RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '51a7f196d7b169451dfea927f02f6c91a8ac4719', '/home/buildd/filecache-default/45c5606d3296548efdab3a948d4ace04803e6913'] Synching the system clock with the buildd NTP service... 22 Oct 14:35:14 ntpdate[24427]: adjust time server 10.122.37.1 offset 0.002195 sec Unpacking chroot for build 51a7f196d7b169451dfea927f02f6c91a8ac4719 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '51a7f196d7b169451dfea927f02f6c91a8ac4719'] Mounting chroot for build 51a7f196d7b169451dfea927f02f6c91a8ac4719 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '51a7f196d7b169451dfea927f02f6c91a8ac4719', 'deb http://ftpmaster.internal/ubuntu natty main universe'] Overriding sources.list in build-51a7f196d7b169451dfea927f02f6c91a8ac4719 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '51a7f196d7b169451dfea927f02f6c91a8ac4719', 'amd64'] Updating debian chroot for build 51a7f196d7b169451dfea927f02f6c91a8ac4719 Get:1 http://ftpmaster.internal natty Release.gpg [198 B] Ign http://ftpmaster.internal/ubuntu/ natty/main Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/universe Translation-en Get:2 http://ftpmaster.internal natty Release [39.8 kB] Get:3 http://ftpmaster.internal natty/main amd64 Packages [1499 kB] Get:4 http://ftpmaster.internal natty/universe amd64 Packages [5806 kB] Fetched 7346 kB in 4s (1518 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: busybox-initramfs cpp g++ gcc linux-libc-dev 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1039 kB of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! busybox-initramfs cpp gcc g++ linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main busybox-initramfs amd64 1:1.17.1-6ubuntu1 [190 kB] Get:2 http://ftpmaster.internal/ubuntu/ natty/main cpp amd64 4:4.5.1-1ubuntu3 [37.2 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main gcc amd64 4:4.5.1-1ubuntu3 [5084 B] Get:4 http://ftpmaster.internal/ubuntu/ natty/main g++ amd64 4:4.5.1-1ubuntu3 [1450 B] Get:5 http://ftpmaster.internal/ubuntu/ natty/main linux-libc-dev amd64 2.6.36-1.7 [805 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1039 kB in 0s (13.8 MB/s) (Reading database ... 14351 files and directories currently installed.) Preparing to replace busybox-initramfs 1:1.17.1-4ubuntu1 (using .../busybox-initramfs_1%3a1.17.1-6ubuntu1_amd64.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace cpp 4:4.5.1-1ubuntu2 (using .../cpp_4%3a4.5.1-1ubuntu3_amd64.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.5.1-1ubuntu2 (using .../gcc_4%3a4.5.1-1ubuntu3_amd64.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.5.1-1ubuntu2 (using .../g++_4%3a4.5.1-1ubuntu3_amd64.deb) ... Unpacking replacement g++ ... Preparing to replace linux-libc-dev 2.6.36-1.6 (using .../linux-libc-dev_2.6.36-1.7_amd64.deb) ... Unpacking replacement linux-libc-dev ... Setting up busybox-initramfs (1:1.17.1-6ubuntu1) ... Setting up cpp (4:4.5.1-1ubuntu3) ... Setting up gcc (4:4.5.1-1ubuntu3) ... Setting up g++ (4:4.5.1-1ubuntu3) ... Setting up linux-libc-dev (2.6.36-1.7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '51a7f196d7b169451dfea927f02f6c91a8ac4719', 'amd64', 'natty', '--nolog', '--batch', '--archive=ubuntu', '--dist=natty', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'scikit-learn_0.4-3.dsc'] Initiating build 51a7f196d7b169451dfea927f02f6c91a8ac4719 with 2 processor cores. Automatic build of scikit-learn_0.4-3 on yellow by sbuild/amd64 1.170.5 Build started at 20101022-1435 ****************************************************************************** scikit-learn_0.4-3.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.50), python-all-dev (>= 2.5), python-support (>= 0.6), python-numpy, python-scipy, libsvm-dev (>= 2.84.0), python-sphinx, graphviz, python-nose, python-setuptools, cython, python-matplotlib, ipython, swig sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing python-all-dev: missing python-support: missing python-numpy: missing python-scipy: missing libsvm-dev: missing python-sphinx: missing graphviz: missing python-nose: missing python-setuptools: missing cython: missing python-matplotlib: missing ipython: missing swig: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python-all-dev python-support python-numpy python-scipy libsvm-dev python-sphinx graphviz python-nose python-setuptools cython python-matplotlib ipython swig Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils defoma file fontconfig fontconfig-config gettext gettext-base gir1.0-glib-2.0 groff-base html2text intltool-debian libamd2.2.0 libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3gf libcairo2 libcdt4 libcgraph5 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libffi5 libfontconfig1 libfreetype6 libgd2-noxpm libgdk-pixbuf2.0-0 libgfortran3 libgirepository1.0-1 libgraph4 libgtk2.0-0 libgtk2.0-common libgvc5 libgvpr1 libice6 libjasper1 libjpeg62 libjs-jquery liblapack3gf libmagic1 libnewt0.52 libpango1.0-0 libpango1.0-common libpathplan4 libpixman-1-0 libpopt0 libpython2.6 libpython2.7 libsm6 libsqlite3-0 libssl-dev libsvm2 libthai-data libthai0 libtiff4 libumfpack5.4.0 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxss1 libxt6 man-db mime-support po-debconf python python-all python-cairo python-central python-dateutil python-dev python-docutils python-gobject python-jinja2 python-markupsafe python-matplotlib-data python-pexpect python-pkg-resources python-pygments python-pyparsing python-roman python-tz python2.6 python2.6-dev python2.7 python2.7-dev python2.7-minimal shared-mime-info tcl8.5 tk8.5 ttf-dejavu-core ttf-lyx ucf whiptail x11-common zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make defoma-doc psfontmgr x-ttcidfont-conf dfontmgr libfont-freetype-perl gettext-doc gsfonts graphviz-doc groff python-profiler python-gtk2 python-qt3 python-qt4 cups-common libgd-tools librsvg2-common gvfs libjasper-runtime javascript-common ttf-japanese-gothic ttf-japanese-mincho ttf-thryomanes ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl python-doc python-tk texlive-latex-recommended texlive-latex-base texlive-lang-french python-gobject-dbg python-jinja2-doc dvipng python-configobj python-excelerator python-matplotlib-doc python-traits texlive-extra-utils texlive-latex-extra python-coverage python-numpy-doc python-numpy-dbg gfortran python-distribute python-distribute-doc python-chardet ttf-bitstream-vera jsmath python2.6-doc python2.6-profiler python2.7-doc python2.7-profiler binfmt-support swig-examples swig-doc tclreadline Recommended packages: curl wget lynx ttf-liberation python-wxgtk2.8 global python-openssl python-foolscap python-zope.interface python-twisted-core libatk1.0-data hicolor-icon-theme libgtk2.0-bin libfribidi0 xml-core libmail-sendmail-perl python-imaging libpaper-utils python-lxml python-gobject-cairo python-glade2 xterm x-terminal-emulator The following NEW packages will be installed: bsdmainutils cython debhelper defoma file fontconfig fontconfig-config gettext gettext-base gir1.0-glib-2.0 graphviz groff-base html2text intltool-debian ipython libamd2.2.0 libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3gf libcairo2 libcdt4 libcgraph5 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libffi5 libfontconfig1 libfreetype6 libgd2-noxpm libgdk-pixbuf2.0-0 libgfortran3 libgirepository1.0-1 libgraph4 libgtk2.0-0 libgtk2.0-common libgvc5 libgvpr1 libice6 libjasper1 libjpeg62 libjs-jquery liblapack3gf libmagic1 libnewt0.52 libpango1.0-0 libpango1.0-common libpathplan4 libpixman-1-0 libpopt0 libpython2.6 libpython2.7 libsm6 libsqlite3-0 libssl-dev libsvm-dev libsvm2 libthai-data libthai0 libtiff4 libumfpack5.4.0 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxss1 libxt6 man-db mime-support po-debconf python python-all python-all-dev python-cairo python-central python-dateutil python-dev python-docutils python-gobject python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-nose python-numpy python-pexpect python-pkg-resources python-pygments python-pyparsing python-roman python-scipy python-setuptools python-sphinx python-support python-tz python2.6 python2.6-dev python2.7 python2.7-dev python2.7-minimal shared-mime-info swig tcl8.5 tk8.5 ttf-dejavu-core ttf-lyx ucf whiptail x11-common zlib1g-dev 0 upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 75.8 MB of archives. After this operation, 249 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! x11-common libmagic1 file libexpat1 libnewt0.52 libpopt0 libsqlite3-0 mime-support python2.6 python python-central ucf whiptail bsdmainutils ttf-dejavu-core fontconfig-config gettext-base libffi5 libgirepository1.0-1 gir1.0-glib-2.0 groff-base libfreetype6 libfontconfig1 libpixman-1-0 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1 libcairo2 libxext6 libxml2 man-db python-support python-cairo python-gobject cython html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper defoma fontconfig libcdt4 libcgraph5 libjpeg62 libgd2-noxpm libgraph4 libpango1.0-common libdatrie1 libthai-data libthai0 libxft2 libpango1.0-0 libpathplan4 libxdot4 libgvc5 libgvpr1 libice6 libsm6 libxt6 libxmu6 libxpm4 libxaw7 graphviz python-pexpect ipython libamd2.2.0 libatk1.0-0 libavahi-common-data libavahi-common3 libavahi-client3 libgfortran3 libblas3gf libcups2 libexpat1-dev libjasper1 libtiff4 libgdk-pixbuf2.0-0 libgtk2.0-common libxfixes3 libxcomposite1 libxcursor1 libxdamage1 libxi6 libxinerama1 libxrandr2 shared-mime-info libgtk2.0-0 libjs-jquery liblapack3gf libpython2.6 python2.7-minimal python2.7 libpython2.7 zlib1g-dev libssl-dev libsvm2 libsvm-dev libumfpack5.4.0 libxss1 python-all python2.6-dev python-dev python2.7-dev python-all-dev python-dateutil python-roman python-docutils python-markupsafe python-jinja2 ttf-lyx python-matplotlib-data python-numpy python-pyparsing python-tz tcl8.5 tk8.5 python-matplotlib python-pkg-resources python-nose python-pygments python-setuptools python-sphinx swig python-scipy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main x11-common all 1:7.5+6ubuntu3 [309 kB] Get:2 http://ftpmaster.internal/ubuntu/ natty/main libmagic1 amd64 5.03-5ubuntu1 [392 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main file amd64 5.03-5ubuntu1 [48.0 kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main libexpat1 amd64 2.0.1-7ubuntu1 [138 kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main libnewt0.52 amd64 0.52.11-2ubuntu1 [60.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main libpopt0 amd64 1.16-1 [35.1 kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main libsqlite3-0 amd64 3.7.3-1 [394 kB] Get:8 http://ftpmaster.internal/ubuntu/ natty/main mime-support all 3.48-1ubuntu2 [34.7 kB] Get:9 http://ftpmaster.internal/ubuntu/ natty/main python2.6 amd64 2.6.6-6ubuntu1 [2463 kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main python all 2.6.6-5ubuntu1 [172 kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main python-central all 0.6.15ubuntu2 [47.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main ucf all 3.0025+nmu1 [69.1 kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main whiptail amd64 0.52.11-2ubuntu1 [40.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main bsdmainutils amd64 8.0.11ubuntu1 [205 kB] Get:15 http://ftpmaster.internal/ubuntu/ natty/main ttf-dejavu-core all 2.31-1 [1450 kB] Get:16 http://ftpmaster.internal/ubuntu/ natty/main fontconfig-config all 2.8.0-2ubuntu1 [205 kB] Get:17 http://ftpmaster.internal/ubuntu/ natty/main gettext-base amd64 0.18.1.1-1ubuntu2 [99.2 kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main libffi5 amd64 3.0.9-2ubuntu2 [19.9 kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main libgirepository1.0-1 amd64 0.9.12-0ubuntu1 [56.0 kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main gir1.0-glib-2.0 amd64 0.9.12-0ubuntu1 [113 kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main groff-base amd64 1.20.1-10 [1130 kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main libfreetype6 amd64 2.4.2-2 [374 kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main libfontconfig1 amd64 2.8.0-2ubuntu1 [285 kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main libpixman-1-0 amd64 0.18.4-1 [275 kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main libxau6 amd64 1:1.0.6-1 [16.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main libxdmcp6 amd64 1:1.0.3-2 [19.2 kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main libxcb1 amd64 1.6-1 [43.8 kB] Get:28 http://ftpmaster.internal/ubuntu/ natty/main libx11-data all 2:1.3.3-3ubuntu1 [215 kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main libx11-6 amd64 2:1.3.3-3ubuntu1 [842 kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main libxcb-render0 amd64 1.6-1 [15.7 kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main libxcb-shm0 amd64 1.6-1 [9242 B] Get:32 http://ftpmaster.internal/ubuntu/ natty/main libxrender1 amd64 1:0.9.6-1 [30.8 kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main libcairo2 amd64 1.10.0-1ubuntu2 [938 kB] Get:34 http://ftpmaster.internal/ubuntu/ natty/main libxext6 amd64 2:1.1.2-1 [45.3 kB] Get:35 http://ftpmaster.internal/ubuntu/ natty/main libxml2 amd64 2.7.7.dfsg-4 [874 kB] Get:36 http://ftpmaster.internal/ubuntu/ natty/main man-db amd64 2.5.7-6 [1327 kB] Get:37 http://ftpmaster.internal/ubuntu/ natty/main python-support all 1.0.10ubuntu1 [33.6 kB] Get:38 http://ftpmaster.internal/ubuntu/ natty/main python-cairo amd64 1.8.8-1 [51.9 kB] Get:39 http://ftpmaster.internal/ubuntu/ natty/main python-gobject amd64 2.21.5-0ubuntu3 [320 kB] Get:40 http://ftpmaster.internal/ubuntu/ natty/universe cython amd64 0.13-1 [858 kB] Get:41 http://ftpmaster.internal/ubuntu/ natty/main html2text amd64 1.3.2a-15 [104 kB] Get:42 http://ftpmaster.internal/ubuntu/ natty/main libcroco3 amd64 0.6.2-1 [101 kB] Get:43 http://ftpmaster.internal/ubuntu/ natty/main libunistring0 amd64 0.9.3-3 [425 kB] Get:44 http://ftpmaster.internal/ubuntu/ natty/main gettext amd64 0.18.1.1-1ubuntu2 [1317 kB] Get:45 http://ftpmaster.internal/ubuntu/ natty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:46 http://ftpmaster.internal/ubuntu/ natty/main po-debconf all 1.0.16 [224 kB] Get:47 http://ftpmaster.internal/ubuntu/ natty/main debhelper all 8.0.0ubuntu1 [460 kB] Get:48 http://ftpmaster.internal/ubuntu/ natty/main defoma all 0.11.11ubuntu1 [101 kB] Get:49 http://ftpmaster.internal/ubuntu/ natty/main fontconfig amd64 2.8.0-2ubuntu1 [158 kB] Get:50 http://ftpmaster.internal/ubuntu/ natty/main libcdt4 amd64 2.26.3-5 [58.8 kB] Get:51 http://ftpmaster.internal/ubuntu/ natty/main libcgraph5 amd64 2.26.3-5 [87.1 kB] Get:52 http://ftpmaster.internal/ubuntu/ natty/main libjpeg62 amd64 6b1-1 [94.7 kB] Get:53 http://ftpmaster.internal/ubuntu/ natty/main libgd2-noxpm amd64 2.0.36~rc1~dfsg-3.2ubuntu1 [213 kB] Get:54 http://ftpmaster.internal/ubuntu/ natty/main libgraph4 amd64 2.26.3-5 [72.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ natty/main libpango1.0-common all 1.28.3-0ubuntu1 [114 kB] Get:56 http://ftpmaster.internal/ubuntu/ natty/main libdatrie1 amd64 0.2.4-1 [27.3 kB] Get:57 http://ftpmaster.internal/ubuntu/ natty/main libthai-data all 0.1.14-2 [197 kB] Get:58 http://ftpmaster.internal/ubuntu/ natty/main libthai0 amd64 0.1.14-2 [41.7 kB] Get:59 http://ftpmaster.internal/ubuntu/ natty/main libxft2 amd64 2.1.14-2ubuntu1 [56.3 kB] Get:60 http://ftpmaster.internal/ubuntu/ natty/main libpango1.0-0 amd64 1.28.3-0ubuntu1 [327 kB] Get:61 http://ftpmaster.internal/ubuntu/ natty/main libpathplan4 amd64 2.26.3-5 [63.6 kB] Get:62 http://ftpmaster.internal/ubuntu/ natty/main libxdot4 amd64 2.26.3-5 [53.3 kB] Get:63 http://ftpmaster.internal/ubuntu/ natty/main libgvc5 amd64 2.26.3-5 [557 kB] Get:64 http://ftpmaster.internal/ubuntu/ natty/main libgvpr1 amd64 2.26.3-5 [242 kB] Get:65 http://ftpmaster.internal/ubuntu/ natty/main libice6 amd64 2:1.0.6-1 [54.3 kB] Get:66 http://ftpmaster.internal/ubuntu/ natty/main libsm6 amd64 2:1.1.1-1 [25.4 kB] Get:67 http://ftpmaster.internal/ubuntu/ natty/main libxt6 amd64 1:1.0.7-1 [195 kB] Get:68 http://ftpmaster.internal/ubuntu/ natty/main libxmu6 amd64 2:1.0.5-2 [57.7 kB] Get:69 http://ftpmaster.internal/ubuntu/ natty/main libxpm4 amd64 1:3.5.8-1 [44.7 kB] Get:70 http://ftpmaster.internal/ubuntu/ natty/main libxaw7 amd64 2:1.0.7-1 [212 kB] Get:71 http://ftpmaster.internal/ubuntu/ natty/main graphviz amd64 2.26.3-5 [375 kB] Get:72 http://ftpmaster.internal/ubuntu/ natty/main python-pexpect all 2.3-1build1 [165 kB] Get:73 http://ftpmaster.internal/ubuntu/ natty/universe ipython all 0.10-2ubuntu1 [5507 kB] Get:74 http://ftpmaster.internal/ubuntu/ natty/main libamd2.2.0 amd64 1:3.4.0-2ubuntu1 [29.8 kB] Get:75 http://ftpmaster.internal/ubuntu/ natty/main libatk1.0-0 amd64 1.32.0-0ubuntu2 [58.9 kB] Get:76 http://ftpmaster.internal/ubuntu/ natty/main libavahi-common-data amd64 0.6.27-2ubuntu3 [35.5 kB] Get:77 http://ftpmaster.internal/ubuntu/ natty/main libavahi-common3 amd64 0.6.27-2ubuntu3 [25.1 kB] Get:78 http://ftpmaster.internal/ubuntu/ natty/main libavahi-client3 amd64 0.6.27-2ubuntu3 [56.7 kB] Get:79 http://ftpmaster.internal/ubuntu/ natty/main libgfortran3 amd64 4.5.1-9ubuntu1 [287 kB] Get:80 http://ftpmaster.internal/ubuntu/ natty/main libblas3gf amd64 1.2-8 [245 kB] Get:81 http://ftpmaster.internal/ubuntu/ natty/main libcups2 amd64 1.4.4-6ubuntu2.1 [232 kB] Get:82 http://ftpmaster.internal/ubuntu/ natty/main libexpat1-dev amd64 2.0.1-7ubuntu1 [220 kB] Get:83 http://ftpmaster.internal/ubuntu/ natty/main libjasper1 amd64 1.900.1-7 [154 kB] Get:84 http://ftpmaster.internal/ubuntu/ natty/main libtiff4 amd64 3.9.4-5 [150 kB] Get:85 http://ftpmaster.internal/ubuntu/ natty/main libgdk-pixbuf2.0-0 amd64 2.22.0-1ubuntu2 [197 kB] Get:86 http://ftpmaster.internal/ubuntu/ natty/main libgtk2.0-common all 2.22.0-0ubuntu3 [500 kB] Get:87 http://ftpmaster.internal/ubuntu/ natty/main libxfixes3 amd64 1:4.0.5-1 [19.2 kB] Get:88 http://ftpmaster.internal/ubuntu/ natty/main libxcomposite1 amd64 1:0.4.2-1 [15.6 kB] Get:89 http://ftpmaster.internal/ubuntu/ natty/main libxcursor1 amd64 1:1.1.10-2 [25.6 kB] Get:90 http://ftpmaster.internal/ubuntu/ natty/main libxdamage1 amd64 1:1.1.3-1 [14.2 kB] Get:91 http://ftpmaster.internal/ubuntu/ natty/main libxi6 amd64 2:1.3-4 [55.9 kB] Get:92 http://ftpmaster.internal/ubuntu/ natty/main libxinerama1 amd64 2:1.1-3 [12.4 kB] Get:93 http://ftpmaster.internal/ubuntu/ natty/main libxrandr2 amd64 2:1.3.0-3 [28.4 kB] Get:94 http://ftpmaster.internal/ubuntu/ natty/main shared-mime-info amd64 0.71-3 [401 kB] Get:95 http://ftpmaster.internal/ubuntu/ natty/main libgtk2.0-0 amd64 2.22.0-0ubuntu3 [2285 kB] Get:96 http://ftpmaster.internal/ubuntu/ natty/main libjs-jquery all 1.4.2-2ubuntu1 [76.2 kB] Get:97 http://ftpmaster.internal/ubuntu/ natty/main liblapack3gf amd64 3.2.2-1 [4348 kB] Get:98 http://ftpmaster.internal/ubuntu/ natty/main libpython2.6 amd64 2.6.6-6ubuntu1 [1102 kB] Get:99 http://ftpmaster.internal/ubuntu/ natty/main python2.7-minimal amd64 2.7-9 [1661 kB] Get:100 http://ftpmaster.internal/ubuntu/ natty/main python2.7 amd64 2.7-9 [2616 kB] Get:101 http://ftpmaster.internal/ubuntu/ natty/main libpython2.7 amd64 2.7-9 [1197 kB] Get:102 http://ftpmaster.internal/ubuntu/ natty/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3ubuntu1 [194 kB] Get:103 http://ftpmaster.internal/ubuntu/ natty/main libssl-dev amd64 0.9.8o-1ubuntu4.1 [2160 kB] Get:104 http://ftpmaster.internal/ubuntu/ natty/universe libsvm2 amd64 2.91-2 [42.4 kB] Get:105 http://ftpmaster.internal/ubuntu/ natty/universe libsvm-dev amd64 2.91-2 [27.8 kB] Get:106 http://ftpmaster.internal/ubuntu/ natty/main libumfpack5.4.0 amd64 1:3.4.0-2ubuntu1 [383 kB] Get:107 http://ftpmaster.internal/ubuntu/ natty/main libxss1 amd64 1:1.2.0-2 [14.0 kB] Get:108 http://ftpmaster.internal/ubuntu/ natty/main python-all all 2.6.6-5ubuntu1 [920 B] Get:109 http://ftpmaster.internal/ubuntu/ natty/main python2.6-dev amd64 2.6.6-6ubuntu1 [4926 kB] Get:110 http://ftpmaster.internal/ubuntu/ natty/main python-dev all 2.6.6-5ubuntu1 [950 B] Get:111 http://ftpmaster.internal/ubuntu/ natty/main python2.7-dev amd64 2.7-9 [5270 kB] Get:112 http://ftpmaster.internal/ubuntu/ natty/main python-all-dev all 2.6.6-5ubuntu1 [934 B] Get:113 http://ftpmaster.internal/ubuntu/ natty/main python-dateutil all 1.4.1-3 [54.2 kB] Get:114 http://ftpmaster.internal/ubuntu/ natty/main python-roman all 0.7-2 [15.6 kB] Get:115 http://ftpmaster.internal/ubuntu/ natty/main python-docutils all 0.7-2 [1736 kB] Get:116 http://ftpmaster.internal/ubuntu/ natty/main python-markupsafe amd64 0.9.2-3 [13.1 kB] Get:117 http://ftpmaster.internal/ubuntu/ natty/main python-jinja2 amd64 2.5.5-1 [299 kB] Get:118 http://ftpmaster.internal/ubuntu/ natty/universe ttf-lyx all 1.6.7-1 [178 kB] Get:119 http://ftpmaster.internal/ubuntu/ natty/universe python-matplotlib-data all 0.99.3-1ubuntu1 [1026 kB] Get:120 http://ftpmaster.internal/ubuntu/ natty/main python-numpy amd64 1:1.4.1-5ubuntu1 [2992 kB] Get:121 http://ftpmaster.internal/ubuntu/ natty/universe python-pyparsing all 1.5.2-2 [608 kB] Get:122 http://ftpmaster.internal/ubuntu/ natty/universe python-tz all 2010b-1 [43.9 kB] Get:123 http://ftpmaster.internal/ubuntu/ natty/main tcl8.5 amd64 8.5.8-2build1 [1593 kB] Get:124 http://ftpmaster.internal/ubuntu/ natty/main tk8.5 amd64 8.5.8-1 [1168 kB] Get:125 http://ftpmaster.internal/ubuntu/ natty/universe python-matplotlib amd64 0.99.3-1ubuntu1 [1595 kB] Get:126 http://ftpmaster.internal/ubuntu/ natty/main python-pkg-resources all 0.6.14-5ubuntu1 [64.7 kB] Get:127 http://ftpmaster.internal/ubuntu/ natty/main python-nose all 0.11.1-1 [338 kB] Get:128 http://ftpmaster.internal/ubuntu/ natty/main python-pygments all 1.3.1+dfsg-1ubuntu1 [337 kB] Get:129 http://ftpmaster.internal/ubuntu/ natty/main python-setuptools all 0.6.14-5ubuntu1 [217 kB] Get:130 http://ftpmaster.internal/ubuntu/ natty/main python-sphinx all 1.0.1-1 [1175 kB] Get:131 http://ftpmaster.internal/ubuntu/ natty/main swig amd64 1.3.40-3ubuntu1 [1233 kB] Get:132 http://ftpmaster.internal/ubuntu/ natty/universe python-scipy amd64 0.7.2-2ubuntu1 [6200 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 75.8 MB in 3s (21.0 MB/s) Selecting previously deselected package x11-common. 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Unpacking python-scipy (from .../python-scipy_0.7.2-2ubuntu1_amd64.deb) ... Setting up x11-common (1:7.5+6ubuntu3) ... Setting up libmagic1 (5.03-5ubuntu1) ... Setting up file (5.03-5ubuntu1) ... Setting up libexpat1 (2.0.1-7ubuntu1) ... Setting up libnewt0.52 (0.52.11-2ubuntu1) ... Setting up libpopt0 (1.16-1) ... Setting up libsqlite3-0 (3.7.3-1) ... Setting up mime-support (3.48-1ubuntu2) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.6 (2.6.6-6ubuntu1) ... Setting up python (2.6.6-5ubuntu1) ... Setting up python-central (0.6.15ubuntu2) ... Setting up ucf (3.0025+nmu1) ... Setting up whiptail (0.52.11-2ubuntu1) ... Setting up bsdmainutils (8.0.11ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up ttf-dejavu-core (2.31-1) ... Setting up fontconfig-config (2.8.0-2ubuntu1) ... Setting up gettext-base (0.18.1.1-1ubuntu2) ... Setting up libffi5 (3.0.9-2ubuntu2) ... Setting up libgirepository1.0-1 (0.9.12-0ubuntu1) ... Setting up gir1.0-glib-2.0 (0.9.12-0ubuntu1) ... Setting up groff-base (1.20.1-10) ... Setting up libfreetype6 (2.4.2-2) ... Setting up libfontconfig1 (2.8.0-2ubuntu1) ... Setting up libpixman-1-0 (0.18.4-1) ... Setting up libxau6 (1:1.0.6-1) ... Setting up libxdmcp6 (1:1.0.3-2) ... Setting up libxcb1 (1.6-1) ... Setting up libx11-data (2:1.3.3-3ubuntu1) ... Setting up libx11-6 (2:1.3.3-3ubuntu1) ... Setting up libxcb-render0 (1.6-1) ... Setting up libxcb-shm0 (1.6-1) ... Setting up libxrender1 (1:0.9.6-1) ... Setting up libcairo2 (1.10.0-1ubuntu2) ... Setting up libxext6 (2:1.1.2-1) ... Setting up libxml2 (2.7.7.dfsg-4) ... Setting up man-db (2.5.7-6) ... Building database of manual pages ... Setting up python-support (1.0.10ubuntu1) ... Setting up python-cairo (1.8.8-1) ... Setting up python-gobject (2.21.5-0ubuntu3) ... Setting up cython (0.13-1) ... Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-3) ... Setting up gettext (0.18.1.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (8.0.0ubuntu1) ... Setting up defoma (0.11.11ubuntu1) ... Setting up fontconfig (2.8.0-2ubuntu1) ... Updating font configuration of fontconfig... Cleaning up category cid.. Cleaning up category truetype.. Cleaning up category type1.. Updating category type1.. Updating category truetype.. Updating category cid.. Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libcdt4 (2.26.3-5) ... Setting up libcgraph5 (2.26.3-5) ... Setting up libjpeg62 (6b1-1) ... Setting up libgd2-noxpm (2.0.36~rc1~dfsg-3.2ubuntu1) ... Setting up libgraph4 (2.26.3-5) ... Setting up libpango1.0-common (1.28.3-0ubuntu1) ... Cleaning up font configuration of pango... Updating font configuration of pango... Cleaning up category xfont.. Updating category xfont.. *** You don't have any defomized font packages. *** So we are trying to force to generate pangox.aliases... Setting up libdatrie1 (0.2.4-1) ... Setting up libthai-data (0.1.14-2) ... Setting up libthai0 (0.1.14-2) ... Setting up libxft2 (2.1.14-2ubuntu1) ... Setting up libpango1.0-0 (1.28.3-0ubuntu1) ... Setting up libpathplan4 (2.26.3-5) ... Setting up libxdot4 (2.26.3-5) ... Setting up libgvc5 (2.26.3-5) ... Setting up libgvpr1 (2.26.3-5) ... Setting up libice6 (2:1.0.6-1) ... Setting up libsm6 (2:1.1.1-1) ... Setting up libxt6 (1:1.0.7-1) ... Setting up libxmu6 (2:1.0.5-2) ... Setting up libxpm4 (1:3.5.8-1) ... Setting up libxaw7 (2:1.0.7-1) ... Setting up graphviz (2.26.3-5) ... Setting up python-pexpect (2.3-1build1) ... Setting up libamd2.2.0 (1:3.4.0-2ubuntu1) ... Setting up libatk1.0-0 (1.32.0-0ubuntu2) ... Setting up libavahi-common-data (0.6.27-2ubuntu3) ... Setting up libavahi-common3 (0.6.27-2ubuntu3) ... Setting up libavahi-client3 (0.6.27-2ubuntu3) ... Setting up libgfortran3 (4.5.1-9ubuntu1) ... Setting up libblas3gf (1.2-8) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up libcups2 (1.4.4-6ubuntu2.1) ... Setting up libexpat1-dev (2.0.1-7ubuntu1) ... Setting up libjasper1 (1.900.1-7) ... Setting up libtiff4 (3.9.4-5) ... Setting up libgdk-pixbuf2.0-0 (2.22.0-1ubuntu2) ... Setting up libgtk2.0-common (2.22.0-0ubuntu3) ... Setting up libxfixes3 (1:4.0.5-1) ... Setting up libxcomposite1 (1:0.4.2-1) ... Setting up libxcursor1 (1:1.1.10-2) ... Setting up libxdamage1 (1:1.1.3-1) ... Setting up libxi6 (2:1.3-4) ... Setting up libxinerama1 (2:1.1-3) ... Setting up libxrandr2 (2:1.3.0-3) ... Setting up shared-mime-info (0.71-3) ... Setting up libgtk2.0-0 (2.22.0-0ubuntu3) ... Setting up libjs-jquery (1.4.2-2ubuntu1) ... Setting up liblapack3gf (3.2.2-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libpython2.6 (2.6.6-6ubuntu1) ... Setting up python2.7-minimal (2.7-9) ... Linking and byte-compiling packages for runtime python2.7... Setting up python2.7 (2.7-9) ... Setting up libpython2.7 (2.7-9) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu1) ... Setting up libssl-dev (0.9.8o-1ubuntu4.1) ... Setting up libsvm2 (2.91-2) ... Setting up libsvm-dev (2.91-2) ... Setting up libumfpack5.4.0 (1:3.4.0-2ubuntu1) ... Setting up libxss1 (1:1.2.0-2) ... Setting up python-all (2.6.6-5ubuntu1) ... Setting up python2.6-dev (2.6.6-6ubuntu1) ... Setting up python-dev (2.6.6-5ubuntu1) ... Setting up python2.7-dev (2.7-9) ... Setting up python-all-dev (2.6.6-5ubuntu1) ... Setting up python-dateutil (1.4.1-3) ... Setting up python-roman (0.7-2) ... Setting up python-docutils (0.7-2) ... Setting up python-markupsafe (0.9.2-3) ... Setting up python-jinja2 (2.5.5-1) ... Setting up ttf-lyx (1.6.7-1) ... Updating fontconfig cache for /usr/share/fonts/truetype/ttf-lyx Setting up python-matplotlib-data (0.99.3-1ubuntu1) ... Setting up python-numpy (1:1.4.1-5ubuntu1) ... Setting up python-pyparsing (1.5.2-2) ... Setting up python-tz (2010b-1) ... Setting up tcl8.5 (8.5.8-2build1) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.8-1) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up python-pkg-resources (0.6.14-5ubuntu1) ... Setting up python-nose (0.11.1-1) ... Setting up python-pygments (1.3.1+dfsg-1ubuntu1) ... Setting up python-setuptools (0.6.14-5ubuntu1) ... Setting up python-sphinx (1.0.1-1) ... Setting up swig (1.3.40-3ubuntu1) ... Setting up python-scipy (0.7.2-2ubuntu1) ... Processing triggers for python-central ... Setting up ipython (0.10-2ubuntu1) ... Setting up python-matplotlib (0.99.3-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.12.1-0ubuntu7 make_3.81-8 dpkg-dev_1.15.8.5ubuntu1 gcc-4.5_4.5.1-9ubuntu1 g++-4.5_4.5.1-9ubuntu1 binutils_2.20.51.20101014-0ubuntu1 libstdc++6-4.5-dev_4.5.1-9ubuntu1 libstdc++6_4.5.1-9ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Aug 6 14:47:28 2010 UTC using DSA key ID 75C024C8 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./scikit-learn_0.4-3.dsc dpkg-source: info: extracting scikit-learn in scikit-learn-0.4 dpkg-source: info: unpacking scikit-learn_0.4.orig.tar.gz dpkg-source: info: unpacking scikit-learn_0.4-3.debian.tar.gz dpkg-source: info: applying up_workaround_numpy_cython_issue589652 dpkg-source: info: applying deb_cython_0.12.1 dpkg-source: info: applying deb_use_system_libraries dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package scikit-learn dpkg-buildpackage: source version 0.4-3 dpkg-source --before-build scikit-learn-0.4 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean Warning: Assuming default configuration (scikits/learn/feature_selection/{setup_feature_selection,setup}.py was not found) Warning: Assuming default configuration (scikits/learn/utils/{setup_utils,setup}.py was not found) Appending scikits.learn.datasets configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.datasets') Appending scikits.learn.feature_selection configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.feature_selection') Appending scikits.learn.utils configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.utils') blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib64 libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib libraries ptf77blas,ptcblas,atlas not found in /usr/lib64 libraries ptf77blas,ptcblas,atlas not found in /usr/lib NOT AVAILABLE atlas_blas_info: libraries f77blas,cblas,atlas not found in /usr/local/lib libraries f77blas,cblas,atlas not found in /usr/lib64 libraries f77blas,cblas,atlas not found in /usr/lib NOT AVAILABLE /usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1392: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. warnings.warn(AtlasNotFoundError.__doc__) blas_info: libraries blas not found in /usr/local/lib libraries blas not found in /usr/lib64 libraries blas not found in /usr/lib NOT AVAILABLE /usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1401: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) blas_src_info: NOT AVAILABLE /usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1404: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. warnings.warn(BlasSrcNotFoundError.__doc__) NOT AVAILABLE scikits/learn/setup.py:57: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) Warning: Assuming default configuration (scikits/learn/utils/{setup_utils,setup}.py was not found) Appending scikits.learn.utils configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.utils') Appending scikits.learn configuration to Ignoring attempt to set 'name' (from '' to 'scikits.learn') running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts.linux-x86_64-2.7' does not exist -- can't clean it Warning: Assuming default configuration (scikits/learn/feature_selection/{setup_feature_selection,setup}.py was not found) Warning: Assuming default configuration (scikits/learn/utils/{setup_utils,setup}.py was not found) Appending scikits.learn.datasets configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.datasets') Appending scikits.learn.feature_selection configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.feature_selection') Appending scikits.learn.utils configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.utils') blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib64 libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib libraries ptf77blas,ptcblas,atlas not found in /usr/lib64 libraries ptf77blas,ptcblas,atlas not found in /usr/lib NOT AVAILABLE atlas_blas_info: libraries f77blas,cblas,atlas not found in /usr/local/lib libraries f77blas,cblas,atlas not found in /usr/lib64 libraries f77blas,cblas,atlas not found in /usr/lib NOT AVAILABLE /usr/lib/pymodules/python2.6/numpy/distutils/system_info.py:1392: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. warnings.warn(AtlasNotFoundError.__doc__) blas_info: libraries blas not found in /usr/local/lib libraries blas not found in /usr/lib64 libraries blas not found in /usr/lib NOT AVAILABLE /usr/lib/pymodules/python2.6/numpy/distutils/system_info.py:1401: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) blas_src_info: NOT AVAILABLE /usr/lib/pymodules/python2.6/numpy/distutils/system_info.py:1404: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. warnings.warn(BlasSrcNotFoundError.__doc__) NOT AVAILABLE scikits/learn/setup.py:57: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) Warning: Assuming default configuration (scikits/learn/utils/{setup_utils,setup}.py was not found) Appending scikits.learn.utils configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.utils') Appending scikits.learn configuration to Ignoring attempt to set 'name' (from '' to 'scikits.learn') running clean 'build/lib.linux-x86_64-2.6' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts.linux-x86_64-2.6' does not exist -- can't clean it debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/scikit-learn-0.4' rm -rf build doc/_build doc/auto_examples *-stamp scikits.learn.egg-info scikits/learn/datasets/__config__.py dh_clean make[1]: Leaving directory `/build/buildd/scikit-learn-0.4' debian/rules build dh build dh_testdir dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/scikit-learn-0.4' dh_auto_build Warning: Assuming default configuration (scikits/learn/feature_selection/{setup_feature_selection,setup}.py was not found) Warning: Assuming default configuration (scikits/learn/utils/{setup_utils,setup}.py was not found) Appending scikits.learn.datasets configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.datasets') Appending scikits.learn.feature_selection configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.feature_selection') Appending scikits.learn.utils configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.utils') blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib64 libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib libraries ptf77blas,ptcblas,atlas not found in /usr/lib64 libraries ptf77blas,ptcblas,atlas not found in /usr/lib NOT AVAILABLE atlas_blas_info: libraries f77blas,cblas,atlas not found in /usr/local/lib libraries f77blas,cblas,atlas not found in /usr/lib64 libraries f77blas,cblas,atlas not found in /usr/lib NOT AVAILABLE /usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1392: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. warnings.warn(AtlasNotFoundError.__doc__) blas_info: libraries blas not found in /usr/local/lib libraries blas not found in /usr/lib64 libraries blas not found in /usr/lib NOT AVAILABLE /usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1401: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) blas_src_info: NOT AVAILABLE /usr/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1404: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. warnings.warn(BlasSrcNotFoundError.__doc__) NOT AVAILABLE scikits/learn/setup.py:57: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) Warning: Assuming default configuration (scikits/learn/utils/{setup_utils,setup}.py was not found) Appending scikits.learn.utils configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.utils') Appending scikits.learn configuration to Ignoring attempt to set 'name' (from '' to 'scikits.learn') running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building library "blas" sources building library "cblas" sources building extension "scikits.learn._libsvm" sources building extension "scikits.learn._liblinear" sources building extension "scikits.learn._minilearn" sources building extension "scikits.learn.ball_tree" sources building extension "scikits.learn.cd_fast" sources building data_files sources build_src: building npy-pkg config files running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/scikits creating build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/__init__.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/cross_val.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/glm.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/gmm.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/lda.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/logistic.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/metrics.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/naive_bayes.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/neighbors.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/setup.py -> build/lib.linux-x86_64-2.7/scikits/learn copying scikits/learn/svm.py -> build/lib.linux-x86_64-2.7/scikits/learn creating build/lib.linux-x86_64-2.7/scikits/learn/datasets copying scikits/learn/datasets/__init__.py -> build/lib.linux-x86_64-2.7/scikits/learn/datasets copying scikits/learn/datasets/base.py -> build/lib.linux-x86_64-2.7/scikits/learn/datasets copying scikits/learn/datasets/samples_generator.py -> build/lib.linux-x86_64-2.7/scikits/learn/datasets copying scikits/learn/datasets/setup.py -> build/lib.linux-x86_64-2.7/scikits/learn/datasets creating build/lib.linux-x86_64-2.7/scikits/learn/feature_selection copying scikits/learn/feature_selection/__init__.py -> build/lib.linux-x86_64-2.7/scikits/learn/feature_selection copying scikits/learn/feature_selection/univariate_selection.py -> build/lib.linux-x86_64-2.7/scikits/learn/feature_selection creating build/lib.linux-x86_64-2.7/scikits/learn/utils copying scikits/learn/utils/__init__.py -> build/lib.linux-x86_64-2.7/scikits/learn/utils copying scikits/learn/utils/extmath.py -> build/lib.linux-x86_64-2.7/scikits/learn/utils copying scikits/learn/utils/preprocessing.py -> build/lib.linux-x86_64-2.7/scikits/learn/utils running build_clib customize UnixCCompiler customize UnixCCompiler using build_clib building 'blas' library compiling C sources C compiler: gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/scikits creating build/temp.linux-x86_64-2.7/scikits/learn creating build/temp.linux-x86_64-2.7/scikits/learn/src creating build/temp.linux-x86_64-2.7/scikits/learn/src/blas compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -c' gcc: scikits/learn/src/blas/daxpy.c gcc: scikits/learn/src/blas/dnrm2.c gcc: scikits/learn/src/blas/dscal.c gcc: scikits/learn/src/blas/ddot.c ar: adding 4 object files to build/temp.linux-x86_64-2.7/libblas.a building 'cblas' library compiling C sources C compiler: gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC creating build/temp.linux-x86_64-2.7/scikits/learn/src/cblas compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -c' gcc: scikits/learn/src/cblas/cblas_dscal.c gcc: scikits/learn/src/cblas/ATL_dreftpsvUNU.c gcc: scikits/learn/src/cblas/ATL_dreftpsvUTU.c gcc: scikits/learn/src/cblas/ATL_dtpsv.c scikits/learn/src/cblas/ATL_dtpsv.c: In function 'ATL_dtpsv': scikits/learn/src/cblas/ATL_dtpsv.c:164:13: warning: implicit declaration of function 'ATL_dreftpsvUNN' scikits/learn/src/cblas/ATL_dtpsv.c:168:13: warning: implicit declaration of function 'ATL_dreftpsvUNU' scikits/learn/src/cblas/ATL_dtpsv.c:175:13: warning: implicit declaration of function 'ATL_dreftpsvUTN' scikits/learn/src/cblas/ATL_dtpsv.c:179:13: warning: implicit declaration of function 'ATL_dreftpsvUTU' scikits/learn/src/cblas/ATL_dtpsv.c:189:13: warning: implicit declaration of function 'ATL_dreftpsvLNN' scikits/learn/src/cblas/ATL_dtpsv.c:193:13: warning: implicit declaration of function 'ATL_dreftpsvLNU' scikits/learn/src/cblas/ATL_dtpsv.c:200:13: warning: implicit declaration of function 'ATL_dreftpsvLTN' scikits/learn/src/cblas/ATL_dtpsv.c:204:13: warning: implicit declaration of function 'ATL_dreftpsvLTU' gcc: scikits/learn/src/cblas/cblas_xerbla.c scikits/learn/src/cblas/cblas_xerbla.c: In function 'cblas_xerbla': scikits/learn/src/cblas/cblas_xerbla.c:52:4: warning: implicit declaration of function 'exit' scikits/learn/src/cblas/cblas_xerbla.c:52:4: warning: incompatible implicit declaration of built-in function 'exit' gcc: scikits/learn/src/cblas/cblas_daxpy.c gcc: scikits/learn/src/cblas/cblas_dnrm2.c gcc: scikits/learn/src/cblas/ATL_dreftpsvUTN.c gcc: scikits/learn/src/cblas/cblas_errprn.c gcc: scikits/learn/src/cblas/cblas_dtpsv.c scikits/learn/src/cblas/cblas_dtpsv.c: In function 'cblas_dtpsv': scikits/learn/src/cblas/cblas_dtpsv.c:69:7: warning: implicit declaration of function 'cblas_xerbla' scikits/learn/src/cblas/cblas_dtpsv.c:75:7: warning: implicit declaration of function 'ATL_dtpsv' gcc: scikits/learn/src/cblas/ATL_dreftpsvLTU.c gcc: scikits/learn/src/cblas/ATL_dreftpsvLNU.c gcc: scikits/learn/src/cblas/cblas_ddot.c gcc: scikits/learn/src/cblas/ATL_dreftpsvUNN.c gcc: scikits/learn/src/cblas/ATL_dreftpsvLNN.c gcc: scikits/learn/src/cblas/ATL_dreftpsvLTN.c ar: adding 16 object files to build/temp.linux-x86_64-2.7/libcblas.a running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext customize UnixCCompiler customize UnixCCompiler using build_ext building 'scikits.learn._libsvm' extension compiling C sources C compiler: gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/libsvm-2.0/libsvm -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: scikits/learn/src/_libsvm.c In file included from scikits/learn/src/_libsvm.c:161:0: scikits/learn/src/libsvm_helper.c: In function 'copy_SV': scikits/learn/src/libsvm_helper.c:327:9: warning: unused variable 'fsig' scikits/learn/src/libsvm_helper.c:326:9: warning: unused variable 'step' scikits/learn/src/libsvm_helper.c: In function 'copy_predict_values': scikits/learn/src/libsvm_helper.c:409:12: warning: unused variable 'm' scikits/learn/src/_libsvm.c: In function '__pyx_pf_7_libsvm_train_wrap': scikits/learn/src/_libsvm.c:1261:21: warning: assignment discards qualifiers from pointer target type scikits/learn/src/_libsvm.c:1370:3: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1370:3: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1408:3: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1408:3: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1452:3: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1452:3: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1499:5: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1499:5: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1541:5: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1541:5: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1581:3: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c:1581:3: warning: dereferencing type-punned pointer will break strict-aliasing rules scikits/learn/src/_libsvm.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: '_import_array' defined but not used /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: '_import_umath' defined but not used scikits/learn/src/_libsvm.c:6621:18: warning: '__Pyx_UnpackItem' defined but not used scikits/learn/src/_libsvm.c:6631:12: warning: '__Pyx_EndUnpack' defined but not used gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.7/scikits/learn/src/_libsvm.o -Lbuild/temp.linux-x86_64-2.7 -lsvm -o build/lib.linux-x86_64-2.7/scikits/learn/_libsvm.so building 'scikits.learn._liblinear' extension compiling C sources C compiler: gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC compile options: '-Iscikits/learn/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: scikits/learn/src/_liblinear.c In file included from scikits/learn/src/_liblinear.c:161:0: scikits/learn/src/liblinear_helper.c: In function 'copy_prob_predict': scikits/learn/src/liblinear_helper.c:177:12: warning: unused variable 'temp' scikits/learn/src/liblinear_helper.c:174:13: warning: unused variable 't' scikits/learn/src/_liblinear.c: In function '__pyx_pf_10_liblinear_train_wrap': scikits/learn/src/_liblinear.c:999:21: warning: assignment discards qualifiers from pointer target type scikits/learn/src/_liblinear.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: '_import_array' defined but not used /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: '_import_umath' defined but not used scikits/learn/src/_liblinear.c:4998:18: warning: '__Pyx_UnpackItem' defined but not used scikits/learn/src/_liblinear.c:5008:12: warning: '__Pyx_EndUnpack' defined but not used compiling C++ sources C compiler: g++ -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fPIC compile options: '-Iscikits/learn/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' g++: scikits/learn/src/tron.cpp g++: scikits/learn/src/linear.cpp scikits/learn/src/linear.cpp: In function 'model* load_model(const char*)': scikits/learn/src/linear.cpp:1832:24: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1835:25: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1855:29: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1860:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1865:26: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1877:38: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1904:44: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1905:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp: In function 'void _ZL9train_onePK7problemPK9parameterPddd.clone.1(const problem*, const int, const double, double*, double, double)': scikits/learn/src/linear.cpp:918:9: warning: 'loss_old' may be used uninitialized in this function scikits/learn/src/linear.cpp:916:9: warning: 'Gmax_init' may be used uninitialized in this function scikits/learn/src/linear.cpp:1196:9: warning: 'Gmax_init' may be used uninitialized in this function g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.7/scikits/learn/src/_liblinear.o build/temp.linux-x86_64-2.7/scikits/learn/src/linear.o build/temp.linux-x86_64-2.7/scikits/learn/src/tron.o -Lbuild/temp.linux-x86_64-2.7 -lblas -o build/lib.linux-x86_64-2.7/scikits/learn/_liblinear.so building 'scikits.learn._minilearn' extension compiling C sources C compiler: gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC creating build/temp.linux-x86_64-2.7/scikits/learn/src/minilearn compile options: '-Iscikits/learn/src/minilearn -Iscikits/learn/src/cblas -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' extra options: '-std=c99' gcc: scikits/learn/src/minilearn/_minilearn.c /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: '_import_array' defined but not used /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: '_import_umath' defined but not used scikits/learn/src/minilearn/_minilearn.c:3747:18: warning: '__Pyx_UnpackItem' defined but not used scikits/learn/src/minilearn/_minilearn.c:3757:12: warning: '__Pyx_EndUnpack' defined but not used gcc: scikits/learn/src/minilearn/lars.c scikits/learn/src/minilearn/lars.c: In function 'lars_fit': scikits/learn/src/minilearn/lars.c:257:21: warning: implicit declaration of function 'printf' scikits/learn/src/minilearn/lars.c:257:21: warning: incompatible implicit declaration of built-in function 'printf' gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.7/scikits/learn/src/minilearn/lars.o build/temp.linux-x86_64-2.7/scikits/learn/src/minilearn/_minilearn.o -Lbuild/temp.linux-x86_64-2.7 -lcblas -o build/lib.linux-x86_64-2.7/scikits/learn/_minilearn.so building 'scikits.learn.ball_tree' extension compiling C++ sources C compiler: g++ -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' g++: scikits/learn/src/BallTree.cpp scikits/learn/src/BallTree.cpp: In function 'int BallTree_init(PyBallTreeObject*, PyObject*, PyObject*)': scikits/learn/src/BallTree.cpp:60:49: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:60:49: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: In function 'PyObject* BallTree_query(PyBallTreeObject*, PyObject*, PyObject*)': scikits/learn/src/BallTree.cpp:121:61: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:121:61: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:121:61: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: In function 'PyObject* BallTree_queryball(PyBallTreeObject*, PyObject*, PyObject*)': scikits/learn/src/BallTree.cpp:300:56: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:300:56: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:300:56: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: At global scope: scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: In function 'PyObject* BallTree_knn_brute(PyObject*, PyObject*, PyObject*)': scikits/learn/src/BallTree.cpp:609:48: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:609:48: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:609:48: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: In function 'void initball_tree()': scikits/learn/src/BallTree.cpp:813:3: warning: dereferencing type-punned pointer will break strict-aliasing rules g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.7/scikits/learn/src/BallTree.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/scikits/learn/ball_tree.so building 'scikits.learn.cd_fast' extension compiling C sources C compiler: gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: scikits/learn/src/cd_fast.c /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: '_import_array' defined but not used /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: '_import_umath' defined but not used scikits/learn/src/cd_fast.c:5616:18: warning: '__Pyx_UnpackItem' defined but not used scikits/learn/src/cd_fast.c:5626:12: warning: '__Pyx_EndUnpack' defined but not used scikits/learn/src/cd_fast.c: In function '__pyx_pf_7cd_fast_lasso_coordinate_descent': scikits/learn/src/cd_fast.c:925:10: warning: '__pyx_v_gap' may be used uninitialized in this function gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.7/scikits/learn/src/cd_fast.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/scikits/learn/cd_fast.so running scons Warning: Assuming default configuration (scikits/learn/feature_selection/{setup_feature_selection,setup}.py was not found) Warning: Assuming default configuration (scikits/learn/utils/{setup_utils,setup}.py was not found) Appending scikits.learn.datasets configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.datasets') Appending scikits.learn.feature_selection configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.feature_selection') Appending scikits.learn.utils configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.utils') blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib64 libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib libraries ptf77blas,ptcblas,atlas not found in /usr/lib64 libraries ptf77blas,ptcblas,atlas not found in /usr/lib NOT AVAILABLE atlas_blas_info: libraries f77blas,cblas,atlas not found in /usr/local/lib libraries f77blas,cblas,atlas not found in /usr/lib64 libraries f77blas,cblas,atlas not found in /usr/lib NOT AVAILABLE /usr/lib/pymodules/python2.6/numpy/distutils/system_info.py:1392: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. warnings.warn(AtlasNotFoundError.__doc__) blas_info: libraries blas not found in /usr/local/lib libraries blas not found in /usr/lib64 libraries blas not found in /usr/lib NOT AVAILABLE /usr/lib/pymodules/python2.6/numpy/distutils/system_info.py:1401: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) blas_src_info: NOT AVAILABLE /usr/lib/pymodules/python2.6/numpy/distutils/system_info.py:1404: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. warnings.warn(BlasSrcNotFoundError.__doc__) NOT AVAILABLE scikits/learn/setup.py:57: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. warnings.warn(BlasNotFoundError.__doc__) Warning: Assuming default configuration (scikits/learn/utils/{setup_utils,setup}.py was not found) Appending scikits.learn.utils configuration to scikits.learn Ignoring attempt to set 'name' (from 'scikits.learn' to 'scikits.learn.utils') Appending scikits.learn configuration to Ignoring attempt to set 'name' (from '' to 'scikits.learn') running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building library "blas" sources building library "cblas" sources building extension "scikits.learn._libsvm" sources building extension "scikits.learn._liblinear" sources building extension "scikits.learn._minilearn" sources building extension "scikits.learn.ball_tree" sources building extension "scikits.learn.cd_fast" sources building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.linux-x86_64-2.6 creating build/lib.linux-x86_64-2.6/scikits creating build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/__init__.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/cross_val.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/glm.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/gmm.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/lda.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/logistic.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/metrics.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/naive_bayes.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/neighbors.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/setup.py -> build/lib.linux-x86_64-2.6/scikits/learn copying scikits/learn/svm.py -> build/lib.linux-x86_64-2.6/scikits/learn creating build/lib.linux-x86_64-2.6/scikits/learn/datasets copying scikits/learn/datasets/__init__.py -> build/lib.linux-x86_64-2.6/scikits/learn/datasets copying scikits/learn/datasets/base.py -> build/lib.linux-x86_64-2.6/scikits/learn/datasets copying scikits/learn/datasets/samples_generator.py -> build/lib.linux-x86_64-2.6/scikits/learn/datasets copying scikits/learn/datasets/setup.py -> build/lib.linux-x86_64-2.6/scikits/learn/datasets creating build/lib.linux-x86_64-2.6/scikits/learn/feature_selection copying scikits/learn/feature_selection/__init__.py -> build/lib.linux-x86_64-2.6/scikits/learn/feature_selection copying scikits/learn/feature_selection/univariate_selection.py -> build/lib.linux-x86_64-2.6/scikits/learn/feature_selection creating build/lib.linux-x86_64-2.6/scikits/learn/utils copying scikits/learn/utils/__init__.py -> build/lib.linux-x86_64-2.6/scikits/learn/utils copying scikits/learn/utils/extmath.py -> build/lib.linux-x86_64-2.6/scikits/learn/utils copying scikits/learn/utils/preprocessing.py -> build/lib.linux-x86_64-2.6/scikits/learn/utils running build_clib customize UnixCCompiler customize UnixCCompiler using build_clib building 'blas' library compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC creating build/temp.linux-x86_64-2.6 creating build/temp.linux-x86_64-2.6/scikits creating build/temp.linux-x86_64-2.6/scikits/learn creating build/temp.linux-x86_64-2.6/scikits/learn/src creating build/temp.linux-x86_64-2.6/scikits/learn/src/blas compile options: '-I/usr/lib/pymodules/python2.6/numpy/core/include -c' gcc: scikits/learn/src/blas/ddot.c gcc: scikits/learn/src/blas/dscal.c gcc: scikits/learn/src/blas/daxpy.c gcc: scikits/learn/src/blas/dnrm2.c ar: adding 4 object files to build/temp.linux-x86_64-2.6/libblas.a building 'cblas' library compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC creating build/temp.linux-x86_64-2.6/scikits/learn/src/cblas compile options: '-I/usr/lib/pymodules/python2.6/numpy/core/include -c' gcc: scikits/learn/src/cblas/cblas_ddot.c gcc: scikits/learn/src/cblas/cblas_errprn.c gcc: scikits/learn/src/cblas/ATL_dreftpsvLNU.c gcc: scikits/learn/src/cblas/ATL_dreftpsvLTU.c gcc: scikits/learn/src/cblas/cblas_dnrm2.c gcc: scikits/learn/src/cblas/cblas_dtpsv.c scikits/learn/src/cblas/cblas_dtpsv.c: In function 'cblas_dtpsv': scikits/learn/src/cblas/cblas_dtpsv.c:69:7: warning: implicit declaration of function 'cblas_xerbla' scikits/learn/src/cblas/cblas_dtpsv.c:75:7: warning: implicit declaration of function 'ATL_dtpsv' gcc: scikits/learn/src/cblas/cblas_dscal.c gcc: scikits/learn/src/cblas/cblas_daxpy.c gcc: scikits/learn/src/cblas/ATL_dreftpsvLTN.c gcc: scikits/learn/src/cblas/ATL_dreftpsvUTU.c gcc: scikits/learn/src/cblas/ATL_dtpsv.c scikits/learn/src/cblas/ATL_dtpsv.c: In function 'ATL_dtpsv': scikits/learn/src/cblas/ATL_dtpsv.c:164:13: warning: implicit declaration of function 'ATL_dreftpsvUNN' scikits/learn/src/cblas/ATL_dtpsv.c:168:13: warning: implicit declaration of function 'ATL_dreftpsvUNU' scikits/learn/src/cblas/ATL_dtpsv.c:175:13: warning: implicit declaration of function 'ATL_dreftpsvUTN' scikits/learn/src/cblas/ATL_dtpsv.c:179:13: warning: implicit declaration of function 'ATL_dreftpsvUTU' scikits/learn/src/cblas/ATL_dtpsv.c:189:13: warning: implicit declaration of function 'ATL_dreftpsvLNN' scikits/learn/src/cblas/ATL_dtpsv.c:193:13: warning: implicit declaration of function 'ATL_dreftpsvLNU' scikits/learn/src/cblas/ATL_dtpsv.c:200:13: warning: implicit declaration of function 'ATL_dreftpsvLTN' scikits/learn/src/cblas/ATL_dtpsv.c:204:13: warning: implicit declaration of function 'ATL_dreftpsvLTU' gcc: scikits/learn/src/cblas/ATL_dreftpsvUNU.c gcc: scikits/learn/src/cblas/cblas_xerbla.c scikits/learn/src/cblas/cblas_xerbla.c: In function 'cblas_xerbla': scikits/learn/src/cblas/cblas_xerbla.c:52:4: warning: implicit declaration of function 'exit' scikits/learn/src/cblas/cblas_xerbla.c:52:4: warning: incompatible implicit declaration of built-in function 'exit' gcc: scikits/learn/src/cblas/ATL_dreftpsvLNN.c gcc: scikits/learn/src/cblas/ATL_dreftpsvUNN.c gcc: scikits/learn/src/cblas/ATL_dreftpsvUTN.c ar: adding 16 object files to build/temp.linux-x86_64-2.6/libcblas.a running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext customize UnixCCompiler customize UnixCCompiler using build_ext building 'scikits.learn._libsvm' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC compile options: '-I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/libsvm-2.0/libsvm -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c' gcc: scikits/learn/src/_libsvm.c In file included from scikits/learn/src/_libsvm.c:161:0: scikits/learn/src/libsvm_helper.c: In function 'copy_SV': scikits/learn/src/libsvm_helper.c:327:9: warning: unused variable 'fsig' scikits/learn/src/libsvm_helper.c:326:9: warning: unused variable 'step' scikits/learn/src/libsvm_helper.c: In function 'copy_predict_values': scikits/learn/src/libsvm_helper.c:409:12: warning: unused variable 'm' scikits/learn/src/_libsvm.c: In function '__pyx_pf_7_libsvm_train_wrap': scikits/learn/src/_libsvm.c:1261:21: warning: assignment discards qualifiers from pointer target type scikits/learn/src/_libsvm.c: At top level: /usr/lib/pymodules/python2.6/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: '_import_array' defined but not used /usr/lib/pymodules/python2.6/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: '_import_umath' defined but not used scikits/learn/src/_libsvm.c:6621:18: warning: '__Pyx_UnpackItem' defined but not used scikits/learn/src/_libsvm.c:6631:12: warning: '__Pyx_EndUnpack' defined but not used gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.6/scikits/learn/src/_libsvm.o -Lbuild/temp.linux-x86_64-2.6 -lsvm -o build/lib.linux-x86_64-2.6/scikits/learn/_libsvm.so building 'scikits.learn._liblinear' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC compile options: '-Iscikits/learn/src -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c' gcc: scikits/learn/src/_liblinear.c In file included from scikits/learn/src/_liblinear.c:161:0: scikits/learn/src/liblinear_helper.c: In function 'copy_prob_predict': scikits/learn/src/liblinear_helper.c:177:12: warning: unused variable 'temp' scikits/learn/src/liblinear_helper.c:174:13: warning: unused variable 't' scikits/learn/src/_liblinear.c: In function '__pyx_pf_10_liblinear_train_wrap': scikits/learn/src/_liblinear.c:999:21: warning: assignment discards qualifiers from pointer target type scikits/learn/src/_liblinear.c: At top level: /usr/lib/pymodules/python2.6/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: '_import_array' defined but not used /usr/lib/pymodules/python2.6/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: '_import_umath' defined but not used scikits/learn/src/_liblinear.c:4998:18: warning: '__Pyx_UnpackItem' defined but not used scikits/learn/src/_liblinear.c:5008:12: warning: '__Pyx_EndUnpack' defined but not used compiling C++ sources C compiler: g++ -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fPIC compile options: '-Iscikits/learn/src -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c' g++: scikits/learn/src/tron.cpp g++: scikits/learn/src/linear.cpp scikits/learn/src/linear.cpp: In function 'model* load_model(const char*)': scikits/learn/src/linear.cpp:1832:24: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1835:25: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1855:29: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1860:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1865:26: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1877:38: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1904:44: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp:1905:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result scikits/learn/src/linear.cpp: In function 'void _ZL9train_onePK7problemPK9parameterPddd.clone.1(const problem*, const int, const double, double*, double, double)': scikits/learn/src/linear.cpp:918:9: warning: 'loss_old' may be used uninitialized in this function scikits/learn/src/linear.cpp:916:9: warning: 'Gmax_init' may be used uninitialized in this function scikits/learn/src/linear.cpp:1196:9: warning: 'Gmax_init' may be used uninitialized in this function g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.6/scikits/learn/src/_liblinear.o build/temp.linux-x86_64-2.6/scikits/learn/src/linear.o build/temp.linux-x86_64-2.6/scikits/learn/src/tron.o -Lbuild/temp.linux-x86_64-2.6 -lblas -o build/lib.linux-x86_64-2.6/scikits/learn/_liblinear.so building 'scikits.learn._minilearn' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC creating build/temp.linux-x86_64-2.6/scikits/learn/src/minilearn compile options: '-Iscikits/learn/src/minilearn -Iscikits/learn/src/cblas -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c' extra options: '-std=c99' gcc: scikits/learn/src/minilearn/_minilearn.c /usr/lib/pymodules/python2.6/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: '_import_array' defined but not used /usr/lib/pymodules/python2.6/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: '_import_umath' defined but not used scikits/learn/src/minilearn/_minilearn.c:3747:18: warning: '__Pyx_UnpackItem' defined but not used scikits/learn/src/minilearn/_minilearn.c:3757:12: warning: '__Pyx_EndUnpack' defined but not used gcc: scikits/learn/src/minilearn/lars.c scikits/learn/src/minilearn/lars.c: In function 'lars_fit': scikits/learn/src/minilearn/lars.c:257:21: warning: implicit declaration of function 'printf' scikits/learn/src/minilearn/lars.c:257:21: warning: incompatible implicit declaration of built-in function 'printf' gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.6/scikits/learn/src/minilearn/lars.o build/temp.linux-x86_64-2.6/scikits/learn/src/minilearn/_minilearn.o -Lbuild/temp.linux-x86_64-2.6 -lcblas -o build/lib.linux-x86_64-2.6/scikits/learn/_minilearn.so building 'scikits.learn.ball_tree' extension compiling C++ sources C compiler: g++ -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fPIC compile options: '-I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c' g++: scikits/learn/src/BallTree.cpp scikits/learn/src/BallTree.cpp: In function 'int BallTree_init(PyBallTreeObject*, PyObject*, PyObject*)': scikits/learn/src/BallTree.cpp:60:49: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:60:49: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: In function 'PyObject* BallTree_query(PyBallTreeObject*, PyObject*, PyObject*)': scikits/learn/src/BallTree.cpp:121:61: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:121:61: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:121:61: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: In function 'PyObject* BallTree_queryball(PyBallTreeObject*, PyObject*, PyObject*)': scikits/learn/src/BallTree.cpp:300:56: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:300:56: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:300:56: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: At global scope: scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:465:1: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp: In function 'PyObject* BallTree_knn_brute(PyObject*, PyObject*, PyObject*)': scikits/learn/src/BallTree.cpp:609:48: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:609:48: warning: deprecated conversion from string constant to 'char*' scikits/learn/src/BallTree.cpp:609:48: warning: deprecated conversion from string constant to 'char*' g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.6/scikits/learn/src/BallTree.o -Lbuild/temp.linux-x86_64-2.6 -o build/lib.linux-x86_64-2.6/scikits/learn/ball_tree.so building 'scikits.learn.cd_fast' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC compile options: '-I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/include/python2.6 -c' gcc: scikits/learn/src/cd_fast.c /usr/lib/pymodules/python2.6/numpy/core/include/numpy/__multiarray_api.h:1187:1: warning: '_import_array' defined but not used /usr/lib/pymodules/python2.6/numpy/core/include/numpy/__ufunc_api.h:196:1: warning: '_import_umath' defined but not used scikits/learn/src/cd_fast.c:5616:18: warning: '__Pyx_UnpackItem' defined but not used scikits/learn/src/cd_fast.c:5626:12: warning: '__Pyx_EndUnpack' defined but not used scikits/learn/src/cd_fast.c: In function '__pyx_pf_7cd_fast_lasso_coordinate_descent': scikits/learn/src/cd_fast.c:925:10: warning: '__pyx_v_gap' may be used uninitialized in this function gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-x86_64-2.6/scikits/learn/src/cd_fast.o -Lbuild/temp.linux-x86_64-2.6 -o build/lib.linux-x86_64-2.6/scikits/learn/cd_fast.so running scons : # Build Documentation export PYTHONPATH=`/bin/ls -d $PWD/build/lib.*2.6` MPLCONFIGDIR=/build/buildd/scikit-learn-0.4/build HOME=/build/buildd/scikit-learn-0.4/build; \ cd doc; /usr/bin/make html make[2]: Entering directory `/build/buildd/scikit-learn-0.4/doc' sphinx-build -b html -d _build/doctrees . _build/html Making output directory... Running Sphinx v1.0.1 Exception occurred: File "/build/buildd/scikit-learn-0.4/doc/sphinxext/numpydoc.py", line 136, in get_directive raise RuntimeError("No directive named '%s' found" % name) RuntimeError: No directive named 'function' found The full traceback has been saved in /tmp/sphinx-err-KJpe6i.log, if you want to report the issue to the developers. Please also report this if it was a user error, so that a better error message can be provided next time. Either send bugs to the mailing list at , or report them in the tracker at . Thanks! make[2]: *** [html] Error 1 make[2]: Leaving directory `/build/buildd/scikit-learn-0.4/doc' make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory `/build/buildd/scikit-learn-0.4' make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ****************************************************************************** Build finished at 20101022-1439 FAILED [dpkg-buildpackage died] Purging chroot-autobuild/build/buildd/scikit-learn-0.4 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libpathplan4 libavahi-common3 libx11-data fontconfig-config gettext file zlib1g-dev libxaw7 libcairo2 libgirepository1.0-1 python-nose x11-common libgvc5 python-numpy python2.6 python-matplotlib python-dateutil libxi6 libjpeg62 libxcursor1 libxdot4 python-pygments python-setuptools libumfpack5.4.0 libexpat1-dev libgdk-pixbuf2.0-0 libjasper1 libfontconfig1 libblas3gf libgfortran3 python-scipy python-cairo libx11-6 tk8.5 libgd2-noxpm libnewt0.52 libpango1.0-common libxdamage1 ttf-lyx libxt6 libffi5 libxss1 python-jinja2 swig libxml2 libgvpr1 libthai-data python-all libsvm2 libice6 intltool-debian python2.7-dev libavahi-client3 libxrender1 libpython2.7 python-markupsafe libcups2 libjs-jquery libdatrie1 libavahi-common-data libxft2 libxext6 libsqlite3-0 libxinerama1 libxmu6 python-docutils defoma ttf-dejavu-core fontconfig libcgraph5 libxpm4 libcroco3 python-pexpect libpopt0 libsvm-dev python-support libfreetype6 python-tz graphviz libatk1.0-0 libgtk2.0-0 python2.7 liblapack3gf libxcb1 html2text debhelper libxrandr2 python2.6-dev libthai0 python python-roman tcl8.5 libmagic1 python-gobject libtiff4 libxcb-shm0 libexpat1 libssl-dev python-sphinx libcdt4 bsdmainutils libamd2.2.0 libxau6 libxcomposite1 mime-support whiptail gir1.0-glib-2.0 libxdmcp6 libxfixes3 shared-mime-info po-debconf python2.7-minimal python-pkg-resources libpython2.6 python-all-dev man-db python-dev libpixman-1-0 libgraph4 cython libpango1.0-0 ucf libgtk2.0-common gettext-base python-matplotlib-data libunistring0 libsm6 python-central libxcb-render0 ipython python-pyparsing (Reading database ... 25437 files and directories currently installed.) Removing python-nose ... Removing python-matplotlib ... Removing python-dateutil ... Removing python-setuptools ... Removing python-scipy ... Removing python-cairo ... Removing tk8.5 ... Purging configuration files for tk8.5 ... Removing libxss1 ... Purging configuration files for libxss1 ... Removing swig ... Removing libsvm-dev ... Removing python-tz ... Removing graphviz ... Purging configuration files for graphviz ... Removing libgtk2.0-0 ... Purging configuration files for libgtk2.0-0 ... dpkg: warning: while removing libgtk2.0-0, directory '/usr/lib/gtk-2.0/2.10.0' not empty so not removed. dpkg: warning: while removing libgtk2.0-0, directory '/usr/lib/gtk-2.0' not empty so not removed. Removing debhelper ... Removing libxrandr2 ... Purging configuration files for libxrandr2 ... Removing tcl8.5 ... Purging configuration files for tcl8.5 ... Removing python-gobject ... Purging configuration files for python-gobject ... Removing python-sphinx ... Removing libxcomposite1 ... 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'/usr/lib/python2.7/dist-packages/numpy/random' not empty so not removed. dpkg: warning: while removing python-numpy, directory '/usr/lib/python2.7/dist-packages/numpy/polynomial/tests' not empty so not removed. dpkg: warning: while removing python-numpy, directory '/usr/lib/python2.7/dist-packages/numpy/polynomial' not empty so not removed. dpkg: warning: while removing python-numpy, directory '/usr/lib/python2.7/dist-packages/numpy' not empty so not removed. 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Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20101022-1440 Build needed 00:00:57, 16236k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '51a7f196d7b169451dfea927f02f6c91a8ac4719'] Scanning for processes to kill in build /home/buildd/build-51a7f196d7b169451dfea927f02f6c91a8ac4719/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '51a7f196d7b169451dfea927f02f6c91a8ac4719'] Unmounting chroot for build 51a7f196d7b169451dfea927f02f6c91a8ac4719... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '51a7f196d7b169451dfea927f02f6c91a8ac4719'] Removing build 51a7f196d7b169451dfea927f02f6c91a8ac4719