Ubuntu
seqprep package

seqprep 1.3.2-8 source package in Ubuntu

Changelog

seqprep (1.3.2-8) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)
  * lintian-overrides (see lintian bug #1017966)

 -- Andreas Tille <email address hidden>  Tue, 06 Dec 2022 15:59:49 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
seqprep_1.3.2-8.dsc 2.1 KiB 7fcb53042bbbe05972061ed975c0a3440adfcab636efd1944e9b16d9eb51fd80
seqprep_1.3.2.orig.tar.gz 35.5 MiB 2b8a462a0e0a3e51f70be7730dc77b1f2bb69e74845dd0fbd2110a921c32265a
seqprep_1.3.2-8.debian.tar.xz 11.9 KiB fb698cdd1545fa015eb7d966d108e81fdf2a0f9358e5fa83c860fd72029cecd7

Available diffs

No changes file available.

Binary packages built by this source

seqprep: stripping adaptors and/or merging paired reads of DNA sequences with overlap

 SeqPrep is a program to merge paired end Illumina reads that are overlapping
 into a single longer read. It may also just be used for its adapter trimming
 feature without doing any paired end overlap. When an adapter sequence is
 present, that means that the two reads must overlap (in most cases) so they
 are forcefully merged. When reads do not have adapter sequence they must be
 treated with care when doing the merging, so a much more specific approach is
 taken. The default parameters were chosen with specificity in mind, so that
 they could be ran on libraries where very few reads are expected to overlap.
 It is always safest though to save the overlapping procedure for libraries
 where you have some prior knowledge that a significant portion of the reads
 will have some overlap.

seqprep-data: example data set for seqprep - only used for testing

 SeqPrep is a program to merge paired end Illumina reads that are overlapping
 into a single longer read. It may also just be used for its adapter trimming
 feature without doing any paired end overlap. When an adapter sequence is
 present, that means that the two reads must overlap (in most cases) so they
 are forcefully merged. When reads do not have adapter sequence they must be
 treated with care when doing the merging, so a much more specific approach is
 taken. The default parameters were chosen with specificity in mind, so that
 they could be ran on libraries where very few reads are expected to overlap.
 It is always safest though to save the overlapping procedure for libraries
 where you have some prior knowledge that a significant portion of the reads
 will have some overlap.
 .
 This package is not needed for normal operation of seqprep. It simply
 serves some test data as well as a test script.

seqprep-dbgsym: debug symbols for seqprep