https://launchpad.net/ubuntu/+source/seqan-raptor/2.0.0.0.git.fecfbca+ds-3/+build/24625478 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-048 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 6 Nov 11:10:36 ntpdate[1863]: adjust time server 10.131.248.1 offset 0.003984 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24625478 --image-type chroot /home/buildd/filecache-default/93056656ffca866e6c2a454f453b424a388b800f Creating target for build PACKAGEBUILD-24625478 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24625478 Starting target for build PACKAGEBUILD-24625478 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24625478 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24625478 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24625478 Updating target for build PACKAGEBUILD-24625478 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main amd64 Packages [1390 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe amd64 Packages [14.5 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5791 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 Packages [374 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [142 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 Packages [2611 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [1193 kB] Fetched 26.9 MB in 2s (11.8 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu cpp-12 debianutils fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan8 libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libfakeroot libffi8 libgcc-12-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgprofng0 libidn2-0 libitm1 libjson-c5 liblsan0 liblz4-1 liblzma5 libp11-kit0 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtsan2 libubsan1 libudev1 libunistring2 linux-libc-dev lto-disabled-list perl perl-base readline-common sgml-base systemd systemd-sysv tzdata usrmerge xz-utils zlib1g 84 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 92.2 MB of archives. After this operation, 47.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcrypt-dev amd64 1:4.4.30-1 [112 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main amd64 libc6-dev amd64 2.36-0ubuntu4 [2088 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main amd64 libc-dev-bin amd64 2.36-0ubuntu4 [20.0 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcrypt1 amd64 1:4.4.30-1 [80.7 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 linux-libc-dev amd64 5.19.0-23.24 [1345 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main amd64 libcc1-0 amd64 12.2.0-9ubuntu1 [46.4 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main amd64 gcc-12-base amd64 12.2.0-9ubuntu1 [19.5 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main amd64 libgcc-s1 amd64 12.2.0-9ubuntu1 [54.2 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main amd64 libgomp1 amd64 12.2.0-9ubuntu1 [125 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main amd64 libitm1 amd64 12.2.0-9ubuntu1 [29.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main amd64 libatomic1 amd64 12.2.0-9ubuntu1 [10.4 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main amd64 libasan8 amd64 12.2.0-9ubuntu1 [2433 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main amd64 liblsan0 amd64 12.2.0-9ubuntu1 [1060 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main amd64 libtsan2 amd64 12.2.0-9ubuntu1 [2456 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main amd64 libubsan1 amd64 12.2.0-9ubuntu1 [969 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main amd64 libquadmath0 amd64 12.2.0-9ubuntu1 [152 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main amd64 g++-12 amd64 12.2.0-9ubuntu1 [12.0 MB] Get:18 http://ftpmaster.internal/ubuntu lunar/main amd64 libstdc++-12-dev amd64 12.2.0-9ubuntu1 [2158 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main amd64 libgcc-12-dev amd64 12.2.0-9ubuntu1 [2577 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main amd64 gcc-12 amd64 12.2.0-9ubuntu1 [21.4 MB] Get:21 http://ftpmaster.internal/ubuntu lunar/main amd64 cpp-12 amd64 12.2.0-9ubuntu1 [10.6 MB] Get:22 http://ftpmaster.internal/ubuntu lunar/main amd64 libstdc++6 amd64 12.2.0-9ubuntu1 [678 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 zlib1g amd64 1:1.2.11.dfsg-4.1ubuntu2 [58.8 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgprofng0 amd64 2.39-8ubuntu2 [897 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf0 amd64 2.39-8ubuntu2 [97.4 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf-nobfd0 amd64 2.39-8ubuntu2 [99.9 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libbinutils amd64 2.39-8ubuntu2 [610 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-common amd64 2.39-8ubuntu2 [233 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils amd64 2.39-8ubuntu2 [3240 B] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.39-8ubuntu2 [2402 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main amd64 libc6 amd64 2.36-0ubuntu4 [3163 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main amd64 base-files amd64 12.3ubuntu1 [73.4 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 debianutils amd64 5.7-0.4 [103 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main amd64 bash amd64 5.2-1ubuntu2 [788 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 grep amd64 3.8-3 [159 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libperl5.36 amd64 5.36.0-4ubuntu2 [4808 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl amd64 5.36.0-4ubuntu2 [235 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-base amd64 5.36.0-4ubuntu2 [1779 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgdbm6 amd64 1.23-3 [33.2 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgdbm-compat4 amd64 1.23-3 [6524 B] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libselinux1 amd64 3.4-1build1 [77.9 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 base-passwd amd64 3.6.1 [49.9 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main amd64 usrmerge all 29ubuntu2 [55.8 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 init-system-helpers all 1.65.2 [38.1 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main amd64 libc-bin amd64 2.36-0ubuntu4 [675 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 liblz4-1 amd64 1.9.4-1 [63.1 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 liblzma5 amd64 5.2.7-0.1 [101 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libapparmor1 amd64 3.0.7-1ubuntu3 [36.8 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcap-ng0 amd64 0.8.3-1build1 [15.2 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libaudit1 amd64 1:3.0.7-1ubuntu2 [45.4 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libseccomp2 amd64 2.5.4-1ubuntu2 [46.2 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main amd64 systemd-sysv amd64 251.4-1ubuntu7 [11.2 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main amd64 systemd amd64 251.4-1ubuntu7 [2808 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main amd64 libsystemd-shared amd64 251.4-1ubuntu7 [1703 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main amd64 libsystemd0 amd64 251.4-1ubuntu7 [323 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main amd64 libudev1 amd64 251.4-1ubuntu7 [79.8 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libapt-pkg6.0 amd64 2.5.4 [902 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgpg-error0 amd64 1.46-1 [68.9 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgv amd64 2.2.40-1ubuntu1 [137 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libunistring2 amd64 1.0-2 [536 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main amd64 libidn2-0 amd64 2.3.3-1build1 [62.9 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libffi8 amd64 3.4.4-1 [23.8 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main amd64 libp11-kit0 amd64 0.24.1-1ubuntu2 [246 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libtasn1-6 amd64 4.19.0-2 [43.9 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main amd64 libgnutls30 amd64 3.7.7-2ubuntu2 [976 kB] Get:68 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 apt amd64 2.5.4 [1378 kB] Get:69 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 init amd64 1.65.2 [4808 B] Get:70 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 sgml-base all 1.31 [11.4 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main amd64 libsemanage-common all 3.4-1build1 [9544 B] Get:72 http://ftpmaster.internal/ubuntu lunar/main amd64 libsemanage2 amd64 3.4-1build1 [93.2 kB] Get:73 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libjson-c5 amd64 0.16-2 [32.8 kB] Get:74 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 readline-common all 8.2-1.1 [55.1 kB] Get:75 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libreadline8 amd64 8.2-1.1 [150 kB] Get:76 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libsqlite3-0 amd64 3.39.4-1 [656 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main amd64 tzdata all 2022f-0ubuntu1 [400 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main amd64 libpng16-16 amd64 1.6.38-2 [186 kB] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 xz-utils amd64 5.2.7-0.1 [142 kB] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libfakeroot amd64 1.30.1-1ubuntu1 [30.9 kB] Get:81 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 fakeroot amd64 1.30.1-1ubuntu1 [60.1 kB] Get:82 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libassuan0 amd64 2.5.5-5 [37.2 kB] Get:83 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg amd64 2.2.40-1ubuntu1 [523 kB] Get:84 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgconf amd64 2.2.40-1ubuntu1 [93.8 kB] Get:85 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg-agent amd64 2.2.40-1ubuntu1 [217 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main amd64 lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 92.2 MB in 1s (95.1 MB/s) (Reading database ... 13569 files and directories currently installed.) 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Setting up binutils-x86-64-linux-gnu (2.39-8ubuntu2) ... Setting up gpg-agent (2.2.40-1ubuntu1) ... Setting up libstdc++-12-dev:amd64 (12.2.0-9ubuntu1) ... Setting up binutils (2.39-8ubuntu2) ... Setting up perl (5.36.0-4ubuntu2) ... Setting up gcc-12 (12.2.0-9ubuntu1) ... Setting up g++-12 (12.2.0-9ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24625478 amd64 lunar-proposed -c chroot:build-PACKAGEBUILD-24625478 --arch=amd64 --dist=lunar-proposed --nolog -A seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc Initiating build PACKAGEBUILD-24625478 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-048.buildd +===============================================================================+ | seqan-raptor 2.0.0.0.git.fecfbca+ds-3 (amd64) Sun, 06 Nov 2022 11:10:54 +0000 | +===============================================================================+ Package: seqan-raptor Version: 2.0.0.0.git.fecfbca+ds-3 Source Version: 2.0.0.0.git.fecfbca+ds-3 Distribution: lunar-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24625478/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/seqan-raptor-rwk3s3/resolver-UpGrvC' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/seqan-raptor-rwk3s3/seqan-raptor-2.0.0.0.git.fecfbca+ds' with '<>' I: NOTICE: Log filtering will replace 'build/seqan-raptor-rwk3s3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, pkg-config, doxygen, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, pkg-config, doxygen, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [506 B] Get:5 copy:/<>/apt_archive ./ Packages [578 B] Fetched 2041 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism doxygen dwz emacsen-common file fontconfig-config fonts-dejavu-core fonts-lmodern fonts-urw-base35 gettext gettext-base ghostscript googletest groff-base intltool-debian libapache-pom-java libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcereal-dev libclang-cpp14 libclang1-14 libcommons-logging-java libcommons-parent-java libcups2 libcurl4 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgtest-dev libharfbuzz0b libice6 libicu71 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkpathsea6 libldap-2.5-0 liblerc3 libllvm14 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpsl5 libptexenc1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan3-dev libsimde-dev libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtexluajit2 libtiff5 libtool libuchardet0 libuv1 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxxhash-dev libzzip-0-13 m4 man-db media-types pkg-config po-debconf poppler-data preview-latex-style python3 python3-minimal python3.10 python3.10-minimal rapidjson-dev t1utils tex-common texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils xfonts-encodings xfonts-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cmake-format dh-make doxygen-latex doxygen-doc doxygen-gui graphviz fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev ghostscript-x groff lrzip libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common low-memory-monitor libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support rapidjson-doc perl-tk xpdf | pdf-viewer xzdec lcdf-typetools psutils texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex default-jre-headless Recommended packages: curl | wget | lynx bzip2-doc dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl lmodern dvisvgm ps2eps tex-gyre tipa default-jre libspreadsheet-parseexcel-perl ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism doxygen dwz emacsen-common file fontconfig-config fonts-dejavu-core fonts-lmodern fonts-urw-base35 gettext gettext-base ghostscript googletest groff-base intltool-debian libapache-pom-java libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcereal-dev libclang-cpp14 libclang1-14 libcommons-logging-java libcommons-parent-java libcups2 libcurl4 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgtest-dev libharfbuzz0b libice6 libicu71 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkpathsea6 libldap-2.5-0 liblerc3 libllvm14 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpsl5 libptexenc1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan3-dev libsimde-dev libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtexluajit2 libtiff5 libtool libuchardet0 libuv1 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxxhash-dev libzzip-0-13 m4 man-db media-types pkg-config po-debconf poppler-data preview-latex-style python3 python3-minimal python3.10 python3.10-minimal rapidjson-dev sbuild-build-depends-main-dummy t1utils tex-common texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils xfonts-encodings xfonts-utils zlib1g-dev 0 upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 230 MB of archives. After this operation, 842 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [794 B] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpython3.10-minimal amd64 3.10.8-3 [802 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libexpat1 amd64 2.5.0-1 [84.2 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 python3.10-minimal amd64 3.10.8-3 [2111 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 python3-minimal amd64 3.10.6-1ubuntu1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main amd64 media-types all 8.0.0 [24.9 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main amd64 libmpdec3 amd64 2.5.1-2build2 [86.8 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpython3.10-stdlib amd64 3.10.8-3 [1783 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 python3.10 amd64 3.10.8-3 [499 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpython3-stdlib amd64 3.10.6-1ubuntu1 [6878 B] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 python3 amd64 3.10.6-1ubuntu1 [22.3 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main amd64 poppler-data all 0.4.11-1 [2171 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main amd64 libmd0 amd64 1.0.4-2 [22.7 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libbsd0 amd64 0.11.7-1 [43.9 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libdbus-1-3 amd64 1.14.0-2ubuntu3 [200 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main amd64 libelf1 amd64 0.187-4 [50.9 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libglib2.0-0 amd64 2.74.1-1 [1476 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main amd64 libicu71 amd64 71.1-3ubuntu1 [10.6 MB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libxml2 amd64 2.9.14+dfsg-1.1 [762 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main amd64 ucf all 3.0043 [56.1 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main amd64 bsdextrautils amd64 2.38-4ubuntu1 [71.1 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main amd64 libmagic-mgc amd64 1:5.41-4 [257 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main amd64 libmagic1 amd64 1:5.41-4 [87.3 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main amd64 file amd64 1:5.41-4 [21.5 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main amd64 gettext-base amd64 0.21-8 [37.8 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libedit2 amd64 3.1-20221030-1 [95.2 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libnghttp2-14 amd64 1.50.0-1 [73.7 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpipeline1 amd64 1.5.6-3 [23.4 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main amd64 libpsl5 amd64 0.21.0-1.2build2 [58.4 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main amd64 libuv1 amd64 1.44.2-1 [91.0 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main amd64 libxau6 amd64 1:1.0.9-1build5 [7634 B] Get:34 http://ftpmaster.internal/ubuntu lunar/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu5 [10.9 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main amd64 libxcb1 amd64 1.15-1 [48.0 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main amd64 libx11-data all 2:1.8.1-2 [118 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main amd64 libx11-6 amd64 2:1.8.1-2 [650 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main amd64 libxext6 amd64 2:1.3.4-1build1 [31.8 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 man-db amd64 2.11.0-1 [1182 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main amd64 m4 amd64 1.4.19-1 [244 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main amd64 autoconf all 2.71-2 [338 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main amd64 autopoint all 0.21-8 [421 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main amd64 libarchive13 amd64 3.6.0-1ubuntu1 [368 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libbrotli1 amd64 1.0.9-2build7 [309 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-6ubuntu2 [20.3 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main amd64 libsasl2-2 amd64 2.1.28+dfsg-6ubuntu2 [56.6 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-1ubuntu2 [184 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build4 [58.2 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libssh-4 amd64 0.10.4-2 [185 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcurl4 amd64 7.86.0-1 [293 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main amd64 libjsoncpp25 amd64 1.9.5-4 [80.3 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main amd64 librhash0 amd64 1.4.2-1ubuntu1 [125 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main amd64 dh-elpa-helper all 2.0.9ubuntu1 [7610 B] Get:56 http://ftpmaster.internal/ubuntu lunar/main amd64 emacsen-common all 3.0.4 [14.9 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 cmake-data all 3.24.3-1ubuntu1 [2025 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 cmake amd64 3.24.3-1ubuntu1 [8979 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main amd64 libtool all 2.4.7-4 [166 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main amd64 dh-autoreconf all 20 [16.1 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libsub-override-perl all 0.09-4 [8706 B] Get:64 http://ftpmaster.internal/ubuntu lunar/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:66 http://ftpmaster.internal/ubuntu lunar/main amd64 libdw1 amd64 0.187-4 [248 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main amd64 debugedit amd64 1:5.0-5 [46.1 kB] Get:68 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 dwz amd64 0.14+20220924-2 [112 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main amd64 gettext amd64 0.21-8 [867 kB] Get:70 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:72 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 debhelper all 13.10.1ubuntu1 [924 kB] Get:73 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libllvm14 amd64 1:14.0.6-7 [24.0 MB] Get:74 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 libclang-cpp14 amd64 1:14.0.6-7 [12.2 MB] Get:75 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 libclang1-14 amd64 1:14.0.6-7 [6783 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/universe amd64 libxapian30 amd64 1.4.21-1 [694 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/universe amd64 doxygen amd64 1.9.1-2ubuntu2 [4620 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main amd64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main amd64 libfontenc1 amd64 1:1.1.4-1build3 [14.7 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [387 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main amd64 xfonts-utils amd64 1:7.7+6build2 [94.6 kB] Get:84 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 fonts-urw-base35 all 20200910-6 [6588 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main amd64 fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/main amd64 libgs9-common all 9.56.1~dfsg1-0ubuntu3 [749 kB] Get:88 http://ftpmaster.internal/ubuntu lunar/main amd64 libavahi-common-data amd64 0.8-6ubuntu1 [24.0 kB] Get:89 http://ftpmaster.internal/ubuntu lunar/main amd64 libavahi-common3 amd64 0.8-6ubuntu1 [23.4 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main amd64 libavahi-client3 amd64 0.8-6ubuntu1 [27.6 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/main amd64 libcups2 amd64 2.4.2-1ubuntu2 [259 kB] Get:92 http://ftpmaster.internal/ubuntu lunar/main amd64 libfontconfig1 amd64 2.13.1-4.4ubuntu1 [129 kB] Get:93 http://ftpmaster.internal/ubuntu lunar/main amd64 libidn12 amd64 1.41-1 [56.2 kB] Get:94 http://ftpmaster.internal/ubuntu lunar/main amd64 libijs-0.35 amd64 0.35-15build2 [16.5 kB] Get:95 http://ftpmaster.internal/ubuntu lunar/main amd64 libjbig2dec0 amd64 0.19-3build2 [64.7 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/main amd64 libjpeg-turbo8 amd64 2.1.2-0ubuntu1 [134 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/main amd64 libjpeg8 amd64 8c-2ubuntu10 [2264 B] Get:98 http://ftpmaster.internal/ubuntu lunar/main amd64 libopenjp2-7 amd64 2.5.0-1 [171 kB] Get:99 http://ftpmaster.internal/ubuntu lunar/main amd64 libpaper1 amd64 1.1.28build2 [13.8 kB] Get:100 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libdeflate0 amd64 1.14-1 [64.8 kB] Get:101 http://ftpmaster.internal/ubuntu lunar/main amd64 libjbig0 amd64 2.1-3.1build3 [28.9 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/main amd64 liblerc3 amd64 3.0+ds-1ubuntu1 [128 kB] Get:103 http://ftpmaster.internal/ubuntu lunar/main amd64 libwebp7 amd64 1.2.2-2 [206 kB] Get:104 http://ftpmaster.internal/ubuntu lunar/main amd64 libtiff5 amd64 4.4.0-4ubuntu3 [190 kB] Get:105 http://ftpmaster.internal/ubuntu lunar/main amd64 libgs9 amd64 9.56.1~dfsg1-0ubuntu3 [5065 kB] Get:106 http://ftpmaster.internal/ubuntu lunar/main amd64 ghostscript amd64 9.56.1~dfsg1-0ubuntu3 [49.2 kB] Get:107 http://ftpmaster.internal/ubuntu lunar/universe amd64 googletest all 1.12.1-0.2 [512 kB] Get:108 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 libapache-pom-java all 25-2 [5006 B] Get:109 http://ftpmaster.internal/ubuntu lunar/main amd64 libbz2-dev amd64 1.0.8-5build1 [32.5 kB] Get:110 http://ftpmaster.internal/ubuntu lunar/main amd64 libpixman-1-0 amd64 0.40.0-1build4 [264 kB] Get:111 http://ftpmaster.internal/ubuntu lunar/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] Get:112 http://ftpmaster.internal/ubuntu lunar/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] Get:113 http://ftpmaster.internal/ubuntu lunar/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] Get:114 http://ftpmaster.internal/ubuntu lunar/main amd64 libcairo2 amd64 1.16.0-5ubuntu2 [628 kB] Get:115 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 rapidjson-dev all 1.1.0+dfsg2-7.1 [96.7 kB] Get:116 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 libcereal-dev amd64 1.3.2+dfsg-4 [222 kB] Get:117 http://ftpmaster.internal/ubuntu lunar/universe amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:118 http://ftpmaster.internal/ubuntu lunar/universe amd64 libcommons-logging-java all 1.2-3 [59.9 kB] Get:119 http://ftpmaster.internal/ubuntu lunar/main amd64 libgraphite2-3 amd64 1.3.14-1build2 [71.3 kB] Get:120 http://ftpmaster.internal/ubuntu lunar/universe amd64 libgtest-dev amd64 1.12.1-0.2 [253 kB] Get:121 http://ftpmaster.internal/ubuntu lunar/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu5 [349 kB] Get:122 http://ftpmaster.internal/ubuntu lunar/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] Get:123 http://ftpmaster.internal/ubuntu lunar/main amd64 libkpathsea6 amd64 2022.20220321.62855-4 [59.4 kB] Get:124 http://ftpmaster.internal/ubuntu lunar/main amd64 libpaper-utils amd64 1.1.28build2 [8674 B] Get:125 http://ftpmaster.internal/ubuntu lunar/main amd64 libptexenc1 amd64 2022.20220321.62855-4 [38.4 kB] Get:126 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-4.1ubuntu2 [164 kB] Get:127 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 libseqan3-dev all 3.2.0+ds-5 [744 kB] Get:128 http://ftpmaster.internal/ubuntu lunar/universe amd64 libsimde-dev all 0.7.2-6 [261 kB] Get:129 http://ftpmaster.internal/ubuntu lunar/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] Get:130 http://ftpmaster.internal/ubuntu lunar/main amd64 libsynctex2 amd64 2022.20220321.62855-4 [54.8 kB] Get:131 http://ftpmaster.internal/ubuntu lunar/universe amd64 libteckit0 amd64 2.5.11+ds1-1 [421 kB] Get:132 http://ftpmaster.internal/ubuntu lunar/main amd64 libtexlua53-5 amd64 2022.20220321.62855-4 [118 kB] Get:133 http://ftpmaster.internal/ubuntu lunar/main amd64 libtexluajit2 amd64 2022.20220321.62855-4 [264 kB] Get:134 http://ftpmaster.internal/ubuntu lunar/main amd64 libxt6 amd64 1:1.2.1-1 [177 kB] Get:135 http://ftpmaster.internal/ubuntu lunar/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] Get:136 http://ftpmaster.internal/ubuntu lunar/main amd64 libxpm4 amd64 1:3.5.12-1build2 [36.2 kB] Get:137 http://ftpmaster.internal/ubuntu lunar/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] Get:138 http://ftpmaster.internal/ubuntu lunar/main amd64 libxi6 amd64 2:1.8-1build1 [32.6 kB] Get:139 http://ftpmaster.internal/ubuntu lunar/main amd64 libxxhash-dev amd64 0.8.1-1 [65.3 kB] Get:140 http://ftpmaster.internal/ubuntu lunar/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] Get:141 http://ftpmaster.internal/ubuntu lunar/main amd64 pkg-config amd64 0.29.2-1ubuntu3 [48.2 kB] Get:142 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 tex-common all 6.18 [32.8 kB] Get:143 http://ftpmaster.internal/ubuntu lunar/universe amd64 preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:144 http://ftpmaster.internal/ubuntu lunar/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] Get:145 http://ftpmaster.internal/ubuntu lunar/universe amd64 texlive-binaries amd64 2022.20220321.62855-4 [9996 kB] Get:146 http://ftpmaster.internal/ubuntu lunar/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:147 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 texlive-base all 2022.20220923-2 [21.7 MB] Get:148 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 texlive-font-utils all 2022.20220923-3 [4108 kB] Get:149 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 texlive-fonts-recommended all 2022.20220923-2 [4973 kB] Get:150 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 texlive-latex-base all 2022.20220923-2 [1155 kB] Get:151 http://ftpmaster.internal/ubuntu lunar/universe amd64 libfontbox-java all 1:1.8.16-2 [207 kB] Get:152 http://ftpmaster.internal/ubuntu lunar/universe amd64 libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:153 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 texlive-latex-recommended all 2022.20220923-2 [8803 kB] Get:154 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 texlive-pictures all 2022.20220923-2 [15.3 MB] Get:155 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 texlive-latex-extra all 2022.20220923-3 [14.4 MB] Get:156 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 texlive-plain-generic all 2022.20220923-3 [27.8 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 230 MB in 3s (92.1 MB/s) Selecting previously unselected package libpython3.10-minimal:amd64. (Reading database ... 15539 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.8-3_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.8-3_amd64.deb ... Unpacking python3.10-minimal (3.10.8-3) ... Setting up libpython3.10-minimal:amd64 (3.10.8-3) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.10-minimal (3.10.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 15842 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.6-1ubuntu1_amd64.deb ... Unpacking python3-minimal (3.10.6-1ubuntu1) ... Selecting previously unselected package media-types. 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Preparing to unpack .../000-python3_3.10.6-1ubuntu1_amd64.deb ... Unpacking python3 (3.10.6-1ubuntu1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../001-poppler-data_0.4.11-1_all.deb ... Unpacking poppler-data (0.4.11-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../002-libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../003-libbsd0_0.11.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../004-libdbus-1-3_1.14.0-2ubuntu3_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.0-2ubuntu3) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../005-libelf1_0.187-4_amd64.deb ... Unpacking libelf1:amd64 (0.187-4) ... Selecting previously unselected package libglib2.0-0:amd64. 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Setting up libxau6:amd64 (1:1.0.9-1build5) ... Setting up libpsl5:amd64 (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.74.1-1) ... No schema files found: doing nothing. Setting up libijs-0.35:amd64 (0.35-15build2) ... Setting up libtexluajit2:amd64 (2022.20220321.62855-4) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build7) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.50.0-1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-8) ... Setting up m4 (1.4.19-1) ... Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.41-4) ... 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Setting up libptexenc1:amd64 (2022.20220321.62855-4) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libllvm14:amd64 (1:14.0.6-7) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:amd64 (7.86.0-1) ... Setting up libx11-6:amd64 (2:1.8.1-2) ... Setting up libtiff5:amd64 (4.4.0-4ubuntu3) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up libavahi-client3:amd64 (0.8-6ubuntu1) ... Setting up libpython3-stdlib:amd64 (3.10.6-1ubuntu1) ... Setting up python3.10 (3.10.8-3) ... Setting up libxpm4:amd64 (1:3.5.12-1build2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (12.2-1ubuntu1) ... Setting up libseqan3-dev (3.2.0+ds-5) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up libclang1-14 (1:14.0.6-7) ... Setting up python3 (3.10.6-1ubuntu1) ... Setting up fonts-urw-base35 (20200910-6) ... Setting up man-db (2.11.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libclang-cpp14 (1:14.0.6-7) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up libcups2:amd64 (2.4.2-1ubuntu2) ... Setting up cmake (3.24.3-1ubuntu1) ... Setting up libgs9-common (9.56.1~dfsg1-0ubuntu3) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libxi6:amd64 (2:1.8-1build1) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up doxygen (1.9.1-2ubuntu2) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... Processing triggers for systemd (251.4-1ubuntu7) ... Processing triggers for sgml-base (1.31) ... Setting up libfontconfig1:amd64 (2.13.1-4.4ubuntu1) ... Setting up libgs9:amd64 (9.56.1~dfsg1-0ubuntu3) ... Setting up ghostscript (9.56.1~dfsg1-0ubuntu3) ... Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ... Setting up texlive-binaries (2022.20220321.62855-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20220923-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-plain-generic (2022.20220923-3) ... Setting up texlive-font-utils (2022.20220923-3) ... Setting up texlive-latex-base (2022.20220923-2) ... Setting up texlive-latex-recommended (2022.20220923-2) ... Setting up texlive-pictures (2022.20220923-2) ... Setting up texlive-fonts-recommended (2022.20220923-2) ... Setting up texlive-latex-extra (2022.20220923-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39-8ubuntu2 binutils-common_2.39-8ubuntu2 binutils-x86-64-linux-gnu_2.39-8ubuntu2 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 cmake_3.24.3-1ubuntu1 cmake-data_3.24.3-1ubuntu1 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-9ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-elpa-helper_2.0.9ubuntu1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 doxygen_1.9.1-2ubuntu2 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14+20220924-2 e2fsprogs_1.46.5-2ubuntu2 emacsen-common_3.0.4 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 fontconfig-config_2.13.1-4.4ubuntu1 fonts-dejavu-core_2.37-2build1 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-6 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-9ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-9ubuntu1 gcc-12-base_12.2.0-9ubuntu1 gettext_0.21-8 gettext-base_0.21-8 ghostscript_9.56.1~dfsg1-0ubuntu3 googletest_1.12.1-0.2 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-8build1 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-1 libapache-pom-java_25-2 libapparmor1_3.0.7-1ubuntu3 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1ubuntu1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-9ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-9ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libavahi-client3_0.8-6ubuntu1 libavahi-common-data_0.8-6ubuntu1 libavahi-common3_0.8-6ubuntu1 libbinutils_2.39-8ubuntu2 libblkid1_2.38-4ubuntu1 libbrotli1_1.0.9-2build7 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcairo2_1.16.0-5ubuntu2 libcap-ng0_0.8.3-1build1 libcap2_1:2.44-1build3 libcc1-0_12.2.0-9ubuntu1 libcereal-dev_1.3.2+dfsg-4 libclang-cpp14_1:14.0.6-7 libclang1-14_1:14.0.6-7 libcom-err2_1.46.5-2ubuntu2 libcommons-logging-java_1.2-3 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.30-1 libcrypt1_1:4.4.30-1 libcryptsetup12_2:2.5.0-2ubuntu1 libctf-nobfd0_2.39-8ubuntu2 libctf0_2.39-8ubuntu2 libcups2_2.4.2-1ubuntu2 libcurl4_7.86.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdbus-1-3_1.14.0-2ubuntu3 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.9ubuntu1 libdw1_0.187-4 libedit2_3.1-20221030-1 libelf1_0.187-4 libexpat1_2.5.0-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-1 libfontbox-java_1:1.8.16-2 libfontconfig1_2.13.1-4.4ubuntu1 libfontenc1_1:1.1.4-1build3 libfreetype6_2.12.1+dfsg-3 libgcc-12-dev_12.2.0-9ubuntu1 libgcc-s1_12.2.0-9ubuntu1 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patch_2.7.6-7build2 perl_5.36.0-4ubuntu2 perl-base_5.36.0-4ubuntu2 perl-modules-5.34_5.34.0-5ubuntu1 perl-modules-5.36_5.36.0-4ubuntu2 pinentry-curses_1.2.0-2ubuntu1 pkg-config_0.29.2-1ubuntu3 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 poppler-data_0.4.11-1 preview-latex-style_12.2-1ubuntu1 procps_2:3.3.17-7ubuntu1 python3_3.10.6-1ubuntu1 python3-minimal_3.10.6-1ubuntu1 python3.10_3.10.8-3 python3.10-minimal_3.10.8-3 rapidjson-dev_1.1.0+dfsg2-7.1 readline-common_8.2-1.1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.31 systemd_251.4-1ubuntu7 systemd-sysv_251.4-1ubuntu7 sysvinit-utils_3.04-1ubuntu1 t1utils_1.41-4build2 tar_1.34+dfsg-1build3 tex-common_6.18 texlive-base_2022.20220923-2 texlive-binaries_2022.20220321.62855-4 texlive-font-utils_2022.20220923-3 texlive-fonts-recommended_2022.20220923-2 texlive-latex-base_2022.20220923-2 texlive-latex-extra_2022.20220923-3 texlive-latex-recommended_2022.20220923-2 texlive-pictures_2022.20220923-2 texlive-plain-generic_2022.20220923-3 tzdata_2022f-0ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 usrmerge_29ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 x11-common_1:7.7+23ubuntu2 xdg-utils_1.1.3-4.1ubuntu3 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xz-utils_5.2.7-0.1 zlib1g_1:1.2.11.dfsg-4.1ubuntu2 zlib1g-dev_1:1.2.11.dfsg-4.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-raptor Binary: seqan-raptor, seqan-raptor-doc Architecture: any all Version: 2.0.0.0.git.fecfbca+ds-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/raptor Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/seqan-raptor Vcs-Git: https://salsa.debian.org/med-team/seqan-raptor.git Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, pkg-config, doxygen , texlive-font-utils , texlive-latex-base , texlive-latex-recommended , texlive-latex-extra , texlive-plain-generic , texlive-fonts-recommended , ghostscript Package-List: seqan-raptor deb science optional arch=any seqan-raptor-doc deb doc optional arch=all Checksums-Sha1: 1ba2579a950e2c65b9db5a51ce87d504c96d53f9 1927492 seqan-raptor_2.0.0.0.git.fecfbca+ds.orig.tar.xz 2153612c93bc0f2c034a968ed75c1978d290efd9 7072 seqan-raptor_2.0.0.0.git.fecfbca+ds-3.debian.tar.xz Checksums-Sha256: f9c3f957edf754e7b7c05c6b1a551efedf731355de1577698bb619134bffa42c 1927492 seqan-raptor_2.0.0.0.git.fecfbca+ds.orig.tar.xz 380d2e0a94f092928b3e85bf8ef128f5e21554ae4d52f0ea5063b14f7c7aec4b 7072 seqan-raptor_2.0.0.0.git.fecfbca+ds-3.debian.tar.xz Files: b80207a39412c2b58639a67b1e7a0c03 1927492 seqan-raptor_2.0.0.0.git.fecfbca+ds.orig.tar.xz 68f8a94bd7940c7db28b3761c6c1ce09 7072 seqan-raptor_2.0.0.0.git.fecfbca+ds-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmNhCoEACgkQPCZ2P2xn 5uLnmQ/9H+/8GCtfFWOOd9c8XB4tXZAgDtUKilO9vrWLW8ybZTXNexEs85GaemiA kRPc89z+namzbMTRgVn6yWWfRZ+mF4MFuroACwjzYo+ILieyppzZM0ui1AV7kxg2 O69QtTlH3oz6/B6iQONcx58/05p++KXA6SNrA4LmiojatQAU7GTmaCZiv2+/25DC N56lagSC4vgN9FBDzgqkJNcN3GFOOP03wnRcZVydYkGu70TN5tzfPnxJxFdF2d5m cjAtK4dKn5bC1x0dqFYaLMiyYwyI0YTKSd5kj9da+nrWglT1Q1iFFy5AN+7aolkT 3DB2CCdTvlKIoHOdQufbIYL8HQ5I3w8jTu/YQ3NmUqlxZhm2h0CVvkpRTOUT2GS4 625vFIN64olbFaBvS0jSlTm5vpmry5jwPngO/5Cl5AT3lA59mBdNXL8o6NbeBm8q SbPzU3VcO4VpPgRhJl1Jgdv7No++cVfNcOOx6zdbgOOM8WOV/iN70p4+Y085hGHC zFz3KIXJIHUmqQLmbr9nY1HLrf8YUhM4cT0ueP9stO+Tw7aYtoNQZKMDN27L/IHh wdMehaO0amfy/Ki7dnzkUGbETLRzdG9ZJcXrkL5/6hzkIXCHLdag+yC+a3P/QV/n 5aC6zPO2vY2L3KJ1nnIL/CQ4Pck6kbfH0vs5Fl7hC1oLmpjS2N0= =PsGs -----END PGP SIGNATURE----- gpgv: Signature made Tue Nov 1 12:01:05 2022 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc dpkg-source: info: extracting seqan-raptor in /<> dpkg-source: info: unpacking seqan-raptor_2.0.0.0.git.fecfbca+ds.orig.tar.xz dpkg-source: info: unpacking seqan-raptor_2.0.0.0.git.fecfbca+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying privacy dpkg-source: info: applying chopper_no_test dpkg-source: info: applying chopper_no_ccache dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying debian_gtest dpkg-source: info: applying debian_xxhash Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24625478 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24625478 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24625478 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package seqan-raptor dpkg-buildpackage: info: source version 2.0.0.0.git.fecfbca+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DRAPTOR_NATIVE_BUILD=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Native build disabled. Detecting popcnt support. -- Performing Test RAPTOR_HAS_POPCNT -- Performing Test RAPTOR_HAS_POPCNT - Success -- Performing Test RAPTOR_HAS_OPENMP -- Performing Test RAPTOR_HAS_OPENMP - Success -- Performing Test RAPTOR_HAS_OPENMP_SIMD -- Performing Test RAPTOR_HAS_OPENMP_SIMD - Success -- Performing Test RAPTOR_SUPPRESS_GCC4_ABI -- Performing Test RAPTOR_SUPPRESS_GCC4_ABI - Success -- Finding program ccache -- Finding program ccache - Failed -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- Use googletest as external project. -- You can run `make test` to build and run tests. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build --arch cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Creating directories for 'chopper_project' /usr/bin/cmake -Dcfgdir= -P /<>/obj-x86_64-linux-gnu/chopper_project/tmp/chopper_project-mkdirs.cmake /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-mkdir [ 4%] No download step for 'chopper_project' cd /<>/obj-x86_64-linux-gnu/chopper_project/src && /usr/bin/cmake -E echo_append cd /<>/obj-x86_64-linux-gnu/chopper_project/src && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-download [ 6%] No patch step for 'chopper_project' /usr/bin/cmake -E echo_append /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-patch [ 8%] Performing configure step for 'chopper_project' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake --no-warn-unused-cli -DCMAKE_C_COMPILER=/usr/bin/cc "-DCMAKE_C_FLAGS=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/" -DCMAKE_CXX_COMPILER=/usr/bin/c++ "-DCMAKE_CXX_FLAGS=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w" -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_PREFIX=/<>/obj-x86_64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON -DCHOPPER_SUBMODULES_DIR=/<>/lib -DCHOPPER_USE_CCACHE=OFF -DSEQAN3_SUBMODULES_DIR=/<>/lib -DCMAKE_INSTALL_LIBDIR=/<>/obj-x86_64-linux-gnu/lib -DCMAKE_INSTALL_BINDIR=/<>/obj-x86_64-linux-gnu/bin "-GUnix Makefiles" /<>/lib/chopper Not searching for unused variables given on the command line. Re-run cmake no build system arguments -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CHOPPER_HAS_OPENMP -- Performing Test CHOPPER_HAS_OPENMP - Success -- Performing Test CHOPPER_HAS_OPENMP_SIMD -- Performing Test CHOPPER_HAS_OPENMP_SIMD - Success -- Performing Test CHOPPER_SUPPRESS_GCC4_ABI -- Performing Test CHOPPER_SUPPRESS_GCC4_ABI - Success -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- Configuring done -- Generating done -- Build files have been written to: /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-configure [ 10%] Performing build step for 'chopper_project' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && make make[5]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -S/<>/lib/chopper -B/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[6]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/depend make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake --color= make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/build make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'CMakeFiles/xxhash_project.dir/build'. make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 0%] Built target xxhash_project make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/depend make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/depend make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/depend make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/DependInfo.cmake --color= make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake --color= make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/DependInfo.cmake --color= make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/build make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/build make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/build make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 25%] Building CXX object src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o [ 25%] Building CXX object src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o [ 37%] Building CXX object src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/<>/lib/chopper/src/../include -I/<>/lib/lemon/include -I/<>/lib/robin-hood-hashing/src/include -I/<>/lib/simde/simde -isystem /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o -MF CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o.d -o CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o -c /<>/lib/chopper/src/chopper_count.cpp cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/<>/lib/chopper/src/../include -I/<>/lib/lemon/include -I/<>/lib/robin-hood-hashing/src/include -I/<>/lib/simde/simde -isystem /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /<>/lib/chopper/src/chopper_layout.cpp cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/<>/lib/chopper/src/../include -I/<>/lib/lemon/include -I/<>/lib/robin-hood-hashing/src/include -I/<>/lib/simde/simde -isystem /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -MF CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o.d -o CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -c /<>/lib/chopper/src/measure_hyperloglog.cpp [ 50%] Linking CXX static library ../lib/libchopper_count_lib.a cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_count_lib.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_count_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libchopper_count_lib.a CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o /usr/bin/ranlib ../lib/libchopper_count_lib.a make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 50%] Built target chopper_count_lib [ 62%] Linking CXX static library ../lib/libchopper_layout_lib.a cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ranlib ../lib/libchopper_layout_lib.a make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 62%] Built target chopper_layout_lib make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/depend make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake --color= make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/build make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 75%] Building CXX object src/CMakeFiles/chopper.dir/chopper.cpp.o cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/<>/lib/chopper/src/../include -I/<>/lib/lemon/include -I/<>/lib/robin-hood-hashing/src/include -I/<>/lib/simde/simde -isystem /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /<>/lib/chopper/src/chopper.cpp [ 87%] Linking CXX executable ../bin/measure_hyperloglog cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/measure_hyperloglog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -o ../bin/measure_hyperloglog /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 87%] Built target measure_hyperloglog [100%] Linking CXX executable ../bin/chopper cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/chopper.dir/chopper.cpp.o -o ../bin/chopper ../lib/libchopper_count_lib.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [100%] Built target chopper make[6]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles 0 make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-build [ 12%] Performing install step for 'chopper_project' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && make install make[5]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -S/<>/lib/chopper -B/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[6]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/depend make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake --color= make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/build make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'CMakeFiles/xxhash_project.dir/build'. make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 0%] Built target xxhash_project make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/depend make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/depend make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/depend make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/DependInfo.cmake --color= make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake --color= make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/compiler_depend.internal". Dependencies file "src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/compiler_depend.internal". Dependencies file "src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target chopper_count_lib Consolidate compiler generated dependencies of target chopper_layout_lib make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/build make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/build Consolidate compiler generated dependencies of target measure_hyperloglog make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/build make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/chopper_count_lib.dir/build'. make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/chopper_layout_lib.dir/build'. make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/measure_hyperloglog.dir/build'. make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 50%] Built target chopper_count_lib [ 50%] Built target chopper_layout_lib make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/depend make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/lib/chopper /<>/lib/chopper/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake --color= [ 75%] Built target measure_hyperloglog Dependencies file "src/CMakeFiles/chopper.dir/chopper.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target chopper make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/build make[7]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/chopper.dir/build'. make[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [100%] Built target chopper make[6]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[6]: Entering directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[6]: Nothing to be done for 'preinstall'. make[6]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/obj-x86_64-linux-gnu/lib/libchopper_count_lib.a -- Installing: /<>/obj-x86_64-linux-gnu/lib/libchopper_layout_lib.a -- Installing: /<>/obj-x86_64-linux-gnu/bin/chopper make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-install [ 14%] Completed 'chopper_project' /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/CMakeFiles /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/CMakeFiles/chopper_project-complete /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-done make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target chopper_project make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/upgrade /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/upgrade /<>/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/argument_parsing /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/argument_parsing /<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/build/hibf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/build/hibf /<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/build /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/build /<>/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 16%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o cd /<>/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /<>/src/upgrade/raptor_upgrade.cpp [ 18%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o [ 20%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o [ 22%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o cd /<>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -c /<>/src/build/hibf/parse_chopper_pack_line.cpp cd /<>/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o -MF CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o.d -o CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o -c /<>/src/build/build_from_minimiser.cpp cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /<>/src/build/hibf/bin_size_in_bits.cpp [ 24%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o cd /<>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /<>/src/argument_parsing/build_parsing.cpp [ 26%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /<>/src/build/hibf/chopper_build.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/chopper_build.cpp:8: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/../include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:11, from /<>/src/build/hibf/chopper_build.cpp:11: /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Linking CXX static library ../../lib/libraptor_upgrade.a cd /<>/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o /usr/bin/ranlib ../../lib/libraptor_upgrade.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 28%] Built target raptor_upgrade [ 30%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /<>/src/build/hibf/compute_kmers.cpp [ 32%] Building CXX object src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o -c /<>/src/build/compute_minimiser.cpp [ 34%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /<>/src/build/hibf/construct_ibf.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/construct_ibf.cpp:8: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/../include/raptor/build/hibf/construct_ibf.hpp:13, from /<>/src/build/hibf/construct_ibf.cpp:11: /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /<>/src/build/hibf/create_ibfs_from_chopper_pack.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/create_ibfs_from_chopper_pack.cpp:8: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/../include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:11, from /<>/src/build/hibf/create_ibfs_from_chopper_pack.cpp:10: /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o cd /<>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /<>/src/argument_parsing/init_shared_meta.cpp [ 40%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o cd /<>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /<>/src/argument_parsing/parse_bin_path.cpp [ 42%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /<>/src/build/hibf/hierarchical_build.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/hierarchical_build.cpp:8: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 44%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /<>/src/build/raptor_build.cpp [ 46%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o cd /<>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /<>/src/argument_parsing/search_parsing.cpp In file included from /<>/src/../include/raptor/build/hibf/construct_ibf.hpp:13, from /<>/src/build/hibf/hierarchical_build.cpp:11: /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o cd /<>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /<>/src/argument_parsing/upgrade_parsing.cpp [ 51%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o -c /<>/src/build/hibf/initialise_max_bin_kmers.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/initialise_max_bin_kmers.cpp:8: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/../include/raptor/build/hibf/hierarchical_build.hpp:13, from /<>/src/build/hibf/initialise_max_bin_kmers.cpp:11: /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /<>/src/build/hibf/insert_into_ibf.cpp [ 55%] Linking CXX static library ../../lib/libraptor_build.a cd /<>/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o /usr/bin/ranlib ../../lib/libraptor_build.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target raptor_build make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/search /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/search /<>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 57%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o cd /<>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -MF CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d -o CMakeFiles/raptor_search.dir/raptor_search.cpp.o -c /<>/src/search/raptor_search.cpp [ 59%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o cd /<>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /<>/src/search/search_hibf.cpp [ 61%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o cd /<>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /<>/src/search/search_ibf.cpp [ 63%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /<>/src/build/hibf/loop_over_children.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/loop_over_children.cpp:8: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/../include/raptor/build/hibf/hierarchical_build.hpp:13, from /<>/src/build/hibf/loop_over_children.cpp:12: /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /<>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_argument_parsing.a CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o /usr/bin/ranlib ../../lib/libraptor_argument_parsing.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target raptor_argument_parsing make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/threshold /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/threshold /<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o cd /<>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /<>/src/threshold/one_indirect_error_model.cpp [ 69%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /<>/src/build/hibf/parse_chopper_pack_header.cpp [ 71%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o cd /<>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /<>/src/threshold/multiple_error_model.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/parse_chopper_pack_header.cpp:12: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /<>/src/build/hibf/parse_chopper_pack_header.cpp:8: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 73%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o cd /<>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /<>/src/threshold/pascal_row.cpp [ 75%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o cd /<>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /<>/src/threshold/one_error_model.cpp [ 77%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o cd /<>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /<>/src/threshold/precompute_correction.cpp [ 79%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /<>/src/build/hibf/parse_chopper_pack_line.cpp [ 81%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /<>/src/build/hibf/read_chopper_pack_file.cpp [ 83%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o cd /<>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /<>/src/threshold/precompute_threshold.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/read_chopper_pack_file.cpp:8: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/../include/raptor/build/hibf/read_chopper_pack_file.hpp:12, from /<>/src/build/hibf/read_chopper_pack_file.cpp:12: /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Linking CXX static library ../../lib/libraptor_threshold.a cd /<>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o /usr/bin/ranlib ../../lib/libraptor_threshold.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target raptor_threshold [ 87%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /<>/src/build/hibf/update_user_bins.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/update_user_bins.cpp:8: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/../include/raptor/build/hibf/update_user_bins.hpp:10, from /<>/src/build/hibf/update_user_bins.cpp:10: /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /<>/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o cd /<>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o -MF CMakeFiles/raptor_search.dir/search_multiple.cpp.o.d -o CMakeFiles/raptor_search.dir/search_multiple.cpp.o -c /<>/src/search/search_multiple.cpp [ 91%] Linking CXX static library ../../../lib/libraptor_build_hibf.a cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o /usr/bin/ranlib ../../../lib/libraptor_build_hibf.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target raptor_build_hibf [ 93%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o cd /<>/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o -MF CMakeFiles/raptor_search.dir/search_socks.cpp.o.d -o CMakeFiles/raptor_search.dir/search_socks.cpp.o -c /<>/src/search/search_socks.cpp [ 95%] Linking CXX static library ../../lib/libraptor_search.a cd /<>/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_multiple.cpp.o CMakeFiles/raptor_search.dir/search_socks.cpp.o /usr/bin/ranlib ../../lib/libraptor_search.a make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target raptor_search make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/raptor.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /<>/src/raptor.cpp [100%] Linking CXX executable ../bin/raptor cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/raptor.dir/raptor.cpp.o -o ../bin/raptor ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../lib/libchopper_count_lib.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target raptor make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' obj-*/bin/raptor --export-help man > debian/raptor.1 obj-*/bin/raptor build --export-help man > debian/raptor-build.1 obj-*/bin/raptor search --export-help man > debian/raptor-search.1 obj-*/bin/raptor socks --export-help man > debian/raptor-socks.1 obj-*/bin/raptor socks build --export-help man > debian/raptor-socks-build.1 obj-*/bin/raptor socks lookup-kmer --export-help man > debian/raptor-socks-lookup-kmer.1 obj-*/bin/raptor upgrade --export-help man > debian/raptor-upgrade.1 make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/<>' cd obj-* && /usr/bin/make doc && cd doc/latex && /usr/bin/make make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 doc make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 1 /usr/bin/make -f CMakeFiles/Makefile2 doc/CMakeFiles/doc.dir/all make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/depend make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/doc /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/doc /<>/obj-x86_64-linux-gnu/doc/CMakeFiles/doc.dir/DependInfo.cmake --color= make[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/build make[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Generating (developer) API documentation with Doxygen. cd /<>/obj-x86_64-linux-gnu/doc && /usr/bin/doxygen warning: ignoring unsupported tag 'CREATE_SUBDIRS_LEVEL' at line 13, file Doxyfile warning: ignoring unsupported tag 'SHOW_HEADERFILE' at line 85, file Doxyfile warning: ignoring unsupported tag 'WARN_IF_INCOMPLETE_DOC' at line 115, file Doxyfile warning: ignoring unsupported tag 'WARN_LINE_FORMAT' at line 119, file Doxyfile warning: ignoring unsupported tag 'DOCSET_FEEDURL' at line 226, file Doxyfile warning: ignoring unsupported tag 'FULL_SIDEBAR' at line 249, file Doxyfile warning: ignoring unsupported tag 'OBFUSCATE_EMAILS' at line 253, file Doxyfile warning: ignoring unsupported tag 'MATHJAX_VERSION' at line 259, file Doxyfile warning: ignoring unsupported tag 'DIR_GRAPH_MAX_DEPTH' at line 377, file Doxyfile Doxygen version used: 1.9.1 Searching for include files... Searching for files in directory /<>/include Searching for files in directory /<>/include/raptor Searching for files in directory /<>/include/raptor/argument_parsing Searching for files in directory /<>/include/raptor/build Searching for files in directory /<>/include/raptor/build/hibf Searching for files in directory /<>/include/raptor/search Searching for files in directory /<>/include/raptor/threshold Searching for files in directory /<>/include/raptor/upgrade Searching for example files... Searching for images... Searching for files in directory /<>/doc Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/include Searching for files in directory /<>/include/raptor Searching for files in directory /<>/include/raptor/argument_parsing Searching for files in directory /<>/include/raptor/build Searching for files in directory /<>/include/raptor/build/hibf Searching for files in directory /<>/include/raptor/search Searching for files in directory /<>/include/raptor/threshold Searching for files in directory /<>/include/raptor/upgrade Searching for files in directory /<>/src Searching for files in directory /<>/src/argument_parsing Searching for files in directory /<>/src/build Searching for files in directory /<>/src/build/hibf Searching for files in directory /<>/src/search Searching for files in directory /<>/src/threshold Searching for files in directory /<>/src/upgrade Reading and parsing tag files Parsing files Preprocessing /<>/include/raptor/adjust_seed.hpp... Parsing file /<>/include/raptor/adjust_seed.hpp... Preprocessing /<>/include/raptor/argument_parsing/build_arguments.hpp... Parsing file /<>/include/raptor/argument_parsing/build_arguments.hpp... Preprocessing /<>/include/raptor/argument_parsing/build_parsing.hpp... Parsing file /<>/include/raptor/argument_parsing/build_parsing.hpp... Preprocessing /<>/include/raptor/argument_parsing/init_shared_meta.hpp... Parsing file /<>/include/raptor/argument_parsing/init_shared_meta.hpp... Preprocessing /<>/include/raptor/argument_parsing/parse_bin_path.hpp... Parsing file /<>/include/raptor/argument_parsing/parse_bin_path.hpp... Preprocessing /<>/include/raptor/argument_parsing/search_arguments.hpp... Parsing file /<>/include/raptor/argument_parsing/search_arguments.hpp... Preprocessing /<>/include/raptor/argument_parsing/search_parsing.hpp... Parsing file /<>/include/raptor/argument_parsing/search_parsing.hpp... Preprocessing /<>/include/raptor/argument_parsing/upgrade_arguments.hpp... Parsing file /<>/include/raptor/argument_parsing/upgrade_arguments.hpp... Preprocessing /<>/include/raptor/argument_parsing/upgrade_parsing.hpp... Parsing file /<>/include/raptor/argument_parsing/upgrade_parsing.hpp... Preprocessing /<>/include/raptor/argument_parsing/validators.hpp... Parsing file /<>/include/raptor/argument_parsing/validators.hpp... Preprocessing /<>/include/raptor/build/build_from_files.hpp... Parsing file /<>/include/raptor/build/build_from_files.hpp... Preprocessing /<>/include/raptor/build/build_from_minimiser.hpp... Parsing file /<>/include/raptor/build/build_from_minimiser.hpp... Preprocessing /<>/include/raptor/build/call_parallel_on_bins.hpp... Parsing file /<>/include/raptor/build/call_parallel_on_bins.hpp... Preprocessing /<>/include/raptor/build/compute_minimiser.hpp... Parsing file /<>/include/raptor/build/compute_minimiser.hpp... Preprocessing /<>/include/raptor/build/hibf/bin_prefixes.hpp... Parsing file /<>/include/raptor/build/hibf/bin_prefixes.hpp... Preprocessing /<>/include/raptor/build/hibf/bin_size_in_bits.hpp... Parsing file /<>/include/raptor/build/hibf/bin_size_in_bits.hpp... Preprocessing /<>/include/raptor/build/hibf/build_data.hpp... Parsing file /<>/include/raptor/build/hibf/build_data.hpp... Preprocessing /<>/include/raptor/build/hibf/chopper_build.hpp... Parsing file /<>/include/raptor/build/hibf/chopper_build.hpp... Preprocessing /<>/include/raptor/build/hibf/chopper_pack_record.hpp... Parsing file /<>/include/raptor/build/hibf/chopper_pack_record.hpp... Preprocessing /<>/include/raptor/build/hibf/compute_kmers.hpp... Parsing file /<>/include/raptor/build/hibf/compute_kmers.hpp... Preprocessing /<>/include/raptor/build/hibf/construct_ibf.hpp... Parsing file /<>/include/raptor/build/hibf/construct_ibf.hpp... Preprocessing /<>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Parsing file /<>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Preprocessing /<>/include/raptor/build/hibf/hierarchical_build.hpp... Parsing file /<>/include/raptor/build/hibf/hierarchical_build.hpp... Preprocessing /<>/include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Parsing file /<>/include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Preprocessing /<>/include/raptor/build/hibf/insert_into_ibf.hpp... Parsing file /<>/include/raptor/build/hibf/insert_into_ibf.hpp... Preprocessing /<>/include/raptor/build/hibf/loop_over_children.hpp... Parsing file /<>/include/raptor/build/hibf/loop_over_children.hpp... Preprocessing /<>/include/raptor/build/hibf/node_data.hpp... Parsing file /<>/include/raptor/build/hibf/node_data.hpp... Preprocessing /<>/include/raptor/build/hibf/parse_chopper_pack_header.hpp... Parsing file /<>/include/raptor/build/hibf/parse_chopper_pack_header.hpp... Preprocessing /<>/include/raptor/build/hibf/parse_chopper_pack_line.hpp... Parsing file /<>/include/raptor/build/hibf/parse_chopper_pack_line.hpp... Preprocessing /<>/include/raptor/build/hibf/read_chopper_pack_file.hpp... Parsing file /<>/include/raptor/build/hibf/read_chopper_pack_file.hpp... Preprocessing /<>/include/raptor/build/hibf/update_user_bins.hpp... Parsing file /<>/include/raptor/build/hibf/update_user_bins.hpp... Preprocessing /<>/include/raptor/build/index_factory.hpp... Parsing file /<>/include/raptor/build/index_factory.hpp... Preprocessing /<>/include/raptor/build/raptor_build.hpp... Parsing file /<>/include/raptor/build/raptor_build.hpp... Preprocessing /<>/include/raptor/build/store_index.hpp... Parsing file /<>/include/raptor/build/store_index.hpp... Preprocessing /<>/include/raptor/dna4_traits.hpp... Parsing file /<>/include/raptor/dna4_traits.hpp... Preprocessing /<>/include/raptor/hierarchical_interleaved_bloom_filter.hpp... Parsing file /<>/include/raptor/hierarchical_interleaved_bloom_filter.hpp... Preprocessing /<>/include/raptor/index.hpp... Parsing file /<>/include/raptor/index.hpp... Preprocessing /<>/include/raptor/raptor.hpp... Parsing file /<>/include/raptor/raptor.hpp... Preprocessing /<>/include/raptor/search/do_parallel.hpp... Parsing file /<>/include/raptor/search/do_parallel.hpp... Preprocessing /<>/include/raptor/search/load_index.hpp... Parsing file /<>/include/raptor/search/load_index.hpp... Preprocessing /<>/include/raptor/search/search.hpp... Parsing file /<>/include/raptor/search/search.hpp... Preprocessing /<>/include/raptor/search/search_hibf.hpp... Parsing file /<>/include/raptor/search/search_hibf.hpp... Preprocessing /<>/include/raptor/search/search_ibf.hpp... Parsing file /<>/include/raptor/search/search_ibf.hpp... Preprocessing /<>/include/raptor/search/search_multiple.hpp... Parsing file /<>/include/raptor/search/search_multiple.hpp... Preprocessing /<>/include/raptor/search/search_single.hpp... Parsing file /<>/include/raptor/search/search_single.hpp... Preprocessing /<>/include/raptor/search/search_socks.hpp... Parsing file /<>/include/raptor/search/search_socks.hpp... Preprocessing /<>/include/raptor/search/sync_out.hpp... Parsing file /<>/include/raptor/search/sync_out.hpp... Preprocessing /<>/include/raptor/strong_types.hpp... Parsing file /<>/include/raptor/strong_types.hpp... Preprocessing /<>/include/raptor/threshold/forward_strand_minimiser.hpp... Parsing file /<>/include/raptor/threshold/forward_strand_minimiser.hpp... Preprocessing /<>/include/raptor/threshold/logspace.hpp... Parsing file /<>/include/raptor/threshold/logspace.hpp... Preprocessing /<>/include/raptor/threshold/multiple_error_model.hpp... Parsing file /<>/include/raptor/threshold/multiple_error_model.hpp... Preprocessing /<>/include/raptor/threshold/one_error_model.hpp... Parsing file /<>/include/raptor/threshold/one_error_model.hpp... Preprocessing /<>/include/raptor/threshold/one_indirect_error_model.hpp... Parsing file /<>/include/raptor/threshold/one_indirect_error_model.hpp... Preprocessing /<>/include/raptor/threshold/pascal_row.hpp... Parsing file /<>/include/raptor/threshold/pascal_row.hpp... Preprocessing /<>/include/raptor/threshold/precompute_correction.hpp... Parsing file /<>/include/raptor/threshold/precompute_correction.hpp... Preprocessing /<>/include/raptor/threshold/precompute_threshold.hpp... Parsing file /<>/include/raptor/threshold/precompute_threshold.hpp... Preprocessing /<>/include/raptor/threshold/threshold.hpp... Parsing file /<>/include/raptor/threshold/threshold.hpp... Preprocessing /<>/include/raptor/threshold/threshold_parameters.hpp... Parsing file /<>/include/raptor/threshold/threshold_parameters.hpp... Preprocessing /<>/include/raptor/upgrade/upgrade.hpp... Parsing file /<>/include/raptor/upgrade/upgrade.hpp... Preprocessing /<>/include/raptor/upgrade/upgrade_index.hpp... Parsing file /<>/include/raptor/upgrade/upgrade_index.hpp... Preprocessing /<>/src/argument_parsing/build_parsing.cpp... Parsing file /<>/src/argument_parsing/build_parsing.cpp... Preprocessing /<>/src/argument_parsing/CMakeLists.txt... Parsing file /<>/src/argument_parsing/CMakeLists.txt... Preprocessing /<>/src/argument_parsing/init_shared_meta.cpp... Parsing file /<>/src/argument_parsing/init_shared_meta.cpp... Preprocessing /<>/src/argument_parsing/parse_bin_path.cpp... Parsing file /<>/src/argument_parsing/parse_bin_path.cpp... Preprocessing /<>/src/argument_parsing/search_parsing.cpp... Parsing file /<>/src/argument_parsing/search_parsing.cpp... Preprocessing /<>/src/argument_parsing/upgrade_parsing.cpp... Parsing file /<>/src/argument_parsing/upgrade_parsing.cpp... Preprocessing /<>/src/build/build_from_minimiser.cpp... Parsing file /<>/src/build/build_from_minimiser.cpp... Preprocessing /<>/src/build/CMakeLists.txt... Parsing file /<>/src/build/CMakeLists.txt... Preprocessing /<>/src/build/compute_minimiser.cpp... Parsing file /<>/src/build/compute_minimiser.cpp... Preprocessing /<>/src/build/hibf/bin_size_in_bits.cpp... Parsing file /<>/src/build/hibf/bin_size_in_bits.cpp... Preprocessing /<>/src/build/hibf/chopper_build.cpp... Parsing file /<>/src/build/hibf/chopper_build.cpp... Preprocessing /<>/src/build/hibf/CMakeLists.txt... Parsing file /<>/src/build/hibf/CMakeLists.txt... Preprocessing /<>/src/build/hibf/compute_kmers.cpp... Parsing file /<>/src/build/hibf/compute_kmers.cpp... Preprocessing /<>/src/build/hibf/construct_ibf.cpp... Parsing file /<>/src/build/hibf/construct_ibf.cpp... Preprocessing /<>/src/build/hibf/create_ibfs_from_chopper_pack.cpp... Parsing file /<>/src/build/hibf/create_ibfs_from_chopper_pack.cpp... Preprocessing /<>/src/build/hibf/hierarchical_build.cpp... Parsing file /<>/src/build/hibf/hierarchical_build.cpp... Preprocessing /<>/src/build/hibf/initialise_max_bin_kmers.cpp... Parsing file /<>/src/build/hibf/initialise_max_bin_kmers.cpp... Preprocessing /<>/src/build/hibf/insert_into_ibf.cpp... Parsing file /<>/src/build/hibf/insert_into_ibf.cpp... Preprocessing /<>/src/build/hibf/loop_over_children.cpp... Parsing file /<>/src/build/hibf/loop_over_children.cpp... Preprocessing /<>/src/build/hibf/parse_chopper_pack_header.cpp... Parsing file /<>/src/build/hibf/parse_chopper_pack_header.cpp... Preprocessing /<>/src/build/hibf/parse_chopper_pack_line.cpp... Parsing file /<>/src/build/hibf/parse_chopper_pack_line.cpp... Preprocessing /<>/src/build/hibf/read_chopper_pack_file.cpp... Parsing file /<>/src/build/hibf/read_chopper_pack_file.cpp... Preprocessing /<>/src/build/hibf/update_user_bins.cpp... Parsing file /<>/src/build/hibf/update_user_bins.cpp... Preprocessing /<>/src/build/raptor_build.cpp... Parsing file /<>/src/build/raptor_build.cpp... Preprocessing /<>/src/CMakeLists.txt... Parsing file /<>/src/CMakeLists.txt... Preprocessing /<>/src/raptor.cpp... Parsing file /<>/src/raptor.cpp... Preprocessing /<>/src/search/CMakeLists.txt... Parsing file /<>/src/search/CMakeLists.txt... Preprocessing /<>/src/search/raptor_search.cpp... Parsing file /<>/src/search/raptor_search.cpp... Preprocessing /<>/src/search/search_hibf.cpp... Parsing file /<>/src/search/search_hibf.cpp... Preprocessing /<>/src/search/search_ibf.cpp... Parsing file /<>/src/search/search_ibf.cpp... Preprocessing /<>/src/search/search_multiple.cpp... Parsing file /<>/src/search/search_multiple.cpp... Preprocessing /<>/src/search/search_socks.cpp... Parsing file /<>/src/search/search_socks.cpp... Preprocessing /<>/src/threshold/CMakeLists.txt... Parsing file /<>/src/threshold/CMakeLists.txt... Preprocessing /<>/src/threshold/multiple_error_model.cpp... Parsing file /<>/src/threshold/multiple_error_model.cpp... Preprocessing /<>/src/threshold/one_error_model.cpp... Parsing file /<>/src/threshold/one_error_model.cpp... Preprocessing /<>/src/threshold/one_indirect_error_model.cpp... Parsing file /<>/src/threshold/one_indirect_error_model.cpp... Preprocessing /<>/src/threshold/pascal_row.cpp... Parsing file /<>/src/threshold/pascal_row.cpp... Preprocessing /<>/src/threshold/precompute_correction.cpp... Parsing file /<>/src/threshold/precompute_correction.cpp... Preprocessing /<>/src/threshold/precompute_threshold.cpp... Parsing file /<>/src/threshold/precompute_threshold.cpp... Preprocessing /<>/src/upgrade/CMakeLists.txt... Parsing file /<>/src/upgrade/CMakeLists.txt... Preprocessing /<>/src/upgrade/raptor_upgrade.cpp... Parsing file /<>/src/upgrade/raptor_upgrade.cpp... Reading /<>/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file include/raptor/adjust_seed.hpp... Generating code for file include/raptor/argument_parsing/build_arguments.hpp... Generating code for file include/raptor/argument_parsing/build_parsing.hpp... Generating code for file include/raptor/argument_parsing/init_shared_meta.hpp... Generating code for file include/raptor/argument_parsing/parse_bin_path.hpp... Generating code for file include/raptor/argument_parsing/search_arguments.hpp... Generating code for file include/raptor/argument_parsing/search_parsing.hpp... Generating code for file include/raptor/argument_parsing/upgrade_arguments.hpp... Generating code for file include/raptor/argument_parsing/upgrade_parsing.hpp... Generating code for file include/raptor/argument_parsing/validators.hpp... Generating code for file include/raptor/build/build_from_files.hpp... Generating code for file include/raptor/build/build_from_minimiser.hpp... Generating code for file include/raptor/build/call_parallel_on_bins.hpp... Generating code for file include/raptor/build/compute_minimiser.hpp... Generating code for file include/raptor/build/hibf/bin_prefixes.hpp... Generating code for file include/raptor/build/hibf/bin_size_in_bits.hpp... Generating code for file include/raptor/build/hibf/build_data.hpp... Generating code for file include/raptor/build/hibf/chopper_build.hpp... Generating code for file include/raptor/build/hibf/chopper_pack_record.hpp... Generating code for file include/raptor/build/hibf/compute_kmers.hpp... Generating code for file include/raptor/build/hibf/construct_ibf.hpp... Generating code for file include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Generating code for file include/raptor/build/hibf/hierarchical_build.hpp... Generating code for file include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Generating code for file include/raptor/build/hibf/insert_into_ibf.hpp... Generating code for file include/raptor/build/hibf/loop_over_children.hpp... Generating code for file include/raptor/build/hibf/node_data.hpp... Generating code for file include/raptor/build/hibf/parse_chopper_pack_header.hpp... Generating code for file include/raptor/build/hibf/parse_chopper_pack_line.hpp... Generating code for file include/raptor/build/hibf/read_chopper_pack_file.hpp... Generating code for file include/raptor/build/hibf/update_user_bins.hpp... Generating code for file include/raptor/build/index_factory.hpp... Generating code for file include/raptor/build/raptor_build.hpp... Generating code for file include/raptor/build/store_index.hpp... Generating code for file include/raptor/dna4_traits.hpp... Generating code for file include/raptor/hierarchical_interleaved_bloom_filter.hpp... Generating code for file include/raptor/index.hpp... Generating code for file include/raptor/raptor.hpp... Generating code for file include/raptor/search/do_parallel.hpp... Generating code for file include/raptor/search/load_index.hpp... Generating code for file include/raptor/search/search.hpp... Generating code for file include/raptor/search/search_hibf.hpp... Generating code for file include/raptor/search/search_ibf.hpp... Generating code for file include/raptor/search/search_multiple.hpp... Generating code for file include/raptor/search/search_single.hpp... Generating code for file include/raptor/search/search_socks.hpp... Generating code for file include/raptor/search/sync_out.hpp... Generating code for file include/raptor/strong_types.hpp... Generating code for file include/raptor/threshold/forward_strand_minimiser.hpp... Generating code for file include/raptor/threshold/logspace.hpp... Generating code for file include/raptor/threshold/multiple_error_model.hpp... Generating code for file include/raptor/threshold/one_error_model.hpp... Generating code for file include/raptor/threshold/one_indirect_error_model.hpp... Generating code for file include/raptor/threshold/pascal_row.hpp... Generating code for file include/raptor/threshold/precompute_correction.hpp... Generating code for file include/raptor/threshold/precompute_threshold.hpp... Generating code for file include/raptor/threshold/threshold.hpp... Generating code for file include/raptor/threshold/threshold_parameters.hpp... Generating code for file include/raptor/upgrade/upgrade.hpp... Generating code for file include/raptor/upgrade/upgrade_index.hpp... Generating file documentation... Generating docs for file include/raptor/adjust_seed.hpp... Generating docs for file include/raptor/argument_parsing/build_arguments.hpp... Generating docs for file include/raptor/argument_parsing/build_parsing.hpp... Generating docs for file include/raptor/argument_parsing/init_shared_meta.hpp... Generating docs for file include/raptor/argument_parsing/parse_bin_path.hpp... Generating docs for file include/raptor/argument_parsing/search_arguments.hpp... Generating docs for file include/raptor/argument_parsing/search_parsing.hpp... Generating docs for file include/raptor/argument_parsing/upgrade_arguments.hpp... Generating docs for file include/raptor/argument_parsing/upgrade_parsing.hpp... Generating docs for file include/raptor/argument_parsing/validators.hpp... Generating docs for file include/raptor/build/build_from_files.hpp... Generating docs for file include/raptor/build/build_from_minimiser.hpp... Generating docs for file include/raptor/build/call_parallel_on_bins.hpp... Generating docs for file include/raptor/build/compute_minimiser.hpp... Generating docs for file include/raptor/build/hibf/bin_prefixes.hpp... Generating docs for file include/raptor/build/hibf/bin_size_in_bits.hpp... Generating docs for file include/raptor/build/hibf/build_data.hpp... Generating docs for file include/raptor/build/hibf/chopper_build.hpp... Generating docs for file include/raptor/build/hibf/chopper_pack_record.hpp... Generating docs for file include/raptor/build/hibf/compute_kmers.hpp... Generating docs for file include/raptor/build/hibf/construct_ibf.hpp... Generating docs for file include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Generating docs for file include/raptor/build/hibf/hierarchical_build.hpp... Generating docs for file include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Generating docs for file include/raptor/build/hibf/insert_into_ibf.hpp... Generating docs for file include/raptor/build/hibf/loop_over_children.hpp... Generating docs for file include/raptor/build/hibf/node_data.hpp... Generating docs for file include/raptor/build/hibf/parse_chopper_pack_header.hpp... Generating docs for file include/raptor/build/hibf/parse_chopper_pack_line.hpp... Generating docs for file include/raptor/build/hibf/read_chopper_pack_file.hpp... Generating docs for file include/raptor/build/hibf/update_user_bins.hpp... Generating docs for file include/raptor/build/index_factory.hpp... Generating docs for file include/raptor/build/raptor_build.hpp... Generating docs for file include/raptor/build/store_index.hpp... Generating docs for file include/raptor/dna4_traits.hpp... Generating docs for file include/raptor/hierarchical_interleaved_bloom_filter.hpp... Generating docs for file include/raptor/index.hpp... Generating docs for file include/raptor/raptor.hpp... Generating docs for file include/raptor/search/do_parallel.hpp... Generating docs for file include/raptor/search/load_index.hpp... Generating docs for file include/raptor/search/search.hpp... Generating docs for file include/raptor/search/search_hibf.hpp... Generating docs for file include/raptor/search/search_ibf.hpp... Generating docs for file include/raptor/search/search_multiple.hpp... Generating docs for file include/raptor/search/search_single.hpp... Generating docs for file include/raptor/search/search_socks.hpp... Generating docs for file include/raptor/search/sync_out.hpp... Generating docs for file include/raptor/strong_types.hpp... Generating docs for file include/raptor/threshold/forward_strand_minimiser.hpp... Generating docs for file include/raptor/threshold/logspace.hpp... Generating docs for file include/raptor/threshold/multiple_error_model.hpp... Generating docs for file include/raptor/threshold/one_error_model.hpp... Generating docs for file include/raptor/threshold/one_indirect_error_model.hpp... Generating docs for file include/raptor/threshold/pascal_row.hpp... Generating docs for file include/raptor/threshold/precompute_correction.hpp... Generating docs for file include/raptor/threshold/precompute_threshold.hpp... Generating docs for file include/raptor/threshold/threshold.hpp... Generating docs for file include/raptor/threshold/threshold_parameters.hpp... Generating docs for file include/raptor/upgrade/upgrade.hpp... Generating docs for file include/raptor/upgrade/upgrade_index.hpp... Generating docs for file LICENSE.md... Generating docs for file src/argument_parsing/build_parsing.cpp... Generating docs for file src/argument_parsing/CMakeLists.txt... Generating docs for file src/build/CMakeLists.txt... Generating docs for file src/build/hibf/CMakeLists.txt... Generating docs for file src/CMakeLists.txt... Generating docs for file src/search/CMakeLists.txt... Generating docs for file src/threshold/CMakeLists.txt... Generating docs for file src/upgrade/CMakeLists.txt... Generating docs for file src/argument_parsing/init_shared_meta.cpp... 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LaTeX Warning: Reference `parse__chopper__pack__line_8cpp' on page 10 undefined on input line 82. LaTeX Warning: Reference `read__chopper__pack__file_8cpp' on page 10 undefined on input line 83. LaTeX Warning: Reference `update__user__bins_8cpp' on page 10 undefined on inpu t line 84. LaTeX Warning: Reference `raptor__search_8cpp' on page 10 undefined on input li ne 85. LaTeX Warning: Reference `search__hibf_8cpp' on page 10 undefined on input line 86. LaTeX Warning: Reference `search__ibf_8cpp' on page 10 undefined on input line 87. LaTeX Warning: Reference `search__multiple_8cpp' on page 10 undefined on input line 88. LaTeX Warning: Reference `search__socks_8cpp' on page 10 undefined on input lin e 89. LaTeX Warning: Reference `multiple__error__model_8cpp' on page 10 undefined on input line 90. LaTeX Warning: Reference `one__error__model_8cpp' on page 10 undefined on input line 91. LaTeX Warning: Reference `one__indirect__error__model_8cpp' on page 10 undefine d on input line 92. LaTeX Warning: Reference `pascal__row_8cpp' on page 10 undefined on input line 93. LaTeX Warning: Reference `precompute__correction_8cpp' on page 10 undefined on input line 94. LaTeX Warning: Reference `precompute__threshold_8cpp' on page 10 undefined on i nput line 95. [10] LaTeX Warning: Reference `raptor__upgrade_8cpp' on page 11 undefined on input l ine 96. ) [11] [12] Chapter 6. (./namespaceraptor.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [13] [14] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [15] [16] [17] [18] [19] [20]) (./namespaceraptor_1_1detail.tex) (./namespaceraptor_1_1hibf.tex [21] Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/phv/m/n/10 size[]_[]t [] (lemon[]::[]List[]Digraph &ibf[]_[]graph, lemon[ ]::[]List[]Digraph[]::[]Node[]Map$\OML/cmm/m/it/10 <$ [22] Underfull \hbox (badness 3965) in paragraph at lines 54--56 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[ ]_[] Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 3657) in paragraph at lines 62--64 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[] _[] Underfull \hbox (badness 2626) in paragraph at lines 72--74 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3 [] Underfull \hbox (badness 1448) in paragraph at lines 76--78 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3 []::data[]_[] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 139--140 \T1/pcr/m/n/8 template seqan3[]::interleaved[]_[]bloom[]_[]filter []$\OML/cmm/m /it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[]_[]layout[] Underfull \hbox (badness 10000) in paragraph at lines 145--146 \T1/pcr/m/n/8 template seqan3[]::interleaved[]_[]bloom[]_[]filter []$\OML/cmm/m /it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[]_[]layout[] Underfull \hbox (badness 10000) in paragraph at lines 164--165 \T1/pcr/m/n/8 template void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[ ]_[]layout[]::uncompressed $\OML/cmm/m/it/8 >$ [25] [26] [27] [28] [29]) (./namespaceraptor_1_1index__structure.tex Underfull \hbox (badness 10000) in paragraph at lines 26--27 \T1/pcr/m/n/8 using [] = typedef []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[] [30] Overfull \hbox (40.3489pt too wide) in paragraph at lines 32--33 \T1/pcr/m/n/8 using [] = typedef []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[] Underfull \hbox (badness 10000) in paragraph at lines 38--39 \T1/pcr/m/n/8 using [] = typedef seqan3[]::interleaved[]_[]bloom[]_[]filter$\OM L/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[]::data[]_[] ) (./namespaceraptor_1_1logspace.tex [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 71--72 \T1/pcr/m/n/8 constexpr double raptor[]::logspace[]::negative[]_[]inf {-std[]:: numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::infinity()} ) (./namespaceraptor_1_1threshold.tex [33] [34]) [35] [36] Chapter 7. (./structraptor_1_1logspace_1_1add__fn.tex) (./classraptor_1_1bin__validator.tex [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 106--107 \T1/pcr/m/n/8 sharg[]::input[]_[]file[]_[]validator raptor[]::bin[]_[]validator []::sequence[]_[]file[]_[]validator {raptor[]::detail[] ) (./structraptor_1_1build__arguments.tex [39] [40] [41] [42]) (./structraptor_1_1hibf_1_1build__data.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [43] Underfull \hbox (badness 10000) in paragraph at lines 82--84 []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 data[]_[]layout[]_[]mode$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[] [44] Underfull \hbox (badness 10000) in paragraph at lines 103--105 \T1/pcr/m/n/8 lemon[]::[]List[]Digraph[]::[]Node[]Map$\OML/cmm/m/it/8 <$[]$>$ [ ]$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::node[]_[]map ) (./structraptor_1_1hibf_1_1chopper__pack__record.tex [45] [46]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1counting__agent__ type.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [47] Underfull \hbox (badness 10000) in paragraph at lines 55--58 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[]$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 67--70 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[]$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 79--82 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[]$\OML/cmm/m/it/8 <$ [48] Underfull \hbox (badness 10000) in paragraph at lines 91--94 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[]$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 106--110 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 val ue[]_[]t$\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 const& []$\OML/cmm/m/it/8 <$ \T1/pcr/ m/n/8 data[] Underfull \hbox (badness 10000) in paragraph at lines 115--119 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 val ue[]_[]t$\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 const& []$\OML/cmm/m/it/8 <$ \T1/pcr/ m/n/8 data[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [49] Package longtable Warning: Column widths have changed (longtable) in table 7.1 on input line 128. Package longtable Warning: Column widths have changed (longtable) in table 7.2 on input line 135. Underfull \hbox (badness 10000) detected at line 136 [][][] Underfull \hbox (badness 10000) in paragraph at lines 146--149 []\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[ ]_[] $\OML/cmm/m/it/8 >$[] Underfull \hbox (badness 10000) in paragraph at lines 158--161 []\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[ ]_[] $\OML/cmm/m/it/8 >$[] Underfull \hbox (badness 10000) in paragraph at lines 173--176 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 val ue[]_[]t$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[] ) (./structraptor_1_1dna4__traits.tex [50] <./structraptor_1_1dna4__traits.pdf> ) (./structraptor_1_1threshold_1_1forward__strand__minimiser.tex [51] [52] Package longtable Warning: Column widths have changed (longtable) in table 7.3 on input line 94. [53] Package longtable Warning: Column widths have changed (longtable) in table 7.4 on input line 142. ) (./classraptor_1_1hierarchical__interleaved__bloom__filter.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [54] [55] Package longtable Warning: Column widths have changed (longtable) in table 7.5 on input line 73. Underfull \hbox (badness 10000) detected at line 74 [][][] [56] Underfull \hbox (badness 10000) in paragraph at lines 96--98 \T1/pcr/m/n/8 using []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mod e[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::[] = seqan3[] Overfull \hbox (52.37862pt too wide) in paragraph at lines 110--112 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[] Overfull \hbox (52.37862pt too wide) in paragraph at lines 121--123 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[] Overfull \hbox (52.37862pt too wide) in paragraph at lines 132--134 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[] Overfull \hbox (58.98982pt too wide) in paragraph at lines 143--145 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::$\OMS/cmsy/m/n/8 ^^X$[] [57] Overfull \hbox (33.1786pt too wide) in paragraph at lines 157--159 [] []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/ m/it/8 >$[]\T1/pcr/m/n/8 ::[] Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[] Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[] Underfull \hbox (badness 10000) in paragraph at lines 193--195 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]layout[]_[] [58] Underfull \hbox (badness 10000) in paragraph at lines 204--206 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$[]$>$ []$<$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::ibf[]_[] Underfull \hbox (badness 10000) in paragraph at lines 215--217 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::vector$\OML/ cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n /8 data[]_[] ) (./classraptor_1_1index__factory.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [59] [60]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1membership__agent .tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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[61] Underfull \hbox (badness 10000) detected at line 49 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 59--61 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 70--72 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] [62] Overfull \hbox (18.1601pt too wide) in paragraph at lines 81--83 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (24.7713pt too wide) in paragraph at lines 92--94 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::$\OMS/cmsy/m/n/8 ^^X$\T1/pcr/m/ n/8 membership[] Underfull \hbox (badness 10000) in paragraph at lines 106--109 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ \T1/pcr/m/n/8 const& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]l ayout[]_[]mode[] Underfull \hbox (badness 10000) in paragraph at lines 114--117 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ \T1/pcr/m/n/8 const& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]l ayout[]_[]mode[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. 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[70] [71] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::vector$\OML/ cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::string$\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/8 c onst& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/p cr/m/n/8 ::bin[]_[]path ( ) [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [74] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [75] [76] [77]) (./classraptor_1_1size__validator.tex [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 96--98 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [80] [81]) (./classraptor_1_1threshold_1_1threshold.tex [82] [83]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [84] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [85] [86]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [87] Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[ ]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [88] Underfull \hbox (badness 10000) in paragraph at lines 68--70 \T1/pcr/m/n/8 std[]::string& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layou t[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 79--81 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 101--103 \T1/pcr/m/n/8 std[]::string const& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[ ]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[] Underfull \hbox (badness 10000) in paragraph at lines 112--114 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [89] Underfull \hbox (badness 10000) in paragraph at lines 123--125 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 134--137 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [90]) [91] [92] Chapter 8. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [93]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [94]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [95]) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [96]) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [97]) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [98]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [99]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [100]) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [101]) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [102]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [103]) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [104]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [105]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [106]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [107]) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [108]) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [109]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [111]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [112]) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [114]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [115]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./argument__parsing_2_c_make_lists_8txt.tex) (./build_2_c_make_lists_8txt.tex) (./build_2hibf_2_c_make_lists_8txt.tex) (./_c_make_lists_8txt.tex) (./search_2_c_make_lists_8txt.tex) (./threshold_2_c_make_lists_8txt.tex) (./upgrade_2_c_make_lists_8txt.tex) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [116]) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 [117]) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [118]) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [119]) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [120] Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 [121] Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] [122]) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [123] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [124] Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./update__user__bins_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--17 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./raptor__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [125]) (./raptor_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./raptor__search_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [126]) (./search__hibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__multiple_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 [127]) (./search__socks_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./multiple__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [128]) (./one__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./one__indirect__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./pascal__row_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [129]) (./precompute__correction_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 8--13 [130] Underfull \hbox (badness 10000) detected at line 36 [][][] ) (./precompute__threshold_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 8--15 Underfull \hbox (badness 10000) detected at line 38 [][][] ) (./raptor__upgrade_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [131]) [132] No file refman.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./refman.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (134 pages, 401886 bytes). Transcript written on refman.log. makeindex refman.idx This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file refman.idx....done (778 entries accepted, 0 rejected). Sorting entries.........done (7958 comparisons). Generating output file refman.ind....done (1042 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. pdflatex refman This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2022-06-01> patch level 5 L3 programming layer <2022-08-30> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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(./md__l_i_c_e_n_s_e.tex) [1] [2] Chapter 2. (./namespaces.tex) [3] [4] Chapter 3. (./hierarchy.tex) [5] [6] Chapter 4. (./annotated.tex) [7] [8] Chapter 5. (./files.tex [9] [10]) [11] [12] Chapter 6. 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Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [59] [60]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1membership__agent .tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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[61] Underfull \hbox (badness 10000) detected at line 49 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 59--61 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 70--72 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] [62] Overfull \hbox (18.1601pt too wide) in paragraph at lines 81--83 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (24.7713pt too wide) in paragraph at lines 92--94 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::$\OMS/cmsy/m/n/8 ^^X$\T1/pcr/m/ n/8 membership[] Underfull \hbox (badness 10000) in paragraph at lines 106--109 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ \T1/pcr/m/n/8 const& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]l ayout[]_[]mode[] Underfull \hbox (badness 10000) in paragraph at lines 114--117 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ \T1/pcr/m/n/8 const& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]l ayout[]_[]mode[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [63] Underfull \hbox (badness 10000) detected at line 129 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 139--141 []\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[ ]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 150--152 []\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[ ]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] [64] Underfull \hbox (badness 10000) in paragraph at lines 164--166 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] ) (./structraptor_1_1hibf_1_1node__data.tex [65]) (./structraptor_1_1pattern__size.tex [66]) (./classraptor_1_1positive__integer__validator.tex [67] [68]) (./structraptor_1_1power__of__two__validator.tex [69]) (./classraptor_1_1raptor__index.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [70] [71] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::vector$\OML/ cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::string$\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/8 c onst& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/p cr/m/n/8 ::bin[]_[]path ( ) [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [74] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [75] [76] [77]) (./classraptor_1_1size__validator.tex [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 96--98 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [80] [81]) (./classraptor_1_1threshold_1_1threshold.tex [82] [83]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [84] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [85] [86]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [87] Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[ ]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [88] Underfull \hbox (badness 10000) in paragraph at lines 68--70 \T1/pcr/m/n/8 std[]::string& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layou t[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 79--81 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 101--103 \T1/pcr/m/n/8 std[]::string const& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[ ]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[] Underfull \hbox (badness 10000) in paragraph at lines 112--114 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [89] Underfull \hbox (badness 10000) in paragraph at lines 123--125 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 134--137 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [90]) [91] [92] Chapter 8. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [93]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [94]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [95]) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [96]) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [97]) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [98]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [99]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [100]) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [101]) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [102]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [103]) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [104]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [105]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [106]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [107]) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [108]) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [109]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [111]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [112]) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [114]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [115]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./argument__parsing_2_c_make_lists_8txt.tex) (./build_2_c_make_lists_8txt.tex) (./build_2hibf_2_c_make_lists_8txt.tex) (./_c_make_lists_8txt.tex) (./search_2_c_make_lists_8txt.tex) (./threshold_2_c_make_lists_8txt.tex) (./upgrade_2_c_make_lists_8txt.tex) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [116]) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 [117]) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [118]) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [119]) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [120] Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 [121] Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] [122]) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [123] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [124] Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 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(./md__l_i_c_e_n_s_e.tex) [1] [2] Chapter 2. (./namespaces.tex) [3] [4] Chapter 3. (./hierarchy.tex) [5] [6] Chapter 4. (./annotated.tex) [7] [8] Chapter 5. (./files.tex [9] [10]) [11] [12] Chapter 6. (./namespaceraptor.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [13] [14] [15] [16] [17] [18] [19] [20]) (./namespaceraptor_1_1detail.tex) (./namespaceraptor_1_1hibf.tex [21] Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/phv/m/n/10 size[]_[]t [] (lemon[]::[]List[]Digraph &ibf[]_[]graph, lemon[ ]::[]List[]Digraph[]::[]Node[]Map$\OML/cmm/m/it/10 <$ [22] Underfull \hbox (badness 3965) in paragraph at lines 54--56 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[ ]_[] Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 3657) in paragraph at lines 62--64 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[] _[] Underfull \hbox (badness 2626) in paragraph at lines 72--74 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3 [] Underfull \hbox (badness 1448) in paragraph at lines 76--78 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3 []::data[]_[] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 139--140 \T1/pcr/m/n/8 template seqan3[]::interleaved[]_[]bloom[]_[]filter []$\OML/cmm/m /it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[]_[]layout[] Underfull \hbox (badness 10000) in paragraph at lines 145--146 \T1/pcr/m/n/8 template seqan3[]::interleaved[]_[]bloom[]_[]filter []$\OML/cmm/m /it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[]_[]layout[] Underfull \hbox (badness 10000) in paragraph at lines 164--165 \T1/pcr/m/n/8 template void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[ ]_[]layout[]::uncompressed $\OML/cmm/m/it/8 >$ [25] [26] [27] [28] [29]) (./namespaceraptor_1_1index__structure.tex Underfull \hbox (badness 10000) in paragraph at lines 26--27 \T1/pcr/m/n/8 using [] = typedef []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[] [30] Overfull \hbox (40.3489pt too wide) in paragraph at lines 32--33 \T1/pcr/m/n/8 using [] = typedef []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[] Underfull \hbox (badness 10000) in paragraph at lines 38--39 \T1/pcr/m/n/8 using [] = typedef seqan3[]::interleaved[]_[]bloom[]_[]filter$\OM L/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[]::data[]_[] ) (./namespaceraptor_1_1logspace.tex [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 71--72 \T1/pcr/m/n/8 constexpr double raptor[]::logspace[]::negative[]_[]inf {-std[]:: numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::infinity()} ) (./namespaceraptor_1_1threshold.tex [33] [34]) [35] [36] Chapter 7. (./structraptor_1_1logspace_1_1add__fn.tex) (./classraptor_1_1bin__validator.tex [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 106--107 \T1/pcr/m/n/8 sharg[]::input[]_[]file[]_[]validator raptor[]::bin[]_[]validator []::sequence[]_[]file[]_[]validator {raptor[]::detail[] ) (./structraptor_1_1build__arguments.tex [39] [40] [41] [42]) (./structraptor_1_1hibf_1_1build__data.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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[47] Underfull \hbox (badness 10000) in paragraph at lines 55--58 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[]$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 67--70 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[]$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 79--82 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[]$\OML/cmm/m/it/8 <$ [48] Underfull \hbox (badness 10000) in paragraph at lines 91--94 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::[]$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 106--110 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 val ue[]_[]t$\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 const& []$\OML/cmm/m/it/8 <$ \T1/pcr/ m/n/8 data[] Underfull \hbox (badness 10000) in paragraph at lines 115--119 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 val ue[]_[]t$\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 const& []$\OML/cmm/m/it/8 <$ \T1/pcr/ m/n/8 data[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. 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[63] Underfull \hbox (badness 10000) detected at line 129 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 139--141 []\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[ ]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 150--152 []\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[ ]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] [64] Underfull \hbox (badness 10000) in paragraph at lines 164--166 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] ) (./structraptor_1_1hibf_1_1node__data.tex [65]) (./structraptor_1_1pattern__size.tex [66]) (./classraptor_1_1positive__integer__validator.tex [67] [68]) (./structraptor_1_1power__of__two__validator.tex [69]) (./classraptor_1_1raptor__index.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. 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[70] [71] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::vector$\OML/ cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::string$\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/8 c onst& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/p cr/m/n/8 ::bin[]_[]path ( ) [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [74] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [75] [76] [77]) (./classraptor_1_1size__validator.tex [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 96--98 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [80] [81]) (./classraptor_1_1threshold_1_1threshold.tex [82] [83]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [84] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [85] [86]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. [87] Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$\T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[ ]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [88] Underfull \hbox (badness 10000) in paragraph at lines 68--70 \T1/pcr/m/n/8 std[]::string& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layou t[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 79--81 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 101--103 \T1/pcr/m/n/8 std[]::string const& []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[ ]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[] Underfull \hbox (badness 10000) in paragraph at lines 112--114 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [89] Underfull \hbox (badness 10000) in paragraph at lines 123--125 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 134--137 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [90]) [91] [92] Chapter 8. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [93]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [94]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [95]) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [96]) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [97]) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [98]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [99]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [100]) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [101]) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [102]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [103]) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [104]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [105]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [106]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [107]) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [108]) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [109]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [111]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [112]) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [114]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [115]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./argument__parsing_2_c_make_lists_8txt.tex) (./build_2_c_make_lists_8txt.tex) (./build_2hibf_2_c_make_lists_8txt.tex) (./_c_make_lists_8txt.tex) (./search_2_c_make_lists_8txt.tex) (./threshold_2_c_make_lists_8txt.tex) (./upgrade_2_c_make_lists_8txt.tex) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [116]) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 [117]) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [118]) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [119]) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [120] Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 [121] Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] [122]) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [123] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [124] Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./update__user__bins_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--17 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./raptor__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [125]) (./raptor_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./raptor__search_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [126]) (./search__hibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__multiple_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 [127]) (./search__socks_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./multiple__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [128]) (./one__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./one__indirect__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./pascal__row_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [129]) (./precompute__correction_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 8--13 [130] Underfull \hbox (badness 10000) detected at line 36 [][][] ) (./precompute__threshold_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 8--15 Underfull \hbox (badness 10000) detected at line 38 [][][] ) (./raptor__upgrade_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [131]) [132] (./refman.ind Underfull \hbox (badness 10000) in paragraph at lines 6--8 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 12--14 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 \T1/phv/m/n/10 data_layout_mode_ $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 ::membershi p_agent, Underfull \hbox (badness 10000) in paragraph at lines 43--45 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 65--67 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 65--67 \T1/phv/m/n/10 data_layout_mode_ $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 ::membershi p_agent, Underfull \hbox (badness 10000) in paragraph at lines 68--70 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ [133] Underfull \hbox (badness 10000) in paragraph at lines 113--115 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Overfull \hbox (50.05693pt too wide) in paragraph at lines 117--118 []\T1/phv/m/n/10 create_ibfs_from_chopper_pack$\OML/cmm/m/it/10 <$ \T1/phv/m/n/ 10 se-qan3::data_layout::compressed Overfull \hbox (60.06474pt too wide) in paragraph at lines 119--120 []\T1/phv/m/n/10 create_ibfs_from_chopper_pack$\OML/cmm/m/it/10 <$ \T1/phv/m/n/ 10 se-qan3::data_layout::uncompressed Underfull \hbox (badness 10000) in paragraph at lines 125--127 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 146--148 []| \T1/phv/m/n/10 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10000) in paragraph at lines 222--224 []\T1/phv/m/n/10 include/raptor/argument_parsing/build_arguments.hpp, Underfull \hbox (badness 10000) in paragraph at lines 226--228 []\T1/phv/m/n/10 include/raptor/argument_parsing/init_shared_meta.hpp, Underfull \hbox (badness 10000) in paragraph at lines 228--230 []\T1/phv/m/n/10 include/raptor/argument_parsing/parse_bin_path.hpp, Underfull \hbox (badness 10000) in paragraph at lines 232--234 []\T1/phv/m/n/10 include/raptor/argument_parsing/search_parsing.hpp, Underfull \hbox (badness 10000) in paragraph at lines 236--238 []\T1/phv/m/n/10 include/raptor/argument_parsing/upgrade_parsing.hpp, [134] Overfull \hbox (21.03905pt too wide) in paragraph at lines 255--257 []\T1/phv/m/n/10 include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp, Underfull \hbox (badness 10000) in paragraph at lines 259--261 []\T1/phv/m/n/10 include/raptor/build/hibf/initialise_max_bin_kmers.hpp, Underfull \hbox (badness 10000) in paragraph at lines 268--270 []\T1/phv/m/n/10 include/raptor/build/hibf/parse_chopper_pack_line.hpp, Underfull \hbox (badness 10000) in paragraph at lines 270--272 []\T1/phv/m/n/10 include/raptor/build/hibf/read_chopper_pack_file.hpp, Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/phv/m/n/10 include/raptor/hierarchical_interleaved_bloom_filter.hpp, Underfull \hbox (badness 10000) in paragraph at lines 292--294 []\T1/phv/m/n/10 include/raptor/threshold/forward_strand_minimiser.hpp, Underfull \hbox (badness 10000) in paragraph at lines 299--301 []\T1/phv/m/n/10 include/raptor/threshold/one_indirect_error_model.hpp, Underfull \hbox (badness 10000) in paragraph at lines 302--304 []\T1/phv/m/n/10 include/raptor/threshold/precompute_correction.hpp, Underfull \hbox (badness 10000) in paragraph at lines 304--306 []\T1/phv/m/n/10 include/raptor/threshold/precompute_threshold.hpp, Overfull \hbox (22.20251pt too wide) in paragraph at lines 327--328 []\T1/phv/m/n/10 initialise_max_bin_kmers$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 se -qan3::data_layout::compressed Overfull \hbox (32.21033pt too wide) in paragraph at lines 329--330 []\T1/phv/m/n/10 initialise_max_bin_kmers$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 se -qan3::data_layout::uncompressed [135] Underfull \hbox (badness 10000) in paragraph at lines 371--373 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 373--375 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 373--375 \T1/phv/m/n/10 data_layout_mode_ $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 ::membershi p_agent, Underfull \hbox (badness 10000) in paragraph at lines 390--392 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 396--398 []| \T1/phv/m/n/10 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raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 863--865 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 863--865 \T1/phv/m/n/10 data_layout_mode_ $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 ::membershi p_agent, Underfull \hbox (badness 10000) in paragraph at lines 905--907 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 908--910 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ [140] Underfull \hbox (badness 7081) in paragraph at lines 997--998 []\T1/phv/m/n/10 update_user_bins$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 se-qan3::d ata_layout::compressed Underfull \hbox (badness 10000) in paragraph at lines 1009--1011 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 1035--1037 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ [141]) (./refman.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (157 pages, 513113 bytes). Transcript written on refman.log. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu/doc/latex' make[1]: Leaving directory '/<>' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /<>/obj-x86_64-linux-gnu Constructing a list of tests gmake[2]: Entering directory '/<>/obj-x86_64-linux-gnu/test' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /<>/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/rule gmake[3]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 57 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/all gmake[4]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/gtest_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Creating directories for 'gtest_project' cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /<>/obj-x86_64-linux-gnu/test/gtest_project/tmp/gtest_project-mkdirs.cmake cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-mkdir [ 3%] No download step for 'gtest_project' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src && /usr/bin/cmake -E echo_append cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-download [ 5%] No update step for 'gtest_project' cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-update [ 7%] No patch step for 'gtest_project' cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-patch [ 8%] Performing configure step for 'gtest_project' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake --no-warn-unused-cli -DCMAKE_C_COMPILER=/usr/bin/cc "-DCMAKE_C_FLAGS=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/" -DCMAKE_CXX_COMPILER=/usr/bin/c++ "-DCMAKE_CXX_FLAGS=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w" -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_PREFIX=/<>/obj-x86_64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON -DBUILD_GMOCK=0 -DCMAKE_INSTALL_LIBDIR=/<>/obj-x86_64-linux-gnu/lib/ "-GUnix Makefiles" /usr/src/googletest Not searching for unused variables given on the command line. Re-run cmake no build system arguments -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3.10 (found version "3.10.8") found components: Interpreter -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done -- Generating done -- Build files have been written to: /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch 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'/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/DependInfo.cmake --color= gmake[8]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/build gmake[8]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 25%] Building CXX object googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/c++ -I/usr/src/googletest/googletest/include -I/usr/src/googletest/googletest -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /usr/src/googletest/googletest/src/gtest-all.cc [ 50%] Linking CXX static library ../lib/libgtest.a cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libgtest.a "CMakeFiles/gtest.dir/src/gtest-all.cc.o" /usr/bin/ranlib ../lib/libgtest.a gmake[8]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 50%] Built target gtest /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/depend gmake[8]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/DependInfo.cmake --color= gmake[8]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/build gmake[8]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 75%] Building CXX object googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/c++ -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -DGTEST_HAS_PTHREAD=1 -MD -MT googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -MF CMakeFiles/gtest_main.dir/src/gtest_main.cc.o.d -o CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -c /usr/src/googletest/googletest/src/gtest_main.cc [100%] Linking CXX static library ../lib/libgtest_main.a cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -P CMakeFiles/gtest_main.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest_main.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libgtest_main.a CMakeFiles/gtest_main.dir/src/gtest_main.cc.o /usr/bin/ranlib ../lib/libgtest_main.a gmake[8]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [100%] Built target gtest_main gmake[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles 0 gmake[6]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-build [ 12%] Performing install step for 'gtest_project' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/gmake install gmake[6]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -S/usr/src/googletest -B/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[7]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/depend gmake[8]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependencies file "googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gtest gmake[8]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/build gmake[8]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[8]: Nothing to be done for 'googletest/CMakeFiles/gtest.dir/build'. gmake[8]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 50%] Built target gtest /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/depend gmake[8]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/DependInfo.cmake --color= Dependencies file "googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gtest_main gmake[8]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/build gmake[8]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[8]: Nothing to be done for 'googletest/CMakeFiles/gtest_main.dir/build'. gmake[8]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [100%] Built target gtest_main gmake[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[7]: Entering directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[7]: Nothing to be done for 'preinstall'. gmake[7]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/obj-x86_64-linux-gnu/lib/cmake/GTest/GTestTargets.cmake -- Installing: /<>/obj-x86_64-linux-gnu/lib/cmake/GTest/GTestTargets-none.cmake -- Installing: /<>/obj-x86_64-linux-gnu/lib/cmake/GTest/GTestConfigVersion.cmake -- Installing: /<>/obj-x86_64-linux-gnu/lib/cmake/GTest/GTestConfig.cmake -- Installing: /<>/obj-x86_64-linux-gnu/include -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest_prod.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-assertion-result.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-param-test.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-matchers.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/gtest-string.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/gtest-param-util.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/custom -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/custom/README.md -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/custom/gtest-printers.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/custom/gtest-port.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/custom/gtest.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/gtest-port-arch.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/gtest-filepath.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/gtest-death-test-internal.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/gtest-port.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/gtest-type-util.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/internal/gtest-internal.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-test-part.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-message.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest_pred_impl.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-printers.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-typed-test.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-spi.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest.h -- Installing: /<>/obj-x86_64-linux-gnu/include/gtest/gtest-death-test.h -- Installing: /<>/obj-x86_64-linux-gnu/lib/libgtest.a -- Installing: /<>/obj-x86_64-linux-gnu/lib/libgtest_main.a -- Installing: /<>/obj-x86_64-linux-gnu/lib/pkgconfig/gtest.pc -- Installing: /<>/obj-x86_64-linux-gnu/lib/pkgconfig/gtest_main.pc gmake[6]: Leaving directory '/<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-install [ 14%] Completed 'gtest_project' cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/test/CMakeFiles cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/test/CMakeFiles/gtest_project-complete cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /<>/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-done gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 14%] Built target gtest_project /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'CMakeFiles/chopper_project.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target chopper_project /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/argument_parsing /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/argument_parsing /<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_argument_parsing gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target raptor_argument_parsing /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/build /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/build /<>/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= Dependencies file "src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Dependencies file "src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Dependencies file "src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_build gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/CMakeFiles/raptor_build.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target raptor_build /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/build/hibf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/build/hibf /<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_build_hibf gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Built target raptor_build_hibf /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/search /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/search /<>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= Dependencies file "src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_search gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/search/CMakeFiles/raptor_search.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 80%] Built target raptor_search /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/threshold /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/threshold /<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_threshold gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/threshold/CMakeFiles/raptor_threshold.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target raptor_threshold /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/upgrade /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/upgrade /<>/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= Dependencies file "src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_upgrade gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/upgrade/CMakeFiles/raptor_upgrade.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target raptor_upgrade /usr/bin/gmake -f test/api/CMakeFiles/issue_142.dir/build.make test/api/CMakeFiles/issue_142.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/api /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/api /<>/obj-x86_64-linux-gnu/test/api/CMakeFiles/issue_142.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/issue_142.dir/build.make test/api/CMakeFiles/issue_142.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object test/api/CMakeFiles/issue_142.dir/issue_142.cpp.o cd /<>/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/api/CMakeFiles/issue_142.dir/issue_142.cpp.o -MF CMakeFiles/issue_142.dir/issue_142.cpp.o.d -o CMakeFiles/issue_142.dir/issue_142.cpp.o -c /<>/test/api/issue_142.cpp [100%] Linking CXX executable issue_142 cd /<>/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/issue_142.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/issue_142.dir/issue_142.cpp.o -o issue_142 ../../lib/libgtest.a ../../lib/libgtest_main.a ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../lib/libchopper_count_lib.a ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target issue_142 /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/api_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/api_test.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target api_test gmake[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/<>/obj-x86_64-linux-gnu/test' gmake[2]: Entering directory '/<>/obj-x86_64-linux-gnu/test' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /<>/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[3]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 79 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/all gmake[4]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/gtest_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/gtest_project.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target gtest_project /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'CMakeFiles/chopper_project.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 18%] Built target chopper_project /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/upgrade /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/upgrade /<>/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/upgrade/CMakeFiles/raptor_upgrade.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 21%] Built target raptor_upgrade /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/argument_parsing /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/argument_parsing /<>/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target raptor_argument_parsing /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/build /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/build /<>/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/CMakeFiles/raptor_build.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target raptor_build /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/build/hibf /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/build/hibf /<>/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 53%] Built target raptor_build_hibf /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/search /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/search /<>/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/search/CMakeFiles/raptor_search.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 60%] Built target raptor_search /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/threshold /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/threshold /<>/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/threshold/CMakeFiles/raptor_threshold.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 69%] Built target raptor_threshold /usr/bin/gmake -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/raptor.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/raptor.dir/raptor.cpp.o.d" is newer than depends file "/<>/obj-x86_64-linux-gnu/src/CMakeFiles/raptor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/raptor.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target raptor /usr/bin/gmake -f test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build.make test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/upgrade /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/upgrade /<>/obj-x86_64-linux-gnu/test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build.make test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 73%] Building CXX object test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/upgrade && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/upgrade/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -MF CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o.d -o CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -c /<>/test/cli/upgrade/cli_upgrade_test.cpp [ 74%] Linking CXX executable cli_upgrade_test cd /<>/obj-x86_64-linux-gnu/test/cli/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_upgrade_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -o cli_upgrade_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 74%] Built target cli_upgrade_test /usr/bin/gmake -f test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build.make test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/argument_parsing /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/argument_parsing /<>/obj-x86_64-linux-gnu/test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build.make test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building CXX object test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/argument_parsing && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/argument_parsing/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -MF CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o.d -o CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -c /<>/test/cli/argument_parsing/cli_options_test.cpp [ 77%] Linking CXX executable cli_options_test cd /<>/obj-x86_64-linux-gnu/test/cli/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -o cli_options_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target cli_options_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/build /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/build /<>/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 78%] Building CXX object test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -MF CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o.d -o CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -c /<>/test/cli/build/cli_build_hibf_chopper_test.cpp [ 79%] Linking CXX executable cli_build_hibf_chopper_test cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_hibf_chopper_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -o cli_build_hibf_chopper_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target cli_build_hibf_chopper_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/build /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/build /<>/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_hibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 81%] Building CXX object test/cli/build/CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -MF CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o.d -o CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -c /<>/test/cli/build/cli_build_hibf_test.cpp [ 82%] Linking CXX executable cli_build_hibf_test cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_hibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -o cli_build_hibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 82%] Built target cli_build_hibf_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/build /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/build /<>/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 83%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -MF CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o.d -o CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -c /<>/test/cli/build/cli_build_ibf_compressed_test.cpp [ 84%] Linking CXX executable cli_build_ibf_compressed_test cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_compressed_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -o cli_build_ibf_compressed_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 84%] Built target cli_build_ibf_compressed_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/build /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/build /<>/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -MF CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o.d -o CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -c /<>/test/cli/build/cli_build_ibf_partitioned_test.cpp [ 87%] Linking CXX executable cli_build_ibf_partitioned_test cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_partitioned_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -o cli_build_ibf_partitioned_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 87%] Built target cli_build_ibf_partitioned_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/build /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/build /<>/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 88%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -MF CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o.d -o CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -c /<>/test/cli/build/cli_build_ibf_test.cpp [ 89%] Linking CXX executable cli_build_ibf_test cd /<>/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -o cli_build_ibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 89%] Built target cli_build_ibf_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/search /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/search /<>/obj-x86_64-linux-gnu/test/cli/search/CMakeFiles/cli_search_hibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building CXX object test/cli/search/CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -MF CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o.d -o CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -c /<>/test/cli/search/cli_search_hibf_test.cpp [ 92%] Linking CXX executable cli_search_hibf_test cd /<>/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_hibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -o cli_search_hibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 92%] Built target cli_search_hibf_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/search /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/search /<>/obj-x86_64-linux-gnu/test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] Building CXX object test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -MF CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o.d -o CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -c /<>/test/cli/search/cli_search_hibf_preprocessing_test.cpp [ 94%] Linking CXX executable cli_search_hibf_preprocessing_test cd /<>/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_hibf_preprocessing_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -o cli_search_hibf_preprocessing_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target cli_search_hibf_preprocessing_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/search /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/search /<>/obj-x86_64-linux-gnu/test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -MF CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o.d -o CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -c /<>/test/cli/search/cli_search_ibf_preprocessing_test.cpp [ 97%] Linking CXX executable cli_search_ibf_preprocessing_test cd /<>/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_ibf_preprocessing_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -o cli_search_ibf_preprocessing_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target cli_search_ibf_preprocessing_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test/cli/search /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test/cli/search /<>/obj-x86_64-linux-gnu/test/cli/search/CMakeFiles/cli_search_ibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] Building CXX object test/cli/search/CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o cd /<>/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/<>/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/<>/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/<>/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/<>/src/../include -isystem /<>/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /<>/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /<>/lib/chopper/include -isystem /<>/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -MF CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o.d -o CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -c /<>/test/cli/search/cli_search_ibf_test.cpp [100%] Linking CXX executable cli_search_ibf_test cd /<>/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/submodules/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -o cli_search_ibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target cli_search_ibf_test /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/depend gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/cli_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/build gmake[5]: Entering directory '/<>/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/cli_test.dir/build'. gmake[5]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target cli_test gmake[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/<>/obj-x86_64-linux-gnu/test' Error: /<>/obj-x86_64-linux-gnu/test/header is not a directory Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test/api/issue_142 1: Test command: /<>/obj-x86_64-linux-gnu/test/api/issue_142 1: Working Directory: /<>/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: test/cli/argument_parsing/cli_options_test 2: Test command: /<>/obj-x86_64-linux-gnu/test/cli/argument_parsing/cli_options_test 2: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/argument_parsing 2: Test timeout computed to be: 10000000 test 3 Start 3: test/cli/build/cli_build_hibf_chopper_test 3: Test command: /<>/obj-x86_64-linux-gnu/test/cli/build/cli_build_hibf_chopper_test 3: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/build 3: Test timeout computed to be: 10000000 test 4 Start 4: test/cli/build/cli_build_hibf_test 4: Test command: /<>/obj-x86_64-linux-gnu/test/cli/build/cli_build_hibf_test 4: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/build 4: Test timeout computed to be: 10000000 1: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 1: [==========] Running 1 test from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 1 test from issue 1: [ RUN ] issue.142 3: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 3: [==========] Running 1 test from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 1 test from build_hibf_chopper 3: [ RUN ] build_hibf_chopper.pipeline 4: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 4: [==========] Running 25 tests from 2 test suites. 4: [----------] Global test environment set-up. 4: [----------] 1 test from build_hibf 4: [ RUN ] build_hibf.three_levels 2: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 2: [==========] Running 28 tests from 4 test suites. 2: [----------] Global test environment set-up. 2: [----------] 3 tests from argparse_main 2: [ RUN ] argparse_main.no_options 2: [ OK ] argparse_main.no_options (1 ms) 2: [ RUN ] argparse_main.no_subparser 1: [ OK ] issue.142 (4 ms) 1: [----------] 1 test from issue (4 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 1 test from 1 test suite ran. (4 ms total) 1: [ PASSED ] 1 test. 1/12 Test #1: test/api/issue_142 ................................... Passed 0.01 sec test 5 Start 5: test/cli/build/cli_build_ibf_compressed_test 5: Test command: /<>/obj-x86_64-linux-gnu/test/cli/build/cli_build_ibf_compressed_test 5: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/build 5: Test timeout computed to be: 10000000 2: [ OK ] argparse_main.no_subparser (2 ms) 2: [ RUN ] argparse_main.unknown_option 5: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 5: [==========] Running 49 tests from 2 test suites. 5: [----------] Global test environment set-up. 5: [----------] 1 test from build_ibf_compressed 5: [ RUN ] build_ibf_compressed.wrong_compression 5: [ OK ] build_ibf_compressed.wrong_compression (0 ms) 5: [----------] 1 test from build_ibf_compressed (0 ms total) 5: 5: [----------] 48 tests from build_ibf_compressed_suite/build_ibf_compressed 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error 2: [ OK ] argparse_main.unknown_option (2 ms) 2: [----------] 3 tests from argparse_main (7 ms total) 2: 2: [----------] 16 tests from argparse_build 2: [ RUN ] argparse_build.no_options 2: [ OK ] argparse_build.no_options (2 ms) 2: [ RUN ] argparse_build.input_missing 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error (7 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error 3: [ OK ] build_hibf_chopper.pipeline (13 ms) 3: [----------] 1 test from build_hibf_chopper (13 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 1 test from 1 test suite ran. (13 ms total) 3: [ PASSED ] 1 test. 2/12 Test #3: test/cli/build/cli_build_hibf_chopper_test ........... Passed 0.02 sec test 6 Start 6: test/cli/build/cli_build_ibf_partitioned_test 6: Test command: /<>/obj-x86_64-linux-gnu/test/cli/build/cli_build_ibf_partitioned_test 6: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/build 6: Test timeout computed to be: 10000000 2: [ OK ] argparse_build.input_missing (3 ms) 2: [ RUN ] argparse_build.input_invalid 6: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 6: [==========] Running 25 tests from 2 test suites. 6: [----------] Global test environment set-up. 6: [----------] 1 test from build_ibf_partitioned 6: [ RUN ] build_ibf_partitioned.pipeline_misc 2: [ OK ] argparse_build.input_invalid (3 ms) 2: [ RUN ] argparse_build.output_missing 2: [ OK ] argparse_build.output_missing (2 ms) 2: [ RUN ] argparse_build.directory_missing 4: [ OK ] build_hibf.three_levels (21 ms) 4: [----------] 1 test from build_hibf (21 ms total) 4: 4: [----------] 24 tests from build_hibf_suite/build_hibf 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error (9 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error 2: [ OK ] argparse_build.directory_missing (2 ms) 2: [ RUN ] argparse_build.alias 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel (4 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial 2: [ OK ] argparse_build.alias (2 ms) 2: [ RUN ] argparse_build.size_missing 2: [ OK ] argparse_build.size_missing (2 ms) 2: [ RUN ] argparse_build.size_wrong_space 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial (3 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error (9 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error 2: [ OK ] argparse_build.size_wrong_space (2 ms) 2: [ RUN ] argparse_build.size_wrong_suffix 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel (3 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial 2: [ OK ] argparse_build.size_wrong_suffix (2 ms) 2: [ RUN ] argparse_build.kmer_window 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial (3 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel 2: [ OK ] argparse_build.kmer_window (3 ms) 2: [ RUN ] argparse_build.kmer_shape 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error (8 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel (6 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial 2: [ OK ] argparse_build.kmer_shape (7 ms) 2: [ RUN ] argparse_build.zero_threads 2: [ OK ] argparse_build.zero_threads (2 ms) 2: [ RUN ] argparse_build.no_bins_in_file 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial (5 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel 2: [ OK ] argparse_build.no_bins_in_file (2 ms) 2: [ RUN ] argparse_build.empty_file_in_bin 2: [ OK ] argparse_build.empty_file_in_bin (2 ms) 2: [ RUN ] argparse_build.mixed_input 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel (5 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial 2: [ OK ] argparse_build.mixed_input (2 ms) 2: [ RUN ] argparse_build.wrong_parts 2: [ OK ] argparse_build.wrong_parts (2 ms) 2: [----------] 16 tests from argparse_build (50 ms total) 2: 2: [----------] 8 tests from argparse_search 2: [ RUN ] argparse_search.no_options 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial (5 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel 2: [ OK ] argparse_search.no_options (2 ms) 2: [ RUN ] argparse_search.ibf_missing 6: [ OK ] build_ibf_partitioned.pipeline_misc (45 ms) 6: [----------] 1 test from build_ibf_partitioned (45 ms total) 6: 6: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed 2: [ OK ] argparse_search.ibf_missing (2 ms) 2: [ RUN ] argparse_search.ibf_wrong 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error (28 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel (10 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial 2: [ OK ] argparse_search.ibf_wrong (8 ms) 2: [ RUN ] argparse_search.query_missing 2: [ OK ] argparse_search.query_missing (2 ms) 2: [ RUN ] argparse_search.query_wrong 2: [ OK ] argparse_search.query_wrong (10 ms) 2: [ RUN ] argparse_search.output_missing 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial (15 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel 2: [ OK ] argparse_search.output_missing (2 ms) 2: [ RUN ] argparse_search.old_index 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed (27 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed 2: [ OK ] argparse_search.old_index (5 ms) 2: [ RUN ] argparse_search.temporary_warning 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel (9 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error (27 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial (11 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel (3 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial (3 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel 2: [ OK ] argparse_search.temporary_warning (21 ms) 2: [----------] 8 tests from argparse_search (56 ms total) 2: 2: [----------] 1 test from argparse_upgrade 2: [ RUN ] argparse_upgrade.kmer_window 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel (4 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed (29 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed 2: [ OK ] argparse_upgrade.kmer_window (4 ms) 2: [----------] 1 test from argparse_upgrade (4 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 28 tests from 4 test suites ran. (118 ms total) 2: [ PASSED ] 28 tests. 3/12 Test #2: test/cli/argument_parsing/cli_options_test ........... Passed 0.12 sec test 7 Start 7: test/cli/build/cli_build_ibf_test 7: Test command: /<>/obj-x86_64-linux-gnu/test/cli/build/cli_build_ibf_test 7: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/build 7: Test timeout computed to be: 10000000 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial (2 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel 7: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 7: [==========] Running 36 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 36 tests from build_ibf_suite/build_ibf 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel (3 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel (5 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial (2 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error (33 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial (5 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel (3 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial (3 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel (5 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel (7 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial (5 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial (10 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel (11 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error (27 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed (39 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel (7 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial (6 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial (15 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error (21 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel (11 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel (15 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial (8 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error (11 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel (9 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial (13 ms) 4: [----------] 24 tests from build_hibf_suite/build_hibf (177 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 25 tests from 2 test suites ran. (198 ms total) 4: [ PASSED ] 25 tests. 4/12 Test #4: test/cli/build/cli_build_hibf_test ................... Passed 0.20 sec test 8 Start 8: test/cli/search/cli_search_hibf_test 8: Test command: /<>/obj-x86_64-linux-gnu/test/cli/search/cli_search_hibf_test 8: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/search 8: Test timeout computed to be: 10000000 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed (41 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed 8: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 8: [==========] Running 37 tests from 2 test suites. 8: [----------] Global test environment set-up. 8: [----------] 1 test from search_hibf 8: [ RUN ] search_hibf.three_levels 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error (13 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial (10 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel 8: [ OK ] search_hibf.three_levels (6 ms) 8: [----------] 1 test from search_hibf (6 ms total) 8: 8: [----------] 36 tests from search_hibf_suite/search_hibf 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel (4 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error (4 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial (3 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error (13 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error (3 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel (4 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial (3 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel (8 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial (5 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error (21 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel (5 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial (5 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error (35 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel (8 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed (60 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error (23 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error (3 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial (9 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel (8 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error (10 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial (8 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error (33 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_parallel (4 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_serial (3 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_parallel (4 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_serial (3 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error (26 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_parallel (9 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_serial 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed (54 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error (32 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_serial (10 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error (25 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_parallel (10 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error (8 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_serial (8 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error (5 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error (30 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed (38 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_parallel (15 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_serial (14 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error (21 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error (30 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_parallel (11 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_serial 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed (27 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error (16 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_serial (12 ms) 7: [----------] 36 tests from build_ibf_suite/build_ibf (270 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 36 tests from 1 test suite ran. (270 ms total) 7: [ PASSED ] 36 tests. 5/12 Test #7: test/cli/build/cli_build_ibf_test .................... Passed 0.27 sec test 9 Start 9: test/cli/search/cli_search_hibf_preprocessing_test 9: Test command: /<>/obj-x86_64-linux-gnu/test/cli/search/cli_search_hibf_preprocessing_test 9: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/search 9: Test timeout computed to be: 10000000 9: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 9: [==========] Running 48 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error (29 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error (17 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error (6 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (14 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error (5 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed (34 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error (12 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error (5 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (11 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error (3 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error (10 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error (14 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error (6 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error (30 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error (4 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error (10 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error (9 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed (39 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error (5 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error (16 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error (31 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (32 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error (7 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error (7 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error (13 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (27 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error (3 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed (53 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error (33 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error (21 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error (27 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error (34 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel0_error (8 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error (25 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed (50 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial0_error (6 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error (7 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error (28 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error (10 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel0_error (13 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial0_error (11 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (21 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error (25 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed (40 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel0_error (19 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (19 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial0_error (14 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error (0 ms) 5: [----------] 48 tests from build_ibf_compressed_suite/build_ibf_compressed (613 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 49 tests from 2 test suites ran. (614 ms total) 5: [ PASSED ] 31 tests. 5: [ SKIPPED ] 18 tests, listed below: 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error 6/12 Test #5: test/cli/build/cli_build_ibf_compressed_test ......... Passed 0.62 sec test 10 Start 10: test/cli/search/cli_search_ibf_preprocessing_test 10: Test command: /<>/obj-x86_64-linux-gnu/test/cli/search/cli_search_ibf_preprocessing_test 10: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/search 10: Test timeout computed to be: 10000000 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error (23 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error 10: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 10: [==========] Running 49 tests from 2 test suites. 10: [----------] Global test environment set-up. 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error (20 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error 10: [----------] 1 test from search_ibf_preprocessing 10: [ RUN ] search_ibf_preprocessing.pipeline_compressed_index 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error (8 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed (42 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed 10: [ OK ] search_ibf_preprocessing.pipeline_compressed_index (14 ms) 10: [----------] 1 test from search_ibf_preprocessing (15 ms total) 10: 10: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error (11 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error (22 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (12 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error (23 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (14 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error (19 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed (47 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error (24 ms) 8: [----------] 36 tests from search_hibf_suite/search_hibf (482 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 37 tests from 2 test suites ran. (489 ms total) 8: [ PASSED ] 37 tests. 7/12 Test #8: test/cli/search/cli_search_hibf_test ................. Passed 0.49 sec test 11 Start 11: test/cli/search/cli_search_ibf_test 11: Test command: /<>/obj-x86_64-linux-gnu/test/cli/search/cli_search_ibf_test 11: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/search 11: Test timeout computed to be: 10000000 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (42 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error 11: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 11: [==========] Running 49 tests from 2 test suites. 11: [----------] Global test environment set-up. 11: [----------] 1 test from search_ibf 11: [ RUN ] search_ibf.cache_thresholds 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error (15 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error 11: [ OK ] search_ibf.cache_thresholds (30 ms) 11: [----------] 1 test from search_ibf (30 ms total) 11: 11: [----------] 48 tests from search_ibf_suite/search_ibf 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (37 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error (6 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (30 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error (8 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed (49 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error (25 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (37 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error (46 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error (25 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error (27 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error (9 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error (3 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed (67 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error (41 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error (30 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error (35 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (34 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error (26 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (28 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error (17 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error (3 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed (75 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (30 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (22 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error (25 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error (30 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error (36 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed (38 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error (28 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.socks/1_bins_19_window_0_error (4 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_19_window_0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error (25 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.socks/64_bins_19_window_0_error (7 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.socks/128_bins_19_window_0_error (3 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error (4 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error (6 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed (44 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error (45 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error (5 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error (12 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (40 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error (4 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error (6 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error (4 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error (17 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (49 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error (9 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed (64 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (49 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error (12 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error (8 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error (11 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (49 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error (14 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error (39 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error (3 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed (47 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error (22 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error (51 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error (46 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error (26 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error (9 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error (12 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed (72 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (39 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error (22 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error (50 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error (16 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (30 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error (26 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error (11 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error (6 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error (3 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error (17 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed (64 ms) 6: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned (1151 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 25 tests from 2 test suites ran. (1197 ms total) 6: [ PASSED ] 25 tests. 8/12 Test #6: test/cli/build/cli_build_ibf_partitioned_test ........ Passed 1.20 sec test 12 Start 12: test/cli/upgrade/cli_upgrade_test 12: Test command: /<>/obj-x86_64-linux-gnu/test/cli/upgrade/cli_upgrade_test 12: Working Directory: /<>/obj-x86_64-linux-gnu/test/cli/upgrade 12: Test timeout computed to be: 10000000 12: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 12: [==========] Running 3 tests from 1 test suite. 12: [----------] Global test environment set-up. 12: [----------] 3 tests from upgrade 12: [ RUN ] upgrade.ibf 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error (28 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error 12: [ OK ] upgrade.ibf (4 ms) 12: [ RUN ] upgrade.compressed_ibf 12: [ OK ] upgrade.compressed_ibf (4 ms) 12: [ RUN ] upgrade.partitioned_ibf 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error (12 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error (22 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error (22 ms) 11: [----------] 48 tests from search_ibf_suite/search_ibf (524 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 49 tests from 2 test suites ran. (555 ms total) 11: [ PASSED ] 40 tests. 11: [ SKIPPED ] 9 tests, listed below: 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error 9/12 Test #11: test/cli/search/cli_search_ibf_test .................. Passed 0.56 sec 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error (34 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error 12: [ OK ] upgrade.partitioned_ibf (29 ms) 12: [----------] 3 tests from upgrade (38 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 3 tests from 1 test suite ran. (38 ms total) 12: [ PASSED ] 3 tests. 10/12 Test #12: test/cli/upgrade/cli_upgrade_test .................... Passed 0.04 sec 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error (34 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error (27 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (44 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error (25 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (41 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error (30 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error (21 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error (18 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error (50 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error (19 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error (18 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error (49 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error (12 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error (34 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error (10 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error (10 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error (15 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error (35 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error (27 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error (37 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error (27 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error (34 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error (27 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error (28 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error (37 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error (29 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error (23 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error (23 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error (37 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error (23 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error (37 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error (22 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error (46 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error (75 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error (41 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error (44 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error (67 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error (46 ms) 9: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing (1480 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 48 tests from 1 test suite ran. (1480 ms total) 9: [ PASSED ] 48 tests. 11/12 Test #9: test/cli/search/cli_search_hibf_preprocessing_test ... Passed 1.48 sec 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error (78 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error (66 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error (36 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error (30 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error (34 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error (40 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error (71 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error (78 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error (98 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error (92 ms) 10: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing (1826 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 49 tests from 2 test suites ran. (1843 ms total) 10: [ PASSED ] 49 tests. 12/12 Test #10: test/cli/search/cli_search_ibf_preprocessing_test .... Passed 1.85 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 186.69 sec make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/seqan-raptor-2.0.0.0.git.fecfbca\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/raptor -- Installing: /<>/debian/tmp/usr/bin/chopper make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debugedit: debian/seqan-raptor/usr/bin/chopper: Unknown DWARF DW_FORM_0x1f20 49df52a7b91537d19031626d2725faa446fd9e29 debugedit: debian/seqan-raptor/usr/bin/raptor: Unknown DWARF DW_FORM_0x1f20 84c92223016ff536e576096c5fad2580e997760b dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing seqan-raptor (in debian/seqan-raptor); do_strip: , oemstrip: pkgstriptranslations: processing seqan-raptor-doc (in debian/seqan-raptor-doc); do_strip: , oemstrip: pkgstriptranslations: processing seqan-raptor-dbgsym (in debian/.debhelper/seqan-raptor/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/seqan-raptor/DEBIAN/control, package seqan-raptor, directory debian/seqan-raptor pkgstripfiles: processing control file: debian/seqan-raptor-doc/DEBIAN/control, package seqan-raptor-doc, directory debian/seqan-raptor-doc pkgstripfiles: Running PNG optimization (using 4 cpus) for package seqan-raptor ... pkgstripfiles: No PNG files. INFO: pkgstripfiles: waiting for lock (seqan-raptor-doc) ... dpkg-deb: building package 'seqan-raptor' in '../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/seqan-raptor/dbgsym-root/DEBIAN/control, package seqan-raptor-dbgsym, directory debian/.debhelper/seqan-raptor/dbgsym-root dpkg-deb: building package 'seqan-raptor-dbgsym' in 'debian/.debhelper/scratch-space/build-seqan-raptor/seqan-raptor-dbgsym_2.0.0.0.git.fecfbca+ds-3_amd64.deb'. pkgstripfiles: Disabled PNG optimization for -doc package seqan-raptor-doc (to save build time) dpkg-deb: building package 'seqan-raptor-doc' in '../seqan-raptor-doc_2.0.0.0.git.fecfbca+ds-3_all.deb'. Renaming seqan-raptor-dbgsym_2.0.0.0.git.fecfbca+ds-3_amd64.deb to seqan-raptor-dbgsym_2.0.0.0.git.fecfbca+ds-3_amd64.ddeb dpkg-genbuildinfo --build=binary -O../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-06T11:17:40Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ seqan-raptor_2.0.0.0.git.fecfbca+ds-3_amd64.changes: ---------------------------------------------------- Format: 1.8 Date: Tue, 01 Nov 2022 13:00:02 +0100 Source: seqan-raptor Binary: seqan-raptor seqan-raptor-doc Built-For-Profiles: noudeb Architecture: amd64 all Version: 2.0.0.0.git.fecfbca+ds-3 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: seqan-raptor - pre-filter for querying very large collections of nucleotide sequ seqan-raptor-doc - HTML & PDF documentation for seqan-raptor and its APIs Changes: seqan-raptor (2.0.0.0.git.fecfbca+ds-3) unstable; urgency=medium . * Append the CPPFLAGS, not overwrite it * Don't compile with -march=native * Revert: Upstream says doxygen docs aren't ready yet, so skip that for now. * Also include man page for raptor build * d/rules: build hardening * d/control: remove first-person language from the descriptions * d/control: -doc goes in the doc section * d/patches/spelling: fix a typo Checksums-Sha1: 8f3c2e22524e0bd8c88389d462988e76747fb738 13200834 seqan-raptor-dbgsym_2.0.0.0.git.fecfbca+ds-3_amd64.ddeb 4f661970a470a5c8bb57cc61c983c3c0057d0aec 685962 seqan-raptor-doc_2.0.0.0.git.fecfbca+ds-3_all.deb ed9f6b316dca951701792bd8d86b4f5ba4a2af8c 10650 seqan-raptor_2.0.0.0.git.fecfbca+ds-3_amd64.buildinfo ca8a87a1006d447f3c9e43f95a189eb635a32838 578538 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2.0. size 685962 bytes: control archive=12534 bytes. 969 bytes, 20 lines control 47510 bytes, 513 lines md5sums Package: seqan-raptor-doc Source: seqan-raptor Version: 2.0.0.0.git.fecfbca+ds-3 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3805 Section: doc Priority: optional Homepage: https://github.com/seqan/raptor Description: HTML & PDF documentation for seqan-raptor and its APIs Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory. . 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Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1820 Depends: libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libstdc++6 (>= 12.2.0-9ubuntu1), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/seqan/raptor Description: pre-filter for querying very large collections of nucleotide sequences Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory. drwxr-xr-x root/root 0 2022-11-01 12:00 ./ drwxr-xr-x root/root 0 2022-11-01 12:00 ./usr/ drwxr-xr-x root/root 0 2022-11-01 12:00 ./usr/bin/ -rwxr-xr-x root/root 658976 2022-11-01 12:00 ./usr/bin/chopper -rwxr-xr-x root/root 1171008 2022-11-01 12:00 ./usr/bin/raptor drwxr-xr-x root/root 0 2022-11-01 12:00 ./usr/share/ drwxr-xr-x root/root 0 2022-11-01 12:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-11-01 12:00 ./usr/share/doc/seqan-raptor/ -rw-r--r-- root/root 3546 2022-10-18 08:22 ./usr/share/doc/seqan-raptor/README.md.gz -rw-r--r-- root/root 548 2022-11-01 12:00 ./usr/share/doc/seqan-raptor/changelog.Debian.gz -rw-r--r-- root/root 5440 2022-11-01 11:59 ./usr/share/doc/seqan-raptor/copyright drwxr-xr-x root/root 0 2022-11-01 12:00 ./usr/share/man/ drwxr-xr-x root/root 0 2022-11-01 12:00 ./usr/share/man/man1/ -rw-r--r-- root/root 1492 2022-11-01 12:00 ./usr/share/man/man1/raptor-build.1.gz -rw-r--r-- root/root 1330 2022-11-01 12:00 ./usr/share/man/man1/raptor-search.1.gz -rw-r--r-- root/root 1331 2022-11-01 12:00 ./usr/share/man/man1/raptor-socks-build.1.gz -rw-r--r-- root/root 1087 2022-11-01 12:00 ./usr/share/man/man1/raptor-socks-lookup-kmer.1.gz -rw-r--r-- root/root 515 2022-11-01 12:00 ./usr/share/man/man1/raptor-socks.1.gz -rw-r--r-- root/root 993 2022-11-01 12:00 ./usr/share/man/man1/raptor-upgrade.1.gz -rw-r--r-- root/root 1187 2022-11-01 12:00 ./usr/share/man/man1/raptor.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 1526740 Build-Time: 369 Distribution: lunar-proposed Host Architecture: amd64 Install-Time: 35 Job: seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc Machine Architecture: amd64 Package: seqan-raptor Package-Time: 406 Source-Version: 2.0.0.0.git.fecfbca+ds-3 Space: 1526740 Status: successful Version: 2.0.0.0.git.fecfbca+ds-3 -------------------------------------------------------------------------------- Finished at 2022-11-06T11:17:40Z Build needed 00:06:46, 1526740k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24625478 Scanning for processes to kill in build PACKAGEBUILD-24625478