https://launchpad.net/ubuntu/+source/snp-sites/2.4.0-1/+build/15018089 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-028 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:17:06 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 15 Jun 05:09:49 ntpdate[1881]: adjust time server 10.211.37.1 offset 0.067567 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15018089 /home/buildd/filecache-default/ba8da4cd8f224e5b98b45e770e42ce881cefd998 Creating target for build PACKAGEBUILD-15018089 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15018089 Starting target for build PACKAGEBUILD-15018089 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15018089 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15018089 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15018089 Updating target for build PACKAGEBUILD-15018089 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 Packages [972 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe arm64 Packages [8407 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5005 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 Packages [75.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [50.6 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 Packages [1030 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [495 kB] Fetched 17.0 MB in 6s (2727 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libprocps6 libreadline7 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv tar tzdata util-linux 96 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 46.8 MB of archives. After this operation, 1995 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-files arm64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo6 arm64 6.1+20180210-4ubuntu1 [73.9 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 debianutils arm64 4.8.6 [84.7 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 bash arm64 4.4.18-2ubuntu2 [545 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdutils arm64 1:2.32-0.1ubuntu1 [54.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 tar arm64 1.30+dfsg-2 [214 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 dpkg arm64 1.19.0.5ubuntu3 [1096 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 libext2fs2 arm64 1.44.2-1 [138 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fsprogs arm64 1.44.2-1 [346 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-bin arm64 6.1+20180210-4ubuntu1 [154 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libperl5.26 arm64 5.26.2-6 [3318 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl arm64 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl-base arm64 5.26.2-6 [1237 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 libuuid1 arm64 2.32-0.1ubuntu1 [18.4 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 libblkid1 arm64 2.32-0.1ubuntu1 [108 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfdisk1 arm64 2.32-0.1ubuntu1 [141 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw6 arm64 6.1+20180210-4ubuntu1 [107 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libselinux1 arm64 2.8-1 [57.7 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmount1 arm64 2.32-0.1ubuntu1 [118 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsmartcols1 arm64 2.32-0.1ubuntu1 [73.0 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 fdisk arm64 2.32-0.1ubuntu1 [95.9 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 util-linux arm64 2.32-0.1ubuntu1 [831 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-passwd arm64 3.5.45 [45.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgomp1 arm64 8.1.0-5ubuntu1 [69.6 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main arm64 libitm1 arm64 8.1.0-5ubuntu1 [24.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-8-base arm64 8.1.0-5ubuntu1 [18.5 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc1 arm64 1:8.1.0-5ubuntu1 [34.3 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblsan0 arm64 8.1.0-5ubuntu1 [120 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtsan0 arm64 8.1.0-5ubuntu1 [269 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcc1-0 arm64 8.1.0-5ubuntu1 [36.5 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main arm64 libatomic1 arm64 8.1.0-5ubuntu1 [9140 B] Get:34 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++6 arm64 8.1.0-5ubuntu1 [372 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 liblz4-1 arm64 1.8.2-1ubuntu1 [75.9 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libudev1 arm64 238-5ubuntu1 [47.3 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapt-pkg5.0 arm64 1.7.0~alpha0ubuntu1 [760 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 debconf all 1.5.67 [124 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 adduser all 3.117ubuntu1 [163 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgpg-error0 arm64 1.31-1 [48.7 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcrypt20 arm64 1.8.2-2ubuntu1 [326 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gpgv arm64 2.2.8-1ubuntu1 [166 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 apt arm64 1.7.0~alpha0ubuntu1 [1132 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit-common all 1:2.8.3-1ubuntu1 [4052 B] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcap-ng0 arm64 0.7.9-1 [10.3 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu1 [36.0 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libkmod2 arm64 25-1ubuntu1 [33.9 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 mount arm64 2.32-0.1ubuntu1 [95.5 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses6 arm64 6.1+20180210-4ubuntu1 [80.8 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libprocps7 arm64 2:3.3.15-2ubuntu1 [29.1 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 procps arm64 2:3.3.15-2ubuntu1 [217 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 systemd arm64 238-5ubuntu1 [2578 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsystemd0 arm64 238-5ubuntu1 [174 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 systemd-sysv arm64 238-5ubuntu1 [13.5 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcom-err2 arm64 1.44.2-1 [8672 B] Get:56 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsepol1 arm64 2.8-1 [207 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsemanage-common all 2.8-1 [7020 B] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsemanage1 arm64 2.8-1 [70.8 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main arm64 libss2 arm64 1.44.2-1 [9980 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgmp10 arm64 2:6.1.2+dfsg-3 [204 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libp11-kit0 arm64 0.23.12-2 [138 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtasn1-6 arm64 4.13-3 [32.1 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses5 arm64 6.1+20180210-4ubuntu1 [77.1 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw5 arm64 6.1+20180210-4ubuntu1 [96.3 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo5 arm64 6.1+20180210-4ubuntu1 [70.1 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 libprocps6 arm64 2:3.3.12-3ubuntu2 [28.2 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main arm64 libargon2-0 arm64 0~20161029-2 [17.9 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main arm64 readline-common all 7.0-5 [52.2 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main arm64 libreadline7 arm64 7.0-5 [106 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 libslang2 arm64 2.3.2-1ubuntu1 [372 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsqlite3-0 arm64 3.24.0-1 [434 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 tzdata all 2018e-1 [188 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-common arm64 2.30-21ubuntu1 [193 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils arm64 2.30-21ubuntu1 [3368 B] Get:75 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-aarch64-linux-gnu arm64 2.30-21ubuntu1 [2181 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbinutils arm64 2.30-21ubuntu1 [429 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasan4 arm64 7.3.0-21ubuntu1 [335 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main arm64 libubsan0 arm64 7.3.0-21ubuntu1 [117 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++-7 arm64 7.3.0-21ubuntu1 [6143 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7 arm64 7.3.0-21ubuntu1 [5995 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++-7-dev arm64 7.3.0-21ubuntu1 [1461 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc-7-dev arm64 7.3.0-21ubuntu1 [835 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp-7 arm64 7.3.0-21ubuntu1 [5328 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7-base arm64 7.3.0-21ubuntu1 [18.8 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp arm64 4:7.3.0-3ubuntu3 [27.6 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc arm64 4:7.3.0-3ubuntu3 [5232 B] Get:87 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++ arm64 4:7.3.0-3ubuntu3 [1580 B] Get:88 http://ftpmaster.internal/ubuntu cosmic/main arm64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main arm64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main arm64 build-essential arm64 12.5ubuntu2 [4736 B] Get:91 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fslibs arm64 1.44.2-1 [2700 B] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 pinentry-curses arm64 1.1.0-1build1 [32.3 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnpth0 arm64 1.5-4 [6856 B] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gpg arm64 2.2.8-1ubuntu1 [403 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gpgconf arm64 2.2.8-1ubuntu1 [106 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gpg-agent arm64 2.2.8-1ubuntu1 [190 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcomerr2 arm64 1.44.2-1 [2700 B] Get:98 http://ftpmaster.internal/ubuntu cosmic/main arm64 libusb-0.1-4 arm64 2:0.1.12-32 [15.4 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 linux-libc-dev arm64 4.15.0-24.26 [976 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main arm64 pkgbinarymangler all 139 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.8 MB in 2s (25.7 MB/s) (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_arm64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:arm64. (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking libtinfo6:arm64 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:arm64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_arm64.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_arm64.deb ... 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Setting up binutils-aarch64-linux-gnu (2.30-21ubuntu1) ... Setting up binutils (2.30-21ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-21ubuntu1) ... Setting up g++-7 (7.3.0-21ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15018089 arm64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15018089 --arch=arm64 --dist=cosmic-proposed --nolog snp-sites_2.4.0-1.dsc Initiating build PACKAGEBUILD-15018089 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:17:06 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-028.buildd +==============================================================================+ | snp-sites 2.4.0-1 (arm64) 15 Jun 2018 05:10 | +==============================================================================+ Package: snp-sites Version: 2.4.0-1 Source Version: 2.4.0-1 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/snp-sites-EaHnxR/snp-sites-2.4.0' with '<>' I: NOTICE: Log filtering will replace 'build/snp-sites-EaHnxR' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15018089/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- snp-sites_2.4.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ZGxQki/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ZGxQki/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ZGxQki/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ZGxQki/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ZGxQki/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ZGxQki/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (110 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libncursesw5 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ZGxQki/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12630 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor Filtered Build-Depends: debhelper (>= 11), zlib1g-dev, check, pkg-config, d-shlibs, asciidoctor dpkg-deb: building package 'sbuild-build-depends-snp-sites-dummy' in '/<>/resolver-sU5Emb/apt_archive/sbuild-build-depends-snp-sites-dummy.deb'. Ign:1 copy:/<>/resolver-sU5Emb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sU5Emb/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-sU5Emb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sU5Emb/apt_archive ./ Sources [246 B] Get:5 copy:/<>/resolver-sU5Emb/apt_archive ./ Packages [566 B] Fetched 2931 B in 0s (119 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install snp-sites build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libncursesw5 Use 'apt autoremove' to remove it. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils check d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libsubunit-dev libsubunit0 libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db pkg-config po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.5 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ri ruby-dev bundler Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils check d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libruby2.5 libsigsegv2 libsubunit-dev libsubunit0 libtimedate-perl libtool libxml2 libyaml-0-2 m4 man-db pkg-config po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.5 rubygems-integration sbuild-build-depends-snp-sites-dummy zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 79.4 MB of additional disk space will be used. Get:1 copy:/<>/resolver-sU5Emb/apt_archive ./ sbuild-build-depends-snp-sites-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpipeline1 arm64 1.5.0-1 [22.0 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 man-db arm64 2.8.3-2 [993 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic-mgc arm64 1:5.33-3 [192 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic1 arm64 1:5.33-3 [62.8 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 file arm64 1:5.33-3 [22.6 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 libelf1 arm64 0.170-0.4 [40.4 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 libglib2.0-0 arm64 2.56.1-2ubuntu1 [981 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main arm64 libicu60 arm64 60.2-6ubuntu1 [7987 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libxml2 arm64 2.9.4+dfsg1-7 [548 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main arm64 libyaml-0-2 arm64 0.1.7-2ubuntu3 [40.0 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext-base arm64 0.19.8.1-6build1 [46.5 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 rubygems-integration all 1.11 [4994 B] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 rake all 12.3.1-3 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 ruby-did-you-mean all 1.2.1-1 [9828 B] Get:19 http://ftpmaster.internal/ubuntu cosmic/main arm64 ruby-minitest all 5.10.3-1 [38.6 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main arm64 ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main arm64 ruby-power-assert all 1.1.1-1 [11.0 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 ruby-test-unit all 3.2.7-1 [61.4 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 libruby2.5 arm64 2.5.1-1ubuntu1 [2814 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 ruby2.5 arm64 2.5.1-1ubuntu1 [48.5 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 ruby arm64 1:2.5.1 [5712 B] Get:26 http://ftpmaster.internal/ubuntu cosmic/universe arm64 ruby-asciidoctor all 1.5.7.1-1 [157 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/universe arm64 asciidoctor arm64 1.5.7.1-1 [37.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main arm64 autoconf all 2.69-11 [322 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main arm64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main arm64 autopoint all 0.19.8.1-6build1 [412 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsubunit0 arm64 1.2.0-0ubuntu3 [6436 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsubunit-dev arm64 1.2.0-0ubuntu3 [5920 B] Get:36 http://ftpmaster.internal/ubuntu cosmic/universe arm64 check arm64 0.10.0-3build2 [163 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/universe arm64 d-shlibs all 0.82 [9880 B] Get:38 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtool all 2.4.6-2.1 [195 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-autoreconf all 19 [16.1 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main arm64 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfile-stripnondeterminism-perl all 0.041-2 [15.3 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-strip-nondeterminism all 0.041-2 [5192 B] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext arm64 0.19.8.1-6build1 [823 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 po-debconf all 1.0.20 [232 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 debhelper all 11.3.2ubuntu1 [883 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 pkg-config arm64 0.29.1-0ubuntu2 [42.8 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 1s (21.1 MB/s) Selecting previously unselected package libbsd0:arm64. (Reading database ... 12630 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_arm64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.0-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_arm64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.33-3_arm64.deb ... Unpacking libmagic-mgc (1:5.33-3) ... Selecting previously unselected package libmagic1:arm64. 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Setting up libbsd0:arm64 (0.9.1-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:arm64 (1:5.33-3) ... Setting up libcroco3:arm64 (0.6.12-2) ... Setting up libsubunit-dev:arm64 (1.2.0-0ubuntu3) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libyaml-0-2:arm64 (0.1.7-2ubuntu3) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up check:arm64 (0.10.0-3build2) ... Setting up rubygems-integration (1.11) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ruby-minitest (5.10.3-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.041-2) ... Setting up ruby-test-unit (3.2.7-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up po-debconf (1.0.20) ... Setting up libruby2.5:arm64 (2.5.1-1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up ruby2.5 (2.5.1-1ubuntu1) ... Setting up dh-strip-nondeterminism (0.041-2) ... Setting up ruby (1:2.5.1) ... Setting up rake (12.3.1-3) ... Setting up ruby-asciidoctor (1.5.7.1-1) ... Setting up asciidoctor (1.5.7.1-1) ... Setting up sbuild-build-depends-snp-sites-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic arm64 (aarch64) Toolchain package versions: binutils_2.30-21ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-21ubuntu1 gcc-7_7.3.0-21ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-21ubuntu1 libstdc++6_8.1.0-5ubuntu1 linux-libc-dev_4.15.0-24.26 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 asciidoctor_1.5.7.1-1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-21ubuntu1 binutils-aarch64-linux-gnu_2.30-21ubuntu1 binutils-common_2.30-21ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 check_0.10.0-3build2 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-21ubuntu1 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.041-2 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-21ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-21ubuntu1 gcc-7-base_7.3.0-21ubuntu1 gcc-8-base_8.1.0-5ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-21ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-5ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu1 libaudit1_1:2.8.3-1ubuntu1 libbinutils_2.30-21ubuntu1 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-5ubuntu1 libcom-err2_1.44.2-1 libcomerr2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libelf1_0.170-0.4 libext2fs2_1.44.2-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-2 libgcc-7-dev_7.3.0-21ubuntu1 libgcc1_1:8.1.0-5ubuntu1 libgcrypt20_1.8.2-2ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-5ubuntu1 libgpg-error0_1.31-1 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-5ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-5ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.5-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libruby2.5_2.5.1-1ubuntu1 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-21ubuntu1 libstdc++6_8.1.0-5ubuntu1 libsubunit-dev_1.2.0-0ubuntu3 libsubunit0_1.2.0-0ubuntu3 libsystemd0_238-5ubuntu1 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1 libtsan0_8.1.0-5ubuntu1 libubsan0_7.3.0-21ubuntu1 libudev1_238-5ubuntu1 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu1 libxml2_2.9.4+dfsg1-7 libyaml-0-2_0.1.7-2ubuntu3 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-24.26 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build1 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_139 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 rake_12.3.1-3 readline-common_7.0-5 ruby_1:2.5.1 ruby-asciidoctor_1.5.7.1-1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.10.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.7-1 ruby2.5_2.5.1-1ubuntu1 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-snp-sites-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-5ubuntu1 systemd-sysv_238-5ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Jun 14 22:12:42 2018 UTC gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09 gpgv: issuer "satta@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./snp-sites_2.4.0-1.dsc dpkg-source: info: extracting snp-sites in snp-sites-2.4.0 dpkg-source: info: unpacking snp-sites_2.4.0.orig.tar.gz dpkg-source: info: unpacking snp-sites_2.4.0-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15018089 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15018089 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15018089 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package snp-sites dpkg-buildpackage: info: source version 2.4.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build snp-sites-2.4.0 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:13: installing './compile' configure.ac:7: installing './config.guess' configure.ac:7: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for CHECK... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for floor in -lm... yes checking if zlib is wanted... yes checking for inflateEnd in -lz... yes checking for zlib.h... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snp_sites-main.o `test -f 'main.c' || echo './'`main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o libsnp-sites.la -rpath /usr/lib/aarch64-linux-gnu alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o -L/usr/lib -lz -lm -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1") libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so") libtool: link: ar cru .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsnp-sites.a libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o snp-sites snp_sites-main.o libsnp-sites.la -lpthread -lz -lm libtool: link: gcc --std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/snp-sites snp_sites-main.o -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lz -lm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make run-all-tests make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-snp-sites.o `test -f '../tests/check-snp-sites.c' || echo './'`../tests/check-snp-sites.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-check-vcf.o `test -f '../tests/check-vcf.c' || echo './'`../tests/check-vcf.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-helper-methods.o `test -f '../tests/helper-methods.c' || echo './'`../tests/helper-methods.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ../tests/run_all_tests-run-all-tests.o `test -f '../tests/run-all-tests.c' || echo './'`../tests/run-all-tests.c /bin/bash ../libtool --tag=CC --mode=link gcc -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib -o run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o libsnp-sites.la -lpthread -lcheck_pic -pthread -lrt -lm -lsubunit -lz -lm libtool: link: gcc -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/run-all-tests ../tests/run_all_tests-check-snp-sites.o ../tests/run_all_tests-check-vcf.o ../tests/run_all_tests-helper-methods.o ../tests/run_all_tests-run-all-tests.o -pthread -L/usr/lib ./.libs/libsnp-sites.so -lpthread -lcheck_pic -lrt -lsubunit -lz -lm -pthread make[3]: Leaving directory '/<>/src' make check-TESTS make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' PASS: run-all-tests ============================================================================ Testsuite summary for snp-sites 2.4.0 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; }) libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.la libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: install: ranlib /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/<>/debian/tmp/usr/bin' libtool: warning: 'libsnp-sites.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/snp-sites /<>/debian/tmp/usr/bin/snp-sites /bin/mkdir -p '/<>/debian/tmp/usr/include/snp-sites' /usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h kseq.h '/<>/debian/tmp/usr/include/snp-sites' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' ls -ARl .: total 1756 -rw-r--r-- 1 root root 397 Jan 29 16:18 .gitignore drwxr-xr-x 2 root root 4096 Jun 15 05:11 .pc -rw-r--r-- 1 root root 177 Jan 29 16:18 .travis.yml -rw-r--r-- 1 root root 109 Jan 29 16:18 AUTHORS -rw-r--r-- 1 root root 224 Jan 29 16:18 Dockerfile -rw-r--r-- 1 root root 1742 Jan 29 16:18 INSTALL -rw-r--r-- 1 root root 33565 Jan 29 16:18 LICENSE -rw-rw-r-- 1 root root 26204 Jun 15 05:11 Makefile -rw-r--r-- 1 root root 36 Jan 29 16:18 Makefile.am -rw-rw-r-- 1 root root 25607 Jun 15 05:11 Makefile.in -rw-r--r-- 1 root root 6158 Jan 29 16:18 README.md -rw-r--r-- 1 root root 6 Jan 29 16:18 VERSION -rw-rw-r-- 1 root root 52582 Jun 15 05:11 aclocal.m4 drwxr-xr-x 2 root root 4096 Jun 15 05:11 autom4te.cache -rwxr-xr-x 1 root root 7333 Jun 15 05:11 compile -rwxr-xr-x 1 root root 44283 Jun 15 05:11 config.guess -rw-rw-r-- 1 root root 2181 Jun 15 05:11 config.h -rw-rw-r-- 1 root root 1980 Jun 15 05:11 config.h.in -rw-rw-r-- 1 root root 40963 Jun 15 05:11 config.log -rwxrwxr-x 1 root root 69685 Jun 15 05:11 config.status -rwxr-xr-x 1 root root 36136 Jun 15 05:11 config.sub -rwxrwxr-x 1 root root 609847 Jun 15 05:11 configure -rw-r--r-- 1 root root 569 Jan 29 16:18 configure.ac drwxr-xr-x 9 root root 4096 Jun 15 05:11 debian -rwxr-xr-x 1 root root 23567 Jun 15 05:11 depcomp drwxr-xr-x 2 root root 4096 Jan 29 16:18 example_data -rwxr-xr-x 1 root root 15155 Jun 15 05:11 install-sh -rwxrwxr-x 1 root root 351243 Jun 15 05:11 libtool -rw-r--r-- 1 root root 330179 Jun 15 05:11 ltmain.sh drwxr-xr-x 2 root root 4096 Jun 15 05:11 m4 -rwxr-xr-x 1 root root 6872 Jun 15 05:11 missing drwxr-xr-x 2 root root 4096 Jan 29 16:18 paper_supporting_material -rw-r--r-- 1 root root 1971 Jan 29 16:18 snp-sites.txt drwxr-xr-x 3 root root 4096 Jun 15 05:11 src -rw-rw-r-- 1 root root 23 Jun 15 05:11 stamp-h1 -rwxr-xr-x 1 root root 4640 Jun 15 05:11 test-driver drwxr-xr-x 4 root root 4096 Jun 15 05:11 tests ./.pc: total 12 -rw-r--r-- 1 root root 15 Jun 15 05:11 .quilt_patches -rw-r--r-- 1 root root 7 Jun 15 05:11 .quilt_series -rw-r--r-- 1 root root 2 Jun 15 05:11 .version -rw-r--r-- 1 root root 0 Jun 15 05:11 applied-patches ./autom4te.cache: total 2064 -rw-rw-r-- 1 root root 612826 Jun 15 05:11 output.0 -rw-rw-r-- 1 root root 612826 Jun 15 05:11 output.1 -rw-rw-r-- 1 root root 612826 Jun 15 05:11 output.2 -rw-rw-r-- 1 root root 23978 Jun 15 05:11 requests -rw-rw-r-- 1 root root 100543 Jun 15 05:11 traces.0 -rw-rw-r-- 1 root root 39708 Jun 15 05:11 traces.1 -rw-rw-r-- 1 root root 98399 Jun 15 05:11 traces.2 ./debian: total 88 -rw-rw-r-- 1 root root 5308 Jun 15 05:11 autoreconf.after -rw-rw-r-- 1 root root 4020 Jun 15 05:11 autoreconf.before -rw-r--r-- 1 root root 3135 Jun 14 15:29 changelog -rw-r--r-- 1 root root 3 Jun 14 15:29 compat -rw-r--r-- 1 root root 2926 Jun 14 15:29 control -rw-r--r-- 1 root root 2334 Jun 14 15:29 copyright -rw-rw-r-- 1 root root 42 Jun 15 05:11 debhelper-build-stamp -rw-r--r-- 1 root root 10 Jun 14 15:29 docs drwxrwxr-x 2 root root 4096 Jun 15 05:11 libsnp-sites1 drwxrwxr-x 2 root root 4096 Jun 15 05:11 libsnp-sites1-dev -rw-r--r-- 1 root root 504 Jun 14 15:29 libsnp-sites1-dev.README.Debian -rwxr-xr-x 1 root root 635 Jun 14 15:29 rules drwxrwxr-x 2 root root 4096 Jun 15 05:11 snp-sites -rw-r--r-- 1 root root 378 Jun 14 15:29 snp-sites.README.Debian -rw-r--r-- 1 root root 18 Jun 14 15:29 snp-sites.install -rw-r--r-- 1 root root 12 Jun 14 15:29 snp-sites.manpages drwxr-xr-x 2 root root 4096 Jun 14 15:29 source drwxr-xr-x 2 root root 4096 Jun 14 15:29 tests drwxr-xr-x 3 root root 4096 Jun 15 05:11 tmp drwxr-xr-x 2 root root 4096 Jun 14 15:29 upstream -rw-r--r-- 1 root root 122 Jun 14 15:29 watch ./debian/libsnp-sites1: total 0 ./debian/libsnp-sites1-dev: total 0 ./debian/snp-sites: total 0 ./debian/source: total 8 -rwxr-xr-x 1 root root 12 Jun 14 15:29 format -rwxr-xr-x 1 root root 57 Jun 14 15:29 include-binaries ./debian/tests: total 12 -rw-r--r-- 1 root root 3447 Jun 14 15:29 alignment_file_one_line_per_sequence.aln.gz -rw-r--r-- 1 root root 747 Jun 14 15:29 build-lib -rw-r--r-- 1 root root 99 Jun 14 15:29 control ./debian/tmp: total 4 drwxrwxr-x 5 root root 4096 Jun 15 05:11 usr ./debian/tmp/usr: total 12 drwxrwxr-x 2 root root 4096 Jun 15 05:11 bin drwxrwxr-x 3 root root 4096 Jun 15 05:11 include drwxrwxr-x 3 root root 4096 Jun 15 05:11 lib ./debian/tmp/usr/bin: total 28 -rwxr-xr-x 1 root root 26856 Jun 15 05:11 snp-sites ./debian/tmp/usr/include: total 4 drwxrwxr-x 2 root root 4096 Jun 15 05:11 snp-sites ./debian/tmp/usr/include/snp-sites: total 32 -rw-r--r-- 1 root root 1365 Jun 15 05:11 alignment-file.h -rw-r--r-- 1 root root 1145 Jun 15 05:11 fasta-of-snp-sites.h -rw-r--r-- 1 root root 8809 Jun 15 05:11 kseq.h -rw-r--r-- 1 root root 1149 Jun 15 05:11 phylib-of-snp-sites.h -rw-r--r-- 1 root root 2050 Jun 15 05:11 snp-sites.h -rw-r--r-- 1 root root 2005 Jun 15 05:11 vcf.h ./debian/tmp/usr/lib: total 4 drwxrwxr-x 2 root root 4096 Jun 15 05:11 aarch64-linux-gnu ./debian/tmp/usr/lib/aarch64-linux-gnu: total 196 -rw-r--r-- 1 root root 122100 Jun 15 05:11 libsnp-sites.a -rwxr-xr-x 1 root root 999 Jun 15 05:11 libsnp-sites.la lrwxrwxrwx 1 root root 21 Jun 15 05:11 libsnp-sites.so -> libsnp-sites.so.1.0.0 lrwxrwxrwx 1 root root 21 Jun 15 05:11 libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rwxr-xr-x 1 root root 73696 Jun 15 05:11 libsnp-sites.so.1.0.0 ./debian/upstream: total 8 -rwxr-xr-x 1 root root 334 Jun 14 15:29 edam -rw-r--r-- 1 root root 724 Jun 14 15:29 metadata ./example_data: total 15164 -rw-r--r-- 1 root root 768 Jan 29 16:18 Readme.md -rw-r--r-- 1 root root 15521067 Jan 29 16:18 salmonella_serovars_core_genes.aln.gz ./m4: total 344 -rw-r--r-- 1 root root 306297 Jun 15 05:11 libtool.m4 -rw-r--r-- 1 root root 14514 Jun 15 05:11 ltoptions.m4 -rw-r--r-- 1 root root 4384 Jun 15 05:11 ltsugar.m4 -rw-r--r-- 1 root root 699 Jun 15 05:11 ltversion.m4 -rw-r--r-- 1 root root 6140 Jun 15 05:11 lt~obsolete.m4 -rw-r--r-- 1 root root 5416 Jan 29 16:18 m4_ax_check_zlib.m4 -rw-r--r-- 1 root root 0 Jan 29 16:18 test ./paper_supporting_material: total 4 -rwxr-xr-x 1 root root 2658 Jan 29 16:18 snp_sites_create_simulated_data ./src: total 392 drwxrwxr-x 2 root root 4096 Jun 15 05:11 .libs -rw-rw-r-- 1 root root 49731 Jun 15 05:11 Makefile -rw-r--r-- 1 root root 820 Jan 29 16:18 Makefile.am -rw-rw-r-- 1 root root 51839 Jun 15 05:11 Makefile.in -rw-r--r-- 1 root root 5399 Jan 29 16:18 alignment-file.c -rw-r--r-- 1 root root 1365 Jan 29 16:18 alignment-file.h -rw-rw-r-- 1 root root 311 Jun 15 05:11 alignment-file.lo -rw-rw-r-- 1 root root 36888 Jun 15 05:11 alignment-file.o -rw-r--r-- 1 root root 1978 Jan 29 16:18 fasta-of-snp-sites.c -rw-r--r-- 1 root root 1145 Jan 29 16:18 fasta-of-snp-sites.h -rw-rw-r-- 1 root root 323 Jun 15 05:11 fasta-of-snp-sites.lo -rw-rw-r-- 1 root root 11456 Jun 15 05:11 fasta-of-snp-sites.o -rw-r--r-- 1 root root 8809 Jan 29 16:18 kseq.h -rw-rw-r-- 1 root root 998 Jun 15 05:11 libsnp-sites.la -rw-r--r-- 1 root root 4744 Jan 29 16:18 main.c -rw-r--r-- 1 root root 2277 Jan 29 16:18 phylib-of-snp-sites.c -rw-r--r-- 1 root root 1149 Jan 29 16:18 phylib-of-snp-sites.h -rw-rw-r-- 1 root root 326 Jun 15 05:11 phylib-of-snp-sites.lo -rw-rw-r-- 1 root root 12200 Jun 15 05:11 phylib-of-snp-sites.o -rwxrwxr-x 1 root root 6330 Jun 15 05:11 run-all-tests -rw-rw-r-- 1 root root 340 Jun 15 05:11 run-all-tests.log -rw-rw-r-- 1 root root 82 Jun 15 05:11 run-all-tests.trs -rwxrwxr-x 1 root root 6290 Jun 15 05:11 snp-sites -rw-r--r-- 1 root root 6305 Jan 29 16:18 snp-sites.c -rw-r--r-- 1 root root 2050 Jan 29 16:18 snp-sites.h -rw-rw-r-- 1 root root 296 Jun 15 05:11 snp-sites.lo -rw-rw-r-- 1 root root 24064 Jun 15 05:11 snp-sites.o -rw-rw-r-- 1 root root 30136 Jun 15 05:11 snp_sites-main.o -rw-rw-r-- 1 root root 227 Jun 15 05:11 test-suite.log -rw-r--r-- 1 root root 6713 Jan 29 16:18 vcf.c -rw-r--r-- 1 root root 2005 Jan 29 16:18 vcf.h -rw-rw-r-- 1 root root 278 Jun 15 05:11 vcf.lo -rw-rw-r-- 1 root root 36216 Jun 15 05:11 vcf.o ./src/.libs: total 444 -rw-rw-r-- 1 root root 36560 Jun 15 05:11 alignment-file.o -rw-rw-r-- 1 root root 11464 Jun 15 05:11 fasta-of-snp-sites.o -rw-rw-r-- 1 root root 122100 Jun 15 05:11 libsnp-sites.a lrwxrwxrwx 1 root root 18 Jun 15 05:11 libsnp-sites.la -> ../libsnp-sites.la -rw-rw-r-- 1 root root 999 Jun 15 05:11 libsnp-sites.lai lrwxrwxrwx 1 root root 21 Jun 15 05:11 libsnp-sites.so -> libsnp-sites.so.1.0.0 lrwxrwxrwx 1 root root 21 Jun 15 05:11 libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rwxrwxr-x 1 root root 73696 Jun 15 05:11 libsnp-sites.so.1.0.0 -rw-rw-r-- 1 root root 12208 Jun 15 05:11 phylib-of-snp-sites.o -rwxrwxr-x 1 root root 102384 Jun 15 05:11 run-all-tests -rwxrwxr-x 1 root root 26856 Jun 15 05:11 snp-sites -rw-rw-r-- 1 root root 24072 Jun 15 05:11 snp-sites.o -rw-rw-r-- 1 root root 35776 Jun 15 05:11 vcf.o ./tests: total 176 drwxrwxr-x 2 root root 4096 Jun 15 05:11 .deps -rw-rw-r-- 1 root root 0 Jun 15 05:11 .dirstamp -rw-r--r-- 1 root root 15128 Jan 29 16:18 check-snp-sites.c -rw-r--r-- 1 root root 938 Jan 29 16:18 check-snp-sites.h -rw-r--r-- 1 root root 3112 Jan 29 16:18 check-vcf.c -rw-r--r-- 1 root root 1090 Jan 29 16:18 check-vcf.h drwxr-xr-x 2 root root 4096 Jan 29 16:18 data -rw-r--r-- 1 root root 2190 Jan 29 16:18 helper-methods.c -rw-r--r-- 1 root root 985 Jan 29 16:18 helper-methods.h -rw-r--r-- 1 root root 1409 Jan 29 16:18 run-all-tests.c -rw-rw-r-- 1 root root 78368 Jun 15 05:11 run_all_tests-check-snp-sites.o -rw-rw-r-- 1 root root 22736 Jun 15 05:11 run_all_tests-check-vcf.o -rw-rw-r-- 1 root root 11416 Jun 15 05:11 run_all_tests-helper-methods.o -rw-rw-r-- 1 root root 9440 Jun 15 05:11 run_all_tests-run-all-tests.o ./tests/.deps: total 0 -rw-rw-r-- 1 root root 0 Jun 15 05:11 .dirstamp ./tests/data: total 724 -rw-r--r-- 1 root root 219249 Jan 29 16:18 alignment_file_multiple_lines_per_sequence.aln -rw-r--r-- 1 root root 219240 Jan 29 16:18 alignment_file_one_line_per_sequence.aln -rw-r--r-- 1 root root 3447 Jan 29 16:18 alignment_file_one_line_per_sequence.aln.gz -rw-r--r-- 1 root root 1683 Jan 29 16:18 alignment_file_one_line_per_sequence.aln.phylip -rw-r--r-- 1 root root 1786 Jan 29 16:18 alignment_file_one_line_per_sequence.aln.snp_sites.aln -rw-r--r-- 1 root root 2388 Jan 29 16:18 alignment_file_one_line_per_sequence.aln.vcf -rw-r--r-- 1 root root 1715 Jan 29 16:18 alignment_file_one_line_per_sequence_reference.aln.phylip -rw-r--r-- 1 root root 1819 Jan 29 16:18 alignment_file_one_line_per_sequence_reference.snp_sites.aln -rw-r--r-- 1 root root 219241 Jan 29 16:18 alignment_file_with_n.aln -rw-r--r-- 1 root root 1683 Jan 29 16:18 alignment_file_with_n.aln.phylip -rw-r--r-- 1 root root 1786 Jan 29 16:18 alignment_file_with_n.aln.snp_sites.aln -rw-r--r-- 1 root root 2388 Jan 29 16:18 alignment_file_with_n.aln.vcf -rw-r--r-- 1 root root 53 Jan 29 16:18 pure_mode_alignment.aln -rw-r--r-- 1 root root 37 Jan 29 16:18 pure_mode_alignment.aln.phylip -rw-r--r-- 1 root root 36 Jan 29 16:18 pure_mode_alignment.aln.snp_sites.aln -rw-r--r-- 1 root root 227 Jan 29 16:18 pure_mode_alignment.aln.vcf -rw-r--r-- 1 root root 45 Jan 29 16:18 pure_mode_monomorphic_alignment.aln -rw-r--r-- 1 root root 40 Jan 29 16:18 pure_mode_monomorphic_alignment.aln.phylip -rw-r--r-- 1 root root 39 Jan 29 16:18 pure_mode_monomorphic_alignment.aln.snp_sites.aln -rw-r--r-- 1 root root 252 Jan 29 16:18 pure_mode_monomorphic_alignment.aln.vcf -rw-r--r-- 1 root root 96 Jan 29 16:18 small_alignment.aln -rw-r--r-- 1 root root 100 Jan 29 16:18 uneven_alignment.aln dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \ debian/tmp/usr/lib/*/libsnp-sites.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu mv /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/aarch64-linux-gnu PKGDEV=libsnp-sites1-dev PKGSHL=libsnp-sites1 install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man asciidoctor -a docdate='' -b manpage /<>/snp-sites.txt mv /<>/snp-sites.1 /<>/debian/man dh_installman -- make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: package libsnp-sites1-dev: unused substitution variable ${devlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 pkgstriptranslations: processing snp-sites (in debian/snp-sites); do_strip: , oemstrip: pkgstriptranslations: processing libsnp-sites1 (in debian/libsnp-sites1); do_strip: , oemstrip: pkgstriptranslations: processing libsnp-sites1-dev (in debian/libsnp-sites1-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/snp-sites/DEBIAN/control, package snp-sites, directory debian/snp-sites pkgstripfiles: processing control file: debian/libsnp-sites1/DEBIAN/control, package libsnp-sites1, directory debian/libsnp-sites1 INFO: pkgstripfiles: waiting for lock (libsnp-sites1) ... Searching for duplicated docs in dependency libsnp-sites1... symlinking changelog.Debian.gz in snp-sites to file in libsnp-sites1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package snp-sites ... pkgstripfiles: No PNG files. dpkg-deb: building package 'snp-sites' in '../snp-sites_2.4.0-1_arm64.deb'. pkgstripfiles: Truncating usr/share/doc/libsnp-sites1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.4.0-1_arm64.deb'. INFO: pkgstriptranslations version 139 pkgstriptranslations: processing snp-sites-dbgsym (in debian/.debhelper/snp-sites/dbgsym-root); do_strip: , oemstrip: INFO: pkgstriptranslations version 139 pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstriptranslations: processing libsnp-sites1-dbgsym (in debian/.debhelper/libsnp-sites1/dbgsym-root); do_strip: , oemstrip: pkgstripfiles: processing control file: debian/.debhelper/snp-sites/dbgsym-root/DEBIAN/control, package snp-sites-dbgsym, directory debian/.debhelper/snp-sites/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package snp-sites-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'snp-sites-dbgsym' in 'debian/.debhelper/scratch-space/build-snp-sites/snp-sites-dbgsym_2.4.0-1_arm64.deb'. Renaming snp-sites-dbgsym_2.4.0-1_arm64.deb to snp-sites-dbgsym_2.4.0-1_arm64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libsnp-sites1/dbgsym-root/DEBIAN/control, package libsnp-sites1-dbgsym, directory debian/.debhelper/libsnp-sites1/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1-dbgsym' in 'debian/.debhelper/scratch-space/build-libsnp-sites1/libsnp-sites1-dbgsym_2.4.0-1_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " Renaming libsnp-sites1-dbgsym_2.4.0-1_arm64.deb to libsnp-sites1-dbgsym_2.4.0-1_arm64.ddeb pkgstripfiles: processing control file: debian/libsnp-sites1-dev/DEBIAN/control, package libsnp-sites1-dev, directory debian/libsnp-sites1-dev Searching for duplicated docs in dependency libsnp-sites1... symlinking changelog.Debian.gz in libsnp-sites1-dev to file in libsnp-sites1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libsnp-sites1-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.4.0-1_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../snp-sites_2.4.0-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build snp-sites-2.4.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180615-0511 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snp-sites_2.4.0-1_arm64.changes: -------------------------------- Format: 1.8 Date: Thu, 14 Jun 2018 17:29:53 +0200 Source: snp-sites Binary: snp-sites libsnp-sites1 libsnp-sites1-dev Architecture: arm64 Version: 2.4.0-1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: libsnp-sites1 - Shared libraries of the package snp-sites libsnp-sites1-dev - Static libraries and header files for the package snp-sites snp-sites - Binary code for the package snp-sites Changes: snp-sites (2.4.0-1) unstable; urgency=medium . * New upstream version. * Adjust watchfile to allow 'v' in version tags. * Update upstream metadata (thanks Steffen Moeller). * Remove obsolete autotools Build-Depends. * Use debhelper 11. * Bump Standards-Version. * Use secure copyright format URL. Checksums-Sha1: dda79621c91c5936f23ad96b37f351671cf16bad 18976 libsnp-sites1-dbgsym_2.4.0-1_arm64.ddeb 3072ea6c29e131b36fc64f804814796d78add3f6 12936 libsnp-sites1-dev_2.4.0-1_arm64.deb 215d343705dda14febc9b304efbff2046f0b5042 10112 libsnp-sites1_2.4.0-1_arm64.deb b6d9acde96ecec173a0c39d47e39c27275be466f 6172 snp-sites-dbgsym_2.4.0-1_arm64.ddeb bb1f48341b7d62dd3443bd2d2c096e867c226a76 6842 snp-sites_2.4.0-1_arm64.buildinfo 33ed015e46e282511a832c8fc194ec09153f3fef 9976 snp-sites_2.4.0-1_arm64.deb Checksums-Sha256: 0671d8f3ca9de25640d566a7d1a0794130e71d02b587af63dbdc7e8cb32243aa 18976 libsnp-sites1-dbgsym_2.4.0-1_arm64.ddeb 6b81bd71c0d5475254fef7bf4040ba44d566c82888b1cd5a22ffc50781c2566c 12936 libsnp-sites1-dev_2.4.0-1_arm64.deb 3051003193da38782779067e527e39bcf18366ddac3afd4e7feed0f45572b024 10112 libsnp-sites1_2.4.0-1_arm64.deb 15ab6b6cbf6c441f543ae86e2e99b39c789c4b8aa3ed45f51d31ff0d4f0f4616 6172 snp-sites-dbgsym_2.4.0-1_arm64.ddeb b510960e42b31c462b63fb4f858199a655fd7f798e8b3a88db5aab54738900de 6842 snp-sites_2.4.0-1_arm64.buildinfo 1e075c2f5af0baf7557111626279a49dc6b3cd2e818dae67e94d82adcab739f1 9976 snp-sites_2.4.0-1_arm64.deb Files: eb8ca11b300b860a996a99ca7a57c2ee 18976 debug optional libsnp-sites1-dbgsym_2.4.0-1_arm64.ddeb 847d294b52e81da49569c996b7ac75fe 12936 libdevel optional libsnp-sites1-dev_2.4.0-1_arm64.deb c4415607b205aff78bd73521926e3fb6 10112 libs optional libsnp-sites1_2.4.0-1_arm64.deb 456f93aa1afa7b0e86b1358b86e82221 6172 debug optional snp-sites-dbgsym_2.4.0-1_arm64.ddeb 4e80f8a151fc340989b1afbf5b26889c 6842 science optional snp-sites_2.4.0-1_arm64.buildinfo 339a38821399d73a7b340816db22fdb5 9976 science optional snp-sites_2.4.0-1_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsnp-sites1-dev_2.4.0-1_arm64.deb ----------------------------------- new debian package, version 2.0. size 12936 bytes: control archive=1156 bytes. 1033 bytes, 25 lines control 652 bytes, 9 lines md5sums Package: libsnp-sites1-dev Source: snp-sites Version: 2.4.0-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 62 Depends: libsnp-sites1 (= 2.4.0-1) Conflicts: libsnp-sites-dev Provides: libsnp-sites-dev Section: libdevel Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Static libraries and header files for the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the development files to include snp-sites into your own code. The library enables Python developers to make snp-sites function calls (Python bindings) through the Boost Python Library. drwxr-xr-x root/root 0 2018-06-14 15:29 ./ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/include/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/include/snp-sites/ -rw-r--r-- root/root 1365 2018-06-14 15:29 ./usr/include/snp-sites/alignment-file.h -rw-r--r-- root/root 1145 2018-06-14 15:29 ./usr/include/snp-sites/fasta-of-snp-sites.h -rw-r--r-- root/root 8809 2018-06-14 15:29 ./usr/include/snp-sites/kseq.h -rw-r--r-- root/root 1149 2018-06-14 15:29 ./usr/include/snp-sites/phylib-of-snp-sites.h -rw-r--r-- root/root 2050 2018-06-14 15:29 ./usr/include/snp-sites/snp-sites.h -rw-r--r-- root/root 2005 2018-06-14 15:29 ./usr/include/snp-sites/vcf.h drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/lib/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 26116 2018-06-14 15:29 ./usr/lib/aarch64-linux-gnu/libsnp-sites.a lrwxrwxrwx root/root 0 2018-06-14 15:29 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so -> libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/doc/libsnp-sites1-dev/ -rw-r--r-- root/root 504 2018-06-14 15:29 ./usr/share/doc/libsnp-sites1-dev/README.Debian lrwxrwxrwx root/root 0 2018-06-14 15:29 ./usr/share/doc/libsnp-sites1-dev/changelog.Debian.gz -> ../libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-06-14 15:29 ./usr/share/doc/libsnp-sites1-dev/copyright libsnp-sites1_2.4.0-1_arm64.deb ------------------------------- new debian package, version 2.0. size 10112 bytes: control archive=988 bytes. 812 bytes, 20 lines control 236 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libsnp-sites1 Source: snp-sites Version: 2.4.0-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: libc6 (>= 2.17), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Shared libraries of the package snp-sites Snp-sites finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . This package contains the dynamic library uses by snp-sites. drwxr-xr-x root/root 0 2018-06-14 15:29 ./ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/lib/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2018-06-14 15:29 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so.1 -> libsnp-sites.so.1.0.0 -rw-r--r-- root/root 18120 2018-06-14 15:29 ./usr/lib/aarch64-linux-gnu/libsnp-sites.so.1.0.0 drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/doc/libsnp-sites1/ -rw-r--r-- root/root 714 2018-06-14 15:29 ./usr/share/doc/libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-06-14 15:29 ./usr/share/doc/libsnp-sites1/copyright snp-sites_2.4.0-1_arm64.deb --------------------------- new debian package, version 2.0. size 9976 bytes: control archive=1152 bytes. 1218 bytes, 25 lines control 331 bytes, 5 lines md5sums Package: snp-sites Version: 2.4.0-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: libc6 (>= 2.17), libsnp-sites1 Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/snp-sites Description: Binary code for the package snp-sites This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles. drwxr-xr-x root/root 0 2018-06-14 15:29 ./ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/bin/ -rwxr-xr-x root/root 14184 2018-06-14 15:29 ./usr/bin/snp-sites drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/doc/snp-sites/ -rw-r--r-- root/root 378 2018-06-14 15:29 ./usr/share/doc/snp-sites/README.Debian -rw-r--r-- root/root 2449 2018-01-29 16:18 ./usr/share/doc/snp-sites/README.md.gz lrwxrwxrwx root/root 0 2018-06-14 15:29 ./usr/share/doc/snp-sites/changelog.Debian.gz -> ../libsnp-sites1/changelog.Debian.gz -rw-r--r-- root/root 2334 2018-06-14 15:29 ./usr/share/doc/snp-sites/copyright drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/man/ drwxr-xr-x root/root 0 2018-06-14 15:29 ./usr/share/man/man1/ -rw-r--r-- root/root 1396 2018-06-14 15:29 ./usr/share/man/man1/snp-sites.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 21812 Build-Time: 52 Distribution: cosmic-proposed Host Architecture: arm64 Install-Time: 21 Job: snp-sites_2.4.0-1.dsc Machine Architecture: arm64 Package: snp-sites Package-Time: 75 Source-Version: 2.4.0-1 Space: 21812 Status: successful Version: 2.4.0-1 -------------------------------------------------------------------------------- Finished at 20180615-0511 Build needed 00:01:15, 21812k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15018089 Scanning for processes to kill in build PACKAGEBUILD-15018089