https://launchpad.net/ubuntu/+source/sift/4.0.3b-6/+build/19111749 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-086 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 5 Apr 19:42:04 ntpdate[186882]: adjust time server 10.211.37.1 offset -0.000323 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19111749 --image-type chroot /home/buildd/filecache-default/88ad86cb2b525f1abddded96eadf8014548f7845 Creating target for build PACKAGEBUILD-19111749 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19111749 Starting target for build PACKAGEBUILD-19111749 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19111749 'deb http://ftpmaster.internal/ubuntu focal main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-19111749 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19111749 Updating target for build PACKAGEBUILD-19111749 Ign:1 http://archive-team.internal/bootstrap/riscv64 focal InRelease Get:2 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal Release [757 B] Ign:4 http://archive-team.internal/bootstrap/riscv64 focal Release.gpg Get:5 http://ftpmaster.internal/ubuntu focal-proposed InRelease [265 kB] Get:6 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 Packages [602 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 Packages [796 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main Translation-en [501 kB] Get:9 http://ftpmaster.internal/ubuntu focal/restricted riscv64 Packages [1272 B] Get:10 http://ftpmaster.internal/ubuntu focal/restricted Translation-en [6224 B] Get:11 http://ftpmaster.internal/ubuntu focal/universe riscv64 Packages [6417 kB] Get:12 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5128 kB] Get:13 http://ftpmaster.internal/ubuntu focal/multiverse riscv64 Packages [92.5 kB] Get:14 http://ftpmaster.internal/ubuntu focal/multiverse Translation-en [105 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 Packages [34.2 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [32.8 kB] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/restricted Translation-en [860 B] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 Packages [161 kB] Get:19 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [129 kB] Get:20 http://ftpmaster.internal/ubuntu focal-proposed/multiverse riscv64 Packages [1140 B] Fetched 14.5 MB in 24s (598 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: coreutils gcc-8-base libc-bin libc-dev-bin libc6 libc6-dev liblocale-gettext-perl libperl5.30 libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 perl-base 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.9 MB of archives. After this operation, 28.7 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main riscv64 coreutils riscv64 8.30-3ubuntu2 [1158 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 perl-base riscv64 5.30.0-9build1 [1419 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libc6-dev riscv64 2.31-0ubuntu7 [3659 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libc-dev-bin riscv64 2.31-0ubuntu7 [62.5 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libc6 riscv64 2.31-0ubuntu7 [2272 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libc-bin riscv64 2.31-0ubuntu7 [505 kB] Get:7 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libsystemd0 riscv64 245.2-1ubuntu3 [242 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 liblocale-gettext-perl riscv64 1.07-4 [16.5 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libudev1 riscv64 245.2-1ubuntu3 [69.0 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-charwidth-perl riscv64 0.04-10 [9460 B] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-iconv-perl riscv64 1.7-7 [13.2 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 gcc-8-base riscv64 8.4.0-3ubuntu2 [18.4 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 libperl5.30 riscv64 5.30.0-9build1 [3422 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.9 MB in 2s (5241 kB/s) (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_riscv64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu2) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../perl-base_5.30.0-9build1_riscv64.deb ... Unpacking perl-base (5.30.0-9build1) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-9build1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc-dev-bin_2.31-0ubuntu7_riscv64.deb ... Unpacking libc-dev-bin (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc6_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Setting up libc6:riscv64 (2.31-0ubuntu7) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-0ubuntu7_riscv64.deb ... Unpacking libc-bin (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Setting up libc-bin (2.31-0ubuntu7) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libsystemd0_245.2-1ubuntu3_riscv64.deb ... Unpacking libsystemd0:riscv64 (245.2-1ubuntu3) over (244.3-1ubuntu1) ... Setting up libsystemd0:riscv64 (245.2-1ubuntu3) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-4_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-4) over (1.07-4) ... Preparing to unpack .../libudev1_245.2-1ubuntu3_riscv64.deb ... Unpacking libudev1:riscv64 (245.2-1ubuntu3) over (244.3-1ubuntu1) ... Setting up libudev1:riscv64 (245.2-1ubuntu3) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libtext-charwidth-perl_0.04-10_riscv64.deb ... Unpacking libtext-charwidth-perl (0.04-10) over (0.04-10) ... Preparing to unpack .../libtext-iconv-perl_1.7-7_riscv64.deb ... Unpacking libtext-iconv-perl (1.7-7) over (1.7-7) ... Preparing to unpack .../gcc-8-base_8.4.0-3ubuntu2_riscv64.deb ... Unpacking gcc-8-base:riscv64 (8.4.0-3ubuntu2) over (8.4.0-3ubuntu1) ... Preparing to unpack .../libperl5.30_5.30.0-9build1_riscv64.deb ... Unpacking libperl5.30:riscv64 (5.30.0-9build1) over (5.30.0-9build1) ... Setting up libtext-iconv-perl (1.7-7) ... Setting up libtext-charwidth-perl (0.04-10) ... Setting up gcc-8-base:riscv64 (8.4.0-3ubuntu2) ... Setting up libperl5.30:riscv64 (5.30.0-9build1) ... Setting up libc-dev-bin (2.31-0ubuntu7) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libc6-dev:riscv64 (2.31-0ubuntu7) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19111749 riscv64 focal -c chroot:build-PACKAGEBUILD-19111749 --arch=riscv64 --dist=focal --nolog sift_4.0.3b-6.dsc Initiating build PACKAGEBUILD-19111749 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-086 +==============================================================================+ | sift 4.0.3b-6 (riscv64) Sun, 05 Apr 2020 19:44:26 +0000 | +==============================================================================+ Package: sift Version: 4.0.3b-6 Source Version: 4.0.3b-6 Distribution: focal Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19111749/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/sift-itqMjR/resolver-e8rMok' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- sift_4.0.3b-6.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/sift-itqMjR/sift-4.0.3b' with '<>' I: NOTICE: Log filtering will replace 'build/sift-itqMjR' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 10), libblimps3-dev, build-essential, fakeroot Filtered Build-Depends: debhelper (>= 10), libblimps3-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [374 B] Get:5 copy:/<>/apt_archive ./ Packages [461 B] Fetched 1792 B in 0s (6633 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblimps3 libblimps3-dev libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff blimps-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblimps3 libblimps3-dev libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy tzdata 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 17.2 MB of archives. After this operation, 69.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [884 B] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 groff-base riscv64 1.22.4-4build1 [816 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 libglib2.0-0 riscv64 2.64.1-1 [1122 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 tzdata all 2019c-3ubuntu1 [294 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 libxml2 riscv64 2.9.10+dfsg-4build1 [558 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main riscv64 libtool all 2.4.6-13 [161 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main riscv64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:28 http://ftpmaster.internal/ubuntu focal/main riscv64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:30 http://ftpmaster.internal/ubuntu focal/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main riscv64 po-debconf all 1.0.21 [233 kB] Get:35 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 debhelper all 12.10ubuntu1 [877 kB] Get:36 http://ftpmaster.internal/ubuntu focal/multiverse riscv64 libblimps3 riscv64 3.9+ds-1 [56.4 kB] Get:37 http://ftpmaster.internal/ubuntu focal/multiverse riscv64 libblimps3-dev riscv64 3.9+ds-1 [154 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.2 MB in 3s (5343 kB/s) Selecting previously unselected package libbsd0:riscv64. (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4build1_riscv64.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_riscv64.deb ... 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Unpacking libcroco3:riscv64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_12.10ubuntu1_all.deb ... Unpacking debhelper (12.10ubuntu1) ... Selecting previously unselected package libblimps3. Preparing to unpack .../34-libblimps3_3.9+ds-1_riscv64.deb ... Unpacking libblimps3 (3.9+ds-1) ... Selecting previously unselected package libblimps3-dev. Preparing to unpack .../35-libblimps3-dev_3.9+ds-1_riscv64.deb ... Unpacking libblimps3-dev (3.9+ds-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../36-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:riscv64 (1.5.2-2build1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:riscv64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.10ubuntu1) ... Setting up libmagic1:riscv64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Apr 5 19:46:00 UTC 2020. Universal Time is now: Sun Apr 5 19:46:00 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:riscv64 (0.0.6-3build1) ... Setting up libblimps3 (3.9+ds-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libblimps3-dev (3.9+ds-1) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libtool (2.4.6-13) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-4build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.10ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 (riscv64) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-8ubuntu1 gcc-9_9.3.0-8ubuntu1 libc6-dev_2.31-0ubuntu7 libstdc++-9-dev_9.3.0-8ubuntu1 libstdc++6_10-20200324-1ubuntu1 linux-libc-dev_5.4.0-21.25 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 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libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-4 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-8ubuntu1 libstdc++6_10-20200324-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.2-1ubuntu3 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libuchardet0_0.0.6-3build1 libudev1_245.2-1ubuntu3 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-21.25 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu3 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu3 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: sift Binary: sift Architecture: any Version: 4.0.3b-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://sift.bii.a-star.edu.sg/ Standards-Version: 4.1.1 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sift.git Vcs-Git: https://anonscm.debian.org/git/debian-med/sift.git Build-Depends: debhelper (>= 10), libblimps3-dev Package-List: sift deb non-free/science optional arch=any Checksums-Sha1: 95965cc4d4ddaecc5f666331106dc1ba3243d819 80095108 sift_4.0.3b.orig.tar.gz 23ae86e1ca9a739a6cd0126f7bda3ed5f68b51fb 26784 sift_4.0.3b-6.debian.tar.xz Checksums-Sha256: 9077c77efcb82d737b00541b39c01ff568ef741a318510ae88c4d970b4d43d6b 80095108 sift_4.0.3b.orig.tar.gz 0ce8c59222b3ce07361a2913e2e5c90b6cb6b9d67d5f16d0251aefcd2ac97788 26784 sift_4.0.3b-6.debian.tar.xz Files: fba108a66c5a8db226479fa0cac163f7 80095108 sift_4.0.3b.orig.tar.gz f5f159badf9e256c47cecda8bb80d83e 26784 sift_4.0.3b-6.debian.tar.xz Autobuild: yes -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlomaXoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH3wQ//Ssdm6XUXeN77u9c9CIWCuIc18uDucCgG peLLXjXsjxsguArGs+TwJWWHcxIpmgVFgHFKiMnoQFttRbu+Tf2RVtHtltmFbRvP 9KQwkN8tBLQOxMWdDYdb297/79ydsDry/g25to8rYmtr+FWSqxMBl8tys/5VfZ+s oRQ10ApTOu4By6LY+BFwuogenK+Z7ISGiM4gvLp91VSQJ2CAlKYoWP9X9begfRzU /y5iOJG7NCxZ4lq9y5ZDNrjd58Zvapsfbt0A2QoV/vpmp0oN9f4vsupwR4CJ/3HF 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ld-as-needed dpkg-source: info: applying fix_gcc_warnings dpkg-source: info: applying jarfile Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19111749 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19111749 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19111749 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package sift dpkg-buildpackage: info: source version 4.0.3b-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' if [ -e src/Makefile -a -e src/deps.mk ]; then make -j4 -C src prefix=/usr distclean; fi rm -f info_on_seqs.1 SIFT_for_submitting_fasta_seq.csh.1 # remove pre-compiled binaries from bin - thanks to Michael Bienia rm -f bin/choose_seqs_via_psiblastseedmedian rm -f bin/clump_output_alignedseq rm -f bin/consensus_to_seq rm -f bin/fastaseqs rm -f bin/info_on_seqs rm -f bin/process_alignment rm -f bin/psiblast_res_to_fasta_dbpairwise rm -f bin/seqs_from_psiblast_res make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' pod2man -c 'User Commands' --release="4.0.3b" info_on_seqs.pod > info_on_seqs.1 pod2man -c 'User Commands' --release="4.0.3b" SIFT_for_submitting_fasta_seq.csh.pod > SIFT_for_submitting_fasta_seq.csh.1 make -j4 -C src prefix=/usr VERSION=4.0.3b deps.mk && \ make -j4 -C src prefix=/usr VERSION=4.0.3b make[2]: Entering directory '/<>/src' gcc -MM -g -O2 -fdebug-prefix-map=/<>/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" choose_seqs_via_psiblastseedmedian.c clump_output_alignedseq.c consensus_to_seq.c info_on_seqs.c psiblast_res_to_fasta_dbpairwise.c seqs_from_psiblast_res.c > deps.mk make[2]: 'deps.mk' is up to date. make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' gcc -g -O2 -fdebug-prefix-map=/<>/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o choose_seqs_via_psiblastseedmedian.o choose_seqs_via_psiblastseedmedian.c gcc -g -O2 -fdebug-prefix-map=/<>/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clump_output_alignedseq.o clump_output_alignedseq.c gcc -g -O2 -fdebug-prefix-map=/<>/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o consensus_to_seq.o consensus_to_seq.c gcc -g -O2 -fdebug-prefix-map=/<>/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o info_on_seqs.o info_on_seqs.c In file included from choose_seqs_via_psiblastseedmedian.c:20: Matrix_Info.c: In function ‘allow_min_and_above’: Matrix_Info.c:916:12: warning: implicit declaration of function ‘min_aa_in_column’ [-Wimplicit-function-declaration] 916 | min_aa = min_aa_in_column (matrix, pos); | ^~~~~~~~~~~~~~~~ In file included from clump_output_alignedseq.c:23: Matrix_Info.c: In function ‘allow_min_and_above’: Matrix_Info.c:916:12: warning: implicit declaration of function ‘min_aa_in_column’ [-Wimplicit-function-declaration] 916 | min_aa = min_aa_in_column (matrix, pos); | ^~~~~~~~~~~~~~~~ In file included from info_on_seqs.c:10: Matrix_Info.c: In function ‘allow_min_and_above’: Matrix_Info.c:916:12: warning: implicit declaration of function ‘min_aa_in_column’ [-Wimplicit-function-declaration] 916 | min_aa = min_aa_in_column (matrix, pos); | ^~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o psiblast_res_to_fasta_dbpairwise.o psiblast_res_to_fasta_dbpairwise.c In file included from psiblast_res_to_fasta_dbpairwise.c:29: blocklist.c: In function ‘insert_blist’: blocklist.c:85:26: warning: ‘; distance from previous blo...’ directive writing 37 bytes into a region of size between 1 and 100 [-Wformat-overflow=] 85 | sprintf(block->ac, "%s; distance from previous blocks=(0,0)", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/blimps/blocksprogs.h:3, from psiblast_res_to_fasta_dbpairwise.c:28: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 38 and 137 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/<>/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqs_from_psiblast_res.o seqs_from_psiblast_res.c In file included from seqs_from_psiblast_res.c:19: blocklist.c: In function ‘insert_blist’: blocklist.c:85:26: warning: ‘; distance from previous blo...’ directive writing 37 bytes into a region of size between 1 and 100 [-Wformat-overflow=] 85 | sprintf(block->ac, "%s; distance from previous blocks=(0,0)", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/blimps/blocksprogs.h:3, from seqs_from_psiblast_res.c:18: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 38 and 137 bytes into a destination of size 100 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib clump_output_alignedseq.o -lblimps -lm -o clump_output_alignedseq gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib consensus_to_seq.o -lblimps -lm -o consensus_to_seq gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib psiblast_res_to_fasta_dbpairwise.o -lblimps -lm -o psiblast_res_to_fasta_dbpairwise In file included from /usr/include/string.h:495, from /usr/include/blimps/blocksprogs.h:4, from info_on_seqs.c:7: In function ‘strncpy’, inlined from ‘main’ at info_on_seqs.c:116:3: /usr/include/riscv64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ info_on_seqs.c: In function ‘main’: info_on_seqs.c:112:17: note: length computed here 112 | desc_length = strlen(strptr); | ^~~~~~~~~~~~~~ gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib info_on_seqs.o -lblimps -lm -o info_on_seqs gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib choose_seqs_via_psiblastseedmedian.o -lblimps -lm -o choose_seqs_via_psiblastseedmedian gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib seqs_from_psiblast_res.o -lblimps -lm -o seqs_from_psiblast_res make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' make -C src DESTDIR=/<>/debian/sift prefix=/usr install make[2]: Entering directory '/<>/src' mkdir -p /<>/debian/sift/usr/lib/sift/bin && \ cp -a \ choose_seqs_via_psiblastseedmedian \ clump_output_alignedseq \ consensus_to_seq \ info_on_seqs \ psiblast_res_to_fasta_dbpairwise \ seqs_from_psiblast_res \ /<>/debian/sift/usr/lib/sift/bin/ make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' # lkajan: fastaseqs comes from the blimps package, this source does not have rules for creating it dh_install -X.svn -X.swp -XIntersectFeatures.jar -XManuals -Xfastaseqs -Xlinux -Xsolaris bin /usr/lib/sift/ dh_install bin/IntersectFeatures.jar /usr/share/sift/ dh_install -X.svn -X.swp blimps/docs /usr/share/sift/blimps/ #Links are created by debian/links for f in SIFT_for_submitting_fasta_seq.csh SIFT_for_submitting_NCBI_gi_id.csh; do \ sed --in-place -e 's|\b__MAKE_PREFIX__\b|/usr|g;s|__SIFT_SCRIPTDIR__|/usr/lib/sift/bin|g;s|__SIFT_BINDIR__|/usr/lib/sift/bin|g;' /<>/debian/sift/usr/lib/sift/bin/$f; \ done; for f in seqs_chosen_via_median_info.csh SIFT_for_submitting_fasta_seq.csh SIFT_for_submitting_NCBI_gi_id.csh; do \ sed --in-place -e 's|\b__MAKE_PREFIX__\b|/usr|g;s|__SIFT_SCRIPTDIR__|/usr/lib/sift/bin|g;s|__SIFT_BINDIR__|/usr/lib/sift/bin|g;' /<>/debian/sift/usr/lib/sift/bin/$f; \ done; chmod +x /<>/debian/sift/usr/lib/sift/bin/perlscripts/separate_query_from_rest_of_seqs.pl # look out: DNA_PROT_SUBROUTINES.pl is really a module (should be pm)! for f in SIFT_subroutines.pm DNA_PROT_SUBROUTINES.pl; do \ chmod -x /<>/debian/sift/usr/lib/sift/bin/$f; \ done; for f in IntersectFeatures.jar; do \ chmod -x /<>/debian/sift/usr/share/sift/$f; \ done; make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package sift: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package sift: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing sift (in debian/sift); do_strip: , oemstrip: pkgstriptranslations: processing sift-dbgsym (in debian/.debhelper/sift/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/sift/DEBIAN/control, package sift, directory debian/sift pkgstripfiles: Running PNG optimization (using 4 cpus) for package sift ... pkgstripfiles: No PNG files. pkgstripfiles: processing control file: debian/.debhelper/sift/dbgsym-root/DEBIAN/control, package sift-dbgsym, directory debian/.debhelper/sift/dbgsym-root dpkg-deb: building package 'sift' in '../sift_4.0.3b-6_riscv64.deb'. dpkg-deb: building package 'sift-dbgsym' in 'debian/.debhelper/scratch-space/build-sift/sift-dbgsym_4.0.3b-6_riscv64.deb'. Renaming sift-dbgsym_4.0.3b-6_riscv64.deb to sift-dbgsym_4.0.3b-6_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../sift_4.0.3b-6_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-05T19:50:17Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ sift_4.0.3b-6_riscv64.changes: ------------------------------ Format: 1.8 Date: Tue, 05 Dec 2017 09:46:16 +0100 Source: sift Binary: sift Architecture: riscv64 Version: 4.0.3b-6 Distribution: focal Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: sift - predicts if a substitution in a protein has a phenotypic effect Changes: sift (4.0.3b-6) unstable; urgency=medium . * Binary Upload since non-free packages are not autobuild Checksums-Sha1: c9eefe7d76761ee68228e9e8cf4b623acec3d523 571576 sift-dbgsym_4.0.3b-6_riscv64.ddeb 3bce762d4f75628647e9b267a8291dcf76147d8b 5019 sift_4.0.3b-6_riscv64.buildinfo d9d1b7ee3e047db8242656bd6f1b679fddc48242 246088 sift_4.0.3b-6_riscv64.deb Checksums-Sha256: 5e42498f6482cac7b7b99ee4baee49d086963874d58080483645431472b3dbed 571576 sift-dbgsym_4.0.3b-6_riscv64.ddeb 909466fd6bcd68e8ddbfd99d738afd88605021aea01eaf840ce196e25037b78a 5019 sift_4.0.3b-6_riscv64.buildinfo 9e4b2d9ff4fd153b4ec9a6ac88cfe753730149b4887dd67e39488b8b5e3ac733 246088 sift_4.0.3b-6_riscv64.deb Files: d28e5392d8e3d9842120f5bcf05d5f70 571576 non-free/debug optional sift-dbgsym_4.0.3b-6_riscv64.ddeb 63ef93a32511977488f2bca2ff8e188f 5019 non-free/science optional sift_4.0.3b-6_riscv64.buildinfo 63e8273ccdd8d4d612ff84c9412b3be5 246088 non-free/science optional sift_4.0.3b-6_riscv64.deb /<>/sift_4.0.3b-6_riscv64.changes.new could not be renamed to /<>/sift_4.0.3b-6_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: sift Binary: sift Architecture: riscv64 Version: 4.0.3b-6 Checksums-Md5: d28e5392d8e3d9842120f5bcf05d5f70 571576 sift-dbgsym_4.0.3b-6_riscv64.ddeb 63e8273ccdd8d4d612ff84c9412b3be5 246088 sift_4.0.3b-6_riscv64.deb Checksums-Sha1: c9eefe7d76761ee68228e9e8cf4b623acec3d523 571576 sift-dbgsym_4.0.3b-6_riscv64.ddeb d9d1b7ee3e047db8242656bd6f1b679fddc48242 246088 sift_4.0.3b-6_riscv64.deb Checksums-Sha256: 5e42498f6482cac7b7b99ee4baee49d086963874d58080483645431472b3dbed 571576 sift-dbgsym_4.0.3b-6_riscv64.ddeb 9e4b2d9ff4fd153b4ec9a6ac88cfe753730149b4887dd67e39488b8b5e3ac733 246088 sift_4.0.3b-6_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sun, 05 Apr 2020 19:50:10 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu4), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-5ubuntu1), binutils-common (= 2.34-5ubuntu1), binutils-riscv64-linux-gnu (= 2.34-5ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu8), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-8ubuntu1), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.10ubuntu1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-8ubuntu1), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10-20200324-1ubuntu1), gcc-9 (= 9.3.0-8ubuntu1), gcc-9-base (= 9.3.0-8ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-4build1), gzip (= 1.10-0ubuntu4), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.67-2), libatomic1 (= 10-20200324-1ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-5ubuntu1), libblimps3 (= 3.9+ds-1), libblimps3-dev (= 3.9+ds-1), libblkid1 (= 2.34-0.1ubuntu8), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu7), libc-dev-bin (= 2.31-0ubuntu7), libc6 (= 2.31-0ubuntu7), libc6-dev (= 2.31-0ubuntu7), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10-20200324-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10ubuntu4), libcrypt1 (= 1:4.4.10-10ubuntu4), libctf-nobfd0 (= 2.34-5ubuntu1), libctf0 (= 2.34-5ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 12.10ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-9-dev (= 9.3.0-8ubuntu1), libgcc-s1 (= 10-20200324-1ubuntu1), libgcc1 (= 1:10-20200324-1ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.1-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200324-1ubuntu1), libgpg-error0 (= 1.37-1), libicu66 (= 66.1-2ubuntu2), libisl22 (= 0.22.1-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1ubuntu8), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libperl5.30 (= 5.30.0-9build1), libpipeline1 (= 1.5.2-2build1), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1ubuntu8), libstdc++-9-dev (= 9.3.0-8ubuntu1), libstdc++6 (= 10-20200324-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.2-1ubuntu3), libtinfo6 (= 6.2-0ubuntu2), libtool (= 2.4.6-13), libuchardet0 (= 0.0.6-3build1), libudev1 (= 245.2-1ubuntu3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu8), libxml2 (= 2.9.10+dfsg-4build1), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-21.25), login (= 1:4.8.1-1ubuntu3), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-0ubuntu2), ncurses-bin (= 6.2-0ubuntu2), patch (= 2.7.6-6), perl (= 5.30.0-9build1), perl-base (= 5.30.0-9build1), perl-modules-5.30 (= 5.30.0-9build1), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2019c-3ubuntu1), util-linux (= 2.34-0.1ubuntu8), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1512463576" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ sift_4.0.3b-6_riscv64.deb ------------------------- new Debian package, version 2.0. size 246088 bytes: control archive=2720 bytes. 917 bytes, 17 lines control 4829 bytes, 64 lines md5sums Package: sift Version: 4.0.3b-6 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 886 Depends: libblimps3 (>= 3.9+ds), libc6 (>= 2.27), blimps-utils, csh Section: non-free/science Priority: optional Homepage: http://sift.bii.a-star.edu.sg/ Description: predicts if a substitution in a protein has a phenotypic effect SIFT is a sequence homology-based tool that sorts intolerant from tolerant amino acid substitutions and predicts whether an amino acid substitution in a protein will have a phenotypic effect. SIFT is based on the premise that protein evolution is correlated with protein function. Positions important for function should be conserved in an alignment of the protein family, whereas unimportant positions should appear diverse in an alignment. drwxr-xr-x root/root 0 2017-12-05 08:46 ./ drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/ drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/bin/ lrwxrwxrwx root/root 0 2017-12-05 08:46 ./usr/bin/SIFT_exome_nssnvs.pl -> ../lib/sift/bin/SIFT_exome_nssnvs.pl lrwxrwxrwx root/root 0 2017-12-05 08:46 ./usr/bin/SIFT_for_submitting_fasta_seq.csh -> ../lib/sift/bin/SIFT_for_submitting_fasta_seq.csh lrwxrwxrwx root/root 0 2017-12-05 08:46 ./usr/bin/info_on_seqs -> ../lib/sift/bin/info_on_seqs lrwxrwxrwx root/root 0 2017-12-05 08:46 ./usr/bin/map_coords_to_bin.pl -> ../lib/sift/bin/map_coords_to_bin.pl lrwxrwxrwx root/root 0 2017-12-05 08:46 ./usr/bin/sift_feed_to_chr_coords_batch.pl -> ../lib/sift/bin/sift_feed_to_chr_coords_batch.pl lrwxrwxrwx root/root 0 2017-12-05 08:46 ./usr/bin/sift_for_submitting_fasta_seq.csh -> ../lib/sift/bin/SIFT_for_submitting_fasta_seq.csh lrwxrwxrwx root/root 0 2017-12-05 08:46 ./usr/bin/snv_db_engine.pl -> ../lib/sift/bin/snv_db_engine.pl drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/lib/sift/ drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/lib/sift/bin/ -rwxr-xr-x root/root 45320 2017-12-05 08:46 ./usr/lib/sift/bin/Classify_SNPs_Indels.pl -rw-r--r-- root/root 20063 2010-03-08 17:46 ./usr/lib/sift/bin/DNA_PROT_SUBROUTINES.pl -rwxr-xr-x root/root 93 2017-12-05 08:46 ./usr/lib/sift/bin/IntersectLocations.sh -rwxr-xr-x root/root 28723 2017-12-05 08:46 ./usr/lib/sift/bin/SIFT_exome_indels.pl -rwxr-xr-x root/root 11619 2017-12-05 08:46 ./usr/lib/sift/bin/SIFT_exome_nssnvs.pl -rwxr-xr-x root/root 2454 2017-12-05 08:46 ./usr/lib/sift/bin/SIFT_for_submitting_NCBI_gi_id.csh -rwxr-xr-x root/root 1503 2017-12-05 08:46 ./usr/lib/sift/bin/SIFT_for_submitting_fasta_seq.csh -rwxr-xr-x root/root 5845 2017-12-05 08:46 ./usr/lib/sift/bin/SIFT_intersect_cds.pl -rw-r--r-- root/root 5928 2010-03-08 18:11 ./usr/lib/sift/bin/SIFT_subroutines.pm drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/lib/sift/bin/SNPClassifier/ -rwxr-xr-x root/root 32175 2017-12-05 08:46 ./usr/lib/sift/bin/SNPClassifier/Classify_SNPs.pl -rwxr-xr-x root/root 12771 2017-12-05 08:46 ./usr/lib/sift/bin/SNPClassifier/Extract_Coding_Info.pl -rwxr-xr-x root/root 96728 2017-12-05 08:46 ./usr/lib/sift/bin/choose_seqs_via_psiblastseedmedian -rwxr-xr-x root/root 84376 2017-12-05 08:46 ./usr/lib/sift/bin/clump_output_alignedseq -rwxr-xr-x root/root 10312 2017-12-05 08:46 ./usr/lib/sift/bin/consensus_to_seq -rwxr-xr-x root/root 6160 2017-12-05 08:46 ./usr/lib/sift/bin/detect_indel.pl -rwxr-xr-x root/root 10491 2017-12-05 08:46 ./usr/lib/sift/bin/detect_repeat.pl -rwxr-xr-x root/root 1943 2017-12-05 08:46 ./usr/lib/sift/bin/get_sequences.pl -rwxr-xr-x root/root 949 2017-12-05 08:46 ./usr/lib/sift/bin/indelfile_to_gff.pl -rwxr-xr-x root/root 92608 2017-12-05 08:46 ./usr/lib/sift/bin/info_on_seqs -rwxr-xr-x root/root 2340 2017-12-05 08:46 ./usr/lib/sift/bin/map_coords_to_bin.pl -rwxr-xr-x root/root 3182 2017-12-05 08:46 ./usr/lib/sift/bin/map_coords_to_bin_indels.pl -rwxr-xr-x root/root 5019 2017-12-05 08:46 ./usr/lib/sift/bin/model_transcript.pl drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/lib/sift/bin/perlscripts/ -rwxr-xr-x root/root 4068 2017-12-05 08:46 ./usr/lib/sift/bin/perlscripts/get_BLINK_seq.pl -rwxr-xr-x root/root 2281 2010-03-08 17:59 ./usr/lib/sift/bin/perlscripts/separate_query_from_rest_of_seqs.pl -rwxr-xr-x root/root 67952 2017-12-05 08:46 ./usr/lib/sift/bin/psiblast_res_to_fasta_dbpairwise -rwxr-xr-x root/root 1570 2017-12-05 08:46 ./usr/lib/sift/bin/reformat_chrfile.pl -rwxr-xr-x root/root 4321 2017-12-05 08:46 ./usr/lib/sift/bin/seqs_chosen_via_median_info.csh -rwxr-xr-x root/root 67952 2017-12-05 08:46 ./usr/lib/sift/bin/seqs_from_psiblast_res -rwxr-xr-x root/root 7948 2011-08-15 13:44 ./usr/lib/sift/bin/seqs_to_matrixweb -rwxr-xr-x root/root 907 2017-12-05 08:46 ./usr/lib/sift/bin/sift_feed_to_chr_coords_batch.pl -rwxr-xr-x root/root 37486 2017-12-05 08:46 ./usr/lib/sift/bin/snv_db_engine.pl drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/share/ drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/share/doc/sift/ -rw-r--r-- root/root 168 2017-12-05 08:46 ./usr/share/doc/sift/README.Debian -rw-r--r-- root/root 7882 2010-03-08 23:33 ./usr/share/doc/sift/README.gz -rw-r--r-- root/root 5191 2010-01-21 23:35 ./usr/share/doc/sift/README_4.0.3.gz -rw-r--r-- root/root 1458 2010-03-08 23:35 ./usr/share/doc/sift/VERSION_UPDATE -rw-r--r-- root/root 749 2017-12-05 08:46 ./usr/share/doc/sift/changelog.Debian.gz -rw-r--r-- root/root 6778 2017-12-05 08:46 ./usr/share/doc/sift/copyright drwxr-xr-x root/root 0 2017-12-05 08:46 ./usr/share/doc/sift/examples/ -rw-r--r-- root/root 48 2009-11-23 18:13 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./usr/share/sift/blimps/docs/default.embed.mat -rw-r--r-- root/root 1752 2009-11-23 18:13 ./usr/share/sift/blimps/docs/default.embed.qij -rw-r--r-- root/root 1390 2009-11-23 18:13 ./usr/share/sift/blimps/docs/default.iij -rw-r--r-- root/root 2765 2009-11-23 18:13 ./usr/share/sift/blimps/docs/default.mat -rw-r--r-- root/root 1752 2009-11-23 18:13 ./usr/share/sift/blimps/docs/default.qij -rw-r--r-- root/root 1443 2009-11-23 18:13 ./usr/share/sift/blimps/docs/default.rank -rw-r--r-- root/root 2264 2009-11-23 18:13 ./usr/share/sift/blimps/docs/default.sij -rw-r--r-- root/root 1251 2009-11-23 18:13 ./usr/share/sift/blimps/docs/identity.frq -rw-r--r-- root/root 16075 2009-11-23 18:13 ./usr/share/sift/blimps/docs/skiplist.doc -rw-r--r-- root/root 10443 2009-11-23 18:13 ./usr/share/sift/blimps/docs/sl-functions.doc +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 187960 Build-Time: 210 Distribution: focal Host Architecture: riscv64 Install-Time: 87 Job: sift_4.0.3b-6.dsc Machine Architecture: riscv64 Package: sift Package-Time: 351 Source-Version: 4.0.3b-6 Space: 187960 Status: successful Version: 4.0.3b-6 -------------------------------------------------------------------------------- Finished at 2020-04-05T19:50:17Z Build needed 00:05:51, 187960k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19111749 Scanning for processes to kill in build PACKAGEBUILD-19111749 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19111749 Stopping target for build PACKAGEBUILD-19111749 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19111749 Removing build PACKAGEBUILD-19111749