smalt 0.7.6-8 source package in Ubuntu

Changelog

smalt (0.7.6-8) unstable; urgency=medium

  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Do not autoreconf since config is broken

 -- Andreas Tille <email address hidden>  Wed, 24 Oct 2018 21:08:08 +0200

Upload details

Uploaded by:
Debian Med on 2018-10-24
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Eoan release on 2019-04-18 universe misc
Disco release on 2018-11-11 universe misc

Downloads

File Size SHA-256 Checksum
smalt_0.7.6-8.dsc 2.0 KiB fc61fc8eff4375cc6c6a46e21a0cd53897a451467e1299173d1508a977bfaa16
smalt_0.7.6.orig.tar.gz 68.9 MiB 89ccdfe471edba3577b43de9ebfdaedb5cd6e26b02bf4000c554253433796b31
smalt_0.7.6-8.debian.tar.xz 4.9 KiB 70b53b8d068b2f040c886fb636f3dc02e5a3831042fb0c1eda7a1950614106f5

Available diffs

No changes file available.

Binary packages built by this source

smalt: Sequence Mapping and Alignment Tool

 SMALT efficiently aligns DNA sequencing reads with a reference genome.
 Reads from a wide range of sequencing platforms, for example Illumina,
 Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
 paired reads.
 .
 The software employs a perfect hash index of short words (< 20
 nucleotides long), sampled at equidistant steps along the genomic
 reference sequences.
 .
 For each read, potentially matching segments in the reference are
 identified from seed matches in the index and subsequently aligned with
 the read using a banded Smith-Waterman algorithm.
 .
 The best gapped alignments of each read is reported including a score
 for the reliability of the best mapping. The user can adjust the
 trade-off between sensitivity and speed by tuning the length and spacing
 of the hashed words.
 .
 A mode for the detection of split (chimeric) reads is provided.
 Multi-threaded program execution is supported.

smalt-dbgsym: debug symbols for smalt
smalt-examples: Sequence Mapping and Alignment Tool (examples)

 SMALT efficiently aligns DNA sequencing reads with a reference genome.
 Reads from a wide range of sequencing platforms, for example Illumina,
 Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
 paired reads.
 .
 The software employs a perfect hash index of short words (< 20
 nucleotides long), sampled at equidistant steps along the genomic
 reference sequences.
 .
 For each read, potentially matching segments in the reference are
 identified from seed matches in the index and subsequently aligned with
 the read using a banded Smith-Waterman algorithm.
 .
 The best gapped alignments of each read is reported including a score
 for the reliability of the best mapping. The user can adjust the
 trade-off between sensitivity and speed by tuning the length and spacing
 of the hashed words.
 .
 A mode for the detection of split (chimeric) reads is provided.
 Multi-threaded program execution is supported.
 .
 This package contains example data and a test suite to test the data.