RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-024 4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:24:03 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 10 Nov 11:08:13 ntpdate[1818]: adjust time server 10.211.37.1 offset 0.000225 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13706080 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-13706080 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13706080 Starting target for build PACKAGEBUILD-13706080 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13706080 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13706080 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13706080 Updating target for build PACKAGEBUILD-13706080 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1065 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [541 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8254 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4859 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [193 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [94.7 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [822 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [455 kB] Fetched 16.7 MB in 3s (4497 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils binutils-common binutils-x86-64-linux-gnu build-essential coreutils cpp-7 debconf dpkg dpkg-dev e2fslibs e2fsprogs findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libmpx2 libnettle6 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 linux-libc-dev multiarch-support openssl perl perl-base perl-modules-5.26 pinentry-curses systemd systemd-sysv sysvinit-utils tzdata 84 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 60.0 MB of archives. After this operation, 613 kB of additional disk space will be used. 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7.2.0-13ubuntu1 [11.8 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgomp1 amd64 7.2.0-13ubuntu1 [76.4 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libatomic1 amd64 7.2.0-13ubuntu1 [8968 B] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libasan4 amd64 7.2.0-13ubuntu1 [359 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 liblsan0 amd64 7.2.0-13ubuntu1 [133 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libtsan0 amd64 7.2.0-13ubuntu1 [281 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libubsan0 amd64 7.2.0-13ubuntu1 [126 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcilkrts5 amd64 7.2.0-13ubuntu1 [42.5 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libquadmath0 amd64 7.2.0-13ubuntu1 [133 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 cpp-7 amd64 7.2.0-13ubuntu1 [6729 kB] 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http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl-base amd64 5.26.1-2ubuntu1 [1389 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 base-passwd amd64 3.5.44 [47.2 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.26-0ubuntu2 [593 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 sysvinit-utils amd64 2.88dsf-59.10ubuntu1 [18.6 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libudev1 amd64 235-2ubuntu2 [54.2 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libapt-pkg5.0 amd64 1.6~alpha4 [778 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgpg-error0 amd64 1.27-5 [36.9 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcrypt20 amd64 1.7.9-2 [402 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.1.15-1ubuntu8 [186 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 apt amd64 1.6~alpha4 [1144 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 debconf all 1.5.64 [124 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libapparmor1 amd64 2.11.0-2ubuntu18 [28.8 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.1 [13.2 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3 amd64 2:8.39-5ubuntu3 [229 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libselinux1 amd64 2.7-2 [68.3 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd amd64 235-2ubuntu2 [2832 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libsystemd0 amd64 235-2ubuntu2 [196 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd-sysv amd64 235-2ubuntu2 [12.4 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main 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libkeyutils1 amd64 1.5.9-9.1ubuntu1 [9488 B] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:79 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 apt-transport-https all 1.6~alpha4 [1692 B] Get:80 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main amd64 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] Get:83 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libpsl5 amd64 0.18.0-4 [40.7 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main amd64 libcurl3-gnutls amd64 7.55.1-1ubuntu2.1 [193 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 60.0 MB in 6s (9756 kB/s) (Reading database ... 12676 files and directories currently installed.) 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Setting up libstdc++-7-dev:amd64 (7.2.0-13ubuntu1) ... Setting up perl (5.26.1-2ubuntu1) ... Setting up libkrb5-3:amd64 (1.15.2-2) ... Setting up binutils-x86-64-linux-gnu (2.29.1-7ubuntu1) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up libgssapi-krb5-2:amd64 (1.15.2-2) ... Setting up binutils (2.29.1-7ubuntu1) ... Setting up gcc-7 (7.2.0-13ubuntu1) ... Setting up g++-7 (7.2.0-13ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.55.1-1ubuntu2.1) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13706080 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-13706080 --arch=amd64 --dist=bionic-proposed --nolog -A sniffles_1.0.6+ds-1.dsc Initiating build PACKAGEBUILD-13706080 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:24:03 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-024.buildd +==============================================================================+ | sniffles 1.0.6+ds-1 (amd64) 10 Nov 2017 11:08 | +==============================================================================+ Package: sniffles Version: 1.0.6+ds-1 Source Version: 1.0.6+ds-1 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/sniffles-OUU7rP/sniffles-1.0.6+ds' with '<>' I: NOTICE: Log filtering will replace 'build/sniffles-OUU7rP' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13706080/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- sniffles_1.0.6+ds-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ob8PFE/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ob8PFE/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ob8PFE/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ob8PFE/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ob8PFE/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ob8PFE/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (246 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ob8PFE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12675 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), cmake, libbamtools-dev, libtclap-dev, zlib1g-dev, pandoc Filtered Build-Depends: debhelper (>= 10), cmake, libbamtools-dev, libtclap-dev, zlib1g-dev, pandoc dpkg-deb: building package 'sbuild-build-depends-sniffles-dummy' in '/<>/resolver-6g2kEY/apt_archive/sbuild-build-depends-sniffles-dummy.deb'. Ign:1 copy:/<>/resolver-6g2kEY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-6g2kEY/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-6g2kEY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-6g2kEY/apt_archive ./ Sources [245 B] Get:5 copy:/<>/resolver-6g2kEY/apt_archive ./ Packages [558 B] Fetched 2922 B in 0s (226 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install sniffles build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libcurl3-gnutls libustr-1.0-1 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbamtools-dev libbamtools2.4.0 libbsd0 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libjsoncpp1 liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1 libpipeline1 librhash0 libsigsegv2 libtclap-dev libtimedate-perl libtool libuv1 libxml2 libyaml-0-2 m4 man-db pandoc pandoc-data po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation ninja-build dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libbamtools-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbamtools-dev libbamtools2.4.0 libbsd0 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libjsoncpp1 liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1 libpipeline1 librhash0 libsigsegv2 libtclap-dev libtimedate-perl libtool libuv1 libxml2 libyaml-0-2 m4 man-db pandoc pandoc-data po-debconf sbuild-build-depends-sniffles-dummy zlib1g-dev 0 upgraded, 49 newly installed, 1 to remove and 0 not upgraded. Need to get 30.3 MB of archives. After this operation, 151 MB of additional disk space will be used. Get:1 copy:/<>/resolver-6g2kEY/apt_archive ./ sbuild-build-depends-sniffles-dummy 0.invalid.0 [888 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 groff-base amd64 1.22.3-9 [1144 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libbsd0 amd64 0.8.6-3 [41.7 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdmainutils amd64 9.0.12+nmu1ubuntu1 [179 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libpipeline1 amd64 1.4.2-1 [25.2 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 man-db amd64 2.7.6.1-2 [895 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 cmake-data all 3.9.5-1 [1268 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 liblzo2-2 amd64 2.08-1.2 [48.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libicu60 amd64 60.1-1ubuntu2 [8042 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-5ubuntu2 [669 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive13 amd64 3.2.2-3.1 [289 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libcurl3 amd64 7.55.1-1ubuntu2.1 [196 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libexpat1 amd64 2.2.3-2 [81.3 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libjsoncpp1 amd64 1.7.4-3 [73.6 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 librhash0 amd64 1.3.4-3 [77.0 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libuv1 amd64 1.11.0-2 [61.0 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 cmake amd64 3.9.5-1 [3106 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic-mgc amd64 1:5.32-1 [184 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic1 amd64 1:5.32-1 [68.4 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 file amd64 1:5.32-1 [22.0 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 libglib2.0-0 amd64 2.54.1-1ubuntu1 [1163 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libyaml-0-2 amd64 0.1.7-2ubuntu3 [47.2 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext-base amd64 0.19.8.1-4ubuntu1 [49.4 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 libsigsegv2 amd64 2.11-1 [13.2 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 autoconf all 2.69-11 [322 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 libtool all 2.4.6-2 [194 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-autoreconf all 14 [15.5 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-strip-nondeterminism all 0.040-1 [5196 B] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 libcroco3 amd64 0.6.12-1 [81.3 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext amd64 0.19.8.1-4ubuntu1 [1093 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 po-debconf all 1.0.20 [232 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 debhelper all 10.10.5ubuntu1 [876 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/universe amd64 libbamtools2.4.0 amd64 2.4.1+dfsg-2 [181 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/universe amd64 libbamtools-dev amd64 2.4.1+dfsg-2 [222 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/universe amd64 liblua5.1-0 amd64 5.1.5-8.1build1 [105 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/universe amd64 libluajit-5.1-common all 2.1.0~beta3+dfsg-5.1 [44.3 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/universe amd64 libluajit-5.1-2 amd64 2.1.0~beta3+dfsg-5.1 [227 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/universe amd64 libtclap-dev amd64 1.2.1-1 [710 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 pandoc-data all 1.19.2.4~dfsg-1build1 [40.4 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 pandoc amd64 1.19.2.4~dfsg-1build1 [6667 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.3 MB in 1s (20.5 MB/s) (Reading database ... 12675 files and directories currently installed.) 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Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up cmake-data (3.9.5-1) ... Setting up libpipeline1:amd64 (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:amd64 (0.8.6-3) ... Setting up libxml2:amd64 (2.9.4+dfsg1-5ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:amd64 (1:5.32-1) ... Setting up librhash0 (1.3.4-3) ... Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libyaml-0-2:amd64 (0.1.7-2ubuntu3) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up libluajit-5.1-2:amd64 (2.1.0~beta3+dfsg-5.1) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1build1) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up pandoc (1.19.2.4~dfsg-1build1) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libarchive13:amd64 (3.2.2-3.1) ... Setting up libbamtools-dev (2.4.1+dfsg-2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.9.5-1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up debhelper (10.10.5ubuntu1) ... Setting up sbuild-build-depends-sniffles-dummy (0.invalid.0) ... (Reading database ... 17728 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-98-generic amd64 (x86_64) Toolchain package versions: binutils_2.29.1-7ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-13ubuntu1 gcc-7_7.2.0-13ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-13ubuntu1 libstdc++6_7.2.0-13ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha4 apt-transport-https_1.6~alpha4 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-7ubuntu1 binutils-common_2.29.1-7ubuntu1 binutils-x86-64-linux-gnu_2.29.1-7ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.9.5-1 cmake-data_3.9.5-1 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-13ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.64 debhelper_10.10.5ubuntu1 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.1-0ubuntu4 file_1:5.32-1 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-13ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-13ubuntu1 gcc-7-base_7.2.0-13ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha4 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-3.1 libasan4_7.2.0-13ubuntu1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.3-3 libatomic1_7.2.0-13ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbamtools-dev_2.4.1+dfsg-2 libbamtools2.4.0_2.4.1+dfsg-2 libbinutils_2.29.1-7ubuntu1 libblkid1_2.30.1-0ubuntu4 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-13ubuntu1 libcilkrts5_7.2.0-13ubuntu1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3_7.55.1-1ubuntu2.1 libcurl3-gnutls_7.55.1-1ubuntu2.1 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libexpat1_2.2.3-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.1-0ubuntu4 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-13ubuntu1 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liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.1-0ubuntu4 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmpx2_7.2.0-13ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-5ubuntu3 libperl5.26_5.26.1-2ubuntu1 libpipeline1_1.4.2-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.18.0-4 libquadmath0_7.2.0-13ubuntu1 libreadline7_7.0-0ubuntu2 librhash0_1.3.4-3 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.1-0ubuntu4 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu14 libstdc++-7-dev_7.2.0-13ubuntu1 libstdc++6_7.2.0-13ubuntu1 libsystemd0_235-2ubuntu2 libtasn1-6_4.12-2.1 libtclap-dev_1.2.1-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-13ubuntu1 libubsan0_7.2.0-13ubuntu1 libudev1_235-2ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu4 libuv1_1.11.0-2 libwind0-heimdal_7.4.0.dfsg.1-2 libxml2_2.9.4+dfsg1-5ubuntu2 libyaml-0-2_0.1.7-2ubuntu3 linux-libc-dev_4.13.0-16.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.30.1-0ubuntu4 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu14 optipng_0.7.6-1build1 pandoc_1.19.2.4~dfsg-1build1 pandoc-data_1.19.2.4~dfsg-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-2ubuntu1 perl-base_5.26.1-2ubuntu1 perl-modules-5.26_5.26.1-2ubuntu1 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-sniffles-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2ubuntu2 systemd-sysv_235-2ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.1-0ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Nov 10 06:35:12 2017 UTC gpgv: using RSA key gpgv: issuer "afif@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./sniffles_1.0.6+ds-1.dsc dpkg-source: info: extracting sniffles in sniffles-1.0.6+ds dpkg-source: info: unpacking sniffles_1.0.6+ds.orig.tar.gz dpkg-source: info: unpacking sniffles_1.0.6+ds-1.debian.tar.xz dpkg-source: info: applying external-libs.patch dpkg-source: info: applying no-extra-binary.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13706080 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13706080 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13706080 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package sniffles dpkg-buildpackage: info: source version 1.0.6+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build sniffles-1.0.6+ds dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/sniffles-1.0.6+ds' dh_auto_clean find -name "*.mk" -delete rm -f makefile rm -f debian/sniffles.1 make[1]: Leaving directory '/<>/sniffles-1.0.6+ds' dh_autoreconf_clean dh_clean debian/rules build pandoc --from markdown --to man -s debian/sniffles.1.md -o debian/sniffles.1 dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/sniffles-1.0.6+ds' dh_auto_configure -- \ -DCMAKE_INCLUDE_PATH="/usr/include/bamtools" cd obj-x86_64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INCLUDE_PATH=/usr/include/bamtools -- The C compiler identification is GNU 7.2.0 -- The CXX compiler identification is GNU 7.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake-3.9/Modules/FindOpenMP.cmake:200 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "c" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): /usr/share/cmake-3.9/Modules/FindOpenMP.cmake:324 (_OPENMP_GET_FLAGS) CMakeLists.txt:25 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>/sniffles-1.0.6+ds' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 make[1]: Entering directory '/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/sniffles-1.0.6+ds -B/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/CMakeFiles /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/sniffles.dir/build.make src/CMakeFiles/sniffles.dir/depend make[3]: Entering directory '/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu' cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/sniffles-1.0.6+ds /<>/sniffles-1.0.6+ds/src /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src/CMakeFiles/sniffles.dir/DependInfo.cmake --color= Scanning dependencies of target sniffles make[3]: Leaving directory '/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/sniffles.dir/build.make src/CMakeFiles/sniffles.dir/build make[3]: Entering directory '/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/sniffles.dir/tree/Breakpoint_Tree.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/tree/Breakpoint_Tree.cpp.o -c /<>/sniffles-1.0.6+ds/src/tree/Breakpoint_Tree.cpp [ 9%] Building CXX object src/CMakeFiles/sniffles.dir/Genotyper/Genotyper.cpp.o [ 14%] Building CXX object src/CMakeFiles/sniffles.dir/Alignment.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/Genotyper/Genotyper.cpp.o -c /<>/sniffles-1.0.6+ds/src/Genotyper/Genotyper.cpp [ 19%] Building CXX object src/CMakeFiles/sniffles.dir/BamParser.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/Alignment.cpp.o -c /<>/sniffles-1.0.6+ds/src/Alignment.cpp cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/BamParser.cpp.o -c /<>/sniffles-1.0.6+ds/src/BamParser.cpp [ 23%] Building CXX object src/CMakeFiles/sniffles.dir/Sniffles.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/Sniffles.cpp.o -c /<>/sniffles-1.0.6+ds/src/Sniffles.cpp /<>/sniffles-1.0.6+ds/src/Genotyper/Genotyper.cpp: In member function ‘void Genotyper::update_file(Breakpoint_Tree&, breakpoint_node*&)’: /<>/sniffles-1.0.6+ds/src/Genotyper/Genotyper.cpp:219:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(move.c_str()); ~~~~~~^~~~~~~~~~~~~~ /<>/sniffles-1.0.6+ds/src/Genotyper/Genotyper.cpp: In member function ‘void Genotyper::update_SVs()’: /<>/sniffles-1.0.6+ds/src/Genotyper/Genotyper.cpp:293:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(del.c_str()); ~~~~~~^~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/sniffles.dir/Ignore_Regions.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/Ignore_Regions.cpp.o -c /<>/sniffles-1.0.6+ds/src/Ignore_Regions.cpp [ 33%] Building CXX object src/CMakeFiles/sniffles.dir/tree/Intervall_bed.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/tree/Intervall_bed.cpp.o -c /<>/sniffles-1.0.6+ds/src/tree/Intervall_bed.cpp [ 38%] Building CXX object src/CMakeFiles/sniffles.dir/sub/Breakpoint.cpp.o [ 42%] Building CXX object src/CMakeFiles/sniffles.dir/sub/Detect_Breakpoints.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/sub/Breakpoint.cpp.o -c /<>/sniffles-1.0.6+ds/src/sub/Breakpoint.cpp cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/sub/Detect_Breakpoints.cpp.o -c /<>/sniffles-1.0.6+ds/src/sub/Detect_Breakpoints.cpp [ 47%] Building CXX object src/CMakeFiles/sniffles.dir/tree/IntervallTree.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/tree/IntervallTree.cpp.o -c /<>/sniffles-1.0.6+ds/src/tree/IntervallTree.cpp [ 52%] Building CXX object src/CMakeFiles/sniffles.dir/tree/IntervallList.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/tree/IntervallList.cpp.o -c /<>/sniffles-1.0.6+ds/src/tree/IntervallList.cpp [ 57%] Building CXX object src/CMakeFiles/sniffles.dir/realign/SWCPU.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/realign/SWCPU.cpp.o -c /<>/sniffles-1.0.6+ds/src/realign/SWCPU.cpp [ 61%] Building CXX object src/CMakeFiles/sniffles.dir/realign/Realign.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/realign/Realign.cpp.o -c /<>/sniffles-1.0.6+ds/src/realign/Realign.cpp /<>/sniffles-1.0.6+ds/src/realign/SWCPU.cpp: In constructor ‘SWCPUCor::SWCPUCor(int)’: /<>/sniffles-1.0.6+ds/src/realign/SWCPU.cpp:30:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] fprintf(stderr, "Allocationg: %llu\n", maxLen * sizeof(MatrixElement)); ~~~~~~~~~~~~~~~~ ^ [ 66%] Building CXX object src/CMakeFiles/sniffles.dir/print/VCFPrinter.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/print/VCFPrinter.cpp.o -c /<>/sniffles-1.0.6+ds/src/print/VCFPrinter.cpp [ 71%] Building CXX object src/CMakeFiles/sniffles.dir/print/BedpePrinter.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/print/BedpePrinter.cpp.o -c /<>/sniffles-1.0.6+ds/src/print/BedpePrinter.cpp /<>/sniffles-1.0.6+ds/src/print/VCFPrinter.cpp: In member function ‘virtual void VCFPrinter::print_body(Breakpoint*&, BamTools::RefVector)’: /<>/sniffles-1.0.6+ds/src/print/VCFPrinter.cpp:204:41: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] fprintf(file, "%i", SV->get_length()); ~~~~~~~~~~~~~~~~^ [ 76%] Building CXX object src/CMakeFiles/sniffles.dir/print/IPrinter.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/print/IPrinter.cpp.o -c /<>/sniffles-1.0.6+ds/src/print/IPrinter.cpp /<>/sniffles-1.0.6+ds/src/print/BedpePrinter.cpp: In member function ‘virtual void BedpePrinter::print_body(Breakpoint*&, BamTools::RefVector)’: /<>/sniffles-1.0.6+ds/src/print/BedpePrinter.cpp:35:89: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] fprintf(file, "%i", IPrinter::calc_pos(SV->get_coordinates().start.max_pos, ref, chr)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ /<>/sniffles-1.0.6+ds/src/print/BedpePrinter.cpp:42:88: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] fprintf(file, "%i", IPrinter::calc_pos(SV->get_coordinates().stop.max_pos, ref, chr)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ /<>/sniffles-1.0.6+ds/src/print/BedpePrinter.cpp:70:41: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] fprintf(file, "%i", SV->get_length()); ~~~~~~~~~~~~~~~~^ [ 80%] Building CXX object src/CMakeFiles/sniffles.dir/tree/BinTree.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/tree/BinTree.cpp.o -c /<>/sniffles-1.0.6+ds/src/tree/BinTree.cpp [ 85%] Building CXX object src/CMakeFiles/sniffles.dir/print/NGMPrinter.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/print/NGMPrinter.cpp.o -c /<>/sniffles-1.0.6+ds/src/print/NGMPrinter.cpp [ 90%] Building CXX object src/CMakeFiles/sniffles.dir/plane-sweep/PlaneSweep_slim.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/plane-sweep/PlaneSweep_slim.cpp.o -c /<>/sniffles-1.0.6+ds/src/plane-sweep/PlaneSweep_slim.cpp [ 95%] Building CXX object src/CMakeFiles/sniffles.dir/cluster/Cluster_SVs.cpp.o cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -I/<>/sniffles-1.0.6+ds/src/../lib/bamtools-2.3.0/src -I/<>/sniffles-1.0.6+ds/src/../lib/tclap-1.2.1/include -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/sniffles.dir/cluster/Cluster_SVs.cpp.o -c /<>/sniffles-1.0.6+ds/src/cluster/Cluster_SVs.cpp /<>/sniffles-1.0.6+ds/src/cluster/Cluster_SVs.cpp: In member function ‘void Cluster_SVS::update_SVs(std::vector&)’: /<>/sniffles-1.0.6+ds/src/cluster/Cluster_SVs.cpp:87:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(move.c_str()); ~~~~~~^~~~~~~~~~~~~~ /<>/sniffles-1.0.6+ds/src/cluster/Cluster_SVs.cpp: In member function ‘void Cluster_SVS::update_SVs()’: /<>/sniffles-1.0.6+ds/src/cluster/Cluster_SVs.cpp:159:8: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(del.c_str()); ~~~~~~^~~~~~~~~~~~~ [100%] Linking CXX executable ../../bin/sniffles-core-1.0.6/sniffles cd /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/sniffles.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/sniffles-1.0.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/sniffles.dir/tree/Breakpoint_Tree.cpp.o CMakeFiles/sniffles.dir/Genotyper/Genotyper.cpp.o CMakeFiles/sniffles.dir/Alignment.cpp.o CMakeFiles/sniffles.dir/BamParser.cpp.o CMakeFiles/sniffles.dir/Sniffles.cpp.o CMakeFiles/sniffles.dir/Ignore_Regions.cpp.o CMakeFiles/sniffles.dir/tree/Intervall_bed.cpp.o CMakeFiles/sniffles.dir/sub/Detect_Breakpoints.cpp.o CMakeFiles/sniffles.dir/sub/Breakpoint.cpp.o CMakeFiles/sniffles.dir/tree/IntervallTree.cpp.o CMakeFiles/sniffles.dir/tree/IntervallList.cpp.o CMakeFiles/sniffles.dir/realign/SWCPU.cpp.o CMakeFiles/sniffles.dir/realign/Realign.cpp.o CMakeFiles/sniffles.dir/print/VCFPrinter.cpp.o CMakeFiles/sniffles.dir/print/BedpePrinter.cpp.o CMakeFiles/sniffles.dir/print/IPrinter.cpp.o CMakeFiles/sniffles.dir/tree/BinTree.cpp.o CMakeFiles/sniffles.dir/print/NGMPrinter.cpp.o CMakeFiles/sniffles.dir/plane-sweep/PlaneSweep_slim.cpp.o CMakeFiles/sniffles.dir/cluster/Cluster_SVs.cpp.o -o ../../bin/sniffles-core-1.0.6/sniffles -lbamtools -lz make[3]: Leaving directory '/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu' [100%] Built target sniffles make[2]: Leaving directory '/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/sniffles-1.0.6+ds/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing sniffles-dbgsym (in debian/.debhelper/sniffles/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing sniffles (in debian/sniffles); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/sniffles/dbgsym-root/DEBIAN/control, package sniffles-dbgsym, directory debian/.debhelper/sniffles/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package sniffles-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'sniffles-dbgsym' in 'debian/.debhelper/scratch-space/build-sniffles/sniffles-dbgsym_1.0.6+ds-1_amd64.deb'. pkgstripfiles: processing control file: debian/sniffles/DEBIAN/control, package sniffles, directory debian/sniffles pkgstripfiles: Running PNG optimization (using 4 cpus) for package sniffles ... pkgstripfiles: No PNG files. dpkg-deb: building package 'sniffles' in '../sniffles_1.0.6+ds-1_amd64.deb'. Renaming sniffles-dbgsym_1.0.6+ds-1_amd64.deb to sniffles-dbgsym_1.0.6+ds-1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../sniffles_1.0.6+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build sniffles-1.0.6+ds dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171110-1109 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ sniffles_1.0.6+ds-1_amd64.changes: ---------------------------------- Format: 1.8 Date: Fri, 10 Nov 2017 01:34:05 -0500 Source: sniffles Binary: sniffles Architecture: amd64 Version: 1.0.6+ds-1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Afif Elghraoui Description: sniffles - structural variation caller using third-generation sequencing Changes: sniffles (1.0.6+ds-1) unstable; urgency=medium . * New upstream version * Install upstream README * d/watch: remove unnecessary script invocations * Add d/upstream/metadata with preprint reference * Bump Standards-Version to 4.1.1 * Add support for the nodoc build profile Checksums-Sha1: b9fa9c0865370ce1f179229b84a711e28712f7b3 1880640 sniffles-dbgsym_1.0.6+ds-1_amd64.ddeb 0d68ef6104f7c978f99312045def8dc335d04c61 6769 sniffles_1.0.6+ds-1_amd64.buildinfo ddcac1f1baf4bf675ef1725bb6af20aa73fbf524 151924 sniffles_1.0.6+ds-1_amd64.deb Checksums-Sha256: 3ebaa111df3270a5acb39d03550cf941d769b67296bfa862f83842965db1a826 1880640 sniffles-dbgsym_1.0.6+ds-1_amd64.ddeb 7966d8f7bf51b38ccd91479ba5dc13f425956c561b4807ab9cfc4c4241f312dd 6769 sniffles_1.0.6+ds-1_amd64.buildinfo 2b26a357e3ac5dc78112ab33bb2236ce07b677b435a26ac60f61c452cab9dc0a 151924 sniffles_1.0.6+ds-1_amd64.deb Files: 2275818f8d55a0dfbf0e90feb00c12ba 1880640 debug optional sniffles-dbgsym_1.0.6+ds-1_amd64.ddeb d079115eadae416d1bbc4f2d1e58f82f 6769 science optional sniffles_1.0.6+ds-1_amd64.buildinfo 27547727566bf329a5f2378dbd90fb00 151924 science optional sniffles_1.0.6+ds-1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ sniffles_1.0.6+ds-1_amd64.deb ----------------------------- new debian package, version 2.0. size 151924 bytes: control archive=908 bytes. 792 bytes, 16 lines control 329 bytes, 5 lines md5sums Package: sniffles Version: 1.0.6+ds-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 467 Depends: libbamtools2.4.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Suggests: bwa Section: science Priority: optional Homepage: http://fritzsedlazeck.github.io/Sniffles Description: structural variation caller using third-generation sequencing Sniffles is a structural variation caller using third-generation sequencing data such as those from Pacific Biosciences or Oxford Nanopore platforms. It detects all types of SVs using evidence from split-read alignments, high-mismatch regions, and coverage analysis. drwxr-xr-x root/root 0 2017-11-10 06:34 ./ drwxr-xr-x root/root 0 2017-11-10 06:34 ./usr/ drwxr-xr-x root/root 0 2017-11-10 06:34 ./usr/bin/ -rwxr-xr-x root/root 460992 2017-11-10 06:34 ./usr/bin/sniffles drwxr-xr-x root/root 0 2017-11-10 06:34 ./usr/share/ drwxr-xr-x root/root 0 2017-11-10 06:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-11-10 06:34 ./usr/share/doc/sniffles/ -rw-r--r-- root/root 1570 2017-08-03 19:07 ./usr/share/doc/sniffles/README.md -rw-r--r-- root/root 554 2017-11-10 06:34 ./usr/share/doc/sniffles/changelog.Debian.gz -rw-r--r-- root/root 1457 2016-06-18 23:20 ./usr/share/doc/sniffles/copyright drwxr-xr-x root/root 0 2017-11-10 06:34 ./usr/share/man/ drwxr-xr-x root/root 0 2017-11-10 06:34 ./usr/share/man/man1/ -rw-r--r-- root/root 1059 2017-11-10 06:34 ./usr/share/man/man1/sniffles.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 30036 Build-Time: 28 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 13 Job: sniffles_1.0.6+ds-1.dsc Machine Architecture: amd64 Package: sniffles Package-Time: 42 Source-Version: 1.0.6+ds-1 Space: 30036 Status: successful Version: 1.0.6+ds-1 -------------------------------------------------------------------------------- Finished at 20171110-1109 Build needed 00:00:42, 30036k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13706080 Scanning for processes to kill in build PACKAGEBUILD-13706080 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13706080 Stopping target for build PACKAGEBUILD-13706080 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13706080 Removing build PACKAGEBUILD-13706080