https://launchpad.net/ubuntu/+source/samtools-legacy/0.1.19+dfsg-5/+build/23073842 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-074 4.15.0-166-generic #174-Ubuntu SMP Wed Dec 8 19:08:37 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_206~519~ubuntu18.04.1 python3-lpbuildd_206~519~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 18 Jan 23:21:42 ntpdate[1709]: adjust time server 10.211.37.1 offset -0.002836 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-23073842 --image-type chroot /home/buildd/filecache-default/c698bf6badd89264039f6cdfcd7c983f87611a3e Creating target for build PACKAGEBUILD-23073842 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-23073842 Starting target for build PACKAGEBUILD-23073842 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-23073842 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23073842 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-23073842 Updating target for build PACKAGEBUILD-23073842 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf Packages [1352 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe armhf Packages [12.8 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5590 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf Packages [161 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [61.1 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf Packages [631 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [239 kB] Fetched 21.9 MB in 7s (2949 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libssl1.1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 ca-certificates cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libbz2-1.0 libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdpkg-perl libext2fs2 libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler readline-common sed sensible-utils systemd systemd-sysv systemd-timesyncd tzdata usrmerge util-linux 110 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 70.0 MB of archives. After this operation, 337 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main armhf debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main armhf libpam0g armhf 1.4.0-10ubuntu2 [56.0 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt-dev armhf 1:4.4.27-1 [122 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main armhf libcrypt1 armhf 1:4.4.27-1 [94.0 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf base-files armhf 12ubuntu2 [63.0 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main armhf debianutils armhf 5.5-1ubuntu1 [106 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf bash armhf 5.1-6ubuntu1 [655 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main armhf bsdutils armhf 1:2.37.2-4ubuntu1 [86.9 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main armhf libgpg-error0 armhf 1.43-2 [61.9 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main armhf libgcrypt20 armhf 1.9.4-3ubuntu2 [438 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main armhf bzip2 armhf 1.0.8-5 [34.2 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-1.0 armhf 1.0.8-5 [31.7 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libubsan1 armhf 11.2.0-14ubuntu1 [894 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf gcc-11-base armhf 11.2.0-14ubuntu1 [21.3 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgcc-s1 armhf 11.2.0-14ubuntu1 [42.6 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgomp1 armhf 11.2.0-14ubuntu1 [100 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libatomic1 armhf 11.2.0-14ubuntu1 [7602 B] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libasan6 armhf 11.2.0-14ubuntu1 [2242 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf cpp-11 armhf 11.2.0-14ubuntu1 [7838 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libcc1-0 armhf 11.2.0-14ubuntu1 [45.8 kB] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libctf0 armhf 2.37.50.20220106-2ubuntu1 [93.8 kB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libctf-nobfd0 armhf 2.37.50.20220106-2ubuntu1 [93.2 kB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.37.50.20220106-2ubuntu1 [3069 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libbinutils armhf 2.37.50.20220106-2ubuntu1 [497 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf binutils-common armhf 2.37.50.20220106-2ubuntu1 [220 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf binutils armhf 2.37.50.20220106-2ubuntu1 [3166 B] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf g++-11 armhf 11.2.0-14ubuntu1 [9010 kB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf gcc-11 armhf 11.2.0-14ubuntu1 [15.8 MB] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgcc-11-dev armhf 11.2.0-14ubuntu1 [839 kB] Get:30 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libstdc++-11-dev armhf 11.2.0-14ubuntu1 [2182 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libstdc++6 armhf 11.2.0-14ubuntu1 [572 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgmp10 armhf 2:6.2.1+dfsg-3ubuntu1 [205 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf libisl23 armhf 0.24-2 [581 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf libmpc3 armhf 1.2.1-1 [39.5 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf libzstd1 armhf 1.4.8+dfsg-3 [285 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main armhf libssl3 armhf 3.0.1-0ubuntu1 [1577 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main armhf libblkid1 armhf 2.37.2-4ubuntu1 [136 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main armhf libuuid1 armhf 2.37.2-4ubuntu1 [23.3 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main armhf libcryptsetup12 armhf 2:2.4.2-1ubuntu4 [186 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main armhf libidn2-0 armhf 2.3.2-2 [67.8 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libffi8 armhf 3.4.2-4 [19.0 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main armhf libp11-kit0 armhf 0.24.0-6 [219 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf libtasn1-6 armhf 4.18.0-4 [36.3 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf libgnutls30 armhf 3.7.2-5ubuntu1 [922 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf systemd-sysv armhf 249.5-2ubuntu4 [10.5 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf systemd-timesyncd armhf 249.5-2ubuntu4 [30.7 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf libapparmor1 armhf 3.0.3-0ubuntu5 [32.4 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf libip4tc2 armhf 1.8.7-1ubuntu4 [17.7 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf libkmod2 armhf 29-1ubuntu1 [40.9 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-8-0 armhf 10.39-3 [190 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libselinux1 armhf 3.3-1build1 [66.7 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main armhf libmount1 armhf 2.37.2-4ubuntu1 [151 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf libseccomp2 armhf 2.5.2-2ubuntu2 [47.7 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf login armhf 1:4.8.1-2ubuntu1 [186 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf util-linux armhf 2.37.2-4ubuntu1 [1130 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main armhf mount armhf 2.37.2-4ubuntu1 [125 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main armhf systemd armhf 249.5-2ubuntu4 [4441 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf libsystemd0 armhf 249.5-2ubuntu4 [296 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf libudev1 armhf 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http://ftpmaster.internal/ubuntu jammy/main armhf logsave armhf 1.46.5-2ubuntu1 [10.1 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main armhf libext2fs2 armhf 1.46.5-2ubuntu1 [191 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main armhf e2fsprogs armhf 1.46.5-2ubuntu1 [566 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main armhf init armhf 1.61 [6102 B] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf libattr1 armhf 1:2.5.1-1 [12.2 kB] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libcap-ng0 armhf 0.7.9-2.2build3 [10.1 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf libcom-err2 armhf 1.46.5-2ubuntu1 [9002 B] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf libk5crypto3 armhf 1.19.2-0ubuntu1 [83.6 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main armhf libkrb5support0 armhf 1.19.2-0ubuntu1 [30.5 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main armhf libkrb5-3 armhf 1.19.2-0ubuntu1 [330 kB] Get:90 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Setting up linux-libc-dev:armhf (5.15.0-17.17) ... Setting up libctf-nobfd0:armhf (2.37.50.20220106-2ubuntu1) ... Setting up libgomp1:armhf (11.2.0-14ubuntu1) ... Setting up bzip2 (1.0.8-5) ... Setting up libasan6:armhf (11.2.0-14ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 18 23:22:57 UTC 2022. Universal Time is now: Tue Jan 18 23:22:57 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:armhf (6.3-2) ... Setting up libmpc3:armhf (1.2.1-1) ... Setting up systemd-timesyncd (249.5-2ubuntu4) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:armhf (11.2.0-14ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libss2:armhf (1.46.5-2ubuntu1) ... Setting up libncursesw6:armhf (6.3-2) ... Setting up libdpkg-perl (1.21.1ubuntu1) ... Setting up logsave (1.46.5-2ubuntu1) ... Setting up libubsan1:armhf (11.2.0-14ubuntu1) ... Setting up libgcc-11-dev:armhf (11.2.0-14ubuntu1) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:armhf (1:4.4.27-1) ... Setting up libbinutils:armhf (2.37.50.20220106-2ubuntu1) ... Setting up libisl23:armhf (0.24-2) ... Setting up openssl (3.0.1-0ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.1.2-1) ... Setting up libcc1-0:armhf (11.2.0-14ubuntu1) ... Setting up libgdbm6:armhf (1.22-1) ... Setting up libctf0:armhf (2.37.50.20220106-2ubuntu1) ... Setting up cpp-11 (11.2.0-14ubuntu1) ... Setting up pkgbinarymangler (149) ... Setting up libreadline8:armhf (8.1.2-1) ... Setting up e2fsprogs (1.46.5-2ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up libgdbm-compat4:armhf (1.22-1) ... Setting up libstdc++-11-dev:armhf (11.2.0-14ubuntu1) ... Setting up gpgconf (2.2.27-3ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.37.50.20220106-2ubuntu1) ... Setting up gpg (2.2.27-3ubuntu1) ... Setting up gpg-agent (2.2.27-3ubuntu1) ... Setting up binutils (2.37.50.20220106-2ubuntu1) ... Setting up dpkg-dev (1.21.1ubuntu1) ... Setting up gcc-11 (11.2.0-14ubuntu1) ... Setting up g++-11 (11.2.0-14ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23073842 armhf jammy-proposed -c chroot:build-PACKAGEBUILD-23073842 --arch=armhf --dist=jammy-proposed --nolog samtools-legacy_0.1.19+dfsg-5.dsc Initiating build PACKAGEBUILD-23073842 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-166-generic #174-Ubuntu SMP Wed Dec 8 19:08:37 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-074.buildd +==============================================================================+ | samtools-legacy 0.1.19+dfsg-5 (armhf) Tue, 18 Jan 2022 23:23:11 +0000 | +==============================================================================+ Package: samtools-legacy Version: 0.1.19+dfsg-5 Source Version: 0.1.19+dfsg-5 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23073842/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- samtools-legacy_0.1.19+dfsg-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/samtools-legacy-jCq6bz/samtools-legacy-0.1.19+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/samtools-legacy-jCq6bz' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-K6HL6w/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-K6HL6w/apt_archive ./ InRelease Get:2 copy:/<>/resolver-K6HL6w/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-K6HL6w/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-K6HL6w/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-K6HL6w/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (46.2 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libssl1.1 systemd-timesyncd Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-K6HL6w/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (60.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13186 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libncurses5-dev, zlib1g-dev, debhelper Filtered Build-Depends: debhelper-compat (= 13), libncurses5-dev, zlib1g-dev, debhelper dpkg-deb: building package 'sbuild-build-depends-samtools-legacy-dummy' in '/<>/resolver-K6HL6w/apt_archive/sbuild-build-depends-samtools-legacy-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-samtools-legacy-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-K6HL6w/apt_archive ./ InRelease Get:2 copy:/<>/resolver-K6HL6w/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-K6HL6w/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-K6HL6w/apt_archive ./ Sources [516 B] Get:5 copy:/<>/resolver-K6HL6w/apt_archive ./ Packages [597 B] Fetched 2076 B in 0s (53.8 kB/s) Reading package lists... Reading package lists... Install samtools-legacy build dependencies (apt-based resolver) --------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libssl1.1 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff ncurses-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-samtools-legacy-dummy zlib1g-dev 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 17.8 MB of archives. After this operation, 61.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-K6HL6w/apt_archive ./ sbuild-build-depends-samtools-legacy-dummy 0.invalid.0 [690 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main armhf libelf1 armhf 0.186-1 [43.2 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf libicu67 armhf 67.1-7ubuntu1 [9788 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main armhf libxml2 armhf 2.9.12+dfsg-5 [598 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf bsdextrautils armhf 2.37.2-4ubuntu1 [77.1 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main armhf libmagic-mgc armhf 1:5.41-2 [257 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf libmagic1 armhf 1:5.41-2 [80.2 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main armhf file armhf 1:5.41-2 [20.6 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main armhf gettext-base armhf 0.21-4ubuntu3 [36.0 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main armhf libuchardet0 armhf 0.0.7-1build1 [75.6 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main armhf groff-base armhf 1.22.4-8 [870 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf libpipeline1 armhf 1.5.5-1 [25.6 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf man-db armhf 2.9.4-4 [1142 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main armhf libsigsegv2 armhf 2.13-1ubuntu2 [13.7 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf m4 armhf 1.4.18-5ubuntu1 [192 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main armhf autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main armhf autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf automake all 1:1.16.5-1.1 [558 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf autopoint all 0.21-4ubuntu3 [422 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf libtool all 2.4.6-15build1 [164 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libdw1 armhf 0.186-1 [228 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf debugedit armhf 1:5.0-4 [43.2 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf dwz armhf 0.14-1build1 [99.2 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf gettext armhf 0.21-4ubuntu3 [755 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf debhelper all 13.5.2ubuntu1 [926 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncurses-dev armhf 6.3-2 [342 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libncurses5-dev armhf 6.3-2 [780 B] Get:36 http://ftpmaster.internal/ubuntu jammy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu7 [157 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.8 MB in 5s (3399 kB/s) Selecting previously unselected package libelf1:armhf. (Reading database ... 13186 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.186-1_armhf.deb ... Unpacking libelf1:armhf (0.186-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../01-libicu67_67.1-7ubuntu1_armhf.deb ... Unpacking libicu67:armhf (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../02-libxml2_2.9.12+dfsg-5_armhf.deb ... Unpacking libxml2:armhf (2.9.12+dfsg-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.37.2-4ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-2_armhf.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../05-libmagic1_1%3a5.41-2_armhf.deb ... Unpacking libmagic1:armhf (1:5.41-2) ... 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Setting up libpipeline1:armhf (1.5.5-1) ... Setting up libncurses-dev:armhf (6.3-2) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-7ubuntu1) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libmagic1:armhf (1:5.41-2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.41-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:armhf (2.13-1ubuntu2) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu7) ... Setting up libuchardet0:armhf (0.0.7-1build1) ... Setting up libncurses5-dev:armhf (6.3-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:armhf (0.186-1) ... Setting up libxml2:armhf (2.9.12+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:armhf (0.186-1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libtool (2.4.6-15build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-8) ... Setting up debugedit (1:5.0-4) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up sbuild-build-depends-samtools-legacy-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-166-generic arm64 (armv7l) Toolchain package versions: binutils_2.37.50.20220106-2ubuntu1 dpkg-dev_1.21.1ubuntu1 g++-11_11.2.0-14ubuntu1 gcc-11_11.2.0-14ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-14ubuntu1 libstdc++6_11.2.0-14ubuntu1 linux-libc-dev_5.15.0-17.17 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.14 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-6ubuntu1 binutils_2.37.50.20220106-2ubuntu1 binutils-arm-linux-gnueabihf_2.37.50.20220106-2ubuntu1 binutils-common_2.37.50.20220106-2ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-14ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.5.2ubuntu1 debianutils_5.5-1ubuntu1 debugedit_1:5.0-4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.21.1ubuntu1 dpkg-dev_1.21.1ubuntu1 dwz_0.14-1build1 e2fsprogs_1.46.5-2ubuntu1 fakeroot_1.25.3-1.1ubuntu3 file_1:5.41-2 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-14ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-14ubuntu1 gcc-11-base_11.2.0-14ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.27-3ubuntu1 gpg-agent_2.2.27-3ubuntu1 gpgconf_2.2.27-3ubuntu1 gpgv_2.2.27-3ubuntu1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.61 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapparmor1_3.0.3-0ubuntu5 libapt-pkg6.0_2.3.14 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-14ubuntu1 libassuan0_2.5.5-1 libatomic1_11.2.0-14ubuntu1 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37.50.20220106-2ubuntu1 libblkid1_2.37.2-4ubuntu1 libbz2-1.0_1.0.8-5 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build3 libcap2_1:2.44-1build2 libcc1-0_11.2.0-14ubuntu1 libcom-err2_1.46.5-2ubuntu1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.2-1ubuntu4 libctf-nobfd0_2.37.50.20220106-2ubuntu1 libctf0_2.37.50.20220106-2ubuntu1 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.5.2ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.21.1ubuntu1 libdw1_0.186-1 libelf1_0.186-1 libext2fs2_1.46.5-2ubuntu1 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-14ubuntu1 libgcc-s1_11.2.0-14ubuntu1 libgcrypt20_1.9.4-3ubuntu2 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.2-5ubuntu1 libgomp1_11.2.0-14ubuntu1 libgpg-error0_1.43-2 libgssapi-krb5-2_1.19.2-0ubuntu1 libhogweed6_3.7.3-1build1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu4 libisl23_0.24-2 libjson-c5_0.15-2build3 libk5crypto3_1.19.2-0ubuntu1 libkeyutils1_1.6.1-2ubuntu2 libkmod2_29-1ubuntu1 libkrb5-3_1.19.2-0ubuntu1 libkrb5support0_1.19.2-0ubuntu1 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-4ubuntu1 libmpc3_1.2.1-1 libmpfr6_4.1.0-3build2 libncurses-dev_6.3-2 libncurses5-dev_6.3-2 libncurses6_6.3-2 libncursesw6_6.3-2 libnettle8_3.7.3-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-10ubuntu2 libpam-modules-bin_1.4.0-10ubuntu2 libpam-runtime_1.4.0-10ubuntu2 libpam0g_1.4.0-10ubuntu2 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.5-1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libreadline8_8.1.2-1 libseccomp2_2.5.2-2ubuntu2 libselinux1_3.3-1build1 libsemanage-common_3.3-1build1 libsemanage2_3.3-1build1 libsepol1_3.1-1ubuntu2 libsepol2_3.3-1 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.37.2-4ubuntu1 libsqlite3-0_3.37.2-2 libss2_1.46.5-2ubuntu1 libssl1.1_1.1.1l-1ubuntu1 libssl3_3.0.1-0ubuntu1 libstdc++-11-dev_11.2.0-14ubuntu1 libstdc++6_11.2.0-14ubuntu1 libsub-override-perl_0.09-2 libsystemd0_249.5-2ubuntu4 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libubsan1_11.2.0-14ubuntu1 libuchardet0_0.0.7-1build1 libudev1_249.5-2ubuntu4 libunistring2_0.9.10-6 libuuid1_2.37.2-4ubuntu1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.1-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.0-17.17 lockfile-progs_0.1.19 login_1:4.8.1-2ubuntu1 logsave_1.46.5-2ubuntu1 lsb-base_11.1.0ubuntu3 lto-disabled-list_18 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-4 mawk_1.3.4.20200120-2build1 mount_2.37.2-4ubuntu1 ncurses-base_6.3-2 ncurses-bin_6.3-2 openssl_3.0.1-0ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-2ubuntu1 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-samtools-legacy-dummy_0.invalid.0 sed_4.8-1ubuntu1 sensible-utils_0.0.17 systemd_249.5-2ubuntu4 systemd-sysv_249.5-2ubuntu4 systemd-timesyncd_249.5-2ubuntu4 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Jan 18 17:53:40 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./samtools-legacy_0.1.19+dfsg-5.dsc dpkg-source: info: extracting samtools-legacy in /<>/samtools-legacy-0.1.19+dfsg dpkg-source: info: unpacking samtools-legacy_0.1.19+dfsg.orig.tar.xz dpkg-source: info: unpacking samtools-legacy_0.1.19+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_example_makefile.patch dpkg-source: info: applying fix_segfault_with_small_ref.patch dpkg-source: info: applying fix_coverage_cap.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying gcc-11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23073842 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23073842 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23073842 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package samtools-legacy dpkg-buildpackage: info: source version 0.1.19+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' make[2]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip samtools *~ *.a *.so.* *.so *.dylib make[2]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' make[2]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/bcftools' rm -fr gmon.out *.o a.out *.dSYM bcftools *~ *.a bcf.aux bcf.log bcf.pdf *.class libbcf.*.dylib libbcf.so* make[2]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/bcftools' make[2]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/misc' rm -fr gmon.out *.o a.out *.exe *.dSYM md5sum-lite md5fa maq2sam-short maq2sam-long ace2sam wgsim bamcheck *~ *.a make[2]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/misc' make[1]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' dh_auto_build -- all all-recur razip lib CFLAGS="-g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2" make -j4 "INSTALL=install --strip-program=true" all all-recur razip lib "CFLAGS=-g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2" make[2]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview.c -o bam_tview.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_plcmd.c -o bam_plcmd.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_view.c -o sam_view.o make[3]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -DBGZF_CACHE -I. bgzf.c -o bgzf.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kstring.c -o kstring.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdup.c -o bam_rmdup.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdupse.c -o bam_rmdupse.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_aux.c -o bam_aux.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_mate.c -o bam_mate.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_stat.c -o bam_stat.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_color.c -o bam_color.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bamtk.c -o bamtk.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam.c -o bam.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kaln.c -o kaln.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf.c -o bam2bcf.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf_indel.c -o bam2bcf_indel.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. errmod.c -o errmod.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_import.c -o bam_import.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam.c -o sam.o bam_import.c: In function ‘append_text’: bam_import.c:179:55: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 179 | fprintf(stderr,"realloc failed to alloc %ld bytes\n", y); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d bam_import.c:186:46: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘uint32_t’ {aka ‘unsigned int’} [-Wformat=] 186 | fprintf(stderr,"append_text FIXME: %ld>=%ld, x=%ld,y=%ld\n", header->l_text+str->l+1,(long)header->n_text,x,y); | ~~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | long int uint32_t {aka unsigned int} | %d bam_import.c:186:58: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 186 | fprintf(stderr,"append_text FIXME: %ld>=%ld, x=%ld,y=%ld\n", header->l_text+str->l+1,(long)header->n_text,x,y); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d bam_import.c:186:64: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 186 | fprintf(stderr,"append_text FIXME: %ld>=%ld, x=%ld,y=%ld\n", header->l_text+str->l+1,(long)header->n_text,x,y); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sample.c -o sample.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_index.c -o bam_index.o bam_index.c: In function ‘bam_index_core’: bam_index.c:178:42: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int32_t’ {aka ‘int’} changes value from ‘last_bin = 4294967295’ to ‘-1’ [-Woverflow] 178 | save_bin = save_tid = last_tid = last_bin = 0xffffffffu; | ^~~~~~~~ bam_index.c: In function ‘bam_index_load_core’: bam_index.c:335:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fread(magic, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~ bam_index.c:342:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 342 | fread(&idx->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ bam_index.c:355:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ bam_index.c:358:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 358 | fread(&key, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~ bam_index.c:362:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 362 | fread(&p->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ bam_index.c:366:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 366 | fread(p->list, 16, p->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ bam_index.c:376:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 376 | fread(&index2->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ bam_index.c:380:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | fread(index2->offset, index2->n, 8, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. cut_target.c -o cut_target.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. phase.c -o phase.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2depth.c -o bam2depth.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_pileup.c -o bam_pileup.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. padding.c -o padding.o padding.c: In function ‘bam_pad2unpad’: padding.c:173:116: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 173 | fprintf(stderr, "[depad] ERROR: (Padded) length of '%s' is %d in BAM header, but %ld in embedded reference\n", bam1_qname(b), h->target_len[r_tid], r.l); | ~~^ ~~~ | | | | long int size_t {aka unsigned int} | %d gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_lpileup.c -o bam_lpileup.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_md.c -o bam_md.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bedcov.c -o bedcov.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razf.c -o razf.o razf.c: In function ‘razf_flush’: razf.c:221:17: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 221 | write(rz->x.fpw, rz->outbuf, RZ_BUFFER_SIZE - rz->stream->avail_out); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c:234:25: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | write(rz->x.fpw, rz->outbuf, RZ_BUFFER_SIZE - rz->stream->avail_out); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c: In function ‘_razf_write’: razf.c:201:17: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | write(rz->x.fpw, rz->outbuf, RZ_BUFFER_SIZE - rz->stream->avail_out); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c: In function ‘razf_close’: razf.c:804:25: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 804 | write(rz->x.fpw, &rz->in, sizeof(int64_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c:805:25: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 805 | write(rz->x.fpw, &rz->out, sizeof(int64_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c:808:25: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 808 | write(rz->x.fpw, &v64, sizeof(int64_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c:810:25: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 810 | write(rz->x.fpw, &v64, sizeof(int64_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c: In function ‘razf_end_flush’: razf.c:258:25: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 258 | write(rz->x.fpw, rz->outbuf, RZ_BUFFER_SIZE - rz->stream->avail_out); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c: In function ‘save_zindex’: razf.c:96:19: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | if(is_be) write(fd, &rz->index->size, sizeof(int)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c:99:17: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 99 | write(fd, &v32, sizeof(uint32_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c:106:9: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | write(fd, rz->index->bin_offsets, sizeof(int64_t) * v32); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ razf.c:107:9: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 107 | write(fd, rz->index->cell_offsets, sizeof(int32_t) * rz->index->size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bam_md.c: In function ‘bam_prob_realn_core’: bam_md.c:214:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 214 | *(bq - 3) = 'Z'; | ~~~~~~~~~~^~~~~ bam_md.c:198:19: note: at offset -2 into destination object of size [0, 2147483647] allocated by ‘bam_aux_get’ 198 | if ((bq = bam_aux_get(b, "BQ")) != 0) ++bq; | ^~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bamshuf.c -o bamshuf.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. faidx.c -o faidx.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bedidx.c -o bedidx.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview_curses.c -o bam_tview_curses.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview_html.c -o bam_tview_html.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. knetfile.c -o knetfile.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_sort.c -o bam_sort.o In file included from knetfile.c:46: knetfile.c: In function ‘kftp_send_cmd’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:236:9: note: in expansion of macro ‘netwrite’ 236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ knetfile.c: In function ‘khttp_connect_file’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:415:9: note: in expansion of macro ‘netwrite’ 415 | netwrite(fp->fd, buf, l); | ^~~~~~~~ make[3]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razip.c -o razip.o make[4]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. knetfile.c -o knetfile.o razip.c: In function ‘main’: razip.c:131:33: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | write(f_dst, buffer, c); | ^~~~~~~~~~~~~~~~~~~~~~~ razip.c: In function ‘write_open’: razip.c:32:25: warning: ignoring return value of ‘scanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 32 | scanf("%c", &c); | ^~~~~~~~~~~~~~~ In file included from knetfile.c:46: knetfile.c: In function ‘kftp_send_cmd’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:236:9: note: in expansion of macro ‘netwrite’ 236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ knetfile.c: In function ‘khttp_connect_file’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:415:9: note: in expansion of macro ‘netwrite’ 415 | netwrite(fp->fd, buf, l); | ^~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. knetfile.c -o knetfile.o In file included from knetfile.c:46: knetfile.c: In function ‘kftp_send_cmd’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:236:9: note: in expansion of macro ‘netwrite’ 236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ knetfile.c: In function ‘khttp_connect_file’: knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ knetfile.c:415:9: note: in expansion of macro ‘netwrite’ 415 | netwrite(fp->fd, buf, l); | ^~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_header.c -o sam_header.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_sort.c -o bam_sort.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_sort.c -o bam_sort.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_reheader.c -o bam_reheader.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kprobaln.c -o kprobaln.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_cat.c -o bam_cat.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_header.c -o sam_header.o ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o ar: `u' modifier ignored since `D' is the default (see `U') make[3]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' make[3]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/bcftools' gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf.c -o bcf.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_header.c -o sam_header.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. vcf.c -o vcf.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcfutils.c -o bcfutils.o ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o ar: `u' modifier ignored since `D' is the default (see `U') make[4]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' make[4]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/bcftools' gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. vcf.c -o vcf.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. prob1.c -o prob1.o gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o razip razip.o razf.o knetfile.o -lz ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o ar: `u' modifier ignored since `D' is the default (see `U') gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. em.c -o em.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcfutils.c -o bcfutils.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kfunc.c -o kfunc.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kmin.c -o kmin.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. index.c -o index.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. fet.c -o fet.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. mut.c -o mut.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. prob1.c -o prob1.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf2qcall.c -o bcf2qcall.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. mut.c -o mut.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview_html.c -o bam_tview_html.o ar -csru libbcf.a bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o ar: `u' modifier ignored since `D' is the default (see `U') make[3]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/bcftools' make[3]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/misc' make[3]: Nothing to be done for 'lib'. make[3]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/misc' gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o bam_tview_curses.o bam_tview_html.o -Wl,-Bsymbolic-functions -Wl,-z,relro libbam.a -Lbcftools -lbcf -lcurses -lm -lz -lpthread ar -csru libbcf.a bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o ar: `u' modifier ignored since `D' is the default (see `U') make[4]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/bcftools' make[4]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/misc' make[4]: Nothing to be done for 'lib'. make[4]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/misc' gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o bam_tview_curses.o bam_tview_html.o -Wl,-Bsymbolic-functions -Wl,-z,relro libbam.a -Lbcftools -lbcf -lcurses -lm -lz -lpthread make[3]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' make[3]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/bcftools' gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. call1.c -o call1.o gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. main.c -o main.o gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o bcftools call1.o main.o ../kstring.o ../bgzf.o ../knetfile.o ../bedidx.o -L. -lbcf -lm -lz -lpthread make[3]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/bcftools' make[3]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/misc' gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -DMD5SUM_MAIN -o md5sum-lite.o md5.c gcc -c -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. md5.c -o md5.o gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -c -I.. -o md5fa.o md5fa.c gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o maq2sam-short maq2sam.c -lz gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -DMAQ_LONGREADS -o maq2sam-long maq2sam.c -lz gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -c -I.. -o ace2sam.o ace2sam.c gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -c -I.. -o wgsim.o wgsim.c ace2sam.c: In function ‘main’: ace2sam.c:112:61: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 112 | fprintf(stderr, "H @SQ\tSN:%s\tLN:%ld\n", t[0].s, t[is_padded?1:2].l); // The SAM header line | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -c -I.. -o bamcheck.o bamcheck.c gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o md5sum-lite md5sum-lite.o gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o md5fa md5.o md5fa.o -lz gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o wgsim wgsim.o -lm -lz gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o ace2sam ace2sam.o -lz gcc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -o bamcheck bamcheck.o -L.. -lm -lbam -lpthread -lz make[3]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/misc' make[2]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' make[1]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' /usr/bin/make -C examples all make[2]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg/examples' ../samtools faidx ex1.fa ../samtools import ex1.fa.fai ex1.sam.gz ex1.bam [sam_header_read2] 2 sequences loaded. ../samtools index ex1.bam ../samtools view -h ex1.bam | awk 'BEGIN{FS=OFS="\t"}{if(/^@/)print;else{$1=$1"a";print}}' | ../samtools view -bS - > ex1a.bam [samopen] SAM header is present: 2 sequences. ../samtools view -h ex1.bam | awk 'BEGIN{FS=OFS="\t"}{if(/^@/)print;else{$1=$1"b";print}}' | ../samtools view -bS - > ex1b.bam [samopen] SAM header is present: 2 sequences. (echo "@RG ID:ex1 LB:ex1 SM:ex1"; echo "@RG ID:ex1a LB:ex1 SM:ex1"; echo "@RG ID:ex1b LB:ex1b SM:ex1b") > ex1f.rg ../samtools merge -rh ex1f.rg ex1f.bam ex1.bam ex1a.bam ex1b.bam ../samtools rmdup ex1f.bam ex1f-rmduppe.bam [bam_rmdup_core] processing reference seq1... [bam_rmdup_core] processing reference seq2... [bam_rmdup_core] 1572 / 3144 = 0.5000 in library 'ex1' [bam_rmdup_core] 0 / 1572 = 0.0000 in library 'ex1b' ../samtools rmdup -S ex1f.bam ex1f-rmdupse.bam [bam_rmdupse_core] 4145 / 6542 = 0.6336 in library 'ex1' [bam_rmdupse_core] 874 / 3271 = 0.2672 in library 'ex1b' ../samtools mpileup -gf ex1.fa ex1.bam > ex1.bcf [mpileup] 1 samples in 1 input files Set max per-file depth to 8000 cc -g -O2 -ffile-prefix-map=/<>/samtools-legacy-0.1.19+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -I.. calDepth.c -o calDepth -L.. -lbam -lm -lz -lpthread -Wl,-Bsymbolic-functions -Wl,-z,relro # You can now launch the viewer with: 'samtools tview ex1.bam ex1.fa' make[2]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg/examples' make[1]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/libbam-dev/ -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/samtools-legacy-0.1.19+dfsg' dh_installchangelogs NEWS make[1]: Leaving directory '/<>/samtools-legacy-0.1.19+dfsg' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libbam-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libbam-dev (in debian/libbam-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbam-dev/DEBIAN/control, package libbam-dev, directory debian/libbam-dev .. removing usr/share/doc/libbam-dev/changelog.gz pkgstripfiles: Truncating usr/share/doc/libbam-dev/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbam-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbam-dev' in '../libbam-dev_0.1.19+dfsg-5_armhf.deb'. dpkg-genbuildinfo --build=any -O../samtools-legacy_0.1.19+dfsg-5_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../samtools-legacy_0.1.19+dfsg-5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-01-18T23:24:11Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ samtools-legacy_0.1.19+dfsg-5_armhf.changes: -------------------------------------------- Format: 1.8 Date: Tue, 18 Jan 2022 18:49:14 +0100 Source: samtools-legacy Binary: libbam-dev Built-For-Profiles: noudeb Architecture: armhf Version: 0.1.19+dfsg-5 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbam-dev - manipulates nucleotide sequence alignments in BAM or SAM format Changes: samtools-legacy (0.1.19+dfsg-5) unstable; urgency=medium . * Team upload. * Better patch by John Marshall for "format not a string" * Really fix watch file * Add missing build dependency on dh addon. Checksums-Sha1: ea02e27f661f1817e9ad564c8530eb1b64181e9a 103590 libbam-dev_0.1.19+dfsg-5_armhf.deb 29b5670cec5cfa5abcf26c79b33cb8db50a2bbe6 5523 samtools-legacy_0.1.19+dfsg-5_armhf.buildinfo Checksums-Sha256: b1fbc9e6dd53396dc6cc9727708fe7d2b40490db67f181fd8fb028352f66504b 103590 libbam-dev_0.1.19+dfsg-5_armhf.deb d997714cd556ee646966f3f6e5c1568d40aa18cac476d74a6a76ca1ed90f62eb 5523 samtools-legacy_0.1.19+dfsg-5_armhf.buildinfo Files: 39142522788b93a09bf3c37f9702a072 103590 libdevel optional libbam-dev_0.1.19+dfsg-5_armhf.deb a65f609f966c600c144f48ac91a025aa 5523 science optional samtools-legacy_0.1.19+dfsg-5_armhf.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: samtools-legacy Binary: libbam-dev Architecture: armhf Version: 0.1.19+dfsg-5 Checksums-Md5: 39142522788b93a09bf3c37f9702a072 103590 libbam-dev_0.1.19+dfsg-5_armhf.deb Checksums-Sha1: ea02e27f661f1817e9ad564c8530eb1b64181e9a 103590 libbam-dev_0.1.19+dfsg-5_armhf.deb Checksums-Sha256: b1fbc9e6dd53396dc6cc9727708fe7d2b40490db67f181fd8fb028352f66504b 103590 libbam-dev_0.1.19+dfsg-5_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Tue, 18 Jan 2022 23:24:10 +0000 Build-Path: /<>/samtools-legacy-0.1.19+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-6ubuntu1), binutils (= 2.37.50.20220106-2ubuntu1), binutils-arm-linux-gnueabihf (= 2.37.50.20220106-2ubuntu1), binutils-common (= 2.37.50.20220106-2ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-5), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-14ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1ubuntu1), debugedit (= 1:5.0-4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.21.1ubuntu1), dpkg-dev (= 1.21.1ubuntu1), dwz (= 0.14-1build1), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-14ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-14ubuntu1), gcc-11-base (= 11.2.0-14ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-14ubuntu1), libatomic1 (= 11.2.0-14ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.37.50.20220106-2ubuntu1), libblkid1 (= 2.37.2-4ubuntu1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-14ubuntu1), libcom-err2 (= 1.46.5-2ubuntu1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.37.50.20220106-2ubuntu1), libctf0 (= 2.37.50.20220106-2ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdpkg-perl (= 1.21.1ubuntu1), libdw1 (= 0.186-1), libelf1 (= 0.186-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-14ubuntu1), libgcc-s1 (= 11.2.0-14ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgomp1 (= 11.2.0-14ubuntu1), libgpg-error0 (= 1.43-2), libgssapi-krb5-2 (= 1.19.2-0ubuntu1), libicu67 (= 67.1-7ubuntu1), libisl23 (= 0.24-2), libk5crypto3 (= 1.19.2-0ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.19.2-0ubuntu1), libkrb5support0 (= 1.19.2-0ubuntu1), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libncurses-dev (= 6.3-2), libncurses5-dev (= 6.3-2), libncurses6 (= 6.3-2), libncursesw6 (= 6.3-2), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libpam-modules (= 1.4.0-10ubuntu2), libpam-modules-bin (= 1.4.0-10ubuntu2), libpam-runtime (= 1.4.0-10ubuntu2), libpam0g (= 1.4.0-10ubuntu2), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.5-1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1build1), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.37.2-4ubuntu1), libssl3 (= 3.0.1-0ubuntu1), libstdc++-11-dev (= 11.2.0-14ubuntu1), libstdc++6 (= 11.2.0-14ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-2ubuntu4), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libubsan1 (= 11.2.0-14ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 249.5-2ubuntu4), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4ubuntu1), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-17.17), login (= 1:4.8.1-2ubuntu1), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 18), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1ubuntu1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), util-linux (= 2.37.2-4ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1642528154" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbam-dev_0.1.19+dfsg-5_armhf.deb ---------------------------------- new Debian package, version 2.0. size 103590 bytes: control archive=1001 bytes. 958 bytes, 21 lines control 582 bytes, 9 lines md5sums Package: libbam-dev Source: samtools-legacy Version: 0.1.19+dfsg-5 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 260 Depends: zlib1g-dev Section: libdevel Priority: optional Homepage: https://www.htslib.org/ Description: manipulates nucleotide sequence alignments in BAM or SAM format The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) format. It now supports importing from or exporting to SAM, sorting, merging, generating pileup, and quickly retrieval of reads overlapped with a specified region. . This library is part of SAMtools version 0.1.19. It is obsolete and provided only to build software that has not yet transitioned to the HTSlib, which replaces this library. drwxr-xr-x root/root 0 2022-01-18 17:49 ./ drwxr-xr-x root/root 0 2022-01-18 17:49 ./usr/ drwxr-xr-x root/root 0 2022-01-18 17:49 ./usr/include/ drwxr-xr-x root/root 0 2022-01-18 17:49 ./usr/include/samtools/ -rw-r--r-- root/root 25788 2013-03-18 14:43 ./usr/include/samtools/bam.h -rw-r--r-- root/root 6326 2013-03-18 14:43 ./usr/include/samtools/bgzf.h -rw-r--r-- root/root 3188 2013-03-18 14:43 ./usr/include/samtools/faidx.h -rw-r--r-- root/root 17815 2013-03-18 14:43 ./usr/include/samtools/khash.h -rw-r--r-- root/root 2688 2013-03-18 14:43 ./usr/include/samtools/sam.h drwxr-xr-x root/root 0 2022-01-18 17:49 ./usr/lib/ -rw-r--r-- root/root 176898 2022-01-18 17:49 ./usr/lib/libbam.a drwxr-xr-x root/root 0 2022-01-18 17:49 ./usr/share/ drwxr-xr-x root/root 0 2022-01-18 17:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-18 17:49 ./usr/share/doc/libbam-dev/ -rw-r--r-- root/root 381 2022-01-18 17:49 ./usr/share/doc/libbam-dev/README.Debian -rw-r--r-- root/root 1787 2022-01-18 17:49 ./usr/share/doc/libbam-dev/changelog.Debian.gz -rw-r--r-- root/root 3824 2022-01-18 17:49 ./usr/share/doc/libbam-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 31 Distribution: jammy-proposed Host Architecture: armhf Install-Time: 26 Job: samtools-legacy_0.1.19+dfsg-5.dsc Machine Architecture: arm64 Package: samtools-legacy Package-Time: 60 Source-Version: 0.1.19+dfsg-5 Space: n/a Status: successful Version: 0.1.19+dfsg-5 -------------------------------------------------------------------------------- Finished at 2022-01-18T23:24:11Z Build needed 00:01:00, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-23073842 Scanning for processes to kill in build PACKAGEBUILD-23073842