https://launchpad.net/ubuntu/+source/spades/3.15.4+dfsg-2/+build/23744772 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-034 5.4.0-110-generic #124-Ubuntu SMP Thu Apr 14 13:14:54 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_212~550~ubuntu20.04.1 python3-lpbuildd_212~550~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 20 May 04:34:52 ntpdate[1804]: adjust time server 10.211.37.1 offset -0.001206 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744772 --image-type chroot /home/buildd/filecache-default/e7574466887b0df41a9ed814007609e88584b937 Creating target for build PACKAGEBUILD-23744772 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744772 Starting target for build PACKAGEBUILD-23744772 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744772 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23744772 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744772 Updating target for build PACKAGEBUILD-23744772 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf Packages [1323 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe armhf Packages [13.7 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5705 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf Packages [151 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [62.3 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe armhf Packages [486 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [218 kB] Fetched 22.7 MB in 8s (3019 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: util-linux-extra The following packages will be upgraded: adduser apt binutils binutils-arm-linux-gnueabihf binutils-common bsdutils dash dpkg dpkg-dev gcc-12-base libapt-pkg6.0 libatomic1 libbinutils libblkid1 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-s1 libgomp1 libgpg-error0 libip4tc2 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libreadline8 libsmartcols1 libsqlite3-0 libssl3 libstdc++6 libtinfo6 libubsan1 libuuid1 libzstd1 linux-libc-dev mount ncurses-base ncurses-bin openssl pinentry-curses readline-common util-linux xz-utils 45 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After this operation, 792 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main armhf bsdutils armhf 1:2.38-4ubuntu1 [86.3 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main armhf libzstd1 armhf 1.5.2+dfsg-1 [243 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main armhf libatomic1 armhf 12.1.0-2ubuntu1 [7610 B] Get:4 http://ftpmaster.internal/ubuntu kinetic/main armhf libubsan1 armhf 12.1.0-2ubuntu1 [949 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf libgomp1 armhf 12.1.0-2ubuntu1 [109 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-12-base armhf 12.1.0-2ubuntu1 [18.8 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcc-s1 armhf 12.1.0-2ubuntu1 [41.3 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main armhf libcc1-0 armhf 12.1.0-2ubuntu1 [38.9 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main armhf libstdc++6 armhf 12.1.0-2ubuntu1 [602 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf liblzma5 armhf 5.2.5-2.1 [86.4 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libapt-pkg6.0 armhf 2.5.0 [894 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf dpkg armhf 1.21.7ubuntu3 [1302 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-8 [80.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf ncurses-bin armhf 6.3+20220423-2 [174 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main armhf libblkid1 armhf 2.38-4ubuntu1 [137 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main armhf libmount1 armhf 2.38-4ubuntu1 [153 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main armhf libsmartcols1 armhf 2.38-4ubuntu1 [94.9 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main armhf util-linux-extra armhf 2.38-4ubuntu1 [98.7 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main armhf util-linux armhf 2.38-4ubuntu1 [1157 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf ncurses-base all 6.3+20220423-2 [21.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf adduser all 3.121ubuntu1 [150 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf apt armhf 2.5.0 [1367 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main armhf mount armhf 2.38-4ubuntu1 [126 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libgpg-error0 armhf 1.45-2 [61.2 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libncursesw6 armhf 6.3+20220423-2 [116 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libncurses6 armhf 6.3+20220423-2 [88.3 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libtinfo6 armhf 6.3+20220423-2 [83.6 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main armhf libuuid1 armhf 2.38-4ubuntu1 [22.8 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main armhf libip4tc2 armhf 1.8.7-1ubuntu6 [17.5 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf readline-common all 8.1.2-1.2 [53.6 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libreadline8 armhf 8.1.2-1.2 [128 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libsqlite3-0 armhf 3.38.5-1 [548 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libssl3 armhf 3.0.3-0ubuntu1 [1554 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf openssl armhf 3.0.3-0ubuntu1 [1145 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libpng16-16 armhf 1.6.37-5 [167 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf xz-utils armhf 5.2.5-2.1 [83.6 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libctf-nobfd0 armhf 2.38-4ubuntu1 [93.5 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libctf0 armhf 2.38-4ubuntu1 [93.2 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.38-4ubuntu1 [3033 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libbinutils armhf 2.38-4ubuntu1 [489 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils armhf 2.38-4ubuntu1 [3172 B] Get:42 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils-common armhf 2.38-4ubuntu1 [221 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf dpkg-dev all 1.21.7ubuntu3 [1070 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libdpkg-perl all 1.21.7ubuntu3 [236 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf linux-libc-dev armhf 5.15.0-28.29 [1308 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf pinentry-curses armhf 1.2.0-1ubuntu1 [36.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.6 MB in 1s (23.6 MB/s) (Reading database ... 13176 files and directories currently installed.) 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Setting up libbinutils:armhf (2.38-4ubuntu1) ... Setting up openssl (3.0.3-0ubuntu1) ... Setting up readline-common (8.1.2-1.2) ... Setting up libcc1-0:armhf (12.1.0-2ubuntu1) ... Setting up libctf0:armhf (2.38-4ubuntu1) ... Setting up pinentry-curses (1.2.0-1ubuntu1) ... Setting up libreadline8:armhf (8.1.2-1.2) ... Setting up binutils-arm-linux-gnueabihf (2.38-4ubuntu1) ... Setting up binutils (2.38-4ubuntu1) ... Setting up dpkg-dev (1.21.7ubuntu3) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for debianutils (5.7-0.2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23744772 armhf kinetic-proposed -c chroot:build-PACKAGEBUILD-23744772 --arch=armhf --dist=kinetic-proposed --nolog spades_3.15.4+dfsg-2.dsc Initiating build PACKAGEBUILD-23744772 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-110-generic #124-Ubuntu SMP Thu Apr 14 13:14:54 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-034.buildd +==============================================================================+ | spades 3.15.4+dfsg-2 (armhf) Fri, 20 May 2022 04:35:28 +0000 | +==============================================================================+ Package: spades Version: 3.15.4+dfsg-2 Source Version: 3.15.4+dfsg-2 Distribution: kinetic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23744772/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/spades-mufpB4/resolver-hqEzID' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- spades_3.15.4+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/spades-mufpB4/spades-3.15.4+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/spades-mufpB4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, cmake, python3-all, zlib1g-dev, libbz2-dev, libbam-dev, libbamtools-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, llvm-dev, python3-yaml, python3-joblib, asciidoctor, bwa, libbwa-dev, lynx, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, cmake, python3-all, zlib1g-dev, libbz2-dev, libbam-dev, libbamtools-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, llvm-dev, python3-yaml, python3-joblib, asciidoctor, bwa, libbwa-dev, lynx, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [466 B] Get:5 copy:/<>/apt_archive ./ Packages [548 B] Fetched 1971 B in 0s (33.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libbam-dev libbamtools-dev libbamtools2.5.1 libbrotli1 libbsd0 libbwa-dev libbz2-dev libclang-cpp14 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libedit2 libelf1 libexpat1 libffi-dev libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev libicu71 libjsoncpp25 libldap-2.5-0 libllvm14 liblzma-dev libmagic-mgc libmagic1 libmd0 libmpdec3 libncurses-dev libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpfm4 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librhash0 librtmp1 libruby3.0 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssw-dev libssw0 libsub-override-perl libtinfo-dev libtool libuchardet0 libuv1 libxml2 libxml2-dev libyaml-0-2 libz3-4 libz3-dev llvm llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools llvm-dev llvm-runtime lynx lynx-common m4 man-db media-types po-debconf python3 python3-all python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-pygments python3-yaml python3.10 python3.10-minimal rake ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems ruby-webrick ruby-xmlrpc ruby3.0 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc samtools cmake-doc ninja-build cmake-format dh-make flit python3-build python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libbamtools-doc libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config icu-doc liblzma-doc ncurses-doc libtool-doc gfortran | fortran95-compiler gcj-jdk llvm-14-doc m4-doc apparmor less libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python-pygments-doc ttf-bitstream-vera python3.10-venv python3.10-doc binfmt-support ri ruby-dev bundler Recommended packages: bzip2-doc libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev binfmt-support mime-support libmail-sendmail-perl python3-numpy python3-pytest python3-simplejson python3-psutil zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libbam-dev libbamtools-dev libbamtools2.5.1 libbrotli1 libbsd0 libbwa-dev libbz2-dev libclang-cpp14 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libedit2 libelf1 libexpat1 libffi-dev libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev libicu71 libjsoncpp25 libldap-2.5-0 libllvm14 liblzma-dev libmagic-mgc libmagic1 libmd0 libmpdec3 libncurses-dev libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpfm4 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librhash0 librtmp1 libruby3.0 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssw-dev libssw0 libsub-override-perl libtinfo-dev libtool libuchardet0 libuv1 libxml2 libxml2-dev libyaml-0-2 libz3-4 libz3-dev llvm llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools llvm-dev llvm-runtime lynx lynx-common m4 man-db media-types po-debconf python3 python3-all python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-pygments python3-yaml python3.10 python3.10-minimal rake ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems ruby-webrick ruby-xmlrpc ruby3.0 rubygems-integration sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. 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Setting up libldap-2.5-0:armhf (2.5.11+dfsg-1~exp1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:armhf (3.10.4-4) ... Setting up libnlopt-cxx-dev:armhf (2.7.1-4build1) ... Setting up libxml2-dev:armhf (2.9.14+dfsg-1) ... Setting up libbamtools-dev:armhf (2.5.1+dfsg-10build1) ... Setting up libbam-dev (0.1.19+dfsg-5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libllvm14:armhf (1:14.0.3-2ubuntu1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:armhf (7.83.1-1) ... Setting up lynx (2.9.0dev.10-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up llvm-14-linker-tools (1:14.0.3-2ubuntu1) ... Setting up libpython3-stdlib:armhf (3.10.4-0ubuntu2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.10 (3.10.4-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:armhf (7.83.1-1) ... Setting up python3 (3.10.4-0ubuntu2) ... Setting up libcurl4-gnutls-dev:armhf (7.83.1-1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up llvm-14-runtime (1:14.0.3-2ubuntu1) ... Setting up llvm-runtime:armhf (1:14.0-55~exp2) ... Setting up libclang-cpp14 (1:14.0.3-2ubuntu1) ... Setting up cmake (3.23.1-2ubuntu1) ... Setting up python3-lib2to3 (3.10.4-0ubuntu1) ... Setting up llvm-14 (1:14.0.3-2ubuntu1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.4-0ubuntu1) ... Setting up dh-python (5.20220403) ... Setting up libhts3:armhf (1.13+ds-2build2) ... Setting up python3-joblib (0.17.0-4ubuntu1) ... Setting up libhts-dev:armhf (1.13+ds-2build2) ... Setting up python3-all (3.10.4-0ubuntu2) ... Setting up python3-yaml (5.4.1-1ubuntu1) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up python3-pygments (2.11.2+dfsg-2) ... Setting up llvm (1:14.0-55~exp2) ... Setting up llvm-14-tools (1:14.0.3-2ubuntu1) ... Setting up llvm-14-dev (1:14.0.3-2ubuntu1) ... Setting up llvm-dev (1:14.0-55~exp2) ... Setting up rake (13.0.6-3) ... Setting up libruby3.0:armhf (3.0.2-7ubuntu2) ... Setting up ruby-rubygems (3.3.5-2) ... Setting up ruby3.0 (3.0.2-7ubuntu2) ... Setting up ruby (1:3.0~exp1) ... Setting up ruby-asciidoctor (2.0.16-2) ... Setting up asciidoctor (2.0.16-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-110-generic #124-Ubuntu SMP Thu Apr 14 13:14:54 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.38-4ubuntu1 dpkg-dev_1.21.7ubuntu3 g++-11_11.3.0-1ubuntu1 gcc-11_11.3.0-1ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-1ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-28.29 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 asciidoctor_2.0.16-2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-4ubuntu4 autotools-dev_20220109.1 base-files_12ubuntu5 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man-db_2.10.2-1 mawk_1.3.4.20200120-3 media-types_8.0.0 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.3-0ubuntu1 optipng_0.7.7-2build1 passwd_1:4.8.1-2ubuntu2 patch_2.7.6-7build2 perl_5.34.0-3ubuntu1 perl-base_5.34.0-3ubuntu1 perl-modules-5.34_5.34.0-3ubuntu1 pinentry-curses_1.2.0-1ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-6ubuntu2 python3_3.10.4-0ubuntu2 python3-all_3.10.4-0ubuntu2 python3-distutils_3.10.4-0ubuntu1 python3-joblib_0.17.0-4ubuntu1 python3-lib2to3_3.10.4-0ubuntu1 python3-minimal_3.10.4-0ubuntu2 python3-pkg-resources_59.6.0-1.2 python3-pygments_2.11.2+dfsg-2 python3-yaml_5.4.1-1ubuntu1 python3.10_3.10.4-4 python3.10-minimal_3.10.4-4 rake_13.0.6-3 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 ruby_1:3.0~exp1 ruby-asciidoctor_2.0.16-2 ruby-net-telnet_0.1.1-2 ruby-rubygems_3.3.5-2 ruby-webrick_1.7.0-3 ruby-xmlrpc_0.3.2-2 ruby3.0_3.0.2-7ubuntu2 rubygems-integration_1.18 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_249.11-0ubuntu3.1 systemd-sysv_249.11-0ubuntu3.1 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 zlib1g-dev_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spades Binary: spades Architecture: any Version: 3.15.4+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Sascha Steinbiss , Michael R. Crusoe , Alexandre Mestiashvili , Étienne Mollier Homepage: http://cab.spbu.ru/software/spades/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/spades Vcs-Git: https://salsa.debian.org/med-team/spades.git Testsuite: autopkgtest Testsuite-Triggers: bwa Build-Depends: debhelper-compat (= 13), dh-python, cmake, python3-all, zlib1g-dev, libbz2-dev, libbam-dev, libbamtools-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, llvm-dev, python3-yaml, python3-joblib, asciidoctor, bwa, libbwa-dev, lynx Package-List: spades deb science optional arch=any Checksums-Sha1: 73dd6ee6d3502c1b19cca52ecac673ac07e07714 9900716 spades_3.15.4+dfsg.orig.tar.xz 35712b30fc13ce110f4cbdf07f520ed5c0bad509 28968 spades_3.15.4+dfsg-2.debian.tar.xz Checksums-Sha256: b50b4588b479ab8fc2a9d90829fa331bd6239e78e772cecfddaad6c1892a3a95 9900716 spades_3.15.4+dfsg.orig.tar.xz 255bb5438cd1e70e4fab162d79812df8c5f183bdd1d9a2550c44d34ef0f63752 28968 spades_3.15.4+dfsg-2.debian.tar.xz Files: ddecb4cd138643e99d60383c64cf3c81 9900716 spades_3.15.4+dfsg.orig.tar.xz f22e7979016cd11e96be848fedbc20b1 28968 spades_3.15.4+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmJ+W8ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGgAA//TXkoZj5FiflCUD2GZETf9nzivJLkE4/3 x6dhH8iWtINNnZex+BFAoCSxtvAMoENx0gEUAuI5Iu3M9SK9MIcVMWdbaDnBU00l H+BAjmROq6OikhVlvlAdQyqSp5lQ341N8Yw5eFstHI/CWRRs4KXzegI+9+PhBT94 HWR49irCGQvB+Vi7RjuRXga3IVPejIMiv/IXu/LFdSZ6WEozPbwDfx+LzxP2ah5e HunA/oREp/fktmZLLqNc+EM+lpahyVuS5mK2bZu5YBr8+v10v9q1LFZcOUfMVlQO LvhdhV+fOgw4mf+1rbUqWoaTNvj0WsmAjzStQfYd/RocCTZ/nIggBEnDvm4eNnHf lQZ2NDEABCD7XqQnJpq447ww/cZIor4ZvoeqYbfn1YF/PveSzcZjJfVTMKpN93pV rzHxlht/+uJF0LxQDu4WvQHa0j2L9+VBvzFgJtyFZZBolIuhglJnb3GVjm2gJ/Pt Qv/zVG4QL8X9fvFQdG2O6SzHUAV/vcnyswBUalKU8jc17um8zhTCBkv6CBXM1WOl 3iGuHV3APgG3V4tlPpjDEX0tds41WiW4zTEqIr92NUp2jjxuC/4PCkH2cj23yxrz SxJhazd+Il2X0dIxcF65FgQSPmU/gLiAQBLZFK+IatyHTw3qPW3bwAnwHaoPVCVr 8pBl4hWTfuQ= =JORY -----END PGP SIGNATURE----- gpgv: Signature made Fri May 13 13:23:13 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./spades_3.15.4+dfsg-2.dsc dpkg-source: info: extracting spades in /<> dpkg-source: info: unpacking spades_3.15.4+dfsg.orig.tar.xz dpkg-source: info: unpacking spades_3.15.4+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0002_use_debian_packaged_python-joblib.patch dpkg-source: info: applying 0003_accept-system-bwa.patch dpkg-source: info: applying 0101_cmake_ignore_removed_python-yaml.patch dpkg-source: info: applying 0102_cmake_ignore_removed_python-joblib.patch dpkg-source: info: applying 0103_use-debian-packaged-bwa.patch dpkg-source: info: applying 0114_use_debian_provided_libs.patch dpkg-source: info: applying 0118_adjust_spades_home_again.patch dpkg-source: info: applying fix-bool-cast dpkg-source: info: applying python3.patch dpkg-source: info: applying yaml_load.patch dpkg-source: info: applying debuginfo.patch dpkg-source: info: applying debian_bwa_zlib.patch dpkg-source: info: applying workdir_for_test.patch dpkg-source: info: applying disable_local_convertutf.patch dpkg-source: info: applying fix-sigill-on-non-popcnt-cpus.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23744772 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23744772 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23744772 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package spades dpkg-buildpackage: info: source version 3.15.4+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --sourcedirectory=assembler/src --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean find . -name "*.pyc" -delete rm -rf /<>/debian/man_src/*.html /<>/debian/man_src/*.? rm -rf /<>/debian/man make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=assembler/src -O--buildsystem=cmake debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean -X.orig make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --with python3 --sourcedirectory=assembler/src --buildsystem=cmake dh_update_autotools_config -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake dh_autoreconf -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DBoost_NO_BOOST_CMAKE=TRUE cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBoost_NO_BOOST_CMAKE=TRUE ../assembler/src CMake Warning (dev) in CMakeLists.txt: No project() command is present. The top-level CMakeLists.txt file must contain a literal, direct call to the project() command. Add a line of code such as project(ProjectName) near the top of the file, but after cmake_minimum_required(). CMake is pretending there is a "project(Project)" command on the first line. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 11.3.0 -- The CXX compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libncurses.so -- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libncurses.so - found -- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libcurses.so -- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libcurses.so - found -- Found Boost: /<>/assembler/ext/include (found version "1.63.0") Making Release Configuration... Building SPAdes from N/A, sha: N/A -- Override standard malloc (MI_OVERRIDE=ON) -- Enable abort() calls on memory allocation failure (MI_XMALLOC=ON) -- Enable printing of error and warning messages by default (MI_SHOW_ERRORS=ON) -- Use the C++ compiler to compile (MI_USE_CXX=ON) -- -- Library base name: mimalloc-none -- Build type : none -- Compiler : /usr/bin/c++ -- Install directory: /usr/lib/mimalloc-1.6 -- Build targets : object -- -- Looking for open -- Looking for open - found -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for signal.h -- Looking for signal.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for cxxabi.h -- Looking for cxxabi.h - not found -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for mach/mach.h -- Looking for mach/mach.h - not found -- Looking for link.h -- Looking for link.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for sys/mman.h -- Looking for sys/mman.h - found -- Looking for fcntl.h -- Looking for fcntl.h - found -- Looking for malloc/malloc.h -- Looking for malloc/malloc.h - not found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for sys/resource.h -- Looking for sys/resource.h - found -- Looking for backtrace -- Looking for backtrace - found -- backtrace facility detected in default set of libraries -- Found Backtrace: /usr/include -- Looking for futimens -- Looking for futimens - found -- Looking for futimes -- Looking for futimes - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for getpagesize -- Looking for getpagesize - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for mallinfo -- Looking for mallinfo - found -- Looking for mallctl -- Looking for mallctl - not found -- Looking for malloc_zone_statistics -- Looking for malloc_zone_statistics - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Looking for pthread_getspecific in pthread -- Looking for pthread_getspecific in pthread - found -- Looking for pthread_rwlock_init in pthread -- Looking for pthread_rwlock_init in pthread - found -- Looking for pthread_mutex_lock in pthread -- Looking for pthread_mutex_lock in pthread - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test HAVE_FFI_CALL -- Performing Test HAVE_FFI_CALL - Success -- Found FFI: /usr/lib/arm-linux-gnueabihf/libffi.so -- Performing Test Terminfo_LINKABLE -- Performing Test Terminfo_LINKABLE - Success -- Found Terminfo: /usr/lib/arm-linux-gnueabihf/libtinfo.so -- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.14") -- Looking for include file endian.h -- Looking for include file endian.h - found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file stdint.h -- Looking for include file stdint.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/param.h -- Looking for include file sys/param.h - found -- Looking for include file sys/sysctl.h -- Looking for include file sys/sysctl.h - not found -- Looking for include file emmintrin.h -- Looking for include file emmintrin.h - not found -- Looking for include file pmmintrin.h -- Looking for include file pmmintrin.h - not found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for chmod -- Looking for chmod - found -- Looking for fseeko -- Looking for fseeko - found -- Looking for fstat -- Looking for fstat - found -- Looking for getcwd -- Looking for getcwd - found -- Looking for getpid -- Looking for getpid - found -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for popen -- Looking for popen - found -- Looking for putenv -- Looking for putenv - found -- Looking for stat -- Looking for stat - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for sysctl -- Looking for sysctl - not found -- Looking for times -- Looking for times - found -- Looking for erfc -- Looking for erfc - not found CMake Deprecation Warning at /<>/assembler/ext/src/googletest/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at /<>/assembler/ext/src/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.4") CMake Deprecation Warning at projects/mts/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-arm-linux-gnueabihf make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- all debruijn_test include_test cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" all debruijn_test include_test VERBOSE=1 make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<>/assembler/src -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/depend make -f ext/bamtools/api/CMakeFiles/BamTools.dir/build.make ext/bamtools/api/CMakeFiles/BamTools.dir/depend make -f ext/cppformat/CMakeFiles/format.dir/build.make ext/cppformat/CMakeFiles/format.dir/depend make -f ext/getopt_pp/CMakeFiles/getopt_pp.dir/build.make ext/getopt_pp/CMakeFiles/getopt_pp.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/assembler/src /<>/assembler/ext/src/ConsensusCore /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/assembler/src /<>/assembler/ext/src/cppformat /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/ext/cppformat /<>/obj-arm-linux-gnueabihf/ext/cppformat/CMakeFiles/format.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/assembler/src /<>/assembler/ext/src/bamtools/api /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/ext/bamtools/api /<>/obj-arm-linux-gnueabihf/ext/bamtools/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/assembler/src /<>/assembler/ext/src/getopt_pp /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/ext/getopt_pp /<>/obj-arm-linux-gnueabihf/ext/getopt_pp/CMakeFiles/getopt_pp.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build make -f ext/cppformat/CMakeFiles/format.dir/build.make ext/cppformat/CMakeFiles/format.dir/build make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f ext/getopt_pp/CMakeFiles/getopt_pp.dir/build.make ext/getopt_pp/CMakeFiles/getopt_pp.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f ext/bamtools/api/CMakeFiles/BamTools.dir/build.make ext/bamtools/api/CMakeFiles/BamTools.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 0%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o [ 0%] Building CXX object ext/cppformat/CMakeFiles/format.dir/format.cc.o cd /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/ConsensusCore -I/<>/assembler/src/../ext/include/ConsensusCore -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o -MF CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o.d -o CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o -c /<>/assembler/ext/src/ConsensusCore/AffineAlignment.cpp cd /<>/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/c++ -DFMT_USE_FILE_DESCRIPTORS=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/cppformat -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wextra -pedantic -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/cppformat/CMakeFiles/format.dir/format.cc.o -MF CMakeFiles/format.dir/format.cc.o.d -o CMakeFiles/format.dir/format.cc.o -c /<>/assembler/ext/src/cppformat/format.cc [ 0%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<>/assembler/ext/src/bamtools/api/BamAlignment.cpp [ 1%] Building CXX object ext/getopt_pp/CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/getopt_pp/CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o -MF CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o.d -o CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o -c /<>/assembler/ext/src/getopt_pp/getopt_pp.cpp [ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<>/assembler/ext/src/bamtools/api/BamMultiReader.cpp [ 1%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Coverage.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/ConsensusCore -I/<>/assembler/src/../ext/include/ConsensusCore -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Coverage.cpp.o -MF CMakeFiles/ConsensusCore.dir/Coverage.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Coverage.cpp.o -c /<>/assembler/ext/src/ConsensusCore/Coverage.cpp [ 1%] Linking CXX static library libgetopt_pp.a cd /<>/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/cmake -P CMakeFiles/getopt_pp.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/cmake -E cmake_link_script CMakeFiles/getopt_pp.dir/link.txt --verbose=1 /usr/bin/ar qc libgetopt_pp.a CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o /usr/bin/ranlib libgetopt_pp.a make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 1%] Built target getopt_pp make -f ext/llvm/CMakeFiles/llvm-support.dir/build.make ext/llvm/CMakeFiles/llvm-support.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/assembler/src /<>/assembler/ext/src/llvm /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/ext/llvm /<>/obj-arm-linux-gnueabihf/ext/llvm/CMakeFiles/llvm-support.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f ext/llvm/CMakeFiles/llvm-support.dir/build.make ext/llvm/CMakeFiles/llvm-support.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 1%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/APFloat.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/APFloat.cpp.o -MF CMakeFiles/llvm-support.dir/APFloat.cpp.o.d -o CMakeFiles/llvm-support.dir/APFloat.cpp.o -c /<>/assembler/ext/src/llvm/APFloat.cpp [ 1%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Mutation.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/ConsensusCore -I/<>/assembler/src/../ext/include/ConsensusCore -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Mutation.cpp.o -MF CMakeFiles/ConsensusCore.dir/Mutation.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Mutation.cpp.o -c /<>/assembler/ext/src/ConsensusCore/Mutation.cpp [ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamReader.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<>/assembler/ext/src/bamtools/api/BamReader.cpp [ 1%] Building CXX object ext/cppformat/CMakeFiles/format.dir/posix.cc.o cd /<>/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/c++ -DFMT_USE_FILE_DESCRIPTORS=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/cppformat -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wextra -pedantic -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/cppformat/CMakeFiles/format.dir/posix.cc.o -MF CMakeFiles/format.dir/posix.cc.o.d -o CMakeFiles/format.dir/posix.cc.o -c /<>/assembler/ext/src/cppformat/posix.cc [ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<>/assembler/ext/src/bamtools/api/BamWriter.cpp [ 1%] Linking CXX static library libformat.a cd /<>/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/cmake -P CMakeFiles/format.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/cmake -E cmake_link_script CMakeFiles/format.dir/link.txt --verbose=1 /usr/bin/ar qc libformat.a CMakeFiles/format.dir/format.cc.o CMakeFiles/format.dir/posix.cc.o /usr/bin/ranlib libformat.a make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 1%] Built target format make -f ext/gqf/CMakeFiles/gqf.dir/build.make ext/gqf/CMakeFiles/gqf.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/assembler/src /<>/assembler/ext/src/gqf /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/ext/gqf /<>/obj-arm-linux-gnueabihf/ext/gqf/CMakeFiles/gqf.dir/DependInfo.cmake --color= [ 2%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<>/assembler/ext/src/bamtools/api/SamHeader.cpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f ext/gqf/CMakeFiles/gqf.dir/build.make ext/gqf/CMakeFiles/gqf.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 2%] Building C object ext/gqf/CMakeFiles/gqf.dir/gqf.c.o cd /<>/obj-arm-linux-gnueabihf/ext/gqf && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/gqf/CMakeFiles/gqf.dir/gqf.c.o -MF CMakeFiles/gqf.dir/gqf.c.o.d -o CMakeFiles/gqf.dir/gqf.c.o -c /<>/assembler/ext/src/gqf/gqf.c /<>/assembler/ext/include/gqf/gqf.h: In function 'qf_deserialize': /<>/assembler/ext/src/gqf/gqf.c:1606:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1606 | fread(qf->metadata, sizeof(qfmetadata), 1, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/gqf/gqf.c:1615:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1615 | fread(qf->blocks, qf->metadata->size, 1, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<>/assembler/ext/src/bamtools/api/SamProgram.cpp [ 3%] Linking C static library libgqf.a cd /<>/obj-arm-linux-gnueabihf/ext/gqf && /usr/bin/cmake -P CMakeFiles/gqf.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/ext/gqf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gqf.dir/link.txt --verbose=1 /usr/bin/ar qc libgqf.a CMakeFiles/gqf.dir/gqf.c.o /usr/bin/ranlib libgqf.a make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 3%] Built target gqf make -f ext/edlib/CMakeFiles/edlib.dir/build.make ext/edlib/CMakeFiles/edlib.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/assembler/src /<>/assembler/ext/src/edlib /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/ext/edlib /<>/obj-arm-linux-gnueabihf/ext/edlib/CMakeFiles/edlib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f ext/edlib/CMakeFiles/edlib.dir/build.make ext/edlib/CMakeFiles/edlib.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 3%] Building CXX object ext/edlib/CMakeFiles/edlib.dir/edlib.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/edlib && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/edlib/CMakeFiles/edlib.dir/edlib.cpp.o -MF CMakeFiles/edlib.dir/edlib.cpp.o.d -o CMakeFiles/edlib.dir/edlib.cpp.o -c /<>/assembler/ext/src/edlib/edlib.cpp [ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<>/assembler/ext/src/bamtools/api/SamProgramChain.cpp [ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<>/assembler/ext/src/bamtools/api/SamReadGroup.cpp [ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<>/assembler/ext/src/bamtools/api/SamReadGroupDictionary.cpp [ 4%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/ConsensusCore -I/<>/assembler/src/../ext/include/ConsensusCore -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o -MF CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o.d -o CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o -c /<>/assembler/ext/src/ConsensusCore/PairwiseAlignment.cpp [ 4%] Linking CXX static library libedlib.a cd /<>/obj-arm-linux-gnueabihf/ext/edlib && /usr/bin/cmake -P CMakeFiles/edlib.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/ext/edlib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib.dir/link.txt --verbose=1 /usr/bin/ar qc libedlib.a CMakeFiles/edlib.dir/edlib.cpp.o 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/<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/gfa1/CMakeFiles/gfa1.dir/gfa.c.o -MF CMakeFiles/gfa1.dir/gfa.c.o.d -o CMakeFiles/gfa1.dir/gfa.c.o -c /<>/assembler/ext/src/gfa1/gfa.c In file included from /<>/assembler/ext/src/gfa1/gfa.c:1093: /<>/assembler/ext/src/gfa1/kdq.h:9:24: error: width of 'front' exceeds its type 9 | size_t front:58, bits:6, count, mask; \ | ^~~~~ /<>/assembler/ext/src/gfa1/kdq.h:93:9: note: in expansion of macro '__KDQ_TYPE' 93 | __KDQ_TYPE(type) \ | ^~~~~~~~~~ /<>/assembler/ext/src/gfa1/kdq.h:104:24: note: in expansion of macro 'KDQ_INIT2' 104 | #define KDQ_INIT(type) KDQ_INIT2(type, static inline klib_unused) | ^~~~~~~~~ /<>/assembler/ext/src/gfa1/gfa.c:1094:1: note: in expansion of macro 'KDQ_INIT' 1094 | KDQ_INIT(uint64_t) | ^~~~~~~~ make[4]: *** [ext/gfa1/CMakeFiles/gfa1.dir/build.make:79: ext/gfa1/CMakeFiles/gfa1.dir/gfa.c.o] Error 1 make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:1536: ext/gfa1/CMakeFiles/gfa1.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 4%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Sequence.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/ConsensusCore -I/<>/assembler/src/../ext/include/ConsensusCore -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Sequence.cpp.o -MF CMakeFiles/ConsensusCore.dir/Sequence.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Sequence.cpp.o -c /<>/assembler/ext/src/ConsensusCore/Sequence.cpp [ 4%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/APInt.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG 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-I/<>/assembler/src/../ext/include/ConsensusCore -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Utils.cpp.o -MF CMakeFiles/ConsensusCore.dir/Utils.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Utils.cpp.o -c /<>/assembler/ext/src/ConsensusCore/Utils.cpp [ 5%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<>/assembler/ext/src/bamtools/api/SamSequence.cpp [ 5%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Version.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/ConsensusCore -I/<>/assembler/src/../ext/include/ConsensusCore -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Version.cpp.o -MF CMakeFiles/ConsensusCore.dir/Version.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Version.cpp.o -c /<>/assembler/ext/src/ConsensusCore/Version.cpp [ 5%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/ConsensusCore -I/<>/assembler/src/../ext/include/ConsensusCore -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o -MF CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o -c /<>/assembler/ext/src/ConsensusCore/Matrix/DenseMatrix.cpp In file included from /<>/assembler/ext/src/ConsensusCore/Matrix/DenseMatrix.cpp:39: /<>/assembler/src/../ext/include/ConsensusCore/Matrix/DenseMatrix.hpp:40:10: fatal error: xmmintrin.h: No such file or directory 40 | #include | ^~~~~~~~~~~~~ compilation terminated. make[4]: *** [ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make:177: ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... [ 5%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<>/assembler/ext/src/bamtools/api/SamSequenceDictionary.cpp [ 5%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/bam/BamHeader_p.cpp [ 5%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/bam/BamMultiReader_p.cpp [ 5%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/bam/BamRandomAccessController_p.cpp [ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/bam/BamReader_p.cpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:1250: ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/all] Error 2 [ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/bam/BamWriter_p.cpp [ 6%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Atomic.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Atomic.cpp.o -MF CMakeFiles/llvm-support.dir/Atomic.cpp.o.d -o CMakeFiles/llvm-support.dir/Atomic.cpp.o -c /<>/assembler/ext/src/llvm/Atomic.cpp [ 7%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o -MF CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o.d -o CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o -c /<>/assembler/ext/src/llvm/CrashRecoveryContext.cpp [ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/index/BamIndexFactory_p.cpp [ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp [ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp [ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/io/BamDeviceFactory_p.cpp [ 9%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Debug.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Debug.cpp.o -MF CMakeFiles/llvm-support.dir/Debug.cpp.o.d -o CMakeFiles/llvm-support.dir/Debug.cpp.o -c /<>/assembler/ext/src/llvm/Debug.cpp [ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/io/BamFile_p.cpp [ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/io/BgzfStream_p.cpp In file included from /usr/include/c++/11/vector:72, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:10: /usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator]': /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:10: /usr/include/c++/11/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)': /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:21: /usr/include/c++/11/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ [ 9%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Errno.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Errno.cpp.o -MF CMakeFiles/llvm-support.dir/Errno.cpp.o.d -o CMakeFiles/llvm-support.dir/Errno.cpp.o -c /<>/assembler/ext/src/llvm/Errno.cpp In file included from /usr/include/c++/11/vector:72, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:10: /usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator]': /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)': /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:21: /usr/include/c++/11/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:67, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:10: /usr/include/c++/11/bits/stl_vector.h: In member function 'virtual bool BamTools::Internal::BamToolsIndex::Create()': /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 [ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/io/ByteArray_p.cpp /usr/include/c++/11/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)': /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/io/ILocalIODevice_p.cpp In file included from /usr/include/c++/11/vector:72, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator]': /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/11/vector:67, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/11/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)': /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 9%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Error.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Error.cpp.o -MF CMakeFiles/llvm-support.dir/Error.cpp.o.d -o CMakeFiles/llvm-support.dir/Error.cpp.o -c /<>/assembler/ext/src/llvm/Error.cpp /usr/include/c++/11/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)': /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/11/bits/stl_vector.h:1198:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/11/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 [ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/io/ParallelBgzfStream_p.cpp In file included from /usr/include/c++/11/vector:67, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/11/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)': /usr/include/c++/11/bits/stl_vector.h:960:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/io/RollingBuffer_p.cpp In file included from /usr/include/c++/11/vector:72, from /<>/assembler/ext/include/bamtools/api/BamAux.h:18, from /<>/assembler/ext/include/bamtools/api/BamAlignment.h:14, from /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/11/bits/vector.tcc: In member function 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set&, std::vector&)': /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:175:1: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 175 | } | ^ In file included from /usr/include/c++/11/algorithm:62, from /<>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:21: /usr/include/c++/11/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)': /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/io/SerialBgzfStream_p.cpp [ 10%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c:32: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c: In function 'bgzf_check_EOF': /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:73:34: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | #define _bgzf_read(fp, buf, len) fread(buf, 1, len, (_bgzf_file_t)fp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c:578:9: note: in expansion of macro '_bgzf_read' 578 | _bgzf_read(fp->fp, buf, 28); | ^~~~~~~~~~ [ 10%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c [ 11%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:46: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c: In function 'kftp_send_cmd': /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:236:9: note: in expansion of macro 'netwrite' 236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c: In function 'khttp_connect_file': /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:415:9: note: in expansion of macro 'netwrite' 415 | netwrite(fp->fd, buf, l); | ^~~~~~~~ In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c:5: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c:4: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ [ 11%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c:12: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c:11: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ [ 11%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c [ 11%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c:14: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c:13: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c:6: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ [ 11%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o -MF CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o.d -o CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o -c /<>/assembler/ext/src/llvm/ErrorHandling.cpp [ 11%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c [ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.c In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c:8: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c:7: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ [ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o -c /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c [ 12%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/sam/SamFormatParser_p.cpp In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.h:11, from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c:10: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined 8 | safe_mutex_unlock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~~~ /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined 5 | safe_mutex_lock(pthread_mutex_t *mutex); | ^~~~~~~~~~~~~~~ In file included from /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c:7: /<>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined 240 | unpackInt16(const uint8_t* buffer); | ^~~~~~~~~~~ [ 12%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/sam/SamFormatPrinter_p.cpp [ 12%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/sam/SamHeaderValidator_p.cpp [ 13%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/FoldingSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/FoldingSet.cpp.o -MF CMakeFiles/llvm-support.dir/FoldingSet.cpp.o.d -o CMakeFiles/llvm-support.dir/FoldingSet.cpp.o -c /<>/assembler/ext/src/llvm/FoldingSet.cpp [ 14%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/bamtools -I/<>/assembler/ext/src/bamtools/src -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<>/assembler/ext/src/bamtools/api/internal/utils/BamException_p.cpp [ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o -MF CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o.d -o CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o -c /<>/assembler/ext/src/llvm/FormatVariadic.cpp [ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Hashing.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Hashing.cpp.o -MF CMakeFiles/llvm-support.dir/Hashing.cpp.o.d -o CMakeFiles/llvm-support.dir/Hashing.cpp.o -c /<>/assembler/ext/src/llvm/Hashing.cpp [ 14%] Linking CXX static library libBamTools.a cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cmake -P CMakeFiles/BamTools.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/ar qc libBamTools.a CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o [ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Host.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Host.cpp.o -MF CMakeFiles/llvm-support.dir/Host.cpp.o.d -o CMakeFiles/llvm-support.dir/Host.cpp.o -c /<>/assembler/ext/src/llvm/Host.cpp /usr/bin/ranlib libBamTools.a make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 14%] Built target BamTools [ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/JSON.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/JSON.cpp.o -MF CMakeFiles/llvm-support.dir/JSON.cpp.o.d -o CMakeFiles/llvm-support.dir/JSON.cpp.o -c /<>/assembler/ext/src/llvm/JSON.cpp [ 15%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/LEB128.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/LEB128.cpp.o -MF CMakeFiles/llvm-support.dir/LEB128.cpp.o.d -o CMakeFiles/llvm-support.dir/LEB128.cpp.o -c /<>/assembler/ext/src/llvm/LEB128.cpp [ 15%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/LineIterator.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/LineIterator.cpp.o -MF CMakeFiles/llvm-support.dir/LineIterator.cpp.o.d -o CMakeFiles/llvm-support.dir/LineIterator.cpp.o -c /<>/assembler/ext/src/llvm/LineIterator.cpp [ 15%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Locale.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Locale.cpp.o -MF CMakeFiles/llvm-support.dir/Locale.cpp.o.d -o CMakeFiles/llvm-support.dir/Locale.cpp.o -c /<>/assembler/ext/src/llvm/Locale.cpp [ 15%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MD5.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MD5.cpp.o -MF CMakeFiles/llvm-support.dir/MD5.cpp.o.d -o CMakeFiles/llvm-support.dir/MD5.cpp.o -c /<>/assembler/ext/src/llvm/MD5.cpp [ 15%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o -MF CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o.d -o CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o -c /<>/assembler/ext/src/llvm/ManagedStatic.cpp [ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MemAlloc.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MemAlloc.cpp.o -MF CMakeFiles/llvm-support.dir/MemAlloc.cpp.o.d -o CMakeFiles/llvm-support.dir/MemAlloc.cpp.o -c /<>/assembler/ext/src/llvm/MemAlloc.cpp [ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o -MF CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o.d -o CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o -c /<>/assembler/ext/src/llvm/MemoryBuffer.cpp [ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o -MF CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o.d -o CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o -c /<>/assembler/ext/src/llvm/NativeFormatting.cpp [ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Path.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Path.cpp.o -MF CMakeFiles/llvm-support.dir/Path.cpp.o.d -o CMakeFiles/llvm-support.dir/Path.cpp.o -c /<>/assembler/ext/src/llvm/Path.cpp [ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Process.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Process.cpp.o -MF CMakeFiles/llvm-support.dir/Process.cpp.o.d -o CMakeFiles/llvm-support.dir/Process.cpp.o -c /<>/assembler/ext/src/llvm/Process.cpp [ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Program.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Program.cpp.o -MF CMakeFiles/llvm-support.dir/Program.cpp.o.d -o CMakeFiles/llvm-support.dir/Program.cpp.o -c /<>/assembler/ext/src/llvm/Program.cpp In file included from /<>/assembler/ext/src/llvm/Process.cpp:100: /<>/assembler/ext/src/llvm/Process.inc: In static member function 'static size_t llvm::sys::Process::GetMallocUsage()': /<>/assembler/ext/src/llvm/Process.inc:94:10: warning: 'mallinfo mallinfo()' is deprecated [-Wdeprecated-declarations] 94 | mi = ::mallinfo(); | ^~~~~~~~ In file included from /<>/assembler/ext/src/llvm/Process.inc:35, from /<>/assembler/ext/src/llvm/Process.cpp:100: /usr/include/malloc.h:114:24: note: declared here 114 | extern struct mallinfo mallinfo (void) __THROW __MALLOC_DEPRECATED; | ^~~~~~~~ In file included from /<>/assembler/ext/src/llvm/Process.cpp:100: /<>/assembler/ext/src/llvm/Process.inc:94:18: warning: 'mallinfo mallinfo()' is deprecated [-Wdeprecated-declarations] 94 | mi = ::mallinfo(); | ~~~~~~~~~~^~ In file included from /<>/assembler/ext/src/llvm/Process.inc:35, from /<>/assembler/ext/src/llvm/Process.cpp:100: /usr/include/malloc.h:114:24: note: declared here 114 | extern struct mallinfo mallinfo (void) __THROW __MALLOC_DEPRECATED; | ^~~~~~~~ [ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Regex.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Regex.cpp.o -MF CMakeFiles/llvm-support.dir/Regex.cpp.o.d -o CMakeFiles/llvm-support.dir/Regex.cpp.o -c /<>/assembler/ext/src/llvm/Regex.cpp [ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Signals.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Signals.cpp.o -MF CMakeFiles/llvm-support.dir/Signals.cpp.o.d -o CMakeFiles/llvm-support.dir/Signals.cpp.o -c /<>/assembler/ext/src/llvm/Signals.cpp [ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/SmallVector.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/SmallVector.cpp.o -MF CMakeFiles/llvm-support.dir/SmallVector.cpp.o.d -o CMakeFiles/llvm-support.dir/SmallVector.cpp.o -c /<>/assembler/ext/src/llvm/SmallVector.cpp [ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/SourceMgr.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/SourceMgr.cpp.o -MF CMakeFiles/llvm-support.dir/SourceMgr.cpp.o.d -o CMakeFiles/llvm-support.dir/SourceMgr.cpp.o -c /<>/assembler/ext/src/llvm/SourceMgr.cpp [ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringExtras.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringExtras.cpp.o -MF CMakeFiles/llvm-support.dir/StringExtras.cpp.o.d -o CMakeFiles/llvm-support.dir/StringExtras.cpp.o -c /<>/assembler/ext/src/llvm/StringExtras.cpp [ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringMap.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringMap.cpp.o -MF CMakeFiles/llvm-support.dir/StringMap.cpp.o.d -o CMakeFiles/llvm-support.dir/StringMap.cpp.o -c /<>/assembler/ext/src/llvm/StringMap.cpp [ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringRef.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringRef.cpp.o -MF CMakeFiles/llvm-support.dir/StringRef.cpp.o.d -o CMakeFiles/llvm-support.dir/StringRef.cpp.o -c /<>/assembler/ext/src/llvm/StringRef.cpp [ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringSaver.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringSaver.cpp.o -MF CMakeFiles/llvm-support.dir/StringSaver.cpp.o.d -o CMakeFiles/llvm-support.dir/StringSaver.cpp.o -c /<>/assembler/ext/src/llvm/StringSaver.cpp [ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o -MF CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o.d -o CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o -c /<>/assembler/ext/src/llvm/ThreadLocal.cpp [ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Threading.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Threading.cpp.o -MF CMakeFiles/llvm-support.dir/Threading.cpp.o.d -o CMakeFiles/llvm-support.dir/Threading.cpp.o -c /<>/assembler/ext/src/llvm/Threading.cpp [ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o -MF CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o.d -o CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o -c /<>/assembler/ext/src/llvm/TimeProfiler.cpp [ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Twine.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Twine.cpp.o -MF CMakeFiles/llvm-support.dir/Twine.cpp.o.d -o CMakeFiles/llvm-support.dir/Twine.cpp.o -c /<>/assembler/ext/src/llvm/Twine.cpp [ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Unicode.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Unicode.cpp.o -MF CMakeFiles/llvm-support.dir/Unicode.cpp.o.d -o CMakeFiles/llvm-support.dir/Unicode.cpp.o -c /<>/assembler/ext/src/llvm/Unicode.cpp [ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/WithColor.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/WithColor.cpp.o -MF CMakeFiles/llvm-support.dir/WithColor.cpp.o.d -o CMakeFiles/llvm-support.dir/WithColor.cpp.o -c /<>/assembler/ext/src/llvm/WithColor.cpp [ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/YAMLParser.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/YAMLParser.cpp.o -MF CMakeFiles/llvm-support.dir/YAMLParser.cpp.o.d -o CMakeFiles/llvm-support.dir/YAMLParser.cpp.o -c /<>/assembler/ext/src/llvm/YAMLParser.cpp [ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o -MF CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o.d -o CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o -c /<>/assembler/ext/src/llvm/YAMLTraits.cpp In file included from /usr/include/c++/11/algorithm:62, from /<>/assembler/ext/include/llvm/ADT/iterator.h:13, from /<>/assembler/ext/include/llvm/ADT/STLExtras.h:20, from /<>/assembler/ext/include/llvm/Support/Error.h:16, from /<>/assembler/ext/include/llvm/Support/TimeProfiler.h:12, from /<>/assembler/ext/src/llvm/TimeProfiler.cpp:13: /usr/include/c++/11/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]': /usr/include/c++/11/bits/stl_algo.h:1799:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 In file included from /usr/include/c++/11/bits/stl_algo.h:61, from /usr/include/c++/11/algorithm:62, from /<>/assembler/ext/include/llvm/ADT/iterator.h:13, from /<>/assembler/ext/include/llvm/ADT/STLExtras.h:20, from /<>/assembler/ext/include/llvm/Support/Error.h:16, from /<>/assembler/ext/include/llvm/Support/TimeProfiler.h:12, from /<>/assembler/ext/src/llvm/TimeProfiler.cpp:13: /usr/include/c++/11/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >; _Distance = int; _Tp = std::pair, std::pair > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/11/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ [ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o -MF CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o.d -o CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o -c /<>/assembler/ext/src/llvm/raw_os_ostream.cpp In file included from /usr/include/c++/11/vector:72, from /<>/assembler/ext/include/llvm/ADT/ArrayRef.h:25, from /<>/assembler/ext/include/llvm/ADT/StringExtras.h:16, from /<>/assembler/ext/include/llvm/Support/Error.h:18, from /<>/assembler/ext/include/llvm/Support/TimeProfiler.h:12, from /<>/assembler/ext/src/llvm/TimeProfiler.cpp:13: /usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, const std::pair > >&}; _Tp = std::pair, std::pair > > >; _Alloc = std::allocator, std::pair > > > >]': /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector, std::pair > > > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector, std::pair > > > >::iterator' changed in GCC 7.1 In file included from /usr/include/c++/11/algorithm:62, from /<>/assembler/ext/include/llvm/ADT/iterator.h:13, from /<>/assembler/ext/include/llvm/ADT/STLExtras.h:20, from /<>/assembler/ext/include/llvm/Support/Error.h:16, from /<>/assembler/ext/include/llvm/Support/TimeProfiler.h:12, from /<>/assembler/ext/src/llvm/TimeProfiler.cpp:13: /usr/include/c++/11/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1925:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 /usr/include/c++/11/bits/stl_algo.h:1939:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from /<>/assembler/ext/include/llvm/ADT/ArrayRef.h:25, from /<>/assembler/ext/include/llvm/ADT/StringExtras.h:16, from /<>/assembler/ext/include/llvm/Support/Error.h:18, from /<>/assembler/ext/include/llvm/Support/TimeProfiler.h:12, from /<>/assembler/ext/src/llvm/TimeProfiler.cpp:13: /usr/include/c++/11/bits/vector.tcc: In member function 'void llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)': /usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from /<>/assembler/ext/include/llvm/ADT/iterator.h:13, from /<>/assembler/ext/include/llvm/ADT/STLExtras.h:20, from /<>/assembler/ext/include/llvm/Support/Error.h:16, from /<>/assembler/ext/include/llvm/Support/TimeProfiler.h:12, from /<>/assembler/ext/src/llvm/TimeProfiler.cpp:13: /usr/include/c++/11/bits/stl_algo.h:1954:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1866:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_algo.h:1871:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, std::pair > > >*, std::vector, std::pair > > > > >' changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/raw_ostream.cpp.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/raw_ostream.cpp.o -MF CMakeFiles/llvm-support.dir/raw_ostream.cpp.o.d -o CMakeFiles/llvm-support.dir/raw_ostream.cpp.o -c /<>/assembler/ext/src/llvm/raw_ostream.cpp [ 21%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regcomp.c.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regcomp.c.o -MF CMakeFiles/llvm-support.dir/regcomp.c.o.d -o CMakeFiles/llvm-support.dir/regcomp.c.o -c /<>/assembler/ext/src/llvm/regcomp.c [ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regerror.c.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regerror.c.o -MF CMakeFiles/llvm-support.dir/regerror.c.o.d -o CMakeFiles/llvm-support.dir/regerror.c.o -c /<>/assembler/ext/src/llvm/regerror.c [ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regexec.c.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regexec.c.o -MF CMakeFiles/llvm-support.dir/regexec.c.o.d -o CMakeFiles/llvm-support.dir/regexec.c.o -c /<>/assembler/ext/src/llvm/regexec.c [ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regfree.c.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regfree.c.o -MF CMakeFiles/llvm-support.dir/regfree.c.o.d -o CMakeFiles/llvm-support.dir/regfree.c.o -c /<>/assembler/ext/src/llvm/regfree.c [ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regstrlcpy.c.o cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<>/assembler/src/include -I/<>/obj-arm-linux-gnueabihf/include -I/<>/assembler/src -I/<>/assembler/src/common -I/<>/assembler/ext/src/llvm -isystem /<>/assembler/src/../ext/include -isystem /<>/assembler/ext/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regstrlcpy.c.o -MF CMakeFiles/llvm-support.dir/regstrlcpy.c.o.d -o CMakeFiles/llvm-support.dir/regstrlcpy.c.o -c /<>/assembler/ext/src/llvm/regstrlcpy.c [ 22%] Linking CXX static library libllvm-support.a cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cmake -P CMakeFiles/llvm-support.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cmake -E cmake_link_script CMakeFiles/llvm-support.dir/link.txt --verbose=1 /usr/bin/ar qc libllvm-support.a "CMakeFiles/llvm-support.dir/APFloat.cpp.o" "CMakeFiles/llvm-support.dir/APInt.cpp.o" "CMakeFiles/llvm-support.dir/Atomic.cpp.o" "CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o" "CMakeFiles/llvm-support.dir/Debug.cpp.o" "CMakeFiles/llvm-support.dir/Errno.cpp.o" "CMakeFiles/llvm-support.dir/Error.cpp.o" "CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o" "CMakeFiles/llvm-support.dir/FoldingSet.cpp.o" "CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o" "CMakeFiles/llvm-support.dir/Hashing.cpp.o" "CMakeFiles/llvm-support.dir/Host.cpp.o" "CMakeFiles/llvm-support.dir/JSON.cpp.o" "CMakeFiles/llvm-support.dir/LEB128.cpp.o" "CMakeFiles/llvm-support.dir/LineIterator.cpp.o" "CMakeFiles/llvm-support.dir/Locale.cpp.o" "CMakeFiles/llvm-support.dir/MD5.cpp.o" "CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o" "CMakeFiles/llvm-support.dir/MemAlloc.cpp.o" "CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o" "CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o" "CMakeFiles/llvm-support.dir/Path.cpp.o" "CMakeFiles/llvm-support.dir/Process.cpp.o" "CMakeFiles/llvm-support.dir/Program.cpp.o" "CMakeFiles/llvm-support.dir/Regex.cpp.o" "CMakeFiles/llvm-support.dir/Signals.cpp.o" "CMakeFiles/llvm-support.dir/SmallVector.cpp.o" "CMakeFiles/llvm-support.dir/SourceMgr.cpp.o" "CMakeFiles/llvm-support.dir/StringExtras.cpp.o" "CMakeFiles/llvm-support.dir/StringMap.cpp.o" "CMakeFiles/llvm-support.dir/StringRef.cpp.o" "CMakeFiles/llvm-support.dir/StringSaver.cpp.o" "CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o" "CMakeFiles/llvm-support.dir/Threading.cpp.o" "CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o" "CMakeFiles/llvm-support.dir/Twine.cpp.o" "CMakeFiles/llvm-support.dir/Unicode.cpp.o" "CMakeFiles/llvm-support.dir/WithColor.cpp.o" "CMakeFiles/llvm-support.dir/YAMLParser.cpp.o" "CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o" "CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o" "CMakeFiles/llvm-support.dir/raw_ostream.cpp.o" "CMakeFiles/llvm-support.dir/regcomp.c.o" "CMakeFiles/llvm-support.dir/regerror.c.o" "CMakeFiles/llvm-support.dir/regexec.c.o" "CMakeFiles/llvm-support.dir/regfree.c.o" "CMakeFiles/llvm-support.dir/regstrlcpy.c.o" /usr/bin/ranlib libllvm-support.a make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 22%] Built target llvm-support make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[2]: *** [Makefile:169: all] Error 2 make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" all debruijn_test include_test VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:29: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:14: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2022-05-20T04:38:21Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 169180 Build-Time: 117 Distribution: kinetic-proposed Fail-Stage: build Host Architecture: armhf Install-Time: 50 Job: spades_3.15.4+dfsg-2.dsc Machine Architecture: arm64 Package: spades Package-Time: 173 Source-Version: 3.15.4+dfsg-2 Space: 169180 Status: attempted Version: 3.15.4+dfsg-2 -------------------------------------------------------------------------------- Finished at 2022-05-20T04:38:21Z Build needed 00:02:53, 169180k disk space E: Build failure (dpkg-buildpackage died) Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744772 Scanning for processes to kill in build PACKAGEBUILD-23744772