internal/ubuntu oracular/main amd64 pinentry-curses amd64 1.2.1-3ubuntu5 [35.2 kB] Get:88 http://ftpmaster.internal/ubuntu oracular/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 libnpth0t64 amd64 1.6-3.1build1 [8378 B] Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 gpgv amd64 2.4.4-2ubuntu17 [157 kB] Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 libseccomp2 amd64 2.5.5-1ubuntu3 [50.3 kB] Get:93 http://ftpmaster.internal/ubuntu oracular/main amd64 debconf-i18n all 1.5.86ubuntu1 [205 kB] Get:94 http://ftpmaster.internal/ubuntu oracular/main amd64 debconf all 1.5.86ubuntu1 [124 kB] Get:95 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpam0g amd64 1.5.3-7ubuntu1 [67.8 kB] Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libargon2-1 amd64 0~20190702+dfsg-4build1 [20.8 kB] Get:97 http://ftpmaster.internal/ubuntu oracular/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu3 [139 kB] Get:98 http://ftpmaster.internal/ubuntu oracular/main amd64 libjson-c5 amd64 0.17-1build1 [35.3 kB] Get:99 http://ftpmaster.internal/ubuntu oracular/main amd64 libuuid1 amd64 2.39.3-9ubuntu6 [35.2 kB] Get:100 http://ftpmaster.internal/ubuntu oracular/main amd64 libfdisk1 amd64 2.39.3-9ubuntu6 [146 kB] Get:101 http://ftpmaster.internal/ubuntu oracular/main amd64 mount amd64 2.39.3-9ubuntu6 [118 kB] Get:102 http://ftpmaster.internal/ubuntu oracular/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu4 [22.8 kB] Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B] Get:104 http://ftpmaster.internal/ubuntu oracular/main amd64 linux-libc-dev amd64 6.8.0-31.31 [1598 kB] Get:105 http://ftpmaster.internal/ubuntu oracular/main amd64 base-files amd64 13.1ubuntu1 [73.8 kB] Get:106 http://ftpmaster.internal/ubuntu oracular/main amd64 debianutils amd64 5.17build1 [89.9 kB] Get:107 http://ftpmaster.internal/ubuntu oracular/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB] Get:108 http://ftpmaster.internal/ubuntu oracular/main amd64 bsdutils amd64 1:2.39.3-9ubuntu6 [95.0 kB] Get:109 http://ftpmaster.internal/ubuntu oracular/main amd64 coreutils amd64 9.4-3ubuntu6 [1412 kB] Get:110 http://ftpmaster.internal/ubuntu oracular/main amd64 tar amd64 1.35+dfsg-3build1 [253 kB] Get:111 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 dpkg amd64 1.22.6ubuntu10 [1283 kB] Get:112 http://ftpmaster.internal/ubuntu oracular/main amd64 dash amd64 0.5.12-6ubuntu5 [89.8 kB] Get:113 http://ftpmaster.internal/ubuntu oracular/main amd64 diffutils amd64 1:3.10-1build1 [177 kB] Get:114 http://ftpmaster.internal/ubuntu oracular/main amd64 findutils amd64 4.9.0-5build1 [298 kB] Get:115 http://ftpmaster.internal/ubuntu oracular/main amd64 grep amd64 3.11-4build1 [162 kB] Get:116 http://ftpmaster.internal/ubuntu oracular/main amd64 gzip amd64 1.12-1ubuntu3 [98.8 kB] Get:117 http://ftpmaster.internal/ubuntu oracular/main amd64 hostname amd64 3.23+nmu2ubuntu2 [11.1 kB] Get:118 http://ftpmaster.internal/ubuntu oracular/main amd64 login amd64 1:4.13+dfsg1-4ubuntu3 [202 kB] Get:119 http://ftpmaster.internal/ubuntu oracular/main amd64 ncurses-bin amd64 6.4+20240113-1ubuntu2 [188 kB] Get:120 http://ftpmaster.internal/ubuntu oracular/main amd64 sed amd64 4.9-2build1 [193 kB] Get:121 http://ftpmaster.internal/ubuntu oracular/main amd64 util-linux amd64 2.39.3-9ubuntu6 [1127 kB] Get:122 http://ftpmaster.internal/ubuntu oracular/main amd64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:123 http://ftpmaster.internal/ubuntu oracular/main amd64 sysvinit-utils amd64 3.08-6ubuntu3 [34.2 kB] Get:124 http://ftpmaster.internal/ubuntu oracular/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu4 [22.5 kB] Get:125 http://ftpmaster.internal/ubuntu oracular/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu4 [222 kB] Get:126 http://ftpmaster.internal/ubuntu oracular/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu4 [601 kB] Get:127 http://ftpmaster.internal/ubuntu oracular/main amd64 optipng amd64 0.7.8+ds-1build2 [110 kB] Get:128 http://ftpmaster.internal/ubuntu oracular/main amd64 libpng16-16t64 amd64 1.6.43-5build1 [187 kB] Get:129 http://ftpmaster.internal/ubuntu oracular/main amd64 init amd64 1.66ubuntu1 [6186 B] Get:130 http://ftpmaster.internal/ubuntu oracular/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu6 [64.8 kB] Get:131 http://ftpmaster.internal/ubuntu oracular/main amd64 uuid-runtime amd64 2.39.3-9ubuntu6 [33.1 kB] Get:132 http://ftpmaster.internal/ubuntu oracular/main amd64 libattr1 amd64 1:2.5.2-1build1 [11.3 kB] Get:133 http://ftpmaster.internal/ubuntu oracular/main amd64 libmd0 amd64 1.1.0-2build1 [27.0 kB] Get:134 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libpam-runtime all 1.5.3-7ubuntu1 [40.8 kB] Get:135 http://ftpmaster.internal/ubuntu oracular/main amd64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:136 http://ftpmaster.internal/ubuntu oracular/main amd64 libsepol2 amd64 3.5-2build1 [303 kB] Get:137 http://ftpmaster.internal/ubuntu oracular/main amd64 libsemanage2 amd64 3.5-1build5 [93.2 kB] Get:138 http://ftpmaster.internal/ubuntu oracular/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu3 [845 kB] Get:139 http://ftpmaster.internal/ubuntu oracular/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu3 [59.1 kB] Get:140 http://ftpmaster.internal/ubuntu oracular/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu4 [17.0 kB] Get:141 http://ftpmaster.internal/ubuntu oracular/main amd64 mawk amd64 1.3.4.20240123-1build1 [127 kB] Get:142 http://ftpmaster.internal/ubuntu oracular/main amd64 procps amd64 2:4.0.4-4ubuntu3 [708 kB] Get:143 http://ftpmaster.internal/ubuntu oracular/main amd64 sensible-utils all 0.0.22 [22.5 kB] Get:144 http://ftpmaster.internal/ubuntu oracular/main amd64 ca-certificates all 20240203 [159 kB] Get:145 http://ftpmaster.internal/ubuntu oracular/main amd64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:146 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 tzdata all 2024a-4ubuntu1 [274 kB] Get:147 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 bash-completion all 1:2.12.0-1 [204 kB] Get:148 http://ftpmaster.internal/ubuntu oracular/main amd64 bsdextrautils amd64 2.39.3-9ubuntu6 [73.8 kB] Get:149 http://ftpmaster.internal/ubuntu oracular/main amd64 libgpm2 amd64 1.20.7-11 [14.1 kB] Get:150 http://ftpmaster.internal/ubuntu oracular/main amd64 libip4tc2 amd64 1.8.10-3ubuntu2 [23.3 kB] Get:151 http://ftpmaster.internal/ubuntu oracular/main amd64 libjansson4 amd64 2.14-2build2 [32.8 kB] Get:152 http://ftpmaster.internal/ubuntu oracular/main amd64 psmisc amd64 23.7-1build1 [179 kB] Get:153 http://ftpmaster.internal/ubuntu oracular/main amd64 xz-utils amd64 5.6.1+really5.4.5-1 [267 kB] Get:154 http://ftpmaster.internal/ubuntu oracular/main amd64 advancecomp amd64 2.5-1build1 [182 kB] Get:155 http://ftpmaster.internal/ubuntu oracular/main amd64 libgprofng0 amd64 2.42-4ubuntu2 [851 kB] Get:156 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf0 amd64 2.42-4ubuntu2 [94.5 kB] Get:157 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu2 [97.1 kB] Get:158 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu2 [2469 kB] Get:159 http://ftpmaster.internal/ubuntu oracular/main amd64 libbinutils amd64 2.42-4ubuntu2 [572 kB] Get:160 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils amd64 2.42-4ubuntu2 [18.0 kB] Get:161 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-common amd64 2.42-4ubuntu2 [239 kB] Get:162 http://ftpmaster.internal/ubuntu oracular/main amd64 libsframe1 amd64 2.42-4ubuntu2 [14.8 kB] Get:163 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14-20240412-0ubuntu1 [1175 kB] Get:164 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB] Get:165 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB] Get:166 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14-20240412-0ubuntu1 [147 kB] Get:167 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14-20240412-0ubuntu1 [28.9 kB] Get:168 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14-20240412-0ubuntu1 [10.4 kB] Get:169 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14-20240412-0ubuntu1 [3024 kB] Get:170 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14-20240412-0ubuntu1 [1313 kB] Get:171 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14-20240412-0ubuntu1 [1632 kB] Get:172 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14-20240412-0ubuntu1 [153 kB] Get:173 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB] Get:174 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB] Get:175 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14-20240412-0ubuntu1 [2736 kB] Get:176 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14-20240412-0ubuntu1 [47.7 kB] Get:177 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B] Get:178 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB] Get:179 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB] Get:180 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpfr6 amd64 4.2.1-1build1 [355 kB] Get:181 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] Get:182 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB] Get:183 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB] Get:184 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB] Get:185 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] Get:186 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] Get:187 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] Get:188 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] Get:189 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] Get:190 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] Get:191 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 dpkg-dev all 1.22.6ubuntu10 [1074 kB] Get:192 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libdpkg-perl all 1.22.6ubuntu10 [269 kB] Get:193 http://ftpmaster.internal/ubuntu oracular/main amd64 patch amd64 2.7.6-7build3 [104 kB] Get:194 http://ftpmaster.internal/ubuntu oracular/main amd64 make amd64 4.3-4.1build2 [180 kB] Get:195 http://ftpmaster.internal/ubuntu oracular/main amd64 lto-disabled-list all 47 [12.4 kB] Get:196 http://ftpmaster.internal/ubuntu oracular/main amd64 libfakeroot amd64 1.34-1 [32.4 kB] Get:197 http://ftpmaster.internal/ubuntu oracular/main amd64 fakeroot amd64 1.34-1 [67.2 kB] Get:198 http://ftpmaster.internal/ubuntu oracular/main amd64 liblockfile-bin amd64 1.17-1build3 [11.2 kB] Get:199 http://ftpmaster.internal/ubuntu oracular/main amd64 liblockfile1 amd64 1.17-1build3 [6840 B] Get:200 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 lockfile-progs amd64 0.1.19+nmu1 [8854 B] Preconfiguring packages ... 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Setting up liblsan0:amd64 (14-20240412-0ubuntu1) ... Setting up libitm1:amd64 (14-20240412-0ubuntu1) ... Setting up libctf0:amd64 (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... Setting up debconf-i18n (1.5.86ubuntu1) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up libgprofng0:amd64 (2.42-4ubuntu2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19+nmu1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu10) ... Setting up libreadline8t64:amd64 (8.2-4build1) ... Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:amd64 (2.39-0ubuntu8.1) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... Setting up binutils-x86-64-linux-gnu (2.42-4ubuntu2) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-23ubuntu4) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... Setting up binutils (2.42-4ubuntu2) ... Setting up dpkg-dev (1.22.6ubuntu10) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... Setting up gcc-13 (13.2.0-23ubuntu4) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:amd64 (1.3.0-3build3) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libnss-nisplus:amd64 (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up libnss-nis:amd64 (3.1-0ubuntu7) ... Setting up libnsl-dev:amd64 (1.3.0-3build3) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-23ubuntu4) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Processing triggers for libc-bin (2.39-0ubuntu8.1) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15995 files and directories currently installed.) Purging configuration files for libssl3:amd64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28288717 amd64 oracular-proposed -c chroot:build-PACKAGEBUILD-28288717 --arch=amd64 --dist=oracular-proposed --nolog -A sambamba_1.0.1+dfsg-2.dsc Initiating build PACKAGEBUILD-28288717 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-089.buildd +==============================================================================+ | sambamba 1.0.1+dfsg-2 (amd64) Fri, 03 May 2024 03:43:20 +0000 | +==============================================================================+ Package: sambamba Version: 1.0.1+dfsg-2 Source Version: 1.0.1+dfsg-2 Distribution: oracular-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28288717/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/sambamba-GEic6l/resolver-FE0bHV' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- sambamba_1.0.1+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/sambamba-GEic6l/sambamba-1.0.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/sambamba-GEic6l' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-dlang, libhts-dev, meson, pkgconf, python3, shunit2, zlib1g-dev, ldc, liblz4-dev, libcurl4-gnutls-dev | libcurl-dev, libssl-dev, libbz2-dev, libdeflate-dev, liblzma-dev, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-dlang, libhts-dev, meson, pkgconf, python3, shunit2, zlib1g-dev, ldc, liblz4-dev, libcurl4-gnutls-dev | libcurl-dev, libssl-dev, libbz2-dev, libdeflate-dev, liblzma-dev, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [488 B] Get:5 copy:/<>/apt_archive ./ Packages [566 B] Fetched 2011 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: architecture-properties autoconf automake autopoint autotools-dev debhelper debugedit default-d-compiler dh-autoreconf dh-dlang dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian ldc libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev libcurl3t64-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libedit2 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libhts-dev libhts3t64 libhtscodecs2 libicu74 libldap2 libllvm17t64 liblz4-dev liblzma-dev libmagic-mgc libmagic1t64 libnghttp2-14 libphobos2-ldc-shared-dev libphobos2-ldc-shared106 libpipeline1 libpkgconf3 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types meson netbase ninja-build pkgconf pkgconf-bin po-debconf python3 python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-minimal shunit2 zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev liblzma-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.12-venv python3.12-doc binfmt-support Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: architecture-properties autoconf automake autopoint autotools-dev debhelper debugedit default-d-compiler dh-autoreconf dh-dlang dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian ldc libarchive-zip-perl libbrotli1 libbsd0 libbz2-dev libcurl3t64-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libedit2 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libhts-dev libhts3t64 libhtscodecs2 libicu74 libldap2 libllvm17t64 liblz4-dev liblzma-dev libmagic-mgc libmagic1t64 libnghttp2-14 libphobos2-ldc-shared-dev libphobos2-ldc-shared106 libpipeline1 libpkgconf3 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types meson netbase ninja-build pkgconf pkgconf-bin po-debconf python3 python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-minimal sbuild-build-depends-main-dummy shunit2 zlib1g-dev 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 77.2 MB of archives. After this operation, 342 MB of additional disk space will be used. 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Processing triggers for libc-bin (2.39-0ubuntu8.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 amd64 (x86_64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu10 g++-13_13.2.0-23ubuntu4 gcc-13_13.2.0-23ubuntu4 libc6-dev_2.39-0ubuntu8.1 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 linux-libc-dev_6.8.0-31.31 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.9.2 apt-utils_2.9.2 architecture-properties_0.1.1 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13.1ubuntu1 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.12.0-1 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-x86-64-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu4 cpp-13-x86-64-linux-gnu_13.2.0-23ubuntu4 cpp-x86-64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 default-d-compiler_0.6.6 dh-autoreconf_20 dh-dlang_0.6.6 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu10 dpkg-dev_1.22.6ubuntu10 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.34-1 file_1:5.45-3build1 findutils_4.9.0-5build1 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu4 g++-13-x86-64-linux-gnu_13.2.0-23ubuntu4 g++-x86-64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-23ubuntu4 gcc-13-base_13.2.0-23ubuntu4 gcc-13-x86-64-linux-gnu_13.2.0-23ubuntu4 gcc-14-base_14-20240412-0ubuntu1 gcc-x86-64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-4 gzip_1.12-1ubuntu3 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 ldc_1:1.36.0-2ubuntu2 libacl1_2.3.2-1build1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.9.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4build1 libasan8_14-20240412-0ubuntu1 libassuan0_2.5.6-1build1 libatomic1_14-20240412-0ubuntu1 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu6 libbrotli1_1.1.0-2build2 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libbz2-dev_1.0.8-5.1 libc-bin_2.39-0ubuntu8.1 libc-dev-bin_2.39-0ubuntu8.1 libc6_2.39-0ubuntu8.1 libc6-dev_2.39-0ubuntu8.1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5ubuntu2 libcc1-0_14-20240412-0ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libcurl3t64-gnutls_8.5.0-2ubuntu10.1 libcurl4-gnutls-dev_8.5.0-2ubuntu10.1 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdeflate-dev_1.20-1 libdeflate0_1.20-1 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu10 libdw1t64_0.191-1 libedit2_3.1-20230828-1build1 libelf1t64_0.191-1 libexpat1_2.6.2-1 libext2fs2t64_1.47.0-2.4~exp1ubuntu4 libfakeroot_1.34-1 libfdisk1_2.39.3-9ubuntu6 libffi8_3.4.6-1build1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-23ubuntu4 libgcc-s1_14-20240412-0ubuntu1 libgcrypt20_1.10.3-2build1 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgmp10_2:6.3.0+dfsg-2ubuntu6 libgnutls30t64_3.8.3-1.1ubuntu3.1 libgomp1_14-20240412-0ubuntu1 libgpg-error-l10n_1.47-3build2 libgpg-error0_1.47-3build2 libgpm2_1.20.7-11 libgprofng0_2.42-4ubuntu2 libgssapi-krb5-2_1.20.1-6ubuntu2 libhogweed6t64_3.9.1-2.2build1 libhts-dev_1.19+ds-1.1build3 libhts3t64_1.19+ds-1.1build3 libhtscodecs2_1.6.0-1build1 libhwasan0_14-20240412-0ubuntu1 libicu74_74.2-1ubuntu3 libidn2-0_2.3.7-2build1 libip4tc2_1.8.10-3ubuntu2 libisl23_0.26-3build1 libitm1_14-20240412-0ubuntu1 libjansson4_2.14-2build2 libjson-c5_0.17-1build1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3build1 libkmod2_31+20240202-2ubuntu7 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 libldap2_2.6.7+dfsg-1~exp1ubuntu8 libllvm17t64_1:17.0.6-11 liblocale-gettext-perl_1.07-6ubuntu5 liblockfile-bin_1.17-1build3 liblockfile1_1.17-1build3 liblsan0_14-20240412-0ubuntu1 liblz4-1_1.9.4-2 liblz4-dev_1.9.4-2 liblzma-dev_5.6.1+really5.4.5-1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmd0_1.1.0-2build1 libmount1_2.39.3-9ubuntu6 libmpc3_1.3.1-1build1 libmpfr6_4.2.1-1build1 libncursesw6_6.4+20240113-1ubuntu2 libnettle8t64_3.9.1-2.2build1 libnghttp2-14_1.61.0-1 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu7 libnss-nisplus_1.3-5build1 libp11-kit0_0.25.3-4ubuntu2 libpam-modules_1.5.3-7ubuntu1 libpam-modules-bin_1.5.3-7ubuntu1 libpam-runtime_1.5.3-7ubuntu1 libpam0g_1.5.3-7ubuntu1 libpcre2-8-0_10.42-4ubuntu2 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2build2 libphobos2-ldc-shared-dev_1:1.36.0-2ubuntu2 libphobos2-ldc-shared106_1:1.36.0-2ubuntu2 libpipeline1_1.5.7-2 libpkgconf3_1.8.1-2build1 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libpsl5t64_0.21.2-1.1build1 libpython3-stdlib_3.12.3-0ubuntu1 libpython3.12-minimal_3.12.3-1 libpython3.12-stdlib_3.12.3-1 libquadmath0_14-20240412-0ubuntu1 libreadline8t64_8.2-4build1 librtmp1_2.4+20151223.gitfa8646d.1-2build7 libsasl2-2_2.1.28+dfsg1-5ubuntu3 libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libsframe1_2.42-4ubuntu2 libsmartcols1_2.39.3-9ubuntu6 libsqlite3-0_3.45.3-1 libss2_1.47.0-2.4~exp1ubuntu4 libssh-4_0.10.6-2build2 libssl-dev_3.0.13-0ubuntu3 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu8 libsystemd0_255.4-1ubuntu8 libtasn1-6_4.19.0-3build1 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1ubuntu2 libtirpc-common_1.3.4+ds-1.3 libtirpc-dev_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3 libtool_2.4.7-7build1 libtsan2_14-20240412-0ubuntu1 libubsan1_14-20240412-0ubuntu1 libuchardet0_0.0.8-1build1 libudev1_255.4-1ubuntu8 libunistring2_1.0-2 libunistring5_1.2-1 libuuid1_2.39.3-9ubuntu6 libxml2_2.9.14+dfsg-1.3ubuntu3 libxxhash0_0.8.2-2build1 libzstd1_1.5.5+dfsg2-2build1 linux-libc-dev_6.8.0-31.31 lockfile-progs_0.1.19+nmu1 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_47 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.1-1 mawk_1.3.4.20240123-1build1 media-types_10.1.0 meson_1.3.2-1ubuntu1 mount_2.39.3-9ubuntu6 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 netbase_6.4 ninja-build_1.11.1-2 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkgbinarymangler_154 pkgconf_1.8.1-2build1 pkgconf-bin_1.8.1-2build1 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 python3_3.12.3-0ubuntu1 python3-minimal_3.12.3-0ubuntu1 python3-pkg-resources_68.1.2-2ubuntu1 python3-setuptools_68.1.2-2ubuntu1 python3.12_3.12.3-1 python3.12-minimal_3.12.3-1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 shunit2_2.1.8-4 systemd_255.4-1ubuntu8 systemd-dev_255.4-1ubuntu8 systemd-sysv_255.4-1ubuntu8 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-4ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sambamba Binary: sambamba Architecture: any Version: 1.0.1+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/lomereiter/sambamba Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/sambamba Vcs-Git: https://salsa.debian.org/med-team/sambamba.git Testsuite: autopkgtest Testsuite-Triggers: shunit2 Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-dlang, libhts-dev, meson, pkgconf, python3, shunit2 , zlib1g-dev, ldc, liblz4-dev, libcurl4-gnutls-dev | libcurl-dev, libssl-dev, libbz2-dev, libdeflate-dev, liblzma-dev, debhelper Package-List: sambamba deb science optional arch=any Checksums-Sha1: e2068bbb9952d50826d3f3b1722a6504b8d0e971 563480 sambamba_1.0.1+dfsg.orig.tar.xz 316c001f3207c3f74f7223fa9d41fc2390abf4cf 6928 sambamba_1.0.1+dfsg-2.debian.tar.xz Checksums-Sha256: 98a9f16d7f8ade548877864c157a4386341f8dc470dcabc9453674f5370e8acc 563480 sambamba_1.0.1+dfsg.orig.tar.xz d3c6c266c79e598fe17753baeea294f2c56e2623fe7758f92c789e5ec6966ca4 6928 sambamba_1.0.1+dfsg-2.debian.tar.xz Files: 8bed93884239b8dd5955739fcd15695c 563480 sambamba_1.0.1+dfsg.orig.tar.xz ddc7a8998e54cedf55b0ad7de4fbf8aa 6928 sambamba_1.0.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmYewYMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHUpg/+Nt1iiW0Nry2Ss4+eWZbgixijh5ZF99rQ idQSNeUiZBYdxRTtgcsPkRQsvavtx1bOqGdD+1bn347z1bqBxBVVsWrsAl0swI/8 Uv6/I+xMy/5BT0rvVZqfKDGGTXfn1Gn/FqFRk/ORVbKN7V6/XGbKcbtqWfCa7nC+ LptDSdPqG+JBpzOPR/mdu4NlTumcXB+x2i5tA4sy2fagyzcHCkr0nDhwlduHUXqr zCx+ywA9eql7GTtfqMnm8udsZg/DZi3nTXgmvmy07BJ5XKZm/60kGCp4SmExqenp /xhgX622fZsCmTteVy7AuKcuHXSrM8EGtiayF8LHtsyVUaXsJTkccjahNjBWeWH+ kP0bhTsCS3iXqWbz0gSR0JD/voVPjxMuhYbQNKIh1OEMqp9RPW5LXh2DqOwC2NRv VsNmM3JLbr7axDSplvbOS+4smBcEqfbnyD8kudAoVT9kq44zEIm7m2HgTn7ss43p Rr0t9xEjSEhK1Qhi7/nTUOENvtBf6h50Q4y2++5e23bV6hFQOXYVj6LPOKLAZraU NyecCx07VOxAfwvItQQdjb/PJda6wMv6TvGtc78sRBoyt+7MLQSMEgi4iEF9VbGF c35qV1v+J4MaBM2ewwU9fYDxu8/AqOlOxY59FjBvo3upJywkBhfzY0/AfTAeBxEX mGkQDU8Ce0A= =fg64 -----END PGP SIGNATURE----- gpgv: Signature made Tue Apr 16 18:20:51 2024 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sambamba_1.0.1+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting sambamba in /<> dpkg-source: info: unpacking sambamba_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sambamba_1.0.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28288717 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28288717 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28288717 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package sambamba dpkg-buildpackage: info: source version 1.0.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean mkdir -p obj-x86_64-linux-gnu dh clean --buildsystem=meson debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -rf /<>/output/ rm -f test.log make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary mkdir -p obj-x86_64-linux-gnu dh binary --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -Doptimize_strong=true -Dcpp_link_args="-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Dpython.bytecompile=-1 -Doptimize_strong=true "-Dcpp_link_args=-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" The Meson build system Version: 1.3.2 Source dir: /<> Build dir: /<>/obj-x86_64-linux-gnu Build type: native build Project name: Sambamba Project version: 1.0.1 C compiler for the host machine: cc (gcc 13.2.0 "cc (Ubuntu 13.2.0-23ubuntu4) 13.2.0") C linker for the host machine: cc ld.bfd 2.42 D compiler for the host machine: ldc2 (llvm 1.36.0 "LDC - the LLVM D compiler (1.36.0):") D linker for the host machine: ldc2 ld.bfd 2.42 Host machine cpu family: x86_64 Host machine cpu: x86_64 Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency liblz4 found: YES 1.9.4 Run-time dependency zlib found: YES 1.3 Program ldc2 found: YES (/usr/bin/ldc2) Program mkdir found: YES (/usr/bin/mkdir) WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in future releases of meson. See also: https://github.com/mesonbuild/meson/issues/9300 Program /<>/test/test_suite.sh found: YES (/<>/test/test_suite.sh) Build targets in project: 1 Sambamba 1.0.1 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir : /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload python.bytecompile: -1 cpp_link_args : -wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4 optimize_strong : true Found ninja-1.11.1 at /usr/bin/ninja make[1]: Leaving directory '/<>' dh_auto_build -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j4 -v [1/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_main.d.o.deps -of=sambamba.p/sambamba_main.d.o -c ../sambamba/main.d [2/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_fixbins.d.o.deps -of=sambamba.p/sambamba_fixbins.d.o -c ../sambamba/fixbins.d [3/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_index.d.o.deps -of=sambamba.p/sambamba_index.d.o -c ../sambamba/index.d [4/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup2.d.o.deps -of=sambamba.p/sambamba_markdup2.d.o -c ../sambamba/markdup2.d [5/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_flagstat.d.o.deps -of=sambamba.p/sambamba_flagstat.d.o -c ../sambamba/flagstat.d [6/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_merge.d.o.deps -of=sambamba.p/sambamba_merge.d.o -c ../sambamba/merge.d [7/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_depth.d.o.deps -of=sambamba.p/sambamba_depth.d.o -c ../sambamba/depth.d [8/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_slice.d.o.deps -of=sambamba.p/sambamba_slice.d.o -c ../sambamba/slice.d [9/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup.d.o.deps -of=sambamba.p/sambamba_markdup.d.o -c ../sambamba/markdup.d [10/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_subsample.d.o.deps -of=sambamba.p/sambamba_subsample.d.o -c ../sambamba/subsample.d [11/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_file.d.o.deps 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-I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d [27/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_chunk.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_chunk.d.o -c ../BioD/bio/core/bgzf/chunk.d [28/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_compress.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_compress.d.o -c ../BioD/bio/core/bgzf/compress.d [29/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d [30/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c ../BioD/bio/core/bgzf/inputstream.d [31/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o.deps 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o -c ../BioD/bio/std/experimental/hts/constants.d [58/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d [59/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o -c ../BioD/bio/std/experimental/hts/logger.d [60/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o -c ../BioD/bio/std/experimental/hts/bam/reader.d [61/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o -c ../BioD/bio/std/experimental/hts/bgzf.d ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: package bio.core.utils is not accessible here, perhaps add 'static import bio.core.utils;' ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: module bio.core.utils.zlib is not accessible here, perhaps add 'static import bio.core.utils.zlib;' [62/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d [63/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d [64/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d [65/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d [66/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_maf.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_maf.d.o -c ../BioD/bio/std/genotype/maf.d [67/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d [71/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fai.d.o.deps -of=sambamba.p/BioD_bio_std_file_fai.d.o -c ../BioD/bio/std/file/fai.d [72/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o -c ../BioD/bio/std/hts/bam/baseinfo.d [73/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d [74/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c ../BioD/bio/std/hts/bam/constants.d [75/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_snp.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_snp.d.o -c ../BioD/bio/std/genotype/snp.d [76/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d [77/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d [78/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d [79/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d [80/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d [81/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d [82/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o -c ../BioD/bio/std/hts/bam/md/operation.d [83/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o -c ../BioD/bio/std/hts/bam/randomaccessmanager.d [84/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release 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-I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_region.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_region.d.o -c ../BioD/bio/std/hts/bam/region.d [88/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o -c ../BioD/bio/std/hts/bam/splitter.d [89/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reader.d.o -c ../BioD/bio/std/hts/bam/reader.d [90/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d [91/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d [92/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o -c ../BioD/bio/std/hts/bam/validation/samheader.d [93/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_writer.d.o -c ../BioD/bio/std/hts/bam/writer.d [94/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o -c ../BioD/bio/std/hts/iontorrent/flowindex.d [95/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c ../BioD/bio/std/hts/iontorrent/flowcall.d [96/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_reader.d.o -c ../BioD/bio/std/hts/sam/reader.d [97/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d [98/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d [99/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o -c ../BioD/bio/std/hts/snpcallers/maq.d [100/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d [101/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_array.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_array.d.o -c ../BioD/bio/std/hts/utils/array.d [102/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o -c ../BioD/bio/std/hts/sam/utils/recordparser.d [103/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_graph.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_graph.d.o -c ../BioD/bio/std/hts/utils/graph.d [104/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o -c ../BioD/bio/std/hts/snpcallers/simple.d [105/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_block.d.o.deps -of=sambamba.p/BioD_bio_std_maf_block.d.o -c ../BioD/bio/std/maf/block.d [106/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_value.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d [107/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d [108/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_range_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_range_splitter.d.o -c ../BioD/bio/std/range/splitter.d [109/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_constants.d.o.deps -of=sambamba.p/BioD_bio_std_sff_constants.d.o -c ../BioD/bio/std/sff/constants.d [110/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_index.d.o.deps -of=sambamba.p/BioD_bio_std_sff_index.d.o -c ../BioD/bio/std/sff/index.d [111/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_read.d.o.deps -of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d [112/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d [113/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d [114/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d [115/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d [116/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d [117/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d ../BioD/contrib/undead/doformat.d(128): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/doformat.d(129): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/doformat.d(130): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/doformat.d(131): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(132): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(133): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead [118/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d [119/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d [120/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d [121/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_internal_file.d.o.deps -of=sambamba.p/BioD_contrib_undead_internal_file.d.o -c ../BioD/contrib/undead/internal/file.d [122/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_lz4.d.o.deps -of=sambamba.p/utils_lz4.d.o -c ../utils/lz4.d [123/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d [124/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d [125/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_version_.d.o.deps -of=sambamba.p/utils_version_.d.o -c ../utils/version_.d [126/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/attribute.d [127/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_unstablesort.d.o.deps -of=sambamba.p/thirdparty_unstablesort.d.o -c ../thirdparty/unstablesort.d [128/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/common.d [129/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/package.d [130/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/register.d [131/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/buffer.d [132/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/exception.d [133/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/packer.d [134/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/streaming_unpacker.d [135/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d ../BioD/contrib/undead/stream.d(450): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(451): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(452): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(453): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(454): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(455): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(1116): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(1117): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(1118): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(1119): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(1120): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(1121): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(494): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2472): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(2473): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(2474): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(2475): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(2476): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(2477): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2527): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(2528): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(2529): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(2530): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(2531): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(2532): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead [136/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o -c ../BioD/bio/std/hts/utils/samheadermerger.d [137/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/_build_sambamba-GEic6l_sambamba-1.0.1+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o.deps -of=sambamba.p/_build_sambamba-GEic6l_sambamba-1.0.1+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o -c /<>/obj-x86_64-linux-gnu/utils/ldc_version_info_.d [138/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/value.d [139/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -O -g -release -wi -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/unpacker.d [140/140] ldc2 -of=sambamba sambamba.p/sambamba_main.d.o sambamba.p/sambamba_depth.d.o sambamba.p/sambamba_fixbins.d.o sambamba.p/sambamba_flagstat.d.o sambamba.p/sambamba_index.d.o sambamba.p/sambamba_markdup2.d.o sambamba.p/sambamba_markdup.d.o sambamba.p/sambamba_merge.d.o sambamba.p/sambamba_pileup.d.o sambamba.p/sambamba_slice.d.o sambamba.p/sambamba_sort.d.o sambamba.p/sambamba_subsample.d.o sambamba.p/sambamba_utils_common_bed.d.o sambamba.p/sambamba_utils_common_file.d.o sambamba.p/sambamba_utils_common_filtering.d.o sambamba.p/sambamba_utils_common_intervaltree.d.o sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o sambamba.p/sambamba_utils_common_overwrite.d.o sambamba.p/sambamba_utils_common_pratt_parser.d.o sambamba.p/sambamba_utils_common_progressbar.d.o sambamba.p/sambamba_utils_common_queryparser.d.o sambamba.p/sambamba_utils_common_readstorage.d.o sambamba.p/sambamba_utils_common_tmpdir.d.o sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o sambamba.p/sambamba_utils_view_headerserializer.d.o sambamba.p/sambamba_validate.d.o sambamba.p/sambamba_view.d.o sambamba.p/BioD_bio_core_base.d.o sambamba.p/BioD_bio_core_bgzf_block.d.o sambamba.p/BioD_bio_core_bgzf_chunk.d.o sambamba.p/BioD_bio_core_bgzf_compress.d.o sambamba.p/BioD_bio_core_bgzf_constants.d.o sambamba.p/BioD_bio_core_bgzf_inputstream.d.o sambamba.p/BioD_bio_core_bgzf_outputstream.d.o sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o sambamba.p/BioD_bio_core_call.d.o sambamba.p/BioD_bio_core_decompress.d.o sambamba.p/BioD_bio_core_genotype.d.o sambamba.p/BioD_bio_core_kmer.d.o sambamba.p/BioD_bio_core_region.d.o sambamba.p/BioD_bio_core_sequence.d.o sambamba.p/BioD_bio_core_tinymap.d.o sambamba.p/BioD_bio_core_utils_algo.d.o sambamba.p/BioD_bio_core_utils_bylinefast.d.o sambamba.p/BioD_bio_core_utils_exception.d.o sambamba.p/BioD_bio_core_utils_format.d.o sambamba.p/BioD_bio_core_utils_memoize.d.o sambamba.p/BioD_bio_core_utils_outbuffer.d.o sambamba.p/BioD_bio_core_utils_range.d.o sambamba.p/BioD_bio_core_utils_roundbuf.d.o sambamba.p/BioD_bio_core_utils_stream.d.o sambamba.p/BioD_bio_core_utils_switchendianness.d.o sambamba.p/BioD_bio_core_utils_tmpfile.d.o sambamba.p/BioD_bio_core_utils_zlib.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_constants.d.o sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o sambamba.p/BioD_bio_std_experimental_hts_logger.d.o sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o sambamba.p/BioD_bio_std_experimental_hts_reads.d.o sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o sambamba.p/BioD_bio_std_file_fai.d.o sambamba.p/BioD_bio_std_file_fasta.d.o sambamba.p/BioD_bio_std_file_fastq.d.o sambamba.p/BioD_bio_std_genotype_maf.d.o sambamba.p/BioD_bio_std_genotype_snp.d.o sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o sambamba.p/BioD_bio_std_hts_bam_baifile.d.o sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o sambamba.p/BioD_bio_std_hts_bam_cigar.d.o sambamba.p/BioD_bio_std_hts_bam_constants.d.o sambamba.p/BioD_bio_std_hts_bam_md_core.d.o sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o sambamba.p/BioD_bio_std_hts_bam_multireader.d.o sambamba.p/BioD_bio_std_hts_bam_pileup.d.o sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o sambamba.p/BioD_bio_std_hts_bam_read.d.o sambamba.p/BioD_bio_std_hts_bam_reader.d.o sambamba.p/BioD_bio_std_hts_bam_readrange.d.o sambamba.p/BioD_bio_std_hts_bam_reference.d.o sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o sambamba.p/BioD_bio_std_hts_bam_region.d.o sambamba.p/BioD_bio_std_hts_bam_splitter.d.o sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o sambamba.p/BioD_bio_std_hts_bam_writer.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o sambamba.p/BioD_bio_std_hts_sam_header.d.o sambamba.p/BioD_bio_std_hts_sam_reader.d.o sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o sambamba.p/BioD_bio_std_hts_utils_array.d.o sambamba.p/BioD_bio_std_hts_utils_graph.d.o sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o sambamba.p/BioD_bio_std_hts_utils_value.d.o sambamba.p/BioD_bio_std_maf_block.d.o sambamba.p/BioD_bio_std_maf_parser.d.o sambamba.p/BioD_bio_std_maf_reader.d.o sambamba.p/BioD_bio_std_range_splitter.d.o sambamba.p/BioD_bio_std_sff_constants.d.o sambamba.p/BioD_bio_std_sff_index.d.o sambamba.p/BioD_bio_std_sff_read.d.o sambamba.p/BioD_bio_std_sff_reader.d.o sambamba.p/BioD_bio_std_sff_readrange.d.o sambamba.p/BioD_bio_std_sff_utils_roundup.d.o sambamba.p/BioD_bio_std_sff_writer.d.o sambamba.p/BioD_contrib_undead_cstream.d.o sambamba.p/BioD_contrib_undead_doformat.d.o sambamba.p/BioD_contrib_undead_internal_file.d.o sambamba.p/BioD_contrib_undead_stream.d.o sambamba.p/BioD_contrib_undead_utf.d.o sambamba.p/utils_lz4.d.o sambamba.p/utils_strip_bcf_header.d.o sambamba.p/utils_version_.d.o sambamba.p/thirdparty_mergesort.d.o sambamba.p/thirdparty_unstablesort.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o sambamba.p/_build_sambamba-GEic6l_sambamba-1.0.1+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o -L=-flto=full -L=-rpath -L=/usr/lib/x86_64-linux-gnu -L=-rpath-link -L=/usr/lib/x86_64-linux-gnu -L=--allow-shlib-undefined -link-defaultlib-shared -L=-Bsymbolic-functions -L=-z -L=relro -O -g -release -wi /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/liblz4.so debian/rules override_dh_auto_test make[1]: Entering directory '/<>' echo "FIXME: Build time tests needs fixing" FIXME: Build time tests needs fixing make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install --destdir=debian/sambamba/ -O--buildsystem=meson cd obj-x86_64-linux-gnu && DESTDIR=/<>/sambamba-1.0.1\+dfsg/debian/sambamba LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing sambamba to /<>/debian/sambamba/usr/bin Installing /<>/man/sambamba.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/man/sambamba-flagstat.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/man/sambamba-index.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/man/sambamba-markdup.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/man/sambamba-merge.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/man/sambamba-pileup.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/man/sambamba-slice.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/man/sambamba-sort.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/man/sambamba-view.1 to /<>/debian/sambamba/usr/share/man/man1 Installing /<>/etc/bash_completion.d/sambamba to /<>/debian/sambamba/usr/share/bash-completion/completions dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installman -O--buildsystem=meson dh_installsystemduser -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson debian/rules override_dh_missing make[1]: Entering directory '/<>' dh_missing --fail-missing make[1]: Leaving directory '/<>' dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson b9799ab491abd07ee4e7d8d8c2340d7dbdce953a dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing sambamba (in debian/sambamba); do_strip: , oemstrip: pkgstriptranslations: processing sambamba-dbgsym (in debian/.debhelper/sambamba/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/sambamba/DEBIAN/control, package sambamba, directory debian/sambamba pkgstripfiles: processing control file: debian/.debhelper/sambamba/dbgsym-root/DEBIAN/control, package sambamba-dbgsym, directory debian/.debhelper/sambamba/dbgsym-root dpkg-deb: building package 'sambamba-dbgsym' in 'debian/.debhelper/scratch-space/build-sambamba/sambamba-dbgsym_1.0.1+dfsg-2_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package sambamba ... pkgstripfiles: No PNG files. dpkg-deb: building package 'sambamba' in '../sambamba_1.0.1+dfsg-2_amd64.deb'. Renaming sambamba-dbgsym_1.0.1+dfsg-2_amd64.deb to sambamba-dbgsym_1.0.1+dfsg-2_amd64.ddeb dpkg-genbuildinfo --build=binary -O../sambamba_1.0.1+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../sambamba_1.0.1+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-05-03T03:44:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ sambamba_1.0.1+dfsg-2_amd64.changes: ------------------------------------ Format: 1.8 Date: Tue, 16 Apr 2024 20:18:00 +0200 Source: sambamba Binary: sambamba Built-For-Profiles: noudeb Architecture: amd64 Version: 1.0.1+dfsg-2 Distribution: oracular-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: sambamba - tools for working with SAM/BAM data Closes: 1067959 Changes: sambamba (1.0.1+dfsg-2) unstable; urgency=medium . * Build-Depends: architecture-is-64-bit, architecture-is-little-endian Closes: #1067959 * Drop unneeded copyright paragraph * Drop unused patches * Standards-Version: 4.7.0 (routine-update) * Set upstream metadata fields: Repository. * Build-Depends: s/pkg-config/pkgconf/ Checksums-Sha1: 1b2b569a8b820abe9514a68e734b0e85792e8a5f 5864898 sambamba-dbgsym_1.0.1+dfsg-2_amd64.ddeb 720121f77ac755a2fce95c82129fe932fd6ef271 8171 sambamba_1.0.1+dfsg-2_amd64.buildinfo 2d6eafa9b194261a5a39ae0fb8912439539a2dbf 663316 sambamba_1.0.1+dfsg-2_amd64.deb Checksums-Sha256: adce9b7823f10a688f813396cf4442c2774f844ea6f99e25de5a59e2f9eab579 5864898 sambamba-dbgsym_1.0.1+dfsg-2_amd64.ddeb 74b23cddf88e2f6ee21b32080b546fd0b92aacbb8ba4d0973dd1ae158950fc44 8171 sambamba_1.0.1+dfsg-2_amd64.buildinfo e8695eaaae4a70e01559375880d1812856534ec291560a61a892a2dcba5ea511 663316 sambamba_1.0.1+dfsg-2_amd64.deb Files: 6b555ffd6e3e3a0ea982af0eb555ea18 5864898 debug optional sambamba-dbgsym_1.0.1+dfsg-2_amd64.ddeb fcc3a2e4456fb1ac63ac51abd4e693a2 8171 science optional sambamba_1.0.1+dfsg-2_amd64.buildinfo f7ffaae43b538e413e4e48f6b92634d3 663316 science optional sambamba_1.0.1+dfsg-2_amd64.deb /<>/sambamba_1.0.1+dfsg-2_amd64.changes.new could not be renamed to /<>/sambamba_1.0.1+dfsg-2_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: sambamba Binary: sambamba sambamba-dbgsym Architecture: amd64 Version: 1.0.1+dfsg-2 Checksums-Md5: 6b555ffd6e3e3a0ea982af0eb555ea18 5864898 sambamba-dbgsym_1.0.1+dfsg-2_amd64.ddeb f7ffaae43b538e413e4e48f6b92634d3 663316 sambamba_1.0.1+dfsg-2_amd64.deb Checksums-Sha1: 1b2b569a8b820abe9514a68e734b0e85792e8a5f 5864898 sambamba-dbgsym_1.0.1+dfsg-2_amd64.ddeb 2d6eafa9b194261a5a39ae0fb8912439539a2dbf 663316 sambamba_1.0.1+dfsg-2_amd64.deb Checksums-Sha256: adce9b7823f10a688f813396cf4442c2774f844ea6f99e25de5a59e2f9eab579 5864898 sambamba-dbgsym_1.0.1+dfsg-2_amd64.ddeb e8695eaaae4a70e01559375880d1812856534ec291560a61a892a2dcba5ea511 663316 sambamba_1.0.1+dfsg-2_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Fri, 03 May 2024 03:44:28 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: architecture-properties (= 0.1.1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu2), autotools-dev (= 20220109.1), base-files (= 13.1ubuntu1), base-passwd (= 3.6.3build1), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), binutils-x86-64-linux-gnu (= 2.42-4ubuntu2), 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0.10-1), libsystemd0 (= 255.4-1ubuntu8), libtasn1-6 (= 4.19.0-3build1), libtinfo6 (= 6.4+20240113-1ubuntu2), libtool (= 2.4.7-7build1), libtsan2 (= 14-20240412-0ubuntu1), libubsan1 (= 14-20240412-0ubuntu1), libuchardet0 (= 0.0.8-1build1), libudev1 (= 255.4-1ubuntu8), libunistring5 (= 1.2-1), libuuid1 (= 2.39.3-9ubuntu6), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libzstd1 (= 1.5.5+dfsg2-2build1), linux-libc-dev (= 6.8.0-31.31), login (= 1:4.13+dfsg1-4ubuntu3), lto-disabled-list (= 47), m4 (= 1.4.19-4build1), make (= 4.3-4.1build2), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1build1), media-types (= 10.1.0), meson (= 1.3.2-1ubuntu1), ncurses-base (= 6.4+20240113-1ubuntu2), ncurses-bin (= 6.4+20240113-1ubuntu2), netbase (= 6.4), ninja-build (= 1.11.1-2), patch (= 2.7.6-7build3), perl (= 5.38.2-3.2build2), perl-base (= 5.38.2-3.2build2), perl-modules-5.38 (= 5.38.2-3.2build2), pkgconf (= 1.8.1-2build1), pkgconf-bin (= 1.8.1-2build1), po-debconf (= 1.0.21+nmu1), python3 (= 3.12.3-0ubuntu1), python3-minimal (= 3.12.3-0ubuntu1), python3-pkg-resources (= 68.1.2-2ubuntu1), python3-setuptools (= 68.1.2-2ubuntu1), python3.12 (= 3.12.3-1), python3.12-minimal (= 3.12.3-1), readline-common (= 8.2-4build1), rpcsvc-proto (= 1.4.2-0ubuntu7), sed (= 4.9-2build1), sensible-utils (= 0.0.22), shunit2 (= 2.1.8-4), sysvinit-utils (= 3.08-6ubuntu3), tar (= 1.35+dfsg-3build1), tzdata (= 2024a-4ubuntu1), util-linux (= 2.39.3-9ubuntu6), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1713291480" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ sambamba_1.0.1+dfsg-2_amd64.deb ------------------------------- new Debian package, version 2.0. size 663316 bytes: control archive=1076 bytes. 866 bytes, 18 lines control 931 bytes, 13 lines md5sums Package: sambamba Version: 1.0.1+dfsg-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2612 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), liblz4-1 (>= 0.0~r127), libphobos2-ldc-shared106 (>= 1:1.36.0), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/lomereiter/sambamba Description: tools for working with SAM/BAM data Sambamba positions itself as a performant alternative to samtools and provides tools for * Powerful filtering with sambamba view --filter * Picard-like SAM header merging in the merge tool * Optional for operations on whole BAMs * Fast copying of a region to a new file with the slice tool * Duplicate marking/removal, using the Picard criteria drwxr-xr-x root/root 0 2024-04-16 18:18 ./ drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/ drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/bin/ -rwxr-xr-x root/root 2638456 2024-04-16 18:18 ./usr/bin/sambamba drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/share/ drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 3072 2023-08-16 09:14 ./usr/share/bash-completion/completions/sambamba drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/share/doc/sambamba/ -rw-r--r-- root/root 2063 2024-04-16 18:18 ./usr/share/doc/sambamba/changelog.Debian.gz -rw-r--r-- root/root 4739 2024-04-16 18:18 ./usr/share/doc/sambamba/copyright drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-16 18:18 ./usr/share/man/man1/ -rw-r--r-- root/root 653 2024-04-16 18:18 ./usr/share/man/man1/sambamba-flagstat.1.gz -rw-r--r-- root/root 733 2024-04-16 18:18 ./usr/share/man/man1/sambamba-index.1.gz -rw-r--r-- root/root 1037 2024-04-16 18:18 ./usr/share/man/man1/sambamba-markdup.1.gz -rw-r--r-- root/root 651 2024-04-16 18:18 ./usr/share/man/man1/sambamba-merge.1.gz -rw-r--r-- root/root 933 2024-04-16 18:18 ./usr/share/man/man1/sambamba-pileup.1.gz -rw-r--r-- root/root 625 2024-04-16 18:18 ./usr/share/man/man1/sambamba-slice.1.gz -rw-r--r-- root/root 1465 2024-04-16 18:18 ./usr/share/man/man1/sambamba-sort.1.gz -rw-r--r-- root/root 2238 2024-04-16 18:18 ./usr/share/man/man1/sambamba-view.1.gz -rw-r--r-- root/root 451 2024-04-16 18:18 ./usr/share/man/man1/sambamba.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 134424 Build-Time: 57 Distribution: oracular-proposed Host Architecture: amd64 Install-Time: 10 Job: sambamba_1.0.1+dfsg-2.dsc Machine Architecture: amd64 Package: sambamba Package-Time: 69 Source-Version: 1.0.1+dfsg-2 Space: 134424 Status: successful Version: 1.0.1+dfsg-2 -------------------------------------------------------------------------------- Finished at 2024-05-03T03:44:29Z Build needed 00:01:09, 134424k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28288717 Scanning for processes to kill in build PACKAGEBUILD-28288717