Ubuntu
sigma-align package

sigma-align 1.1.3-1 source package in Ubuntu

Changelog

sigma-align (1.1.3-1) unstable; urgency=low

  * New upstream release.
  * Converted the packaging to CDBS.
    - debian/rules is much shorter.
    - CDBS will take care of updating config.guess and config.sub.
    - Created debian/docs and debian/manpages.
  * debian/control:
    - Updated my email address.
    - Incremented Standards-Version to reflect conformance with Policy 3.8.1 (no
      changes needed).
    - Depend on debhelper 7, cdbs and autotools-dev
    - Moved bibliographic information to debian/reference.
    - Use nice Unicode English quotes in the long descriptions.
  * debian/copyright:
    - Updated to latest version of the machine-readable format.
    - Incremented years and updated my email address.
  * Using debhelper 7 (debian/compat).

 -- Ubuntu Archive Auto-Sync <email address hidden>   Wed,  29 Apr 2009 12:11:45 +0100

Upload details

Uploaded by:
Ubuntu Archive Auto-Sync
Uploaded to:
Karmic
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Low Urgency

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Downloads

File Size SHA-256 Checksum
sigma-align_1.1.3.orig.tar.gz 126.2 KiB e11deb2c184d96c263ed9129a063829d9872c47e6caa1675675faf1a02c44c91
sigma-align_1.1.3-1.diff.gz 2.6 KiB d368c01ff2477672bdc7847f3babfa6a8bd50c940409f24253369728c96684e7
sigma-align_1.1.3-1.dsc 1.3 KiB 6bf8b276162cc45ed7919114b676d876cd2a90c008ca962883055262c460fd3f

Available diffs

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Binary packages built by this source

sigma-align: Simple greedy multiple alignment of non-coding DNA sequences

 Sigma (“Simple greedy multiple alignment”) is an alignment program. It's
 algorithm and scoring scheme are designed specifically for non-coding
 DNA sequence.
 .
 It uses a strategy of seeking the best possible gapless local
 alignments. This happens at each step making the best possible alignment
 consistent with existing alignments. It scores the significance of the
 alignment based on the lengths of the aligned fragments and a background
 model. These may be supplied or estimated from an auxiliary file of
 intergenic DNA.