https://launchpad.net/ubuntu/+source/seqan-raptor/3.0.1+ds-5/+build/28433210 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-021 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 16:08:13 UTC 2024 aarch64 Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 18 May 05:31:50 ntpdate[1839]: adjust time server 10.211.37.1 offset 0.000246 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=oracular --arch=armhf PACKAGEBUILD-28433210 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-28433210 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=oracular --arch=armhf PACKAGEBUILD-28433210 Starting target for build PACKAGEBUILD-28433210 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=oracular --arch=armhf PACKAGEBUILD-28433210 'deb http://ftpmaster.internal/ubuntu oracular main universe' Overriding sources.list in build-PACKAGEBUILD-28433210 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=oracular --arch=armhf PACKAGEBUILD-28433210 Updating target for build PACKAGEBUILD-28433210 Get:1 http://ftpmaster.internal/ubuntu oracular InRelease [73.9 kB] Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf Packages [1300 kB] Get:3 http://ftpmaster.internal/ubuntu oracular/main Translation-en [512 kB] Get:4 http://ftpmaster.internal/ubuntu oracular/universe armhf Packages [14.8 MB] Get:5 http://ftpmaster.internal/ubuntu oracular/universe Translation-en [6040 kB] Fetched 22.7 MB in 8s (2738 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libperl5.36* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-14-base gcc-arm-linux-gnueabihf libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 171 upgraded, 23 newly installed, 15 to remove and 0 not upgraded. Need to get 98.9 MB of archives. After this operation, 24.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libtirpc-dev armhf 1.3.4+ds-1.1build1 [184 kB] Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libnsl-dev armhf 1.3.0-3build3 [66.2 kB] Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libnsl2 armhf 1.3.0-3build3 [36.5 kB] Get:5 http://ftpmaster.internal/ubuntu oracular/universe armhf libnss-nisplus armhf 1.3-5build1 [20.1 kB] Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu2 [119 kB] Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libkrb5-3 armhf 1.20.1-6ubuntu2 [321 kB] Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf libk5crypto3 armhf 1.20.1-6ubuntu2 [78.6 kB] Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libkrb5support0 armhf 1.20.1-6ubuntu2 [31.4 kB] Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf openssl armhf 3.0.13-0ubuntu3 [974 kB] Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf libacl1 armhf 2.3.2-1build1 [15.1 kB] Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu3 [45.1 kB] Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf libcap-ng0 armhf 0.8.4-2build2 [13.6 kB] Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf libaudit1 armhf 1:3.1.2-2.1build1 [44.4 kB] Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf libblkid1 armhf 2.39.3-9ubuntu6 [160 kB] Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf libcap2 armhf 1:2.66-5ubuntu2 [25.8 kB] Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB] Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf libcrypt1 armhf 1:4.4.36-4build1 [92.6 kB] Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf libgpg-error-l10n all 1.47-3build2 [8064 B] Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf libgpg-error0 armhf 1.47-3build2 [61.6 kB] Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf libgcrypt20 armhf 1.10.3-2build1 [454 kB] Get:23 http://ftpmaster.internal/ubuntu oracular/main armhf liblzma5 armhf 5.6.1+really5.4.5-1 [111 kB] Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf libzstd1 armhf 1.5.5+dfsg2-2build1 [265 kB] Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf libkmod2 armhf 31+20240202-2ubuntu7 [45.1 kB] Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf liblz4-1 armhf 1.9.4-1build1 [58.0 kB] Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf libpcre2-8-0 armhf 10.42-4ubuntu2 [198 kB] Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf libselinux1 armhf 3.5-2ubuntu2 [70.9 kB] Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf libmount1 armhf 2.39.3-9ubuntu6 [171 kB] Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-7 [662 kB] Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf libgdbm6t64 armhf 1.23-5.1build1 [30.3 kB] Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf libgdbm-compat4t64 armhf 1.23-5.1build1 [6216 B] Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf libperl5.38t64 armhf 5.38.2-3.2build2 [4109 kB] Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf perl armhf 5.38.2-3.2build2 [231 kB] Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf perl-base armhf 5.38.2-3.2build2 [1671 kB] Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu5 [15.1 kB] Get:38 http://ftpmaster.internal/ubuntu oracular/main armhf libtext-iconv-perl armhf 1.7-8build3 [12.7 kB] Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf libtext-charwidth-perl armhf 0.04-11build3 [8992 B] Get:40 http://ftpmaster.internal/ubuntu oracular/universe armhf libnss-nis armhf 3.1-0ubuntu7 [23.1 kB] Get:41 http://ftpmaster.internal/ubuntu oracular/main armhf libc-dev-bin armhf 2.39-0ubuntu8 [19.1 kB] Get:42 http://ftpmaster.internal/ubuntu oracular/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf libc6-dev armhf 2.39-0ubuntu8 [1352 kB] Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf libc6 armhf 2.39-0ubuntu8 [2828 kB] Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf libc-bin armhf 2.39-0ubuntu8 [530 kB] Get:46 http://ftpmaster.internal/ubuntu oracular/main armhf libsystemd-shared armhf 255.4-1ubuntu8 [2010 kB] Get:47 http://ftpmaster.internal/ubuntu oracular/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu4 [238 kB] Get:48 http://ftpmaster.internal/ubuntu oracular/main armhf libssl3t64 armhf 3.0.13-0ubuntu3 [1558 kB] Get:49 http://ftpmaster.internal/ubuntu oracular/main armhf systemd-dev all 255.4-1ubuntu8 [104 kB] Get:50 http://ftpmaster.internal/ubuntu oracular/main armhf systemd-sysv armhf 255.4-1ubuntu8 [11.9 kB] Get:51 http://ftpmaster.internal/ubuntu oracular/main armhf systemd armhf 255.4-1ubuntu8 [3501 kB] Get:52 http://ftpmaster.internal/ubuntu oracular/main armhf libsystemd0 armhf 255.4-1ubuntu8 [410 kB] Get:53 http://ftpmaster.internal/ubuntu oracular/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu5 [47.0 kB] Get:54 http://ftpmaster.internal/ubuntu oracular/main armhf libpam-modules armhf 1.5.3-5ubuntu5 [260 kB] Get:55 http://ftpmaster.internal/ubuntu oracular/main armhf libapt-pkg6.0t64 armhf 2.7.14build2 [986 kB] Get:56 http://ftpmaster.internal/ubuntu oracular/main armhf libnettle8t64 armhf 3.9.1-2.2build1 [187 kB] Get:57 http://ftpmaster.internal/ubuntu oracular/main armhf libhogweed6t64 armhf 3.9.1-2.2build1 [187 kB] Get:58 http://ftpmaster.internal/ubuntu oracular/main armhf libp11-kit0 armhf 0.25.3-4ubuntu2 [258 kB] Get:59 http://ftpmaster.internal/ubuntu oracular/main armhf libunistring5 armhf 1.2-1 [521 kB] Get:60 http://ftpmaster.internal/ubuntu oracular/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu3 [947 kB] Get:61 http://ftpmaster.internal/ubuntu oracular/main armhf apt armhf 2.7.14build2 [1368 kB] Get:62 http://ftpmaster.internal/ubuntu oracular/main armhf apt-utils armhf 2.7.14build2 [210 kB] Get:63 http://ftpmaster.internal/ubuntu oracular/main armhf bzip2 armhf 1.0.8-5.1 [33.5 kB] Get:64 http://ftpmaster.internal/ubuntu oracular/main armhf libbz2-1.0 armhf 1.0.8-5.1 [31.1 kB] Get:65 http://ftpmaster.internal/ubuntu oracular/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu2 [49.2 kB] Get:66 http://ftpmaster.internal/ubuntu oracular/main armhf debconf-i18n all 1.5.86ubuntu1 [205 kB] Get:67 http://ftpmaster.internal/ubuntu oracular/main armhf debconf all 1.5.86ubuntu1 [124 kB] Get:68 http://ftpmaster.internal/ubuntu oracular/main armhf libpam0g armhf 1.5.3-5ubuntu5 [62.1 kB] Get:69 http://ftpmaster.internal/ubuntu oracular/main armhf libseccomp2 armhf 2.5.5-1ubuntu3 [49.5 kB] Get:70 http://ftpmaster.internal/ubuntu oracular/main armhf libargon2-1 armhf 0~20190702+dfsg-4build1 [22.6 kB] Get:71 http://ftpmaster.internal/ubuntu oracular/main armhf libudev1 armhf 255.4-1ubuntu8 [167 kB] Get:72 http://ftpmaster.internal/ubuntu oracular/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu3 [135 kB] Get:73 http://ftpmaster.internal/ubuntu oracular/main armhf libjson-c5 armhf 0.17-1build1 [31.3 kB] Get:74 http://ftpmaster.internal/ubuntu oracular/main armhf libuuid1 armhf 2.39.3-9ubuntu6 [34.7 kB] Get:75 http://ftpmaster.internal/ubuntu oracular/main armhf libfdisk1 armhf 2.39.3-9ubuntu6 [196 kB] Get:76 http://ftpmaster.internal/ubuntu oracular/main armhf mount armhf 2.39.3-9ubuntu6 [133 kB] Get:77 http://ftpmaster.internal/ubuntu oracular/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu4 [21.9 kB] Get:78 http://ftpmaster.internal/ubuntu oracular/main armhf libkeyutils1 armhf 1.6.3-3build1 [8236 B] Get:79 http://ftpmaster.internal/ubuntu oracular/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1build1 [73.3 kB] Get:80 http://ftpmaster.internal/ubuntu oracular/main armhf linux-libc-dev armhf 6.8.0-31.31 [1557 kB] Get:81 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-14-base armhf 14-20240412-0ubuntu1 [47.6 kB] Get:82 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-s1 armhf 14-20240412-0ubuntu1 [41.5 kB] Get:83 http://ftpmaster.internal/ubuntu oracular/main armhf base-files armhf 13.1ubuntu1 [73.6 kB] Get:84 http://ftpmaster.internal/ubuntu oracular/main armhf debianutils armhf 5.17build1 [89.0 kB] Get:85 http://ftpmaster.internal/ubuntu oracular/main armhf bash armhf 5.2.21-2ubuntu4 [668 kB] Get:86 http://ftpmaster.internal/ubuntu oracular/main armhf bsdutils armhf 1:2.39.3-9ubuntu6 [102 kB] Get:87 http://ftpmaster.internal/ubuntu oracular/main armhf coreutils armhf 9.4-3ubuntu6 [1280 kB] Get:88 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++6 armhf 14-20240412-0ubuntu1 [714 kB] Get:89 http://ftpmaster.internal/ubuntu oracular/main armhf libxxhash0 armhf 0.8.2-2build1 [31.5 kB] Get:90 http://ftpmaster.internal/ubuntu oracular/main armhf libgmp10 armhf 2:6.3.0+dfsg-2ubuntu6 [207 kB] Get:91 http://ftpmaster.internal/ubuntu oracular/main armhf libffi8 armhf 3.4.6-1build1 [21.2 kB] Get:92 http://ftpmaster.internal/ubuntu oracular/main armhf libidn2-0 armhf 2.3.7-2build1 [96.2 kB] Get:93 http://ftpmaster.internal/ubuntu oracular/main armhf libtasn1-6 armhf 4.19.0-3build1 [37.2 kB] Get:94 http://ftpmaster.internal/ubuntu oracular/main armhf libdebconfclient0 armhf 0.271ubuntu3 [10.9 kB] Get:95 http://ftpmaster.internal/ubuntu oracular/main armhf base-passwd armhf 3.6.3build1 [50.9 kB] Get:96 http://ftpmaster.internal/ubuntu oracular/main armhf libassuan0 armhf 2.5.6-1build1 [31.3 kB] Get:97 http://ftpmaster.internal/ubuntu oracular/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu2 [590 kB] Get:98 http://ftpmaster.internal/ubuntu oracular/main armhf gpg armhf 2.4.4-2ubuntu17 [524 kB] Get:99 http://ftpmaster.internal/ubuntu oracular/main armhf gpg-agent armhf 2.4.4-2ubuntu17 [235 kB] Get:100 http://ftpmaster.internal/ubuntu oracular/main armhf gpgconf armhf 2.4.4-2ubuntu17 [115 kB] Get:101 http://ftpmaster.internal/ubuntu oracular/main armhf readline-common all 8.2-4build1 [56.5 kB] Get:102 http://ftpmaster.internal/ubuntu oracular/main armhf libncursesw6 armhf 6.4+20240113-1ubuntu2 [119 kB] Get:103 http://ftpmaster.internal/ubuntu oracular/main armhf libtinfo6 armhf 6.4+20240113-1ubuntu2 [90.8 kB] Get:104 http://ftpmaster.internal/ubuntu oracular/main armhf libreadline8t64 armhf 8.2-4build1 [129 kB] Get:105 http://ftpmaster.internal/ubuntu oracular/main armhf pinentry-curses armhf 1.2.1-3ubuntu5 [36.7 kB] Get:106 http://ftpmaster.internal/ubuntu oracular/main armhf init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:107 http://ftpmaster.internal/ubuntu oracular/main armhf libnpth0t64 armhf 1.6-3.1build1 [6998 B] Get:108 http://ftpmaster.internal/ubuntu oracular/main armhf gpgv armhf 2.4.4-2ubuntu17 [224 kB] Get:109 http://ftpmaster.internal/ubuntu oracular/main armhf ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:110 http://ftpmaster.internal/ubuntu oracular/main armhf tar armhf 1.35+dfsg-3build1 [236 kB] Get:111 http://ftpmaster.internal/ubuntu oracular/main armhf dpkg armhf 1.22.6ubuntu6 [1230 kB] Get:112 http://ftpmaster.internal/ubuntu oracular/main armhf dash armhf 0.5.12-6ubuntu5 [80.8 kB] Get:113 http://ftpmaster.internal/ubuntu oracular/main armhf diffutils armhf 1:3.10-1build1 [167 kB] Get:114 http://ftpmaster.internal/ubuntu oracular/main armhf findutils armhf 4.9.0-5build1 [293 kB] Get:115 http://ftpmaster.internal/ubuntu oracular/main armhf grep armhf 3.11-4build1 [157 kB] Get:116 http://ftpmaster.internal/ubuntu oracular/main armhf gzip armhf 1.12-1ubuntu3 [95.8 kB] Get:117 http://ftpmaster.internal/ubuntu oracular/main armhf hostname armhf 3.23+nmu2ubuntu2 [10.4 kB] Get:118 http://ftpmaster.internal/ubuntu oracular/main armhf login armhf 1:4.13+dfsg1-4ubuntu3 [200 kB] Get:119 http://ftpmaster.internal/ubuntu oracular/main armhf ncurses-bin armhf 6.4+20240113-1ubuntu2 [178 kB] Get:120 http://ftpmaster.internal/ubuntu oracular/main armhf sed armhf 4.9-2build1 [190 kB] Get:121 http://ftpmaster.internal/ubuntu oracular/main armhf util-linux armhf 2.39.3-9ubuntu6 [1216 kB] Get:122 http://ftpmaster.internal/ubuntu oracular/main armhf ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:123 http://ftpmaster.internal/ubuntu oracular/main armhf sysvinit-utils armhf 3.08-6ubuntu3 [33.8 kB] Get:124 http://ftpmaster.internal/ubuntu oracular/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu4 [22.0 kB] Get:125 http://ftpmaster.internal/ubuntu oracular/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu4 [202 kB] Get:126 http://ftpmaster.internal/ubuntu oracular/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu4 [571 kB] Get:127 http://ftpmaster.internal/ubuntu oracular/main armhf optipng armhf 0.7.8+ds-1build2 [109 kB] Get:128 http://ftpmaster.internal/ubuntu oracular/main armhf libpng16-16t64 armhf 1.6.43-5build1 [166 kB] Get:129 http://ftpmaster.internal/ubuntu oracular/main armhf init armhf 1.66ubuntu1 [6186 B] Get:130 http://ftpmaster.internal/ubuntu oracular/main armhf libsmartcols1 armhf 2.39.3-9ubuntu6 [117 kB] Get:131 http://ftpmaster.internal/ubuntu oracular/main armhf uuid-runtime armhf 2.39.3-9ubuntu6 [41.8 kB] Get:132 http://ftpmaster.internal/ubuntu oracular/main armhf libattr1 armhf 1:2.5.2-1build1 [10.2 kB] Get:133 http://ftpmaster.internal/ubuntu oracular/main armhf libmd0 armhf 1.1.0-2build1 [23.0 kB] Get:134 http://ftpmaster.internal/ubuntu oracular/main armhf libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB] Get:135 http://ftpmaster.internal/ubuntu oracular/main armhf libsemanage-common all 3.5-1build5 [10.1 kB] Get:136 http://ftpmaster.internal/ubuntu oracular/main armhf libsepol2 armhf 3.5-2build1 [263 kB] Get:137 http://ftpmaster.internal/ubuntu oracular/main armhf libsemanage2 armhf 3.5-1build5 [84.5 kB] Get:138 http://ftpmaster.internal/ubuntu oracular/main armhf passwd armhf 1:4.13+dfsg1-4ubuntu3 [817 kB] Get:139 http://ftpmaster.internal/ubuntu oracular/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu3 [49.0 kB] Get:140 http://ftpmaster.internal/ubuntu oracular/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu4 [14.7 kB] Get:141 http://ftpmaster.internal/ubuntu oracular/main armhf mawk armhf 1.3.4.20240123-1build1 [115 kB] Get:142 http://ftpmaster.internal/ubuntu oracular/main armhf procps armhf 2:4.0.4-4ubuntu3 [700 kB] Get:143 http://ftpmaster.internal/ubuntu oracular/main armhf sensible-utils all 0.0.22 [22.5 kB] Get:144 http://ftpmaster.internal/ubuntu oracular/main armhf ca-certificates all 20240203 [159 kB] Get:145 http://ftpmaster.internal/ubuntu oracular/main armhf krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:146 http://ftpmaster.internal/ubuntu oracular/main armhf tzdata all 2024a-2ubuntu1 [273 kB] Get:147 http://ftpmaster.internal/ubuntu oracular/main armhf bash-completion all 1:2.11-8 [180 kB] Get:148 http://ftpmaster.internal/ubuntu oracular/main armhf bsdextrautils armhf 2.39.3-9ubuntu6 [78.7 kB] Get:149 http://ftpmaster.internal/ubuntu oracular/main armhf libgpm2 armhf 1.20.7-11 [13.6 kB] Get:150 http://ftpmaster.internal/ubuntu oracular/main armhf libip4tc2 armhf 1.8.10-3ubuntu2 [21.3 kB] Get:151 http://ftpmaster.internal/ubuntu oracular/main armhf libjansson4 armhf 2.14-2build2 [28.2 kB] Get:152 http://ftpmaster.internal/ubuntu oracular/main armhf psmisc armhf 23.7-1build1 [176 kB] Get:153 http://ftpmaster.internal/ubuntu oracular/main armhf xz-utils armhf 5.6.1+really5.4.5-1 [267 kB] Get:154 http://ftpmaster.internal/ubuntu oracular/main armhf advancecomp armhf 2.5-1build1 [198 kB] Get:155 http://ftpmaster.internal/ubuntu oracular/main armhf libctf0 armhf 2.42-4ubuntu2 [87.7 kB] Get:156 http://ftpmaster.internal/ubuntu oracular/main armhf libctf-nobfd0 armhf 2.42-4ubuntu2 [88.0 kB] Get:157 http://ftpmaster.internal/ubuntu oracular/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu2 [2925 kB] Get:158 http://ftpmaster.internal/ubuntu oracular/main armhf libbinutils armhf 2.42-4ubuntu2 [460 kB] Get:159 http://ftpmaster.internal/ubuntu oracular/main armhf binutils armhf 2.42-4ubuntu2 [3072 B] Get:160 http://ftpmaster.internal/ubuntu oracular/main armhf binutils-common armhf 2.42-4ubuntu2 [217 kB] Get:161 http://ftpmaster.internal/ubuntu oracular/main armhf libsframe1 armhf 2.42-4ubuntu2 [13.1 kB] Get:162 http://ftpmaster.internal/ubuntu oracular/main armhf libubsan1 armhf 14-20240412-0ubuntu1 [1154 kB] Get:163 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14-20240412-0ubuntu1 [125 kB] Get:164 http://ftpmaster.internal/ubuntu oracular/main armhf libatomic1 armhf 14-20240412-0ubuntu1 [7816 B] Get:165 http://ftpmaster.internal/ubuntu oracular/main armhf libasan8 armhf 14-20240412-0ubuntu1 [2942 kB] Get:166 http://ftpmaster.internal/ubuntu oracular/main armhf g++-13 armhf 13.2.0-23ubuntu4 [14.5 kB] Get:167 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13 armhf 13.2.0-23ubuntu4 [453 kB] Get:168 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++-13-dev armhf 13.2.0-23ubuntu4 [2456 kB] Get:169 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-13-dev armhf 13.2.0-23ubuntu4 [899 kB] Get:170 http://ftpmaster.internal/ubuntu oracular/main armhf libcc1-0 armhf 14-20240412-0ubuntu1 [39.0 kB] Get:171 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-13 armhf 13.2.0-23ubuntu4 [1034 B] Get:172 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13-base armhf 13.2.0-23ubuntu4 [48.9 kB] Get:173 http://ftpmaster.internal/ubuntu oracular/main armhf libisl23 armhf 0.26-3build1 [544 kB] Get:174 http://ftpmaster.internal/ubuntu oracular/main armhf libmpfr6 armhf 4.2.1-1build1 [229 kB] Get:175 http://ftpmaster.internal/ubuntu oracular/main armhf libmpc3 armhf 1.3.1-1build1 [46.7 kB] Get:176 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [16.9 MB] Get:177 http://ftpmaster.internal/ubuntu oracular/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [9941 kB] Get:178 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [8759 kB] Get:179 http://ftpmaster.internal/ubuntu oracular/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B] Get:180 http://ftpmaster.internal/ubuntu oracular/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B] Get:181 http://ftpmaster.internal/ubuntu oracular/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB] Get:182 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B] Get:183 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B] Get:184 http://ftpmaster.internal/ubuntu oracular/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B] Get:185 http://ftpmaster.internal/ubuntu oracular/main armhf dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:186 http://ftpmaster.internal/ubuntu oracular/main armhf libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:187 http://ftpmaster.internal/ubuntu oracular/main armhf patch armhf 2.7.6-7build3 [110 kB] Get:188 http://ftpmaster.internal/ubuntu oracular/main armhf make armhf 4.3-4.1build2 [162 kB] Get:189 http://ftpmaster.internal/ubuntu oracular/main armhf lto-disabled-list all 48 [12.3 kB] Get:190 http://ftpmaster.internal/ubuntu oracular/main armhf libfakeroot armhf 1.33-1 [28.7 kB] Get:191 http://ftpmaster.internal/ubuntu oracular/main armhf fakeroot armhf 1.33-1 [68.6 kB] Get:192 http://ftpmaster.internal/ubuntu oracular/main armhf liblockfile-bin armhf 1.17-1build3 [10.5 kB] Get:193 http://ftpmaster.internal/ubuntu oracular/main armhf liblockfile1 armhf 1.17-1build3 [6208 B] Get:194 http://ftpmaster.internal/ubuntu oracular/main armhf lockfile-progs armhf 0.1.19+nmu1 [8410 B] Preconfiguring packages ... 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(both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_armhf.deb ... Unpacking libbz2-1.0:armhf (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:armhf (1.0.8-5.1) ... (Reading database ... 14953 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu2_armhf.deb ... Unpacking zlib1g:armhf (1:1.3.dfsg-3.1ubuntu2) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu2) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Preparing to unpack .../5-linux-libc-dev_6.8.0-31.31_armhf.deb ... Unpacking linux-libc-dev:armhf (6.8.0-31.31) over (6.5.0-9.9) ... Selecting previously unselected package gcc-14-base:armhf. Preparing to unpack .../6-gcc-14-base_14-20240412-0ubuntu1_armhf.deb ... Unpacking gcc-14-base:armhf (14-20240412-0ubuntu1) ... Setting up gcc-14-base:armhf (14-20240412-0ubuntu1) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240412-0ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (14-20240412-0ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:armhf (14-20240412-0ubuntu1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4build1) ... Preparing to unpack .../pinentry-curses_1.2.1-3ubuntu5_armhf.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu5) over (1.2.1-1ubuntu1) ... Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu4) ... (Reading database ... 14977 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu4_armhf.deb ... 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Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu4) ... Setting up libfdisk1:armhf (2.39.3-9ubuntu6) ... Setting up libkmod2:armhf (31+20240202-2ubuntu7) ... Setting up libsystemd-shared:armhf (255.4-1ubuntu8) ... Setting up systemd-dev (255.4-1ubuntu8) ... Setting up mount (2.39.3-9ubuntu6) ... Setting up systemd (255.4-1ubuntu8) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255.4-1ubuntu8) ... (Reading database ... 14976 files and directories currently installed.) 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Setting up libgdbm-compat4t64:armhf (1.23-5.1build1) ... Setting up psmisc (23.7-1build1) ... Setting up libtirpc-common (1.3.4+ds-1.1build1) ... Setting up libsqlite3-0:armhf (3.45.1-1ubuntu2) ... Setting up binutils-common:armhf (2.42-4ubuntu2) ... Setting up linux-libc-dev:armhf (6.8.0-31.31) ... Setting up libctf-nobfd0:armhf (2.42-4ubuntu2) ... Setting up krb5-locales (1.20.1-6ubuntu2) ... Setting up libgomp1:armhf (14-20240412-0ubuntu1) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:armhf (2.42-4ubuntu2) ... Setting up libfakeroot:armhf (1.33-1) ... Setting up libjansson4:armhf (2.14-2build2) ... Setting up libkrb5support0:armhf (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-2ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat May 18 05:33:15 UTC 2024. Universal Time is now: Sat May 18 05:33:15 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... Setting up gcc-13-base:armhf (13.2.0-23ubuntu4) ... Setting up make (4.3-4.1build2) ... Setting up libmpfr6:armhf (4.2.1-1build1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build2) ... Setting up libproc2-0:armhf (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:armhf (1.6.43-5build1) ... Setting up libmpc3:armhf (1.3.1-1build1) ... Setting up libatomic1:armhf (14-20240412-0ubuntu1) ... Setting up patch (2.7.6-7build3) ... Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu4) ... Setting up libncursesw6:armhf (6.4+20240113-1ubuntu2) ... Setting up libk5crypto3:armhf (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu4) ... Setting up libdb5.3t64:armhf (5.3.28+dfsg2-7) ... Setting up libubsan1:armhf (14-20240412-0ubuntu1) ... Setting up advancecomp (2.5-1build1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:armhf (1:4.4.36-4build1) ... Setting up libasan8:armhf (14-20240412-0ubuntu1) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1build1) ... Setting up libkrb5-3:armhf (1.20.1-6ubuntu2) ... Setting up liblockfile1:armhf (1.17-1build3) ... Setting up libperl5.38t64:armhf (5.38.2-3.2build2) ... Setting up libbinutils:armhf (2.42-4ubuntu2) ... Setting up libisl23:armhf (0.26-3build1) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build2) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:armhf (14-20240412-0ubuntu1) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up libctf0:armhf (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... Setting up debconf-i18n (1.5.86ubuntu1) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19+nmu1) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:armhf (8.2-4build1) ... Setting up libgcc-13-dev:armhf (13.2.0-23ubuntu4) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:armhf (2.39-0ubuntu8) ... Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu2) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up libstdc++-13-dev:armhf (13.2.0-23ubuntu4) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-23ubuntu4) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.1build1) ... Setting up binutils (2.42-4ubuntu2) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu4) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:armhf (1.3.0-3build3) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-23ubuntu4) ... Setting up libnss-nisplus:armhf (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up libnss-nis:armhf (3.1-0ubuntu7) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:armhf (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15019 files and directories currently installed.) Purging configuration files for libssl3:armhf (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28433210 armhf oracular -c chroot:build-PACKAGEBUILD-28433210 --arch=armhf --dist=oracular --nolog seqan-raptor_3.0.1+ds-5.dsc Initiating build PACKAGEBUILD-28433210 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 16:08:13 UTC 2024 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-021.buildd +==============================================================================+ | seqan-raptor 3.0.1+ds-5 (armhf) Sat, 18 May 2024 05:33:32 +0000 | +==============================================================================+ Package: seqan-raptor Version: 3.0.1+ds-5 Source Version: 3.0.1+ds-5 Distribution: oracular Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28433210/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/seqan-raptor-gjt6Be/resolver-0JlgWi' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- seqan-raptor_3.0.1+ds-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/seqan-raptor-gjt6Be/seqan-raptor-3.0.1+ds' with '<>' I: NOTICE: Log filtering will replace 'build/seqan-raptor-gjt6Be' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen, cppreference-doc-en-html, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen, cppreference-doc-en-html, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [960 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [529 B] Get:5 copy:/<>/apt_archive ./ Packages [603 B] Fetched 2092 B in 0s (56.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data cppreference-doc-en-html debhelper debugedit dh-autoreconf dh-strip-nondeterminism doxygen dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern fonts-urw-base35 gettext gettext-base ghostscript googletest groff-base intltool-debian libapache-pom-java libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcereal-dev libclang-cpp18 libclang1-18 libcommons-logging-java libcommons-parent-java libcups2t64 libcurl4t64 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1t64 libedit2 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfmt9 libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64 libgraphite2-3 libgs-common libgs10 libgs10-common libgtest-dev libharfbuzz0b libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkpathsea6 libldap2 liblerc4 libllvm18 libmagic-mgc libmagic1t64 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpkgconf3 libpotrace0 libpsl5t64 libptexenc1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan3-dev libsharpyuv0 libsimde-dev libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtiff6 libtool libuchardet0 libuv1t64 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6t64 libxxhash-dev libyaml-cpp-dev libyaml-cpp0.8 libzzip-0-13t64 lynx lynx-common m4 man-db media-types netbase pkg-config pkgconf pkgconf-bin po-debconf poppler-data preview-latex-style python3 python3-minimal python3.12 python3.12-minimal rapidjson-dev t1utils tex-common texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils xfonts-encodings xfonts-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui graphviz fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java cups-common low-memory-monitor libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk python3-venv python3.12-venv python3.12-doc binfmt-support rapidjson-doc perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview lcdf-typetools psutils texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex default-jre-headless Recommended packages: bzip2-doc dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libldap-common publicsuffix libssl3 libsasl2-modules libltdl-dev mailcap libmail-sendmail-perl lmodern dvisvgm ps2eps tex-gyre tipa default-jre libspreadsheet-parseexcel-perl ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data cppreference-doc-en-html debhelper debugedit dh-autoreconf dh-strip-nondeterminism doxygen dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern fonts-urw-base35 gettext gettext-base ghostscript googletest groff-base intltool-debian libapache-pom-java libarchive-zip-perl libarchive13t64 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcereal-dev libclang-cpp18 libclang1-18 libcommons-logging-java libcommons-parent-java libcups2t64 libcurl4t64 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1t64 libedit2 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfmt9 libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64 libgraphite2-3 libgs-common libgs10 libgs10-common libgtest-dev libharfbuzz0b libice6 libicu74 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkpathsea6 libldap2 liblerc4 libllvm18 libmagic-mgc libmagic1t64 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpkgconf3 libpotrace0 libpsl5t64 libptexenc1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan3-dev libsharpyuv0 libsimde-dev libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtiff6 libtool libuchardet0 libuv1t64 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6t64 libxxhash-dev libyaml-cpp-dev libyaml-cpp0.8 libzzip-0-13t64 lynx lynx-common m4 man-db media-types netbase pkg-config pkgconf pkgconf-bin po-debconf poppler-data preview-latex-style python3 python3-minimal python3.12 python3.12-minimal rapidjson-dev sbuild-build-depends-main-dummy t1utils tex-common texlive-base texlive-binaries texlive-font-utils texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils xfonts-encodings xfonts-utils zlib1g-dev 0 upgraded, 164 newly installed, 0 to remove and 0 not upgraded. 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0.8.0+dfsg-6build1 [177 kB] Get:146 http://ftpmaster.internal/ubuntu oracular/universe armhf libzzip-0-13t64 armhf 0.13.72+dfsg.1-1.2build1 [24.4 kB] Get:147 http://ftpmaster.internal/ubuntu oracular/main armhf pkgconf-bin armhf 1.8.1-2build1 [20.7 kB] Get:148 http://ftpmaster.internal/ubuntu oracular/main armhf pkgconf armhf 1.8.1-2build1 [16.8 kB] Get:149 http://ftpmaster.internal/ubuntu oracular/main armhf pkg-config armhf 1.8.1-2build1 [7264 B] Get:150 http://ftpmaster.internal/ubuntu oracular/universe armhf tex-common all 6.18 [32.8 kB] Get:151 http://ftpmaster.internal/ubuntu oracular/universe armhf preview-latex-style all 13.2-1 [347 kB] Get:152 http://ftpmaster.internal/ubuntu oracular/main armhf t1utils armhf 1.41-4build3 [51.8 kB] Get:153 http://ftpmaster.internal/ubuntu oracular/universe armhf texlive-binaries armhf 2023.20230311.66589-9build3 [7160 kB] Get:154 http://ftpmaster.internal/ubuntu oracular/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:155 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[19.2 MB] Get:164 http://ftpmaster.internal/ubuntu oracular/universe armhf texlive-plain-generic all 2023.20240207-1 [29.0 MB] Preconfiguring packages ... Fetched 248 MB in 15s (16.4 MB/s) Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... 15019 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.3-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.3-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.1-2build1_armhf.deb ... Unpacking libexpat1:armhf (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.3-1_armhf.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Setting up libpython3.12-minimal:armhf (3.12.3-1) ... Setting up libexpat1:armhf (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15337 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.3-0ubuntu1_armhf.deb ... 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Setting up file (1:5.45-3build1) ... Setting up googletest (1.14.0-1) ... Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... Setting up libelf1t64:armhf (0.190-1.1build4) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.2) ... Setting up poppler-data (0.4.12-1) ... Setting up libdw1t64:armhf (0.190-1.1build4) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu3) ... Setting up libfontenc1:armhf (1:1.1.8-1build1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.80.0-6ubuntu1) ... No schema files found: doing nothing. Setting up libpkgconf3:armhf (1.8.1-2build1) ... Setting up libzzip-0-13t64:armhf (0.13.72+dfsg.1-1.2build1) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1build3) ... Setting up libx11-data (2:1.8.7-1build1) ... Setting up libjbig2dec0:armhf (0.20-1build3) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build7) ... Setting up libteckit0:armhf (2.5.12+ds1-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:armhf (0.8-13ubuntu6) ... Setting up libdbus-1-3:armhf (1.14.10-4ubuntu4) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up t1utils (1.41-4build3) ... Setting up libtexlua53-5:armhf (2023.20230311.66589-9build3) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libidn12:armhf (1.42-1build1) ... Setting up autopoint (0.21-14ubuntu2) ... Setting up libjsoncpp25:armhf (1.9.5-6build1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up ucf (3.0043+nmu1) ... Setting up pkgconf-bin (1.8.1-2build1) ... Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... Setting up lynx-common (2.9.1-1) ... Setting up libkpathsea6:armhf (2023.20230311.66589-9build3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu3) ... Setting up libssh-4:armhf (0.10.6-2build2) ... Setting up autoconf (2.71-3) ... Setting up libxxhash-dev:armhf (0.8.2-2build1) ... Setting up libwebp7:armhf (1.3.2-0.4build3) ... Setting up libfmt9:armhf (9.1.0+ds1-2) ... Setting up libicu74:armhf (74.2-1ubuntu3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu2) ... Setting up dwz (0.15-1build6) ... Setting up librhash0:armhf (1.4.3-3build1) ... Setting up libuchardet0:armhf (0.0.8-1build1) ... Setting up debugedit (1:5.0-5build2) ... Setting up fonts-lmodern (2.005-1) ... Setting up libopenjp2-7:armhf (2.5.0-2build3) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2build2) ... Setting up netbase (6.4) ... Setting up cmake-data (3.28.3-1build7) ... Setting up libbsd0:armhf (0.12.1-1build1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu3) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu8) ... Setting up libsynctex2:armhf (2023.20230311.66589-9build3) ... Setting up libbz2-dev:armhf (1.0.8-5.1) ... Setting up libpotrace0:armhf (1.16-2build1) ... Setting up libjpeg8:armhf (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libpaper1:armhf (1.1.29build1) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build3) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu6) ... Setting up libxcb1:armhf (1.15-1ubuntu2) ... Setting up gettext (0.21-14ubuntu2) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libpython3.12-stdlib:armhf (3.12.3-1) ... Setting up libgtest-dev:armhf (1.14.0-1) ... Setting up libcurl4t64:armhf (8.5.0-2ubuntu10) ... Setting up libtool (2.4.7-7build1) ... Setting up libxcb-render0:armhf (1.15-1ubuntu2) ... Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... Setting up python3.12 (3.12.3-1) ... Setting up libedit2:armhf (3.1-20230828-1build1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:armhf (0.8-13ubuntu6) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... Setting up libxcb-shm0:armhf (1.15-1ubuntu2) ... Setting up libpaper-utils (1.1.29build1) ... Setting up xfonts-utils (1:7.7+6build3) ... Setting up pkgconf:armhf (1.8.1-2build1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libptexenc1:armhf (2023.20230311.66589-9build3) ... Setting up pkg-config:armhf (1.8.1-2build1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu2) ... Setting up libx11-6:armhf (2:1.8.7-1build1) ... Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... Setting up lynx (2.9.1-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libsm6:armhf (2:1.2.3-1build3) ... Setting up libarchive13t64:armhf (3.7.2-2) ... Setting up libavahi-client3:armhf (0.8-13ubuntu6) ... Setting up libpython3-stdlib:armhf (3.12.3-0ubuntu1) ... Setting up libllvm18:armhf (1:18.1.3-1) ... Setting up libclang1-18 (1:18.1.3-1) ... Setting up libxpm4:armhf (1:3.5.17-1build2) ... Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (13.2-1) ... Setting up libseqan3-dev (3.3.0+ds-1) ... Setting up libxext6:armhf (2:1.3.4-1build2) ... Setting up python3 (3.12.3-0ubuntu1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up man-db (2.12.0-4build2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libcairo2:armhf (1.18.0-3build1) ... Setting up libxt6t64:armhf (1:1.2.1-1.2build1) ... Setting up cppreference-doc-en-html (20170409-2) ... Setting up cmake (3.28.3-1build7) ... Setting up libclang-cpp18 (1:18.1.3-1) ... Setting up libcups2t64:armhf (2.4.7-1.2ubuntu7) ... Setting up libgs10-common (10.02.1~dfsg1-0ubuntu7) ... Setting up libxmu6:armhf (2:1.1.3-3build2) ... Setting up libxi6:armhf (2:1.8.1-1build1) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up libxaw7:armhf (2:1.0.14-1build2) ... Setting up doxygen (1.9.8+ds-2build5) ... Setting up texlive-binaries (2023.20230311.66589-9build3) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgs10:armhf (10.02.1~dfsg1-0ubuntu7) ... Setting up texlive-plain-generic (2023.20240207-1) ... Setting up texlive-font-utils (2023.20240207-1) ... Setting up ghostscript (10.02.1~dfsg1-0ubuntu7) ... Setting up texlive-latex-base (2023.20240207-1) ... Setting up texlive-latex-recommended (2023.20240207-1) ... Setting up texlive-pictures (2023.20240207-1) ... Setting up texlive-fonts-recommended (2023.20240207-1) ... Setting up texlive-latex-extra (2023.20240207-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.4-1ubuntu8) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 16:08:13 UTC 2024 arm64 (armv7l) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu4 gcc-13_13.2.0-23ubuntu4 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 linux-libc-dev_6.8.0-31.31 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13.1ubuntu1 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-arm-linux-gnueabihf_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 cmake_3.28.3-1build7 cmake-data_3.28.3-1build7 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu4 cpp-13-arm-linux-gnueabihf_13.2.0-23ubuntu4 cpp-arm-linux-gnueabihf_4:13.2.0-7ubuntu1 cppreference-doc-en-html_20170409-2 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 doxygen_1.9.8+ds-2build5 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5build1 fontconfig-config_2.15.0-1.1ubuntu2 fonts-dejavu-core_2.37-8 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libreadline8t64_8.2-4build1 librhash0_1.4.3-3build1 librtmp1_2.4+20151223.gitfa8646d.1-2build7 libsasl2-2_2.1.28+dfsg1-5ubuntu3 libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libseqan3-dev_3.3.0+ds-1 libsframe1_2.42-4ubuntu2 libsharpyuv0_1.3.2-0.4build3 libsimde-dev_0.7.2-6 libsm6_2:1.2.3-1build3 libsmartcols1_2.39.3-9ubuntu6 libsqlite3-0_3.45.1-1ubuntu2 libss2_1.47.0-2.4~exp1ubuntu4 libssh-4_0.10.6-2build2 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-23ubuntu4 libstdc++6_14-20240412-0ubuntu1 libsub-override-perl_0.10-1 libsynctex2_2023.20230311.66589-9build3 libsystemd-shared_255.4-1ubuntu8 libsystemd0_255.4-1ubuntu8 libtasn1-6_4.19.0-3build1 libteckit0_2.5.12+ds1-1 libtexlua53-5_2023.20230311.66589-9build3 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtiff6_4.5.1+git230720-4ubuntu2 libtinfo6_6.4+20240113-1ubuntu2 libtirpc-common_1.3.4+ds-1.1build1 libtirpc-dev_1.3.4+ds-1.1build1 libtirpc3t64_1.3.4+ds-1.1build1 libtool_2.4.7-7build1 libubsan1_14-20240412-0ubuntu1 libuchardet0_0.0.8-1build1 libudev1_255.4-1ubuntu8 libunistring2_1.0-2 libunistring5_1.2-1 libuuid1_2.39.3-9ubuntu6 libuv1t64_1.48.0-1.1build1 libwebp7_1.3.2-0.4build3 libx11-6_2:1.8.7-1build1 libx11-data_2:1.8.7-1build1 libxapian30_1.4.22-1build1 libxau6_1:1.0.9-1build6 libxaw7_2:1.0.14-1build2 libxcb-render0_1.15-1ubuntu2 libxcb-shm0_1.15-1ubuntu2 libxcb1_1.15-1ubuntu2 libxdmcp6_1:1.1.3-0ubuntu6 libxext6_2:1.3.4-1build2 libxi6_2:1.8.1-1build1 libxml2_2.9.14+dfsg-1.3ubuntu3 libxmu6_2:1.1.3-3build2 libxpm4_1:3.5.17-1build2 libxrender1_1:0.9.10-1.1build1 libxt6t64_1:1.2.1-1.2build1 libxxhash-dev_0.8.2-2build1 libxxhash0_0.8.2-2build1 libyaml-cpp-dev_0.8.0+dfsg-6build1 libyaml-cpp0.8_0.8.0+dfsg-6build1 libzstd1_1.5.5+dfsg2-2build1 libzzip-0-13t64_0.13.72+dfsg.1-1.2build1 linux-libc-dev_6.8.0-31.31 lockfile-progs_0.1.19+nmu1 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_48 lynx_2.9.1-1 lynx-common_2.9.1-1 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.0-4build2 mawk_1.3.4.20240123-1build1 media-types_10.1.0 mount_2.39.3-9ubuntu6 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 netbase_6.4 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkg-config_1.8.1-2build1 pkgbinarymangler_154 pkgconf_1.8.1-2build1 pkgconf-bin_1.8.1-2build1 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 poppler-data_0.4.12-1 preview-latex-style_13.2-1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 python3_3.12.3-0ubuntu1 python3-minimal_3.12.3-0ubuntu1 python3.12_3.12.3-1 python3.12-minimal_3.12.3-1 rapidjson-dev_1.1.0+dfsg2-7.2 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 systemd_255.4-1ubuntu8 systemd-dev_255.4-1ubuntu8 systemd-sysv_255.4-1ubuntu8 sysvinit-utils_3.08-6ubuntu3 t1utils_1.41-4build3 tar_1.35+dfsg-3build1 tex-common_6.18 texlive-base_2023.20240207-1 texlive-binaries_2023.20230311.66589-9build3 texlive-font-utils_2023.20240207-1 texlive-fonts-recommended_2023.20240207-1 texlive-latex-base_2023.20240207-1 texlive-latex-extra_2023.20240207-1 texlive-latex-recommended_2023.20240207-1 texlive-pictures_2023.20240207-1 texlive-plain-generic_2023.20240207-1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 ucf_3.0043+nmu1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 x11-common_1:7.7+23ubuntu3 xdg-utils_1.1.3-4.1ubuntu3 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build3 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-raptor Binary: seqan-raptor, seqan-raptor-doc Architecture: any all Version: 3.0.1+ds-5 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/raptor Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/seqan-raptor Vcs-Git: https://salsa.debian.org/med-team/seqan-raptor.git Testsuite: autopkgtest Testsuite-Triggers: cmake, cwltool, g++, libgtest-dev, libseqan3-dev, libsimde-dev, libxxhash-dev, libyaml-cpp-dev, nodejs, patch, pkg-config, python3-setuptools Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.3.0~rc.1), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkg-config, doxygen , cppreference-doc-en-html , texlive-font-utils , texlive-latex-base , texlive-latex-recommended , texlive-latex-extra , texlive-plain-generic , texlive-fonts-recommended , ghostscript Package-List: seqan-raptor deb science optional arch=any seqan-raptor-doc deb doc optional arch=all profile=!nodoc Checksums-Sha1: a298b4c8b0b5ab15c49315e97dee322b95069357 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz 7ef2860a79f904e93fc00eac3cc6857fb6854b91 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz Checksums-Sha256: 3fb5f987f3c0e678d5de41ab3f9f66eae37ba5993edb294caa9e8f2c6132a55d 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz f841e6322018fe1148e249c14bd6807ea1354c220c7d3be298785372d0a7c5c2 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz Files: 650d23e7c16c308dcc95dbc6d302df1f 3085184 seqan-raptor_3.0.1+ds.orig.tar.xz f64b145c2eb3faeda15aab4b80c083bd 10260 seqan-raptor_3.0.1+ds-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmT4eQ8ACgkQPCZ2P2xn 5uJmwxAAlivqo6IGLyaO8L23pZwtsq6NL64C9CwA6nSYsjK0igFujGGjpClmFTP5 FB0p01w494ZZJ5WezVDvIvPP7ghV2r2+hyewuvL0RQJI7OOvF9c9mosI6Ta+szpw meT5tVXZ95LAxXQJg1MIY0Y7OJ6T5JJP2jZLS2+T/S7Ye6FiLTNWDTGhbXo5pyry usNTXNCo/mYs/Yr6tbZC+oPXSOFco09Uz6K6q+6wFLLeCZBfMGUMQG8qUMnQW1Gv 1ATXRWsvjOoeiRh8r/tq3dnWO7C3F86njvO4y6S6O1mTVFRsc0ep9uKcIoviG4So MsX1yKFlsYo0QUPPohtKWnC3ZzNZ6FPrVSMJ+4ItyLGahEgQbty/ePW08HqQjJak LMXtlF4wtuL2szIQr5uxGnDw6pheuByzmRwAVrsiVuIvT2NZZqyz4pzWSD04wfb0 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debian_cppreference dpkg-source: info: applying doxygen_update Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28433210 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28433210 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28433210 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package seqan-raptor dpkg-buildpackage: info: source version 3.0.1+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean-arch make[1]: Entering directory '/<>' dh_auto_clean dh_auto_clean --sourcedirectory=test/unit --builddirectory build_unit #dh_auto_clean --sourcedirectory=test/performance --builddirectory build_performance #dh_auto_clean --sourcedirectory=test/header --builddirectory build_header dh_auto_clean --sourcedirectory=test/snippet --builddirectory build_snippet make[1]: Leaving directory '/<>' debian/rules override_dh_auto_clean-indep make[1]: Entering directory '/<>' dh_auto_clean --indep --builddir doc_build make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' dh_auto_configure -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<>/lib -DRAPTOR_STRIP_BINARY=OFF cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<>/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF .. -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning (dev) at build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /<>/include -- Detected as running from a repository checkout… -- …adding submodule include: /<>/lib/chopper/include -- …adding submodule include: /<>/lib/robin-hood-hashing/src/include -- …adding submodule include: /<>/lib/sharg-parser/include -- …adding submodule include: /<>/lib/sharg-parser/test/include -- …adding submodule include: /<>/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 CMake Warning (dev) at lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): build_system/raptor-config.cmake:227 (find_package) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: disabled -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /<>/include -- Finding program ccache -- Finding program ccache - Failed CMake Warning (dev) at /usr/share/cmake/seqan3/seqan3-config-version.cmake:87 (message): SeqAn3 does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): lib/chopper/CMakeLists.txt:60 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): lib/chopper/CMakeLists.txt:89 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Configuring done (16.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_configure --sourcedirectory=test/unit --builddirectory build_unit -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<>/lib -DRAPTOR_STRIP_BINARY=OFF cd build_unit && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<>/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/unit -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning (dev) at /<>/build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/test/raptor-test.cmake:15 (find_package) CMakeLists.txt:12 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /<>/include -- Detected as running from a repository checkout… -- …adding submodule include: /<>/lib/chopper/include -- …adding submodule include: /<>/lib/robin-hood-hashing/src/include -- …adding submodule include: /<>/lib/sharg-parser/include -- …adding submodule include: /<>/lib/sharg-parser/test/include -- …adding submodule include: /<>/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 CMake Warning (dev) at /<>/lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/build_system/raptor-config.cmake:227 (find_package) /<>/test/raptor-test.cmake:15 (find_package) CMakeLists.txt:12 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: disabled -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /<>/include CMake Warning (dev) at /<>/build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/test/raptor-test.cmake:16 (include) CMakeLists.txt:12 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding program ccache -- Finding program ccache - Failed CMake Warning (dev) at /usr/share/cmake/seqan3/seqan3-config-version.cmake:87 (message): SeqAn3 does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/lib/chopper/CMakeLists.txt:60 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /<>/lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/lib/chopper/CMakeLists.txt:89 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Test dependency: Google Test 1.14.0 found. -- Configuring done (17.5s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/build_unit #dh_auto_configure --sourcedirectory=test/performance --builddirectory build_performance -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<>/lib -DRAPTOR_STRIP_BINARY=OFF #dh_auto_configure --sourcedirectory=test/header --builddirectory build_header -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<>/lib -DRAPTOR_STRIP_BINARY=OFF dh_auto_configure --sourcedirectory=test/snippet --builddirectory build_snippet -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<>/lib -DRAPTOR_STRIP_BINARY=OFF cd build_snippet && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/<>/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/snippet -- The CXX compiler identification is GNU 13.2.0 -- The C compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Warning (dev) at /<>/build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/test/raptor-test.cmake:15 (find_package) CMakeLists.txt:11 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding RAPTOR and checking requirements: -- RAPTOR include dir found: /<>/include -- Detected as running from a repository checkout… -- …adding submodule include: /<>/lib/chopper/include -- …adding submodule include: /<>/lib/robin-hood-hashing/src/include -- …adding submodule include: /<>/lib/sharg-parser/include -- …adding submodule include: /<>/lib/sharg-parser/test/include -- …adding submodule include: /<>/lib/submodules/lemon/include -- C++ Standard-20 support: via -std=c++20 CMake Warning (dev) at /<>/lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/build_system/raptor-config.cmake:227 (find_package) /<>/test/raptor-test.cmake:15 (find_package) CMakeLists.txt:11 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- OpenMP Support: via -fopenmp -- SIMD-OpenMP Support: via -fopenmp-simd -- Suppressing GCC 4 warnings: via -Wno-psabi -- Optimize build: disabled -- Link Time Optimization: enabled -- Binary-stripping: disabled -- Thread support: builtin -- Optional dependency: ZLIB-1.3 found -- Optional dependency: BZip2-1.0.8 found -- Optional dependency: libexecinfo found -- Found Raptor: /<>/include CMake Warning (dev) at /<>/build_system/raptor-config-version.cmake:93 (message): Raptor does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/test/raptor-test.cmake:16 (include) CMakeLists.txt:11 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Finding program ccache -- Finding program ccache - Failed CMake Warning (dev) at /usr/share/cmake/seqan3/seqan3-config-version.cmake:87 (message): SeqAn3 does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/lib/chopper/CMakeLists.txt:60 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /<>/lib/sharg-parser/build_system/sharg-config-version.cmake:87 (message): B.I.O. does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): /<>/lib/chopper/CMakeLists.txt:89 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- You can run `make` to build the application. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.2 -- Test dependency: Google Test 1.14.0 found. -- Configuring done (17.5s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/build_snippet make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build --arch cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/upgrade /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src/upgrade /<>/obj-arm-linux-gnueabihf/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/chopper /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/_deps/raptor_chopper_project-build /<>/obj-arm-linux-gnueabihf/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/argument_parsing /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src/argument_parsing /<>/obj-arm-linux-gnueabihf/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/prepare /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src/prepare /<>/obj-arm-linux-gnueabihf/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build [ 1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o cd /<>/obj-arm-linux-gnueabihf/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /<>/src/upgrade/raptor_upgrade.cpp [ 1%] Built target xxhash_project make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/build/hibf /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src/build/hibf /<>/obj-arm-linux-gnueabihf/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color=" [ 3%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o cd /<>/obj-arm-linux-gnueabihf/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -c /<>/src/build/hibf/parse_chopper_pack_line.cpp [ 5%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build cd /<>/obj-arm-linux-gnueabihf/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /<>/src/prepare/compute_minimiser.cpp make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 7%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o cd /<>/obj-arm-linux-gnueabihf/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /<>/src/build/hibf/bin_size_in_bits.cpp [ 9%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o cd /<>/obj-arm-linux-gnueabihf/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /<>/src/argument_parsing/build_parsing.cpp In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /<>/src/prepare/compute_minimiser.cpp:15: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ [ 11%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o cd /<>/obj-arm-linux-gnueabihf/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /<>/src/build/hibf/chopper_build.cpp In file included from /<>/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:28, from /<>/src/build/hibf/chopper_build.cpp:13: /<>/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /<>/lib/submodules/lemon/include/lemon/core.h:45, from /<>/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_helper.hpp:21, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector.hpp:24, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp:16, from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:18, from /<>/include/raptor/build/hibf/chopper_build.hpp:15, from /<>/src/build/hibf/chopper_build.cpp:15: /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/uint128_t.hpp:19:56: error: unable to emulate ‘TI’ 19 | typedef unsigned int uint128_t __attribute__((mode(TI))); | ^ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /<>/include/raptor/argument_parsing/validators.hpp:17, from /<>/src/upgrade/raptor_upgrade.cpp:14: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /<>/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, from /<>/src/build/hibf/chopper_build.cpp:16: /<>/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /<>/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /<>/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes /<>/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /<>/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: *** [src/prepare/CMakeFiles/raptor_prepare.dir/build.make:79: src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o] Error 1 make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:551: src/prepare/CMakeFiles/raptor_prepare.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 13%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o cd /<>/obj-arm-linux-gnueabihf/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /<>/src/build/hibf/compute_kmers.cpp In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /<>/include/raptor/argument_parsing/validators.hpp:17, from /<>/src/argument_parsing/build_parsing.cpp:23: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_helper.hpp:21, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector.hpp:24, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp:16, from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:18, from /<>/include/raptor/hierarchical_interleaved_bloom_filter.hpp:17, from /<>/include/raptor/index.hpp:18, from /<>/include/raptor/upgrade/index_upgrader.hpp:16, from /<>/src/upgrade/raptor_upgrade.cpp:16: /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/uint128_t.hpp:19:56: error: unable to emulate ‘TI’ 19 | typedef unsigned int uint128_t __attribute__((mode(TI))); | ^ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ make[4]: *** [src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make:93: src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... [ 15%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o cd /<>/obj-arm-linux-gnueabihf/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /<>/src/argument_parsing/compute_bin_size.cpp In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /<>/include/raptor/file_reader.hpp:15, from /<>/src/build/hibf/compute_kmers.cpp:17: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /usr/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp:15, from /usr/include/seqan3/alphabet/aminoacid/aa27.hpp:17, from /usr/include/seqan3/io/sequence_file/input.hpp:23, from /<>/include/raptor/dna4_traits.hpp:15, from /<>/src/argument_parsing/compute_bin_size.cpp:19: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ make[4]: *** [src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make:107: src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o] Error 1 make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:472: src/build/hibf/CMakeFiles/raptor_build_hibf.dir/all] Error 2 [ 17%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o cd /<>/obj-arm-linux-gnueabihf/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/<>/include -isystem /<>/lib/sharg-parser/test/include -isystem /<>/lib/robin-hood-hashing/src/include -isystem /<>/lib/chopper/include -isystem /<>/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/seqan-raptor-3.0.1+ds-5 -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=3 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/<>/lib/sharg-parser/include/ -I/<>/lib/submodules/lemon/include/ -pedantic -Wall -Wextra -std=c++20 -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /<>/src/argument_parsing/init_shared_meta.cpp make[4]: *** [src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make:107: src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: *** [src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make:79: src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o] Error 1 make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:603: src/upgrade/CMakeFiles/raptor_upgrade.dir/all] Error 2 make[4]: *** [src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make:93: src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o] Error 1 make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:420: src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/all] Error 2 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[2]: *** [Makefile:139: all] Error 2 make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:30: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:13: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-05-18T05:49:45Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 39064 Build-Time: 194 Distribution: oracular Fail-Stage: build Host Architecture: armhf Install-Time: 775 Job: seqan-raptor_3.0.1+ds-5.dsc Machine Architecture: arm64 Package: seqan-raptor Package-Time: 973 Source-Version: 3.0.1+ds-5 Space: 39064 Status: attempted Version: 3.0.1+ds-5 -------------------------------------------------------------------------------- Finished at 2024-05-18T05:49:45Z Build needed 00:16:13, 39064k disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=oracular --arch=armhf PACKAGEBUILD-28433210 Scanning for processes to kill in build PACKAGEBUILD-28433210