https://launchpad.net/ubuntu/+source/seqprep/1.3.2-5/+build/18591281 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-050 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:07:23 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 20 Jan 17:22:26 ntpdate[1873]: adjust time server 10.211.37.1 offset -0.182915 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18591281 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18591281 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18591281 Starting target for build PACKAGEBUILD-18591281 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18591281 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18591281 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18591281 Updating target for build PACKAGEBUILD-18591281 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [931 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [500 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8315 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5135 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [128 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [63.7 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [459 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [246 kB] Fetched 16.4 MB in 7s (2400 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libctf-nobfd0 libctf0 libffi7 libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin openssl perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 92 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 56.5 MB of archives. After this operation, 50.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main armhf linux-libc-dev armhf 5.4.0-11.14 [1086 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22-2 [460 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcc1-0 armhf 9.2.1-24ubuntu1 [34.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libctf-nobfd0 armhf 2.33.50.20200114-0ubuntu1 [104 kB] Get:7 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libctf0 armhf 2.33.50.20200114-0ubuntu1 [37.2 kB] Get:8 http://ftpmaster.internal/ubuntu focal-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.33.50.20200114-0ubuntu1 [2091 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libbinutils armhf 2.33.50.20200114-0ubuntu1 [316 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main armhf binutils-common armhf 2.33.50.20200114-0ubuntu1 [2021 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main armhf binutils armhf 2.33.50.20200114-0ubuntu1 [70.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9-base armhf 9.2.1-24ubuntu1 [19.0 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc1 armhf 1:9.2.1-24ubuntu1 [37.4 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgomp1 armhf 9.2.1-24ubuntu1 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libatomic1 armhf 9.2.1-24ubuntu1 [7080 B] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libasan5 armhf 9.2.1-24ubuntu1 [387 kB] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libubsan1 armhf 9.2.1-24ubuntu1 [119 kB] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/main armhf g++-9 armhf 9.2.1-24ubuntu1 [6683 kB] Get:19 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libstdc++-9-dev armhf 9.2.1-24ubuntu1 [1779 kB] Get:20 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc-9-dev armhf 9.2.1-24ubuntu1 [687 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9 armhf 9.2.1-24ubuntu1 [6535 kB] Get:22 http://ftpmaster.internal/ubuntu focal-proposed/main armhf cpp-9 armhf 9.2.1-24ubuntu1 [5875 kB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libstdc++6 armhf 9.2.1-24ubuntu1 [451 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-5ubuntu1 [576 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf bsdutils armhf 1:2.34-0.1ubuntu5 [58.3 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.1+20191019-1ubuntu1 [163 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf libblkid1 armhf 2.34-0.1ubuntu5 [125 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf libuuid1 armhf 2.34-0.1ubuntu5 [19.7 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf libfdisk1 armhf 2.34-0.1ubuntu5 [163 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libselinux1 armhf 3.0-1 [60.1 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libmount1 armhf 2.34-0.1ubuntu5 [135 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.1+20191019-1ubuntu1 [79.7 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.1+20191019-1ubuntu1 [72.8 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.1+20191019-1ubuntu1 [106 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libsmartcols1 armhf 2.34-0.1ubuntu5 [89.1 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf fdisk armhf 2.34-0.1ubuntu5 [109 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf util-linux armhf 2.34-0.1ubuntu5 [957 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libdebconfclient0 armhf 0.250ubuntu2 [5776 B] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.30-0ubuntu3 [496 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-1ubuntu1 [19.2 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/main armhf systemd-sysv armhf 244-3ubuntu5 [9364 B] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu1 [29.4 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libcap-ng0 armhf 0.7.9-2.1 [9692 B] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu5 [35.9 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libcap2 armhf 1:2.27-1 [12.7 kB] Get:65 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libudev1 armhf 244-3ubuntu5 [69.1 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.155-2ubuntu7 [118 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-6 [25.6 kB] Get:68 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libssl1.1 armhf 1.1.1d-2ubuntu3 [1080 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-1ubuntu1 [163 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:72 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libffi7 armhf 3.3-3 [16.5 kB] Get:73 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libp11-kit0 armhf 0.23.18.1-2build1 [167 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.15.0-2 [33.0 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2ubuntu2 [733 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf libkmod2 armhf 26-3ubuntu1 [37.0 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libseccomp2 armhf 2.4.2-2ubuntu2 [32.5 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf mount armhf 2.34-0.1ubuntu5 [108 kB] Get:80 http://ftpmaster.internal/ubuntu focal-proposed/main armhf systemd armhf 244-3ubuntu5 [3532 kB] Get:81 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsystemd0 armhf 244-3ubuntu5 [240 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-1 [207 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.7 [774 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 1.9.7 [1236 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage-common all 3.0-1 [9880 B] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage1 armhf 3.0-1 [73.9 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf libsqlite3-0 armhf 3.30.1-1ubuntu1 [460 kB] Get:95 http://ftpmaster.internal/ubuntu focal-proposed/main armhf openssl armhf 1.1.1d-2ubuntu3 [595 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.5 MB in 2s (26.0 MB/s) (Reading database ... 12487 files and directories currently installed.) 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Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:armhf (5.30.0-9) ... Setting up libisl22:armhf (0.22-2) ... Setting up liblockfile1:armhf (1.16-1.1) ... Setting up libjson-c4:armhf (0.13.1+dfsg-6) ... Setting up libbinutils:armhf (2.33.50.20200114-0ubuntu1) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up openssl (1.1.1d-2ubuntu3) ... Setting up libcc1-0:armhf (9.2.1-24ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up libkmod2:armhf (26-3ubuntu1) ... Setting up libctf0:armhf (2.33.50.20200114-0ubuntu1) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libgcc-9-dev:armhf (9.2.1-24ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-24ubuntu1) ... Setting up libc6-dev:armhf (2.30-0ubuntu3) ... Setting up libcryptsetup12:armhf (2:2.2.2-1ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.33.50.20200114-0ubuntu1) ... Setting up libstdc++-9-dev:armhf (9.2.1-24ubuntu1) ... Setting up systemd (244-3ubuntu5) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.33.50.20200114-0ubuntu1) ... Setting up gcc-9 (9.2.1-24ubuntu1) ... Setting up systemd-sysv (244-3ubuntu5) ... Setting up g++-9 (9.2.1-24ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18591281 armhf focal-proposed -c chroot:build-PACKAGEBUILD-18591281 --arch=armhf --dist=focal-proposed --nolog seqprep_1.3.2-5.dsc Initiating build PACKAGEBUILD-18591281 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:07:23 UTC 2019 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-050.buildd +==============================================================================+ | seqprep 1.3.2-5 (armhf) 20 Jan 2020 17:23 | +==============================================================================+ Package: seqprep Version: 1.3.2-5 Source Version: 1.3.2-5 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/seqprep-PrFvWY/seqprep-1.3.2' with '<>' I: NOTICE: Log filtering will replace 'build/seqprep-PrFvWY' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18591281/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- seqprep_1.3.2-5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-mxe6Nh/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-mxe6Nh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-mxe6Nh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-mxe6Nh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-mxe6Nh/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-mxe6Nh/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (79.1 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-mxe6Nh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (60.4 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14548 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), python3, markdown, zlib1g-dev Filtered Build-Depends: debhelper-compat (= 12), python3, markdown, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-seqprep-dummy' in '/<>/resolver-YPGftH/apt_archive/sbuild-build-depends-seqprep-dummy.deb'. Ign:1 copy:/<>/resolver-YPGftH/apt_archive ./ InRelease Get:2 copy:/<>/resolver-YPGftH/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-YPGftH/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-YPGftH/apt_archive ./ Sources [237 B] Get:5 copy:/<>/resolver-YPGftH/apt_archive ./ Packages [555 B] Fetched 2911 B in 0s (69.3 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install seqprep build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db markdown mime-support po-debconf python3 python3-minimal python3.7 python3.7-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.7-venv python3.7-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db markdown mime-support po-debconf python3 python3-minimal python3.7 python3.7-minimal sbuild-build-depends-seqprep-dummy zlib1g-dev 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 20.6 MB of archives. After this operation, 80.2 MB of additional disk space will be used. Get:1 copy:/<>/resolver-YPGftH/apt_archive ./ sbuild-build-depends-seqprep-dummy 0.invalid.0 [880 B] Get:2 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpython3.7-minimal armhf 3.7.6-1ubuntu2 [541 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf libexpat1 armhf 2.2.9-1 [53.2 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main armhf python3.7-minimal armhf 3.7.6-1ubuntu2 [1350 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf python3-minimal armhf 3.7.5-1ubuntu1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libmpdec2 armhf 2.4.2-2 [66.4 kB] Get:8 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpython3.7-stdlib armhf 3.7.6-1ubuntu2 [1688 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf python3.7 armhf 3.7.6-1ubuntu2 [304 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf libpython3-stdlib armhf 3.7.5-1ubuntu1 [6844 B] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf python3 armhf 3.7.5-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libuchardet0 armhf 0.0.6-3 [62.1 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf groff-base armhf 1.22.4-4 [777 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf libpipeline1 armhf 1.5.2-2 [23.5 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf man-db armhf 2.9.0-2 [1079 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libmagic-mgc armhf 1:5.37-6ubuntu1 [209 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf libmagic1 armhf 1:5.37-6ubuntu1 [67.8 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf file armhf 1:5.37-6ubuntu1 [22.2 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:22 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libglib2.0-0 armhf 2.63.3-2 [1119 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf libicu63 armhf 63.2-2 [8002 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libxml2 armhf 2.9.4+dfsg1-8ubuntu3 [554 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10 [46.2 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11ubuntu1 [321 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:30 http://ftpmaster.internal/ubuntu focal-proposed/main armhf automake all 1:1.16.1-4ubuntu4 [522 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10 [412 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-11 [194 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf libdebhelper-perl all 12.7.3ubuntu1 [52.1 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-1 [90.4 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [16.0 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf dh-strip-nondeterminism all 1.6.3-1 [5224 B] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf dwz armhf 0.13-5 [153 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf gettext armhf 0.19.8.1-10 [836 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf debhelper all 12.7.3ubuntu1 [896 kB] Get:45 http://ftpmaster.internal/ubuntu focal/universe armhf markdown all 1.0.1-10 [17.5 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1ubuntu3 [166 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.6 MB in 1s (28.4 MB/s) Selecting previously unselected package libpython3.7-minimal:armhf. (Reading database ... 14548 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.6-1ubuntu2_armhf.deb ... Unpacking libpython3.7-minimal:armhf (3.7.6-1ubuntu2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.9-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.9-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.6-1ubuntu2_armhf.deb ... Unpacking python3.7-minimal (3.7.6-1ubuntu2) ... Setting up libpython3.7-minimal:armhf (3.7.6-1ubuntu2) ... Setting up libexpat1:armhf (2.2.9-1) ... Setting up python3.7-minimal (3.7.6-1ubuntu2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14797 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.5-1ubuntu1_armhf.deb ... Unpacking python3-minimal (3.7.5-1ubuntu1) ... Selecting previously unselected package mime-support. 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Preparing to unpack .../00-python3_3.7.5-1ubuntu1_armhf.deb ... Unpacking python3 (3.7.5-1ubuntu1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../01-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../03-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../04-groff-base_1.22.4-4_armhf.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../05-libpipeline1_1.5.2-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.2-2) ... Selecting previously unselected package man-db. 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Unpacking sbuild-build-depends-seqprep-dummy (0.invalid.0) ... Setting up libpipeline1:armhf (1.5.2-2) ... Setting up mime-support (3.64ubuntu1) ... Setting up libmagic-mgc (1:5.37-6ubuntu1) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:armhf (2.63.3-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.3ubuntu1) ... Setting up libmagic1:armhf (1:5.37-6ubuntu1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6ubuntu1) ... Setting up libicu63:armhf (63.2-2) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libmpdec2:armhf (2.4.2-2) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libxml2:armhf (2.9.4+dfsg1-8ubuntu3) ... Setting up markdown (1.0.1-10) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libpython3.7-stdlib:armhf (3.7.6-1ubuntu2) ... Setting up libtool (2.4.6-11) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libpython3-stdlib:armhf (3.7.5-1ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.6-1ubuntu2) ... Setting up gettext (0.19.8.1-10) ... Setting up python3 (3.7.5-1ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.3ubuntu1) ... Setting up sbuild-build-depends-seqprep-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-171-generic arm64 (armv7l) Toolchain package versions: binutils_2.33.50.20200114-0ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-24ubuntu1 gcc-9_9.2.1-24ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-24ubuntu1 libstdc++6_9.2.1-24ubuntu1 linux-libc-dev_5.4.0-11.14 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.7 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.50.20200114-0ubuntu1 binutils-arm-linux-gnueabihf_2.33.50.20200114-0ubuntu1 binutils-common_2.33.50.20200114-0ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu5 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-24ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu5 file_1:5.37-6ubuntu1 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-24ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-24ubuntu1 gcc-9-base_9.2.1-24ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.3-1build1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.7 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-24ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-24ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.33.50.20200114-0ubuntu1 libblkid1_2.34-0.1ubuntu5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-24ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libctf-nobfd0_2.33.50.20200114-0ubuntu1 libctf0_2.33.50.20200114-0ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.3ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libexpat1_2.2.9-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu5 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-1 libgcc-9-dev_9.2.1-24ubuntu1 libgcc1_1:9.2.1-24ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.63.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_9.2.1-24ubuntu1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libjson-c4_0.13.1+dfsg-6 libkmod2_26-3ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6ubuntu1 libmagic1_1:5.37-6ubuntu1 libmount1_2.34-0.1ubuntu5 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpython3-stdlib_3.7.5-1ubuntu1 libpython3.7-minimal_3.7.6-1ubuntu2 libpython3.7-stdlib_3.7.6-1ubuntu2 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu5 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1d-2ubuntu3 libstdc++-9-dev_9.2.1-24ubuntu1 libstdc++6_9.2.1-24ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu5 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libubsan1_9.2.1-24ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu5 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu5 libxml2_2.9.4+dfsg1-8ubuntu3 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.0-11.14 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 markdown_1.0.1-10 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu5 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 python3_3.7.5-1ubuntu1 python3-minimal_3.7.5-1ubuntu1 python3.7_3.7.6-1ubuntu2 python3.7-minimal_3.7.6-1ubuntu2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-seqprep-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244-3ubuntu5 systemd-sysv_244-3ubuntu5 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu5 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jan 20 10:45:55 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./seqprep_1.3.2-5.dsc dpkg-source: info: extracting seqprep in seqprep-1.3.2 dpkg-source: info: unpacking seqprep_1.3.2.orig.tar.gz dpkg-source: info: unpacking seqprep_1.3.2-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_unused_variable_errors.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying replace-float-with-double.patch dpkg-source: info: applying 2to3.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18591281 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18591281 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18591281 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package seqprep dpkg-buildpackage: info: source version 1.3.2-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f SeqPrep.o utils.o stdaln.o SeqPrep make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f seqprep rm -f README.html make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu90 -c -Wall -O0 -g -std=c99 SeqPrep.c -o SeqPrep.o cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu90 -c -Wall -O0 -g -std=c99 utils.c -o utils.o cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu90 -c -Wall -O0 -g -std=c99 stdaln.c -o stdaln.o SeqPrep.c: In function ‘main’: SeqPrep.c:166:15: warning: implicit declaration of function ‘getopt’ [-Wimplicit-function-declaration] 166 | while( (ich=getopt( argc, argv, "f:r:1:2:3:4:q:A:s:y:B:O:E:x:M:N:L:o:m:b:w:W:p:P:X:Q:t:e:Z:n:S6ghz" )) != -1 ) { | ^~~~~~ cc SeqPrep.o utils.o stdaln.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lz -lm -o SeqPrep make[2]: Leaving directory '/<>' cp SeqPrep seqprep markdown README.md > README.html make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' # This checks that the tests run and produce byte-identical results. cd Test && mkdir -p out info && \ bash -xc 'gzcat(){ zcat "$@" ; } ; . RUNTEST.sh' + . RUNTEST.sh ++ ../SeqPrep -6 -f ./data/multiplex_bad_contam_1.fq.gz -r ./data/multiplex_bad_contam_2.fq.gz -A GATCGGAAGAGCACACGTCT -B AGATCGGAAGAGCGTCGT -1 ./out/pe_bad_contam_merged_1.fastq.gz -2 ./out/pe_bad_contam_merged_2.fastq.gz -s ./out/pe_bad_contam_merged_s.fastq.gz -E ./info/alignments_merged.txt.gz fastq record not beginning with @ fastq record not beginning with @ Pairs Processed: 0 Pairs Merged: 14314 Pairs With Adapters: 4091 Pairs Discarded: 2228 CPU Time Used (Minutes): 0.581619 ++ ../SeqPrep -6 -f ./data/multiplex_bad_contam_1.fq.gz -r ./data/multiplex_bad_contam_2.fq.gz -A GATCGGAAGAGCACACGTCT -B AGATCGGAAGAGCGTCGT -1 ./out/pe_bad_contam_trimmed_1.fastq.gz -2 ./out/pe_bad_contam_trimmed_2.fastq.gz -E ./info/alignments_trimmed.txt.gz fastq record not beginning with @ fastq record not beginning with @ Pairs Processed: 0 Pairs Merged: 0 Pairs With Adapters: 4091 Pairs Discarded: 2228 CPU Time Used (Minutes): 0.553173 ++ prog=gzcat ++ gzcat ./out/pe_bad_contam_trimmed_1.fastq.gz ++ zcat ./out/pe_bad_contam_trimmed_1.fastq.gz ++ python3 seqlens.py ++ gzcat ./out/pe_bad_contam_trimmed_2.fastq.gz ++ zcat ./out/pe_bad_contam_trimmed_2.fastq.gz ++ python3 seqlens.py ++ gzcat ./out/pe_bad_contam_merged_1.fastq.gz ++ zcat ./out/pe_bad_contam_merged_1.fastq.gz ++ python3 seqlens.py ++ gzcat ./out/pe_bad_contam_merged_2.fastq.gz ++ zcat ./out/pe_bad_contam_merged_2.fastq.gz ++ python3 seqlens.py ++ gzcat ./out/pe_bad_contam_merged_s.fastq.gz ++ zcat ./out/pe_bad_contam_merged_s.fastq.gz ++ python3 seqlens.py [ `cat Test/info/pe_*.txt | md5sum | cut -b -10` = 8bc8e0787e ] # remove output dirs right after testing to make sure the files # will not be included in the data package rm -rf Test/info Test/out make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' cp SeqPrep /sbuild-nonexistent/bin cp: cannot create regular file '/sbuild-nonexistent/bin': No such file or directory make[1]: [Makefile:15: install] Error 1 (ignored) make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing seqprep-dbgsym (in debian/.debhelper/seqprep/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing seqprep (in debian/seqprep); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/seqprep/dbgsym-root/DEBIAN/control, package seqprep-dbgsym, directory debian/.debhelper/seqprep/dbgsym-root dpkg-deb: building package 'seqprep-dbgsym' in 'debian/.debhelper/scratch-space/build-seqprep/seqprep-dbgsym_1.3.2-5_armhf.deb'. Renaming seqprep-dbgsym_1.3.2-5_armhf.deb to seqprep-dbgsym_1.3.2-5_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/seqprep/DEBIAN/control, package seqprep, directory debian/seqprep pkgstripfiles: Truncating usr/share/doc/seqprep/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package seqprep ... pkgstripfiles: No PNG files. dpkg-deb: building package 'seqprep' in '../seqprep_1.3.2-5_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../seqprep_1.3.2-5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200120-1725 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ seqprep_1.3.2-5_armhf.changes: ------------------------------ Format: 1.8 Date: Mon, 20 Jan 2020 11:31:59 +0100 Source: seqprep Binary: seqprep Architecture: armhf Version: 1.3.2-5 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: seqprep - stripping adaptors and/or merging paired reads of DNA sequences w Closes: 938467 Changes: seqprep (1.3.2-5) unstable; urgency=medium . * Test-Depends: s/python/python3/ Closes: #938467 * Set upstream metadata fields: Bug-Submit. Checksums-Sha1: 6329c2101de2a3f86064ffb72da38a6d37919e91 18816 seqprep-dbgsym_1.3.2-5_armhf.ddeb 6deedfe488edbdefe0bc961cf1887887e2351c38 5506 seqprep_1.3.2-5_armhf.buildinfo a9984ddaa20c23f976c954e73e57cb531e221394 27068 seqprep_1.3.2-5_armhf.deb Checksums-Sha256: aca2441706da248454dac2837e638039e9bb87af64af9e647ae3ed53bea82d12 18816 seqprep-dbgsym_1.3.2-5_armhf.ddeb 793fb086030fccc288035596051f149e8fbcccfdf788e40f1eafc885d395f59e 5506 seqprep_1.3.2-5_armhf.buildinfo 44c19e02a12656ee8a55063c9f768d736062ee29e85018581fd4a239dff3b13f 27068 seqprep_1.3.2-5_armhf.deb Files: f30292bb51f3cc3a8488559ab2a8d0ae 18816 debug optional seqprep-dbgsym_1.3.2-5_armhf.ddeb b8d82137ec317e41c47395459dd54119 5506 science optional seqprep_1.3.2-5_armhf.buildinfo 30502331c9188859e320f9a4fdbd88d9 27068 science optional seqprep_1.3.2-5_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ seqprep_1.3.2-5_armhf.deb ------------------------- new debian package, version 2.0. size 27068 bytes: control archive=1144 bytes. 1250 bytes, 22 lines control 326 bytes, 5 lines md5sums Package: seqprep Version: 1.3.2-5 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 79 Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: http://seqanswers.com/wiki/SeqPrep Description: stripping adaptors and/or merging paired reads of DNA sequences with overlap SeqPrep is a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. When an adapter sequence is present, that means that the two reads must overlap (in most cases) so they are forcefully merged. When reads do not have adapter sequence they must be treated with care when doing the merging, so a much more specific approach is taken. The default parameters were chosen with specificity in mind, so that they could be ran on libraries where very few reads are expected to overlap. It is always safest though to save the overlapping procedure for libraries where you have some prior knowledge that a significant portion of the reads will have some overlap. drwxr-xr-x root/root 0 2020-01-20 10:31 ./ drwxr-xr-x root/root 0 2020-01-20 10:31 ./usr/ drwxr-xr-x root/root 0 2020-01-20 10:31 ./usr/bin/ -rwxr-xr-x root/root 49600 2020-01-20 10:31 ./usr/bin/seqprep drwxr-xr-x root/root 0 2020-01-20 10:31 ./usr/share/ drwxr-xr-x root/root 0 2020-01-20 10:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-01-20 10:31 ./usr/share/doc/seqprep/ -rw-r--r-- root/root 11784 2020-01-20 10:31 ./usr/share/doc/seqprep/README.html -rw-r--r-- root/root 1187 2020-01-20 10:31 ./usr/share/doc/seqprep/changelog.Debian.gz -rw-r--r-- root/root 1439 2020-01-20 10:31 ./usr/share/doc/seqprep/copyright drwxr-xr-x root/root 0 2020-01-20 10:31 ./usr/share/man/ drwxr-xr-x root/root 0 2020-01-20 10:31 ./usr/share/man/man1/ -rw-r--r-- root/root 4566 2020-01-20 10:31 ./usr/share/man/man1/seqprep.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 65088 Build-Time: 88 Distribution: focal-proposed Host Architecture: armhf Install-Time: 26 Job: seqprep_1.3.2-5.dsc Machine Architecture: arm64 Package: seqprep Package-Time: 119 Source-Version: 1.3.2-5 Space: 65088 Status: successful Version: 1.3.2-5 -------------------------------------------------------------------------------- Finished at 20200120-1725 Build needed 00:01:59, 65088k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18591281 Scanning for processes to kill in build PACKAGEBUILD-18591281