https://launchpad.net/ubuntu/+source/snakemake/5.4.0-1/+build/16232599 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-039 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 4 Jan 23:17:14 ntpdate[1818]: adjust time server 10.211.37.1 offset 0.000625 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16232599 /home/buildd/filecache-default/020b0022f770b890c357907d03d82568c584d50e Creating target for build PACKAGEBUILD-16232599 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16232599 Starting target for build PACKAGEBUILD-16232599 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16232599 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16232599 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16232599 Updating target for build PACKAGEBUILD-16232599 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1007 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [9030 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5179 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [110 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [48.2 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [425 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [218 kB] Fetched 17.0 MB in 5s (3282 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-common binutils-x86-64-linux-gnu cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 liblsan0 libmpx2 libpng16-16 libquadmath0 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sed tzdata 45 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After this operation, 160 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg amd64 1.19.2ubuntu2 [1101 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 dash amd64 0.5.10.2-4 [85.8 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.7-1 [190 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgnutls30 amd64 3.6.5-2ubuntu1 [759 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libubsan1 amd64 8.2.0-13ubuntu1 [121 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libtsan0 amd64 8.2.0-13ubuntu1 [288 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8-base amd64 8.2.0-13ubuntu1 [18.6 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc1 amd64 1:8.2.0-13ubuntu1 [40.8 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgomp1 amd64 8.2.0-13ubuntu1 [76.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libitm1 amd64 8.2.0-13ubuntu1 [28.1 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libatomic1 amd64 8.2.0-13ubuntu1 [9056 B] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libasan5 amd64 8.2.0-13ubuntu1 [364 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblsan0 amd64 8.2.0-13ubuntu1 [132 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libmpx2 amd64 8.2.0-13ubuntu1 [11.7 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libquadmath0 amd64 8.2.0-13ubuntu1 [134 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 cpp-8 amd64 8.2.0-13ubuntu1 [7221 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcc1-0 amd64 8.2.0-13ubuntu1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 g++-8 amd64 8.2.0-13ubuntu1 [8113 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8 amd64 8.2.0-13ubuntu1 [8004 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc-8-dev amd64 8.2.0-13ubuntu1 [2304 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++-8-dev amd64 8.2.0-13ubuntu1 [1538 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++6 amd64 8.2.0-13ubuntu1 [398 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libbinutils amd64 2.31.1-11ubuntu1 [484 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils-common amd64 2.31.1-11ubuntu1 [194 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils amd64 2.31.1-11ubuntu1 [3396 B] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-11ubuntu1 [1829 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 libzstd1 amd64 1.3.8+dfsg-2 [226 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libapt-pkg5.0 amd64 1.8.0~alpha3 [816 kB] Get:30 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 apt amd64 1.8.0~alpha3 [1165 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 libext2fs2 amd64 1.44.5-1 [159 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 e2fsprogs amd64 1.44.5-1 [514 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 init amd64 1.56+nmu1 [6080 B] Get:34 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgpg-error0 amd64 1.33-3 [57.4 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 libcom-err2 amd64 1.44.5-1 [9372 B] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libss2 amd64 1.44.5-1 [11.1 kB] Get:37 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-1 [530 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018i-1 [189 kB] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpng16-16 amd64 1.6.36-2 [179 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 e2fslibs amd64 1.44.5-1 [2704 B] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libassuan0 amd64 2.5.2-1 [35.1 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libcomerr2 amd64 1.44.5-1 [2700 B] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-9.10 [1041 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.2 MB in 1s (29.3 MB/s) (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_amd64.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4_amd64.deb ... Unpacking dash (0.5.10.2-4) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_amd64.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:amd64 (3.6.5-2ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libubsan1_8.2.0-13ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../libtsan0_8.2.0-13ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../gcc-8-base_8.2.0-13ubuntu1_amd64.deb ... Unpacking gcc-8-base:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Setting up gcc-8-base:amd64 (8.2.0-13ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-13ubuntu1_amd64.deb ... Unpacking libgcc1:amd64 (1:8.2.0-13ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:amd64 (1:8.2.0-13ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Fri Jan 4 23:17:57 UTC 2019. Universal Time is now: Fri Jan 4 23:17:57 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up libtsan0:amd64 (8.2.0-13ubuntu1) ... Setting up linux-libc-dev:amd64 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up liblsan0:amd64 (8.2.0-13ubuntu1) ... Setting up binutils-common:amd64 (2.31.1-11ubuntu1) ... Setting up libmpx2:amd64 (8.2.0-13ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:amd64 (1.44.5-1) ... Setting up libasan5:amd64 (8.2.0-13ubuntu1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libitm1:amd64 (8.2.0-13ubuntu1) ... Setting up libubsan1:amd64 (8.2.0-13ubuntu1) ... Setting up libbinutils:amd64 (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16232599 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-16232599 --arch=amd64 --dist=disco-proposed --nolog -A snakemake_5.4.0-1.dsc Initiating build PACKAGEBUILD-16232599 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-039.buildd +==============================================================================+ | snakemake 5.4.0-1 (amd64) 04 Jan 2019 23:18 | +==============================================================================+ Package: snakemake Version: 5.4.0-1 Source Version: 5.4.0-1 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/snakemake-DEXvA2/snakemake-5.4.0' with '<>' I: NOTICE: Log filtering will replace 'build/snakemake-DEXvA2' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16232599/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- snakemake_5.4.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-D_iMnT/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-D_iMnT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-D_iMnT/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-D_iMnT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-D_iMnT/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-D_iMnT/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (50.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-D_iMnT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-python, ca-certificates, python3, python3-boto, python3-configargparse, python3-datrie, python3-git, python3-jsonschema, python3-networkx, python3-nose, python3-pandas, python3-psutil, python3-pygraphviz, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark, python3-rpy2, python3-setuptools, python3-sphinx, python3-sphinx-bootstrap-theme, python3-sphinx-rtd-theme, python3-wrapt, python3-yaml, r-cran-rmarkdown Filtered Build-Depends: debhelper (>= 11~), dh-python, ca-certificates, python3, python3-boto, python3-configargparse, python3-datrie, python3-git, python3-jsonschema, python3-networkx, python3-nose, python3-pandas, python3-psutil, python3-pygraphviz, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark, python3-rpy2, python3-setuptools, python3-sphinx, python3-sphinx-bootstrap-theme, python3-sphinx-rtd-theme, python3-wrapt, python3-yaml, r-cran-rmarkdown dpkg-deb: building package 'sbuild-build-depends-snakemake-dummy' in '/<>/resolver-2poXGD/apt_archive/sbuild-build-depends-snakemake-dummy.deb'. Ign:1 copy:/<>/resolver-2poXGD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2poXGD/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-2poXGD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2poXGD/apt_archive ./ Sources [376 B] Get:5 copy:/<>/resolver-2poXGD/apt_archive ./ Packages [703 B] Fetched 3198 B in 0s (122 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install snakemake build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-mathjax fonts-roboto-slab gettext gettext-base git git-man graphviz groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbsd0 libc-ares2 libcairo2 libcdt5 libcgraph6 libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libelf1 liberror-perl libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhttp-parser2.8 libhx509-5-heimdal libice6 libicu63 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjs-underscore libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.4-2 libldap-common libltdl7 liblua5.1-0 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libyaml-0-2 littler m4 man-db mime-support node-highlight.js node-normalize.css nodejs pandoc pandoc-data po-debconf python-babel-localedata python3 python3-alabaster python3-appdirs python3-atomicwrites python3-attr python3-babel python3-boto python3-certifi python3-chardet python3-commonmark-bkrs python3-configargparse python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-imagesize python3-jinja2 python3-jsonschema python3-lib2to3 python3-markupsafe python3-minimal python3-more-itertools python3-networkx python3-nose python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pygraphviz python3-pyparsing python3-pytest python3-pytools python3-ratelimiter python3-recommonmark python3-requests python3-roman python3-rpy2 python3-setuptools python3-six python3-smmap python3-sphinx python3-sphinx-bootstrap-theme python3-sphinx-rtd-theme python3-tz python3-urllib3 python3-wrapt python3-yaml python3.7 python3.7-minimal r-base-core r-cran-backports r-cran-base64enc r-cran-crayon r-cran-digest r-cran-evaluate r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jsonlite r-cran-knitr r-cran-later r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex r-cran-xfun r-cran-xtable r-cran-yaml sgml-base sphinx-common sphinx-rtd-theme-common ucf unzip x11-common xdg-utils xml-core zip Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make fonts-roboto gettext-doc libasprintf-dev libgettextpo-dev git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gsfonts graphviz-doc groff libgd-tools krb5-doc krb5-user libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libjs-html5shiv texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc php python ruby node-katex libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc python-commonmark-bkrs-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base python-git-doc python-jinja2-doc python-jsonschema-doc python3-gdal python3-scipy python-nose-doc gfortran python-numpy-doc python3-dev python3-numpy-dbg python-pandas-doc python-psutil-doc subversion python-pygments-doc ttf-bitstream-vera python-pygraphviz-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-rpy-docs python-setuptools-doc dvipng imagemagick-6.q16 latexmk python3-stemmer sphinx-doc texlive-fonts-recommended texlive-generic-extra python3.7-venv python3.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rstudioapi r-cran-lattice r-cran-ggplot2 r-cran-dbi r-cran-rsqlite r-cran-r.utils r-cran-forcats r-cran-dplyr r-cran-withr r-cran-testthat r-cran-httr r-cran-curl r-cran-plyr r-cran-formatr r-cran-rgl r-cran-htmlwidgets r-cran-webshot r-cran-reticulate r-cran-png r-cran-xml2 r-cran-tibble r-cran-getopt r-cran-rcurl r-cran-future r-cran-scales r-cran-inline r-cran-pillar r-cran-dygraphs r-cran-mockr r-cran-cairo libgdal-dev r-cran-testit r-cran-spdep r-cran-plm r-cran-zoo r-cran-survival r-cran-runit sgml-base-doc Recommended packages: curl | wget | lynx less ssh-client fonts-liberation libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin javascript-common krb5-locales publicsuffix libsasl2-modules libltdl-dev nodejs-doc libmail-sendmail-perl python3-pil python3-scipy python3-matplotlib python3-numexpr python3-tables python3-bs4 python3-html5lib python3-lxml r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-withr r-cran-mockery r-cran-testit r-cran-sp r-cran-tikzdevice r-cran-codetools r-cran-htmlwidgets libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-mathjax fonts-roboto-slab gettext gettext-base git git-man graphviz groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbsd0 libc-ares2 libcairo2 libcdt5 libcgraph6 libcroco3 libcurl3-gnutls libcurl4 libdatrie1 libelf1 liberror-perl libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhttp-parser2.8 libhx509-5-heimdal libice6 libicu63 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjs-underscore libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.4-2 libldap-common libltdl7 liblua5.1-0 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libyaml-0-2 littler m4 man-db mime-support node-highlight.js node-normalize.css nodejs pandoc pandoc-data po-debconf python-babel-localedata python3 python3-alabaster python3-appdirs python3-atomicwrites python3-attr python3-babel python3-boto python3-certifi python3-chardet python3-commonmark-bkrs python3-configargparse python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-imagesize python3-jinja2 python3-jsonschema python3-lib2to3 python3-markupsafe python3-minimal python3-more-itertools python3-networkx python3-nose python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pygraphviz python3-pyparsing python3-pytest python3-pytools python3-ratelimiter python3-recommonmark python3-requests python3-roman python3-rpy2 python3-setuptools python3-six python3-smmap python3-sphinx python3-sphinx-bootstrap-theme python3-sphinx-rtd-theme python3-tz python3-urllib3 python3-wrapt python3-yaml python3.7 python3.7-minimal r-base-core r-cran-backports r-cran-base64enc r-cran-crayon r-cran-digest r-cran-evaluate r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jsonlite r-cran-knitr r-cran-later r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex r-cran-xfun r-cran-xtable r-cran-yaml sbuild-build-depends-snakemake-dummy sgml-base sphinx-common sphinx-rtd-theme-common ucf unzip x11-common xdg-utils xml-core zip 0 upgraded, 253 newly installed, 0 to remove and 0 not upgraded. Need to get 138 MB of archives. After this operation, 589 MB of additional disk space will be used. Get:1 copy:/<>/resolver-2poXGD/apt_archive ./ sbuild-build-depends-snakemake-dummy 0.invalid.0 [1028 B] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpython3.7-minimal amd64 3.7.2-1 [545 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 libexpat1 amd64 2.2.6-1 [87.2 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python3.7-minimal amd64 3.7.2-1 [1687 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 python3-minimal amd64 3.7.1-1ubuntu1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 libmpdec2 amd64 2.4.2-2 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpython3.7-stdlib amd64 3.7.2-1 [1731 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python3.7 amd64 3.7.2-1 [277 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 libpython3-stdlib amd64 3.7.1-1ubuntu1 [7128 B] Get:11 http://ftpmaster.internal/ubuntu disco/main amd64 python3 amd64 3.7.1-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 libbsd0 amd64 0.9.1-1 [44.6 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 libxdmcp6 amd64 1:1.1.2-3 [10.7 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb1 amd64 1.13.1-2 [45.2 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-data all 2:1.6.7-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-6 amd64 2:1.6.7-1 [572 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:20 http://ftpmaster.internal/ubuntu disco/universe amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 groff-base amd64 1.22.4-1 [861 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 libpipeline1 amd64 1.5.0-2 [25.7 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 man-db amd64 2.8.4-3 [1028 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 libice6 amd64 2:1.0.9-2 [40.2 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:28 http://ftpmaster.internal/ubuntu disco/universe amd64 node-normalize.css all 8.0.1-1 [9976 B] Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 sgml-base all 1.29 [12.3 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 libmagic-mgc amd64 1:5.34-2 [197 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 libmagic1 amd64 1:5.34-2 [72.3 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 file amd64 1:5.34-2 [22.8 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libelf1 amd64 0.175-2 [44.2 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libfribidi0 amd64 1.0.5-3 [26.1 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 libglib2.0-0 amd64 2.58.1-2 [1176 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libicu63 amd64 63.1-5 [8284 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 libxml2 amd64 2.9.4+dfsg1-7ubuntu3 [625 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 libyaml-0-2 amd64 0.2.1-1 [46.7 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 python3-yaml amd64 3.13-1 [117 kB] Get:40 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 ucf all 3.0038+nmu1 [51.6 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 gettext-base amd64 0.19.8.1-9 [50.1 kB] Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libkrb5support0 amd64 1.16.2-1 [31.2 kB] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libk5crypto3 amd64 1.16.2-1 [85.5 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libkeyutils1 amd64 1.5.9-9.3 [9640 B] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libkrb5-3 amd64 1.16.2-1 [282 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgssapi-krb5-2 amd64 1.16.2-1 [122 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 m4 amd64 1.4.18-2 [199 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 autoconf all 2.69-11 [322 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 automake all 1:1.16.1-4 [522 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 autopoint all 0.19.8.1-9 [412 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 libtool all 2.4.6-6 [195 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 dh-autoreconf all 19 [16.1 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 dwz amd64 0.12-3 [78.1 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 libcroco3 amd64 0.6.12-3 [81.4 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 gettext amd64 0.19.8.1-9 [896 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 po-debconf all 1.0.21 [233 kB] Get:64 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 debhelper all 12ubuntu1 [887 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 python3-lib2to3 all 3.7.1-1ubuntu4 [74.2 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 python3-distutils all 3.7.1-1ubuntu4 [139 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 dh-python all 3.20180927ubuntu2 [90.9 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 xml-core all 0.18 [21.3 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 docutils-common all 0.14+dfsg-3 [156 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main amd64 libfreetype6 amd64 2.8.1-2ubuntu2 [335 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 libfontconfig1 amd64 2.13.0-5ubuntu3 [112 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig amd64 2.13.0-5ubuntu3 [170 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [514 kB] Get:76 http://ftpmaster.internal/ubuntu disco/universe amd64 fonts-mathjax all 2.7.4+dfsg-1 [2208 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-roboto-slab all 1.100263+20170512-1 [207 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-2.1 [41.4 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-2.1 [182 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-2.1 [29.4 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-2.1 [86.7 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-2.1 [47.8 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-2.1 [107 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-2.1 [206 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-2.1 [14.8 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-2.1 [96.4 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-common all 2.4.46+dfsg-5ubuntu3 [16.0 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-5ubuntu3 [154 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main amd64 libnghttp2-14 amd64 1.35.1-1 [78.9 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [54.5 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl3-gnutls amd64 7.61.0-1ubuntu2.2 [215 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main amd64 liberror-perl all 0.17027-1 [26.6 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main amd64 git-man all 1:2.19.1-1ubuntu1 [822 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main amd64 git amd64 1:2.19.1-1ubuntu1 [3529 kB] Get:97 http://ftpmaster.internal/ubuntu disco/universe amd64 libcdt5 amd64 2.40.1-5build2 [19.1 kB] Get:98 http://ftpmaster.internal/ubuntu disco/universe amd64 libcgraph6 amd64 2.40.1-5build2 [40.7 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8 amd64 2.0.0-0ubuntu2 [117 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:101 http://ftpmaster.internal/ubuntu disco/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main amd64 libtiff5 amd64 4.0.10-3 [157 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main amd64 libgd3 amd64 2.2.5-5 [118 kB] Get:106 http://ftpmaster.internal/ubuntu disco/universe amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [150 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main amd64 libpixman-1-0 amd64 0.36.0-1 [229 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-render0 amd64 1.13.1-2 [14.8 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-shm0 amd64 1.13.1-2 [5548 B] Get:110 http://ftpmaster.internal/ubuntu disco/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:111 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcairo2 amd64 1.16.0-2 [585 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main amd64 libltdl7 amd64 2.4.6-6 [38.8 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main amd64 libthai-data all 0.1.28-1 [134 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main amd64 libdatrie1 amd64 0.2.12-1 [18.3 kB] Get:115 http://ftpmaster.internal/ubuntu disco/main amd64 libthai0 amd64 0.1.28-1 [18.0 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main amd64 libpango-1.0-0 amd64 1.42.4-6 [155 kB] Get:117 http://ftpmaster.internal/ubuntu disco/main amd64 libgraphite2-3 amd64 1.3.12-1 [73.6 kB] Get:118 http://ftpmaster.internal/ubuntu disco/main amd64 libharfbuzz0b amd64 2.3.0-1 [365 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main amd64 libpangoft2-1.0-0 amd64 1.42.4-6 [35.6 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main amd64 libpangocairo-1.0-0 amd64 1.42.4-6 [23.2 kB] Get:121 http://ftpmaster.internal/ubuntu disco/universe amd64 libpathplan4 amd64 2.40.1-5build2 [21.9 kB] Get:122 http://ftpmaster.internal/ubuntu disco/universe amd64 libgvc6 amd64 2.40.1-5build2 [600 kB] Get:123 http://ftpmaster.internal/ubuntu disco/universe amd64 libgvpr2 amd64 2.40.1-5build2 [169 kB] Get:124 http://ftpmaster.internal/ubuntu disco/universe amd64 liblab-gamut1 amd64 2.40.1-5build2 [178 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB] Get:128 http://ftpmaster.internal/ubuntu disco/universe amd64 graphviz amd64 2.40.1-5build2 [559 kB] Get:129 http://ftpmaster.internal/ubuntu disco/main amd64 libblas3 amd64 3.8.0-2 [138 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl4 amd64 7.61.0-1ubuntu2.2 [217 kB] Get:131 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgfortran5 amd64 8.2.0-13ubuntu1 [587 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-parser2.8 amd64 2.8.1-1 [20.8 kB] Get:133 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-bootstrap all 3.4.0+dfsg-1 [227 kB] Get:134 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-d3 all 3.5.17-2 [131 kB] Get:135 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-es5-shim all 4.5.12-1 [35.6 kB] Get:136 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-highlight.js all 9.12.0+dfsg1-4 [277 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main amd64 libjs-jquery all 3.2.1-1 [152 kB] Get:138 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB] Get:139 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-sifter.js all 0.5.3+dfsg-1 [12.0 kB] Get:140 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1 [3466 B] Get:141 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1 [50.8 kB] Get:142 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:143 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-json all 0~20160510-1 [21.1 kB] Get:144 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] Get:145 http://ftpmaster.internal/ubuntu disco/main amd64 libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main amd64 libjs-sphinxdoc all 1.7.9-1 [92.3 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main amd64 liblapack3 amd64 3.8.0-2 [2099 kB] Get:148 http://ftpmaster.internal/ubuntu disco/universe amd64 liblua5.1-0 amd64 5.1.5-8.1build2 [100 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main amd64 libpaper1 amd64 1.1.26 [12.9 kB] Get:150 http://ftpmaster.internal/ubuntu disco/main amd64 libpaper-utils amd64 1.1.26 [8320 B] Get:151 http://ftpmaster.internal/ubuntu disco/main amd64 libtcl8.6 amd64 8.6.9+dfsg-1 [898 kB] Get:152 http://ftpmaster.internal/ubuntu disco/main amd64 libxft2 amd64 2.3.2-2 [38.5 kB] Get:153 http://ftpmaster.internal/ubuntu disco/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B] Get:154 http://ftpmaster.internal/ubuntu disco/main amd64 libtk8.6 amd64 8.6.9-1 [709 kB] Get:155 http://ftpmaster.internal/ubuntu disco/main amd64 libuv1 amd64 1.24.0-1 [69.3 kB] Get:156 http://ftpmaster.internal/ubuntu disco/main amd64 zip amd64 3.0-11build1 [167 kB] Get:157 http://ftpmaster.internal/ubuntu disco/main amd64 unzip amd64 6.0-21ubuntu1 [167 kB] Get:158 http://ftpmaster.internal/ubuntu disco/main amd64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:159 http://ftpmaster.internal/ubuntu disco/universe amd64 r-base-core amd64 3.5.2-1 [23.8 MB] Get:160 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-littler amd64 0.3.5-1 [294 kB] Get:161 http://ftpmaster.internal/ubuntu disco/universe amd64 littler all 0.3.5-1 [2768 B] Get:162 http://ftpmaster.internal/ubuntu disco/main amd64 libc-ares2 amd64 1.14.0-1 [37.1 kB] Get:163 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 nodejs amd64 8.11.4~dfsg-0ubuntu6 [5719 kB] Get:164 http://ftpmaster.internal/ubuntu disco/universe amd64 node-highlight.js all 9.12.0+dfsg1-4 [215 kB] Get:165 http://ftpmaster.internal/ubuntu disco/universe amd64 pandoc-data all 2.2.1-3build1 [75.3 kB] Get:166 http://ftpmaster.internal/ubuntu disco/universe amd64 pandoc amd64 2.2.1-3build1 [14.5 MB] Get:167 http://ftpmaster.internal/ubuntu disco/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1 [4071 kB] Get:168 http://ftpmaster.internal/ubuntu disco/main amd64 python3-appdirs all 1.4.3-1 [10.4 kB] Get:169 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-atomicwrites all 1.1.5-2 [6932 B] Get:170 http://ftpmaster.internal/ubuntu disco/main amd64 python3-attr all 18.2.0-1 [29.6 kB] Get:171 http://ftpmaster.internal/ubuntu disco/main amd64 python3-pkg-resources all 40.6.2-1 [99.6 kB] Get:172 http://ftpmaster.internal/ubuntu disco/main amd64 python3-tz all 2018.7-1 [24.7 kB] Get:173 http://ftpmaster.internal/ubuntu disco/main amd64 python3-babel all 2.6.0+dfsg.1-1 [83.4 kB] Get:174 http://ftpmaster.internal/ubuntu disco/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:175 http://ftpmaster.internal/ubuntu disco/main amd64 python3-chardet all 3.0.4-1 [80.3 kB] Get:176 http://ftpmaster.internal/ubuntu disco/main amd64 python3-idna all 2.6-1 [32.5 kB] Get:177 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python3-six all 1.12.0-1 [11.7 kB] Get:178 http://ftpmaster.internal/ubuntu disco/main amd64 python3-urllib3 all 1.24-1 [83.4 kB] Get:179 http://ftpmaster.internal/ubuntu disco/main amd64 python3-requests all 2.20.0-2 [46.7 kB] Get:180 http://ftpmaster.internal/ubuntu disco/main amd64 python3-boto all 2.44.0-1.1ubuntu1 [739 kB] Get:181 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-commonmark-bkrs all 0.5.4+ds-2 [28.3 kB] Get:182 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-configargparse all 0.13.0-1 [22.5 kB] Get:183 http://ftpmaster.internal/ubuntu disco/main amd64 python3-dateutil all 2.7.3-1 [63.6 kB] Get:184 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-datrie amd64 0.7.1-2build1 [106 kB] Get:185 http://ftpmaster.internal/ubuntu disco/main amd64 python3-decorator all 4.3.0-1 [9428 B] Get:186 http://ftpmaster.internal/ubuntu disco/main amd64 python3-roman all 2.0.0-3 [8624 B] Get:187 http://ftpmaster.internal/ubuntu disco/main amd64 python3-docutils all 0.14+dfsg-3 [363 kB] Get:188 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-smmap all 2.0.5-1 [21.3 kB] Get:189 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-gitdb all 2.0.5-1 [46.6 kB] Get:190 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-git all 2.1.11-1 [301 kB] Get:191 http://ftpmaster.internal/ubuntu disco/main amd64 python3-imagesize all 1.0.0-1 [5004 B] Get:192 http://ftpmaster.internal/ubuntu disco/main amd64 python3-markupsafe amd64 1.1.0-1 [13.8 kB] Get:193 http://ftpmaster.internal/ubuntu disco/main amd64 python3-jinja2 all 2.10-1 [95.2 kB] Get:194 http://ftpmaster.internal/ubuntu disco/main amd64 python3-jsonschema all 2.6.0-4ubuntu2 [31.1 kB] Get:195 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-more-itertools all 4.2.0-1 [39.3 kB] Get:196 http://ftpmaster.internal/ubuntu disco/main amd64 python3-networkx all 2.2-1ubuntu1 [800 kB] Get:197 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-nose all 1.3.7-4 [116 kB] Get:198 http://ftpmaster.internal/ubuntu disco/main amd64 python3-numpy amd64 1:1.14.5-1ubuntu8 [2027 kB] Get:199 http://ftpmaster.internal/ubuntu disco/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [52.2 kB] Get:200 http://ftpmaster.internal/ubuntu disco/main amd64 python3-packaging all 18.0-1 [18.3 kB] Get:201 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-pandas-lib amd64 0.23.3-1fakesync1ubuntu2 [3459 kB] Get:202 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-pandas all 0.23.3-1fakesync1ubuntu2 [1729 kB] Get:203 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-pluggy all 0.8.0-1 [17.5 kB] Get:204 http://ftpmaster.internal/ubuntu disco/main amd64 python3-psutil amd64 5.4.8-1 [140 kB] Get:205 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-py all 1.7.0-2 [65.5 kB] Get:206 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python3-pygments all 2.3.1+dfsg-1 [580 kB] Get:207 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-pygraphviz amd64 1.5-1 [72.3 kB] Get:208 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 python3-pytest all 3.10.1-2 [166 kB] Get:209 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-pytools all 2018.5.2-1 [40.4 kB] Get:210 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5548 B] Get:211 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-recommonmark all 0.4.0+ds-5 [14.9 kB] Get:212 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-rpy2 amd64 2.9.5-1 [157 kB] Get:213 http://ftpmaster.internal/ubuntu disco/main amd64 python3-setuptools all 40.6.2-1 [251 kB] Get:214 http://ftpmaster.internal/ubuntu disco/main amd64 sphinx-common all 1.7.9-1 [437 kB] Get:215 http://ftpmaster.internal/ubuntu disco/main amd64 python3-alabaster all 0.7.8-1 [18.5 kB] Get:216 http://ftpmaster.internal/ubuntu disco/main amd64 python3-sphinx all 1.7.9-1 [449 kB] Get:217 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-sphinx-bootstrap-theme all 0.6.5-1 [419 kB] Get:218 http://ftpmaster.internal/ubuntu disco/main amd64 libjs-modernizr all 2.6.2+ds1-1ubuntu1 [46.7 kB] Get:219 http://ftpmaster.internal/ubuntu disco/main amd64 sphinx-rtd-theme-common all 0.4.2+dfsg-1 [1019 kB] Get:220 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-sphinx-rtd-theme all 0.4.2+dfsg-1 [5332 B] Get:221 http://ftpmaster.internal/ubuntu disco/main amd64 python3-wrapt amd64 1.10.11-1 [30.0 kB] Get:222 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-backports amd64 1.1.3-1 [55.5 kB] Get:223 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-base64enc amd64 0.1-3-2 [27.4 kB] Get:224 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-crayon all 1.3.4-4ubuntu1 [499 kB] Get:225 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-digest amd64 0.6.18-1 [130 kB] Get:226 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-evaluate all 0.12-1 [77.6 kB] Get:227 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-glue amd64 1.3.0-1 [91.4 kB] Get:228 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-highr all 0.7+dfsg-1 [39.7 kB] Get:229 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-pkgkitten all 0.1.4-2 [21.6 kB] Get:230 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rcpp amd64 1.0.0-1 [3295 kB] Get:231 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-htmltools amd64 0.3.6-2 [170 kB] Get:232 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-r6 all 2.3.0-1 [73.7 kB] Get:233 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 r-cran-rlang amd64 0.3.0.1-2 [1029 kB] Get:234 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-later amd64 0.7.5+dfsg-2 [71.2 kB] Get:235 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:236 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-promises amd64 1.0.1-2 [161 kB] Get:237 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-httpuv amd64 1.4.5+dfsg-1 [291 kB] Get:238 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-jsonlite amd64 1.6+dfsg-1 [437 kB] Get:239 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-mime amd64 0.6-1 [34.9 kB] Get:240 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-markdown amd64 0.9+dfsg-1 [126 kB] Get:241 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-stringi amd64 1.2.4-1ubuntu2 [8682 kB] Get:242 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-stringr all 1.3.1-2 [175 kB] Get:243 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-yaml amd64 2.2.0-1 [98.3 kB] Get:244 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-xfun all 0.4-1 [146 kB] Get:245 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-mathjax all 2.7.4+dfsg-1 [5654 kB] Get:246 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-knitr all 1.21+dfsg-2 [856 kB] Get:247 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rprojroot all 1.3-2-2 [97.0 kB] Get:248 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-tinytex all 0.9-1 [88.9 kB] Get:249 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-xtable all 1:1.8-3-1 [737 kB] Get:250 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-sourcetools amd64 0.1.7-2 [45.2 kB] Get:251 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [28.4 kB] Get:252 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-shiny all 1.2.0+dfsg-1 [3012 kB] Get:253 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rmarkdown all 1.10+dfsg-2 [963 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 138 MB in 12s (11.7 MB/s) Selecting previously unselected package libpython3.7-minimal:amd64. 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Setting up libjs-jquery (3.2.1-1) ... Setting up git-man (1:2.19.1-1ubuntu1) ... Setting up libpathplan4 (2.40.1-5build2) ... Setting up fonts-mathjax (2.7.4+dfsg-1) ... Setting up liblab-gamut1 (2.40.1-5build2) ... Setting up libjs-highlight.js (9.12.0+dfsg1-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libnghttp2-14:amd64 (1.35.1-1) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libjs-mathjax (2.7.4+dfsg-1) ... Setting up libicu63:amd64 (63.1-5) ... Setting up liberror-perl (0.17027-1) ... Setting up libjbig0:amd64 (2.1-3.1build1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libuv1:amd64 (1.24.0-1) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libelf1:amd64 (0.175-2) ... Setting up libglib2.0-0:amd64 (2.58.1-2) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up pandoc-data (2.2.1-3build1) ... Setting up unzip (6.0-21ubuntu1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up node-normalize.css (8.0.1-1) ... Setting up libjs-sphinxdoc (1.7.9-1) ... Setting up libdatrie1:amd64 (0.2.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libjpeg-turbo8:amd64 (2.0.0-0ubuntu2) ... Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up sgml-base (1.29) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libjs-es5-shim (4.5.12-1) ... Setting up libkrb5support0:amd64 (1.16.2-1) ... Setting up ucf (3.0038+nmu1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Setting up zip (3.0-11build1) ... 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Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libgfortran5:amd64 (8.2.0-13ubuntu1) ... Setting up libc-ares2:amd64 (1.14.0-1) ... Setting up fonts-roboto-slab (1.100263+20170512-1) ... Setting up libcdt5 (2.40.1-5build2) ... Setting up libjs-modernizr (2.6.2+ds1-1ubuntu1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libcgraph6 (2.40.1-5build2) ... Setting up libwebp6:amd64 (0.6.1-2) ... 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Setting up libkrb5-3:amd64 (1.16.2-1) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:amd64 (3.7.1-1ubuntu1) ... Setting up libfontconfig1:amd64 (2.13.0-5ubuntu3) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up node-highlight.js (9.12.0+dfsg1-4) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up python3-numpy (1:1.14.5-1ubuntu8) ... Setting up python3-alabaster (0.7.8-1) ... Setting up python3-idna (2.6-1) ... Setting up python3-six (1.12.0-1) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up python3-commonmark-bkrs (0.5.4+ds-2) ... Setting up python3-more-itertools (4.2.0-1) ... Setting up python3-appdirs (1.4.3-1) ... Setting up python3-pkg-resources (40.6.2-1) ... Setting up python3-pluggy (0.8.0-1) ... Setting up python3-datrie:amd64 (0.7.1-2build1) ... Setting up python3-psutil (5.4.8-1) ... Setting up python3-markupsafe (1.1.0-1) ... Setting up python3-smmap (2.0.5-1) ... Setting up python3-pandas-lib (0.23.3-1fakesync1ubuntu2) ... Setting up libgssapi-krb5-2:amd64 (1.16.2-1) ... Setting up python3-jsonschema (2.6.0-4ubuntu2) ... update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode Setting up python3-gitdb (2.0.5-1) ... Setting up python3-configargparse (0.13.0-1) ... Setting up python3-wrapt (1.10.11-1) ... Setting up python3-nose (1.3.7-4) ... Setting up python3-chardet (3.0.4-1) ... Setting up python3-jinja2 (2.10-1) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up python3-attr (18.2.0-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up python3-urllib3 (1.24-1) ... Setting up python3-packaging (18.0-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up python3-lib2to3 (3.7.1-1ubuntu4) ... Setting up python3-decorator (4.3.0-1) ... Setting up python3-tz (2018.7-1) ... Setting up python3-distutils (3.7.1-1ubuntu4) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up python3-dateutil (2.7.3-1) ... Setting up python3-sphinx-bootstrap-theme (0.6.5-1) ... Setting up python3-atomicwrites (1.1.5-2) ... Setting up python3-pygments (2.3.1+dfsg-1) ... Setting up python3-yaml (3.13-1) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-imagesize (1.0.0-1) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up python3-py (1.7.0-2) ... Setting up python3-pytools (2018.5.2-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up python3-pytest (3.10.1-2) ... 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Setting up libpangocairo-1.0-0:amd64 (1.42.4-6) ... Setting up libgvc6 (2.40.1-5build2) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.5-1) ... Setting up littler (0.3.5-1) ... Setting up python3-rpy2 (2.9.5-1) ... Setting up r-cran-crayon (1.3.4-4ubuntu1) ... Setting up r-cran-xfun (0.4-1) ... Setting up r-cran-evaluate (0.12-1) ... Setting up r-cran-jsonlite (1.6+dfsg-1) ... Setting up r-cran-sourcetools (0.1.7-2) ... Setting up r-cran-stringi (1.2.4-1ubuntu2) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up r-cran-r6 (2.3.0-1) ... Setting up r-cran-mime (0.6-1) ... Setting up r-cran-yaml (2.2.0-1) ... Setting up r-cran-rlang (0.3.0.1-2) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-xtable (1:1.8-3-1) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-tinytex (0.9-1) ... Setting up graphviz (2.40.1-5build2) ... Setting up r-cran-highr (0.7+dfsg-1) ... Setting up python3-pygraphviz (1.5-1) ... Setting up r-cran-base64enc (0.1-3-2) ... Setting up r-cran-backports (1.1.3-1) ... Setting up r-cran-stringr (1.3.1-2) ... Setting up r-cran-htmltools (0.3.6-2) ... Setting up r-cran-markdown (0.9+dfsg-1) ... Setting up r-cran-later (0.7.5+dfsg-2) ... Setting up r-cran-rprojroot (1.3-2-2) ... Setting up r-cran-promises (1.0.1-2) ... Setting up r-cran-knitr (1.21+dfsg-2) ... Setting up r-cran-httpuv (1.4.5+dfsg-1) ... Setting up r-cran-shiny (1.2.0+dfsg-1) ... Setting up r-cran-rmarkdown (1.10+dfsg-2) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-3) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-3) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-recommonmark (0.4.0+ds-5) ... Setting up python3-sphinx (1.7.9-1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python3-sphinx-rtd-theme (0.4.2+dfsg-1) ... Setting up debhelper (12ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up sbuild-build-depends-snakemake-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... 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r-cran-htmltools_0.3.6-2 r-cran-httpuv_1.4.5+dfsg-1 r-cran-jsonlite_1.6+dfsg-1 r-cran-knitr_1.21+dfsg-2 r-cran-later_0.7.5+dfsg-2 r-cran-littler_0.3.5-1 r-cran-magrittr_1.5-5 r-cran-markdown_0.9+dfsg-1 r-cran-mime_0.6-1 r-cran-pkgkitten_0.1.4-2 r-cran-promises_1.0.1-2 r-cran-r6_2.3.0-1 r-cran-rcpp_1.0.0-1 r-cran-rlang_0.3.0.1-2 r-cran-rmarkdown_1.10+dfsg-2 r-cran-rprojroot_1.3-2-2 r-cran-shiny_1.2.0+dfsg-1 r-cran-sourcetools_0.1.7-2 r-cran-stringi_1.2.4-1ubuntu2 r-cran-stringr_1.3.1-2 r-cran-tinytex_0.9-1 r-cran-xfun_0.4-1 r-cran-xtable_1:1.8-3-1 r-cran-yaml_2.2.0-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-snakemake-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.7.9-1 sphinx-rtd-theme-common_0.4.2+dfsg-1 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-3 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-21ubuntu1 util-linux_2.32-0.1ubuntu2 x11-common_1:7.7+19ubuntu8 xdg-utils_1.1.3-1ubuntu2 xml-core_0.18 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jan 4 09:55:50 2019 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snakemake_5.4.0-1.dsc dpkg-source: info: extracting snakemake in snakemake-5.4.0 dpkg-source: info: unpacking snakemake_5.4.0.orig.tar.gz dpkg-source: info: unpacking snakemake_5.4.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-the-inbuild-sphinx.ext.napoleon.patch dpkg-source: info: applying 0003-Use-debian-s-mathjax-package.patch dpkg-source: info: applying 0003-Compat-fix.patch dpkg-source: info: applying 0006-restore-bin.patch dpkg-source: info: applying 0008-remove_sphinx.ext.patch dpkg-source: info: applying 0009-skip-test-without-google-cloud-sdk.patch dpkg-source: info: applying 0011-fix-privacy-breach.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16232599 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16232599 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16232599 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 5.4.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.7_snakemake/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/common.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/exceptions.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/scheduler.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/conda.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/checkpoints.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/utils.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/persistence.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/output_index.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/decorators.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/parser.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/gui.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/__main__.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/_version.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/executors.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/stats.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/wrapper.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/dag.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/io.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/cwl.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/workflow.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/script.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/logging.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/shell.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/singularity.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/benchmark.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/rules.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/jobs.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/__init__.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake creating /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/gridftp.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/SFTP.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/webdav.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/GS.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/XRootD.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/HTTP.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/S3.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/iRODS.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/gfal.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/EGA.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/NCBI.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/FTP.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/dropbox.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/__init__.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote copying snakemake/remote/S3Mocked.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote creating /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/report copying snakemake/report/__init__.py -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/report copying snakemake/report.css -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/jobscript.sh -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/gui.html -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake copying snakemake/report/report.html -> /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/report UPDATING /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py set /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py to '5.4.0' PATH=/<>/.pybuild/cpython3_3.7_snakemake/build/bin:/<>/.pybuild/cpython3_3.7_snakemake/build/bin:/<>/.pybuild/cpython3_3.7_snakemake/build/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ PYTHONPATH=/<>/.pybuild/cpython3_3.7_snakemake/build \ python3 setup.py build_sphinx running build_sphinx creating /<>/build creating /<>/build/sphinx creating /<>/build/sphinx/doctrees creating /<>/build/sphinx/html Running Sphinx v1.7.9 loading pickled environment... not yet created building [mo]: targets for 0 po files that are out of date building [html]: targets for 26 source files that are out of date updating environment: 26 added, 0 changed, 0 removed reading sources... [ 3%] api_reference/snakemake reading sources... [ 7%] api_reference/snakemake_utils reading sources... [ 11%] executable reading sources... [ 15%] getting_started/examples reading sources... [ 19%] getting_started/installation reading sources... [ 23%] index reading sources... [ 26%] project_info/authors reading sources... [ 30%] project_info/citations reading sources... [ 34%] project_info/contributing reading sources... [ 38%] project_info/faq reading sources... [ 42%] project_info/history reading sources... [ 46%] project_info/license reading sources... [ 50%] project_info/more_resources reading sources... [ 53%] snakefiles/configuration reading sources... [ 57%] snakefiles/deployment reading sources... [ 61%] snakefiles/modularization reading sources... [ 65%] snakefiles/remote_files reading sources... [ 69%] snakefiles/reporting reading sources... [ 73%] snakefiles/rules reading sources... [ 76%] snakefiles/utils reading sources... [ 80%] snakefiles/writing_snakefiles reading sources... [ 84%] tutorial/additional_features reading sources... [ 88%] tutorial/advanced reading sources... [ 92%] tutorial/basics reading sources... [ 96%] tutorial/setup reading sources... [100%] tutorial/tutorial /<>/docs/executable.rst:322: WARNING: Unknown directive type "argparse". .. argparse:: :module: snakemake :func: get_argument_parser :prog: snakemake All command line options can be printed by calling ``snakemake -h``. /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/project_info/history.rst:7: WARNING: Duplicate explicit target name: "the docs". /<>/docs/snakefiles/modularization.rst:7: WARNING: Duplicate explicit target name: "cwl". /<>/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/tutorial/basics.rst:369: WARNING: Title underline too short. Step 6: Using custom scripts :::::::::::::::::::: /<>/docs/tutorial/basics.rst:369: WARNING: Title underline too short. Step 6: Using custom scripts :::::::::::::::::::: /<>/docs/tutorial/basics.rst:371: WARNING: Mismatch: both interpreted text role prefix and reference suffix. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 3%] api_reference/snakemake writing output... [ 7%] api_reference/snakemake_utils writing output... [ 11%] executable writing output... [ 15%] getting_started/examples writing output... [ 19%] getting_started/installation writing output... [ 23%] index writing output... [ 26%] project_info/authors writing output... [ 30%] project_info/citations writing output... [ 34%] project_info/contributing writing output... [ 38%] project_info/faq writing output... [ 42%] project_info/history writing output... [ 46%] project_info/license writing output... [ 50%] project_info/more_resources writing output... [ 53%] snakefiles/configuration writing output... [ 57%] snakefiles/deployment writing output... [ 61%] snakefiles/modularization writing output... [ 65%] snakefiles/remote_files writing output... [ 69%] snakefiles/reporting writing output... [ 73%] snakefiles/rules writing output... [ 76%] snakefiles/utils writing output... [ 80%] snakefiles/writing_snakefiles writing output... [ 84%] tutorial/additional_features writing output... [ 88%] tutorial/advanced writing output... [ 92%] tutorial/basics writing output... [ 96%] tutorial/setup writing output... [100%] tutorial/tutorial /<>/docs/tutorial/advanced.rst:206: WARNING: undefined label: tutorial-report (if the link has no caption the label must precede a section header) generating indices... genindex py-modindex highlighting module code... [ 50%] snakemake highlighting module code... [100%] snakemake.utils writing additional pages... search copying images... [ 16%] getting_started/img/cufflinks-dag.png copying images... [ 33%] getting_started/img/c-dag.png copying images... [ 50%] getting_started/img/latex-dag.png copying images... [ 66%] project_info/img/idea.png copying images... [ 83%] tutorial/workflow/dag_index.png copying images... [100%] tutorial/workflow/dag_call.png copying downloadable files... [100%] tests/test_report/report.html copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 12 warnings. The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/<>' dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:269: chmod +x /<>/bin/snakemake; cp -r /<>/bin /<>/tests /<>/.pybuild/cpython3_3.7_snakemake/build I: pybuild base:217: cd /<>/.pybuild/cpython3_3.7_snakemake/build; python3.7 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.7.2, pytest-3.10.1, py-1.7.0, pluggy-0.8.0 rootdir: /<>, inifile: collected 4 items tests/test_io.py . [ 25%] tests/test_schema.py ... [100%] =============================== warnings summary =============================== snakemake/__init__.py:570 /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__init__.py:570: DeprecationWarning: invalid escape sequence \w valid = re.compile("[a-zA-Z_]\w*$") snakemake/__init__.py:597 /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__init__.py:597: DeprecationWarning: invalid escape sequence \w valid = re.compile("[a-zA-Z_]\w*$") snakemake/rules.py:11 /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/rules.py:11: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import defaultdict, Iterable snakemake/io.py:878 /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/io.py:878: DeprecationWarning: invalid escape sequence \+ file_sub = re.sub("^git\+file:/+",'/',path) snakemake/utils.py:13 /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/utils.py:13: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import Mapping snakemake/script.py:29 /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/script.py:29: DeprecationWarning: invalid escape sequence \d PY_VER_RE = re.compile("Python (?P\d+\.\d+).*") /usr/lib/python3/dist-packages/pandas/core/tools/datetimes.py:3 /usr/lib/python3/dist-packages/pandas/core/tools/datetimes.py:3: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import MutableMapping .pybuild/cpython3_3.7_snakemake/build/tests/test_schema.py::test_config /usr/lib/python3/dist-packages/jsonschema/compat.py:6: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import MutableMapping, Sequence # noqa -- Docs: https://docs.pytest.org/en/latest/warnings.html ===================== 4 passed, 8 warnings in 2.66 seconds ===================== I: pybuild pybuild:295: rm -fr /<>/.pybuild/cpython3_3.7_snakemake/build/bin /<>/.pybuild/cpython3_3.7_snakemake/build/tests create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/snakemake running install running build running build_py UPDATING /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py set /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py to '5.4.0' running install_lib creating /<>/debian/snakemake/usr creating /<>/debian/snakemake/usr/lib creating /<>/debian/snakemake/usr/lib/python3.7 creating /<>/debian/snakemake/usr/lib/python3.7/dist-packages creating /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/common.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/persistence.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/singularity.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/stats.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/io.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/workflow.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/jobs.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/__init__.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/cwl.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/script.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/dag.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/wrapper.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/utils.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/scheduler.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/checkpoints.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/exceptions.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/_version.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/executors.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/parser.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/logging.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/shell.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/rules.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/common.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/conda.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__pycache__/output_index.cpython-37.pyc -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/exceptions.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/report copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/report/report.html -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/report copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/report/__init__.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/report copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/scheduler.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/conda.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/checkpoints.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/utils.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/jobscript.sh -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/persistence.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/output_index.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/decorators.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/parser.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/gui.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__main__.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/_version.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/gui.html -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/report.css -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/executors.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/stats.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/wrapper.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/dag.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/gridftp.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/SFTP.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/webdav.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/GS.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/XRootD.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/HTTP.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/S3.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/iRODS.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/gfal.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/EGA.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/NCBI.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/FTP.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/dropbox.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/__init__.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/remote/S3Mocked.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/io.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/cwl.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/workflow.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/script.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/logging.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/shell.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/singularity.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/benchmark.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/rules.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/jobs.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.7_snakemake/build/snakemake/__init__.py -> /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/common.py to common.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/exceptions.py to exceptions.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/report/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/scheduler.py to scheduler.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/conda.py to conda.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/checkpoints.py to checkpoints.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/utils.py to utils.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/persistence.py to persistence.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/output_index.py to output_index.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/decorators.py to decorators.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/parser.py to parser.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/gui.py to gui.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__main__.py to __main__.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/_version.py to _version.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/executors.py to executors.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/stats.py to stats.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/wrapper.py to wrapper.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/dag.py to dag.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/gridftp.py to gridftp.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/SFTP.py to SFTP.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/webdav.py to webdav.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/GS.py to GS.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/XRootD.py to XRootD.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/HTTP.py to HTTP.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/S3.py to S3.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/iRODS.py to iRODS.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/gfal.py to gfal.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/EGA.py to EGA.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/NCBI.py to NCBI.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/FTP.py to FTP.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/dropbox.py to dropbox.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/__init__.py to __init__.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/remote/S3Mocked.py to S3Mocked.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/io.py to io.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/cwl.py to cwl.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/workflow.py to workflow.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/script.py to script.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/logging.py to logging.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/shell.py to shell.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/singularity.py to singularity.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/benchmark.py to benchmark.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/rules.py to rules.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/jobs.py to jobs.cpython-37.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake/__init__.py to __init__.cpython-37.pyc running install_egg_info running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to /<>/debian/snakemake/usr/lib/python3.7/dist-packages/snakemake-5.4.0.egg-info Skipping SOURCES.txt running install_scripts Installing snakemake script to /<>/debian/snakemake/usr/bin Installing snakemake-bash-completion script to /<>/debian/snakemake/usr/bin dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package snakemake: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild INFO: pkgstriptranslations version 143 pkgstriptranslations: processing snakemake (in debian/snakemake); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/snakemake/DEBIAN/control, package snakemake, directory debian/snakemake pkgstripfiles: Truncating usr/share/doc/snakemake/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package snakemake ... ...oo.....oooooo pkgstripfiles: PNG optimization (8/0) for package snakemake took 14 s dpkg-deb: building package 'snakemake' in '../snakemake_5.4.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../snakemake_5.4.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190104-2321 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snakemake_5.4.0-1_amd64.changes: -------------------------------- Format: 1.8 Date: Fri, 04 Jan 2019 10:47:45 +0100 Source: snakemake Binary: snakemake Architecture: all Version: 5.4.0-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: snakemake - pythonic workflow management system Changes: snakemake (5.4.0-1) unstable; urgency=medium . * Team upload. * New upstream version. New Build-Dep: python3-git * Standards-Version: 4.3.0 Checksums-Sha1: 3fbfe000ff3da250ea824614578c05f2e4dc799f 661372 snakemake_5.4.0-1_all.deb dba356936088b69480f508685eca49b4d699e003 12146 snakemake_5.4.0-1_amd64.buildinfo Checksums-Sha256: 468941a9638592804f7f5fe511eb9e45e77229066ddd0ed25c21486110ba9222 661372 snakemake_5.4.0-1_all.deb 0090df8f9d6410fe5e92d790276b4921144a32e12daf23d89c5b56008e89f49c 12146 snakemake_5.4.0-1_amd64.buildinfo Files: 5486ad38ed48e0939784d3fcd2054c53 661372 science optional snakemake_5.4.0-1_all.deb 20303e1dccbb7b7a18f230e94100df19 12146 science optional snakemake_5.4.0-1_amd64.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ snakemake_5.4.0-1_all.deb ------------------------- new debian package, version 2.0. size 661372 bytes: control archive=5296 bytes. 1167 bytes, 17 lines control 13470 bytes, 151 lines md5sums 244 bytes, 12 lines * postinst #!/bin/sh 393 bytes, 12 lines * prerm #!/bin/sh Package: snakemake Version: 5.4.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3539 Depends: python3-appdirs, python3-configargparse, python3-datrie, python3-docutils, python3-git, python3-jsonschema, python3-ratelimiter, python3-requests, python3-wrapt, python3-yaml, python3:any, libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common (>= 0.4.2+dfsg), ca-certificates, libjs-d3, libjs-mathjax, python3-networkx, python3-psutil, python3-pygraphviz, python3-pytools, python3-recommonmark, python3-rpy2, python3-setuptools Recommends: python3-boto, r-cran-rmarkdown Section: science Priority: optional Homepage: https://bitbucket.org/snakemake/snakemake Description: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. drwxr-xr-x root/root 0 2019-01-04 09:47 ./ drwxr-xr-x root/root 0 2019-01-04 09:47 ./usr/ drwxr-xr-x root/root 0 2019-01-04 09:47 ./usr/bin/ -rwxr-xr-x root/root 392 2019-01-04 09:47 ./usr/bin/snakemake -rwxr-xr-x root/root 424 2019-01-04 09:47 ./usr/bin/snakemake-bash-completion drwxr-xr-x root/root 0 2019-01-04 09:47 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-04 09:47 ./usr/lib/python3/ drwxr-xr-x root/root 0 2019-01-04 09:47 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2019-01-04 09:47 ./usr/lib/python3/dist-packages/snakemake-5.4.0.egg-info/ -rw-r--r-- root/root 983 2019-01-04 09:47 ./usr/lib/python3/dist-packages/snakemake-5.4.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2019-01-04 09:47 ./usr/lib/python3/dist-packages/snakemake-5.4.0.egg-info/dependency_links.txt 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 45896 Build-Time: 55 Distribution: disco-proposed Host Architecture: amd64 Install-Time: 153 Job: snakemake_5.4.0-1.dsc Machine Architecture: amd64 Package: snakemake Package-Time: 212 Source-Version: 5.4.0-1 Space: 45896 Status: successful Version: 5.4.0-1 -------------------------------------------------------------------------------- Finished at 20190104-2321 Build needed 00:03:32, 45896k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16232599 Scanning for processes to kill in build PACKAGEBUILD-16232599