https://launchpad.net/ubuntu/+source/srst2/0.2.0-8/+build/20278004 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-076 5.4.0-36-generic #41-Ubuntu SMP Thu Oct 1 14:51:42 UTC 2020 riscv64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 10 Nov 23:14:55 ntpdate[738868]: adjust time server 10.211.37.1 offset -0.001236 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=riscv64 PACKAGEBUILD-20278004 --image-type chroot /home/buildd/filecache-default/455112eaccac6437d04b3f98755ef0ead6caaf02 Creating target for build PACKAGEBUILD-20278004 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=riscv64 PACKAGEBUILD-20278004 Starting target for build PACKAGEBUILD-20278004 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=riscv64 PACKAGEBUILD-20278004 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20278004 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=riscv64 PACKAGEBUILD-20278004 Updating target for build PACKAGEBUILD-20278004 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main riscv64 Packages [1273 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe riscv64 Packages [11.9 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5330 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 Packages [179 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [85.0 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe riscv64 Packages [1795 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [655 kB] Fetched 22.3 MB in 34s (650 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libperl5.32 perl-modules-5.32 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-riscv64-linux-gnu coreutils cpp-10 fakeroot g++-10 gcc-10 gcc-10-base grep libapparmor1 libapt-pkg6.0 libatomic1 libaudit-common libaudit1 libbinutils libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libidn2-0 libip4tc2 liblocale-gettext-perl libmpc3 libncursesw6 libnpth0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libudev1 linux-libc-dev ncurses-base ncurses-bin perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils 64 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 52.8 MB of archives. After this operation, 42.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libcrypt-dev riscv64 1:4.4.17-1ubuntu1 [199 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libcrypt1 riscv64 1:4.4.17-1ubuntu1 [89.8 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main riscv64 base-files riscv64 11ubuntu16 [60.1 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 bash riscv64 5.1~rc2-1ubuntu1 [617 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 coreutils riscv64 8.32-4ubuntu1 [1252 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main riscv64 grep riscv64 3.6-1 [145 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libncursesw6 riscv64 6.2+20200918-1 [115 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libtinfo6 riscv64 6.2+20200918-1 [79.1 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 ncurses-bin riscv64 6.2+20200918-1 [167 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libtext-iconv-perl riscv64 1.7-7build1 [13.1 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libtext-charwidth-perl riscv64 0.04-10build1 [9480 B] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 perl-modules-5.32 all 5.32.0-4 [2753 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libperl5.32 riscv64 5.32.0-4 [3551 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 perl riscv64 5.32.0-4 [225 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 perl-base riscv64 5.32.0-4 [1469 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 liblocale-gettext-perl riscv64 1.07-4build1 [16.3 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libdebconfclient0 riscv64 0.255ubuntu1 [5648 B] Get:18 http://ftpmaster.internal/ubuntu hirsute/main riscv64 base-passwd riscv64 3.5.48 [45.9 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 ncurses-base all 6.2+20200918-1 [18.7 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main riscv64 sysvinit-utils riscv64 2.96-5ubuntu1 [19.5 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libcc1-0 riscv64 10.2.0-16ubuntu1 [38.2 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 gcc-10-base riscv64 10.2.0-16ubuntu1 [19.7 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libgcc-s1 riscv64 10.2.0-16ubuntu1 [40.4 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libgomp1 riscv64 10.2.0-16ubuntu1 [83.9 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libatomic1 riscv64 10.2.0-16ubuntu1 [7476 B] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 g++-10 riscv64 10.2.0-16ubuntu1 [7491 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libstdc++-10-dev riscv64 10.2.0-16ubuntu1 [3618 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libgcc-10-dev riscv64 10.2.0-16ubuntu1 [472 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 gcc-10 riscv64 10.2.0-16ubuntu1 [13.1 MB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 cpp-10 riscv64 10.2.0-16ubuntu1 [6521 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libstdc++6 riscv64 10.2.0-16ubuntu1 [508 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libmpc3 riscv64 1.2.0-1 [41.6 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libctf-nobfd0 riscv64 2.35.1-2ubuntu1 [41.5 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libctf0 riscv64 2.35.1-2ubuntu1 [40.4 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libbinutils riscv64 2.35.1-2ubuntu1 [289 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 binutils-common riscv64 2.35.1-2ubuntu1 [205 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 binutils riscv64 2.35.1-2ubuntu1 [3292 B] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.35.1-2ubuntu1 [676 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libgcrypt20 riscv64 1.8.7-2ubuntu1 [390 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 systemd-timesyncd riscv64 246.6-2ubuntu1 [25.7 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 systemd-sysv riscv64 246.6-2ubuntu1 [10.3 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libapparmor1 riscv64 3.0.0-0ubuntu3 [32.4 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:44 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libaudit1 riscv64 1:2.8.5-3ubuntu2 [37.6 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libcap2 riscv64 1:2.44-1 [15.5 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libcryptsetup12 riscv64 2:2.3.4-1ubuntu1 [167 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libidn2-0 riscv64 2.3.0-2 [50.2 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libip4tc2 riscv64 1.8.5-3ubuntu3 [17.2 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libseccomp2 riscv64 2.4.3-1ubuntu5 [37.9 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 systemd riscv64 246.6-2ubuntu1 [3724 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libsystemd0 riscv64 246.6-2ubuntu1 [246 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libudev1 riscv64 246.6-2ubuntu1 [60.5 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libapt-pkg6.0 riscv64 2.1.11 [805 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main riscv64 apt riscv64 2.1.11 [1239 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libselinux1 riscv64 3.1-2build1 [64.9 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libsemanage-common all 3.1-1build1 [10.1 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libsemanage1 riscv64 3.1-1build1 [75.6 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libtirpc-common all 1.2.6-3 [7444 B] Get:59 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libtirpc-dev riscv64 1.2.6-3 [270 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libtirpc3 riscv64 1.2.6-3 [68.4 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 readline-common all 8.1~rc2-2 [54.1 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libreadline8 riscv64 8.1~rc2-2 [119 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libfakeroot riscv64 1.25.3-1 [24.3 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 fakeroot riscv64 1.25.3-1 [66.6 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libnpth0 riscv64 1.6-3 [7052 B] Get:66 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 linux-libc-dev riscv64 5.8.0-26.27 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.8 MB in 10s (5191 kB/s) (Reading database ... 10910 files and directories currently installed.) 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Changing home-directory of irc from /var/run/ircd to /run/ircd 1 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 12827 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20200918-1_all.deb ... Unpacking ncurses-base (6.2+20200918-1) over (6.2-1) ... Setting up ncurses-base (6.2+20200918-1) ... (Reading database ... 12827 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-5ubuntu1_riscv64.deb ... Unpacking sysvinit-utils (2.96-5ubuntu1) over (2.96-3ubuntu1) ... Setting up sysvinit-utils (2.96-5ubuntu1) ... (Reading database ... 12827 files and directories currently installed.) Preparing to unpack .../libcc1-0_10.2.0-16ubuntu1_riscv64.deb ... Unpacking libcc1-0:riscv64 (10.2.0-16ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../gcc-10-base_10.2.0-16ubuntu1_riscv64.deb ... 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Setting up systemd (246.6-2ubuntu1) ... Setting up systemd-sysv (246.6-2ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20278004 riscv64 hirsute-proposed -c chroot:build-PACKAGEBUILD-20278004 --arch=riscv64 --dist=hirsute-proposed --nolog srst2_0.2.0-8.dsc Initiating build PACKAGEBUILD-20278004 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.4.0-36-generic #41-Ubuntu SMP Thu Oct 1 14:51:42 UTC 2020 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-076.buildd +==============================================================================+ | srst2 0.2.0-8 (riscv64) Tue, 10 Nov 2020 23:19:55 +0000 | +==============================================================================+ Package: srst2 Version: 0.2.0-8 Source Version: 0.2.0-8 Distribution: hirsute-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20278004/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/srst2-aoOBwp/resolver-NbeSI0' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- srst2_0.2.0-8.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/srst2-aoOBwp/srst2-0.2.0' with '<>' I: NOTICE: Log filtering will replace 'build/srst2-aoOBwp' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, markdown, dos2unix, python3-mock, python3-scipy, bowtie2, samtools, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, markdown, dos2unix, python3-mock, python3-scipy, bowtie2, samtools, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [434 B] Get:5 copy:/<>/apt_archive ./ Packages [510 B] Fetched 1901 B in 1s (3436 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: krb5-locales libgpm2 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bowtie2 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu67 libkrb5-26-heimdal liblapack3 liblbfgsb0 libldap-2.4-2 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db markdown mime-support po-debconf python3 python3-decorator python3-distutils python3-lib2to3 python3-minimal python3-mock python3-numpy python3-pbr python3-pkg-resources python3-scipy python3-setuptools python3-six python3.8 python3.8-minimal python3.9 python3.9-minimal samtools Suggested packages: autoconf-archive gnu-standards autoconf-doc bowtie2-examples dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-mock-doc gfortran python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python-scipy-doc python-setuptools-doc python3.8-venv python3.8-doc binfmt-support python3.9-venv python3.9-doc cwltool Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-pil The following NEW packages will be installed: autoconf automake autopoint autotools-dev bowtie2 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dos2unix dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu67 libkrb5-26-heimdal liblapack3 liblbfgsb0 libldap-2.4-2 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libpython3.9-minimal libpython3.9-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db markdown mime-support po-debconf python3 python3-decorator python3-distutils python3-lib2to3 python3-minimal python3-mock python3-numpy python3-pbr python3-pkg-resources python3-scipy python3-setuptools python3-six python3.8 python3.8-minimal python3.9 python3.9-minimal samtools sbuild-build-depends-main-dummy 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. 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7.72.0-1ubuntu1 [213 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/universe riscv64 libdeflate0 riscv64 1.6-1 [52.5 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 libgfortran5 riscv64 10.2.0-16ubuntu1 [332 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/universe riscv64 libhts3 riscv64 1.11-2 [318 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main riscv64 liblapack3 riscv64 3.9.0-3ubuntu1 [1654 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/universe riscv64 liblbfgsb0 riscv64 3.0+dfsg.3-9 [25.2 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main riscv64 libpython3.9-stdlib riscv64 3.9.0-5 [1636 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/universe riscv64 markdown all 1.0.1-10 [17.5 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main riscv64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main riscv64 python3.9 riscv64 3.9.0-5 [408 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 python3-numpy riscv64 1:1.19.4-1 [3075 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 python3-setuptools all 50.3.0-1 [451 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute-proposed/main riscv64 python3-six all 1.15.0-2 [12.0 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main riscv64 python3-pbr all 5.4.5-0ubuntu1 [64.0 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute-proposed/universe riscv64 samtools riscv64 1.11-1 [504 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/universe riscv64 bowtie2 riscv64 2.4.2-1 [1486 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/universe riscv64 dos2unix riscv64 7.4.1-1 [372 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/universe riscv64 python3-mock all 4.0.2-1 [28.4 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute-proposed/universe riscv64 python3-scipy riscv64 1.5.3-2 [13.3 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.3 MB in 11s (4290 kB/s) Selecting previously unselected package libpython3.8-minimal:riscv64. 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../76-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:riscv64 (1.5.3-1) ... Setting up libpsl5:riscv64 (0.21.0-1.1ubuntu1) ... Setting up mime-support (3.64ubuntu1) ... Setting up libicu67:riscv64 (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.66.2-1) ... No schema files found: doing nothing. Setting up libpython3.9-minimal:riscv64 (3.9.0-5) ... Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build1) ... Setting up libnghttp2-14:riscv64 (1.41.0-3) ... Setting up libmagic1:riscv64 (1:5.38-5) ... Setting up libdeflate0:riscv64 (1.6-1) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up libsasl2-modules-db:riscv64 (2.1.27+dfsg-2ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:riscv64 (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libncurses6:riscv64 (6.2+20200918-1) ... Setting up libsigsegv2:riscv64 (2.12-2build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libsasl2-2:riscv64 (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:riscv64 (0.9.4-1ubuntu3) ... Setting up libgfortran5:riscv64 (10.2.0-16ubuntu1) ... Setting up libroken18-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libuchardet0:riscv64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up dos2unix (7.4.1-1) ... Setting up python3.9-minimal (3.9.0-5) ... Setting up libpython3.8-stdlib:riscv64 (3.8.6-1) ... Setting up python3.8 (3.8.6-1) ... Setting up libelf1:riscv64 (0.182-1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-6.2) ... Setting up markdown (1.0.1-10) ... Setting up libpython3.9-stdlib:riscv64 (3.9.0-5) ... Setting up libpython3-stdlib:riscv64 (3.8.6-1) ... Setting up libheimbase1-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up liblapack3:riscv64 (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libtool (2.4.6-14) ... Setting up libasn1-8-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.6-1) ... Setting up libhcrypto4-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up bowtie2 (2.4.2-1) ... Setting up python3-six (1.15.0-2) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up libwind0-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up python3-lib2to3 (3.9.0-1) ... Setting up python3.9 (3.9.0-5) ... Setting up liblbfgsb0:riscv64 (3.0+dfsg.3-9) ... Setting up python3-pkg-resources (50.3.0-1) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.9.0-1) ... Setting up dh-python (4.20201102) ... Setting up gettext (0.19.8.1-10build1) ... Setting up python3-setuptools (50.3.0-1) ... Setting up python3-pbr (5.4.5-0ubuntu1) ... update-alternatives: using /usr/bin/python3-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up libhx509-5-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-mock (4.0.2-1) ... Setting up python3-numpy (1:1.19.4-1) ... Setting up libkrb5-26-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up python3-scipy (1.5.3-2) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libldap-2.4-2:riscv64 (2.4.53+dfsg-1ubuntu4) ... Setting up libcurl3-gnutls:riscv64 (7.72.0-1ubuntu1) ... Setting up libhts3:riscv64 (1.11-2) ... Setting up samtools (1.11-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-36-generic #41-Ubuntu SMP Thu Oct 1 14:51:42 UTC 2020 riscv64 (riscv64) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-16ubuntu1 gcc-10_10.2.0-16ubuntu1 libc6-dev_2.32-0ubuntu3 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 linux-libc-dev_5.8.0-26.27 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1~rc2-1ubuntu1 binutils_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 binutils-riscv64-linux-gnu_2.35.1-2ubuntu1 bowtie2_2.4.2-1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-16ubuntu1 cpp-9_9.3.0-18ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dos2unix_7.4.1-1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-16ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-16ubuntu1 gcc-10-base_10.2.0-16ubuntu1 gcc-8-base_8.4.0-4ubuntu1 gcc-9-base_9.3.0-18ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 krb5-locales_1.17-10 libacl1_2.2.53-8 libapparmor1_3.0.0-0ubuntu3 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libbinutils_2.35.1-2ubuntu1 libblas3_3.9.0-3ubuntu1 libblkid1_2.36-3ubuntu1 libbrotli1_1.0.9-2build1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu3 libc-dev-bin_2.32-0ubuntu3 libc6_2.32-0ubuntu3 libc6-dev_2.32-0ubuntu3 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcc1-0_10.2.0-16ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.1-2ubuntu1 libctf0_2.35.1-2ubuntu1 libcurl3-gnutls_7.72.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdeflate0_1.6-1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1 libffi7_3.3-4 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-16ubuntu1 libgcc-s1_10.2.0-16ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-16ubuntu1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-16ubuntu1 libgpg-error0_1.38-2 libgpm2_1.20.7-6 libgssapi-krb5-2_1.17-10 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed5_3.5.1+really3.5.1-2 libhogweed6_3.6-2 libhts3_1.11-2 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-4 libidn2-0_2.3.0-2 libip4tc2_1.8.5-3ubuntu3 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libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.2 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-26.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 markdown_1.0.1-10 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.36-3ubuntu1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.32.0-4 perl-base_5.32.0-4 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 python3_3.8.6-1 python3-decorator_4.4.2-0ubuntu1 python3-distutils_3.9.0-1 python3-lib2to3_3.9.0-1 python3-minimal_3.8.6-1 python3-mock_4.0.2-1 python3-numpy_1:1.19.4-1 python3-pbr_5.4.5-0ubuntu1 python3-pkg-resources_50.3.0-1 python3-scipy_1.5.3-2 python3-setuptools_50.3.0-1 python3-six_1.15.0-2 python3.8_3.8.6-1 python3.8-minimal_3.8.6-1 python3.9_3.9.0-5 python3.9-minimal_3.9.0-5 readline-common_8.1~rc2-2 rpcsvc-proto_1.4.2-0ubuntu4 samtools_1.11-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-2ubuntu1 systemd-sysv_246.6-2ubuntu1 systemd-timesyncd_246.6-2ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: srst2 Binary: srst2 Architecture: any Version: 0.2.0-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://katholt.github.io/srst2/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/srst2 Vcs-Git: https://salsa.debian.org/med-team/srst2.git Testsuite: autopkgtest Testsuite-Triggers: python3-mock Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, markdown, dos2unix, python3-mock , python3-scipy , bowtie2 , samtools Package-List: srst2 deb science optional arch=any Checksums-Sha1: b10c53e3a16271e4506ce253200410884b02679a 1380071 srst2_0.2.0.orig.tar.gz 7d7738e970452dde40c43d6421996bdf9c560384 17800 srst2_0.2.0-8.debian.tar.xz Checksums-Sha256: 352c59bdf00039dfa5610a4b88049a0eb114d7c2a305d4924b6e605cc6d15123 1380071 srst2_0.2.0.orig.tar.gz b45929f430989a154570990e877d8ab623d23afab44179407df76125644bb009 17800 srst2_0.2.0-8.debian.tar.xz Files: ef447fc394d2f60adc2a32edd6ebe374 1380071 srst2_0.2.0.orig.tar.gz 0c079735084b8b7a235ffe6844ca4e6f 17800 srst2_0.2.0-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+qt+4RHHRpbGxlQGRl 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./srst2_0.2.0-8.dsc dpkg-source: info: extracting srst2 in /<> dpkg-source: info: unpacking srst2_0.2.0.orig.tar.gz dpkg-source: info: unpacking srst2_0.2.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying check_command_line_arguments.patch dpkg-source: info: applying add_usr_bin_python_to_scripts.patch dpkg-source: info: applying fix_test.patch dpkg-source: info: applying fix_grep_call.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying biopython-1.78.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20278004 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20278004 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20278004 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package srst2 dpkg-buildpackage: info: source version 0.2.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.8 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.8/build' (and everything under it) /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'entry_points' warnings.warn(msg) /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.8 setup.py config running config /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'entry_points' warnings.warn(msg) /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.8/build/srst2 copying scripts/version.py -> /<>/.pybuild/cpython3_3.8/build/srst2 copying scripts/__init__.py -> /<>/.pybuild/cpython3_3.8/build/srst2 copying scripts/srst2.py -> /<>/.pybuild/cpython3_3.8/build/srst2 copying scripts/getmlst.py -> /<>/.pybuild/cpython3_3.8/build/srst2 copying scripts/qsub_srst2.py -> /<>/.pybuild/cpython3_3.8/build/srst2 copying scripts/consensus_alignment.py -> /<>/.pybuild/cpython3_3.8/build/srst2 copying scripts/analyseSRST2.py -> /<>/.pybuild/cpython3_3.8/build/srst2 copying scripts/slurm_srst2.py -> /<>/.pybuild/cpython3_3.8/build/srst2 running build_scripts creating build creating build/scripts-3.8 copying and adjusting scripts/getmlst.py -> build/scripts-3.8 copying and adjusting scripts/slurm_srst2.py -> build/scripts-3.8 changing mode of build/scripts-3.8/getmlst.py from 644 to 755 changing mode of build/scripts-3.8/slurm_srst2.py from 644 to 755 /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'entry_points' warnings.warn(msg) /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) markdown README.md > README.html markdown database_clustering/README.md > database_clustering_README.html make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /<>/debian/srst2 running install running build running build_py running build_scripts running install_lib creating /<>/debian/srst2/usr creating /<>/debian/srst2/usr/lib creating /<>/debian/srst2/usr/lib/python3.8 creating /<>/debian/srst2/usr/lib/python3.8/dist-packages creating /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 copying /<>/.pybuild/cpython3_3.8/build/srst2/version.py -> /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 copying /<>/.pybuild/cpython3_3.8/build/srst2/__init__.py -> /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 copying /<>/.pybuild/cpython3_3.8/build/srst2/srst2.py -> /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 copying /<>/.pybuild/cpython3_3.8/build/srst2/getmlst.py -> /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 copying /<>/.pybuild/cpython3_3.8/build/srst2/qsub_srst2.py -> /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 copying /<>/.pybuild/cpython3_3.8/build/srst2/consensus_alignment.py -> /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 copying /<>/.pybuild/cpython3_3.8/build/srst2/analyseSRST2.py -> /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 copying /<>/.pybuild/cpython3_3.8/build/srst2/slurm_srst2.py -> /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2 byte-compiling /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2/version.py to version.cpython-38.pyc byte-compiling /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2/srst2.py to srst2.cpython-38.pyc byte-compiling /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2/getmlst.py to getmlst.cpython-38.pyc byte-compiling /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2/qsub_srst2.py to qsub_srst2.cpython-38.pyc byte-compiling /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2/consensus_alignment.py to consensus_alignment.cpython-38.pyc byte-compiling /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2/analyseSRST2.py to analyseSRST2.cpython-38.pyc byte-compiling /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2/slurm_srst2.py to slurm_srst2.cpython-38.pyc running install_scripts creating /<>/debian/srst2/usr/bin copying build/scripts-3.8/getmlst.py -> /<>/debian/srst2/usr/bin copying build/scripts-3.8/slurm_srst2.py -> /<>/debian/srst2/usr/bin changing mode of /<>/debian/srst2/usr/bin/getmlst.py to 755 changing mode of /<>/debian/srst2/usr/bin/slurm_srst2.py to 755 running install_egg_info Writing /<>/debian/srst2/usr/lib/python3.8/dist-packages/srst2-0.2.0.egg-info /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'entry_points' warnings.warn(msg) /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mv debian/srst2/usr/lib/*/dist-packages/srst2/* debian/srst2/usr/share/srst2 rm -rf debian/*/usr/bin/*.py debian/srst2/usr/lib/*/dist-packages/ # fix line endings to make sure Python3 interpreter will be found find debian/*/usr/share -name "VFDB*" -exec dos2unix \{\} \; dos2unix: converting file debian/srst2/usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py to Unix format... dos2unix: converting file debian/srst2/usr/share/srst2/database_clustering/VFDBgenus.py to Unix format... sed -i '1s:^#!/usr/local.*python[.0-9]*$:#!/usr/bin/python3:' debian/srst2/usr/share/srst2/qsub_srst2.py find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs sed -i "s?sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__).*scripts.*?sys.path.append(os.path.abspath('/usr/share/srst2'))?" debian/srst2/usr/share/doc/srst2/tests/*.py make[1]: Leaving directory '/<>' dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms chmod +x debian/srst2/usr/share/srst2/database_clustering/get_genus_vfdb.sh chmod +x debian/srst2/usr/share/srst2/database_clustering/get_all_vfdb.sh chmod -x debian/srst2/usr/share/srst2/database_clustering/align_plot_tree_min3.py for py in `find debian -name "*.py"` ; do \ if head -n 1 $py | grep -q '^#! */usr/bin/.*python' ; then chmod +x $py ; fi ; \ done make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 146 pkgstriptranslations: processing srst2 (in debian/srst2); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/srst2/DEBIAN/control, package srst2, directory debian/srst2 pkgstripfiles: Running PNG optimization (using 8 cpus) for package srst2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'srst2' in '../srst2_0.2.0-8_riscv64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../srst2_0.2.0-8_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-10T23:28:31Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ srst2_0.2.0-8_riscv64.changes: ------------------------------ Format: 1.8 Date: Tue, 10 Nov 2020 15:50:29 +0100 Source: srst2 Binary: srst2 Architecture: riscv64 Version: 0.2.0-8 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: srst2 - Short Read Sequence Typing for Bacterial Pathogens Changes: srst2 (0.2.0-8) unstable; urgency=medium . [ Étienne Mollier ] * Add myself to Uploaders. * Add patch biopython-1.78 for compatibility with Bio.Alphabet removal. * Bump watch file to version 4. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. . [ Andreas Tille ] * Restrict test architectures to those where bowtie2 is available Checksums-Sha1: f59ccd7929a1ab261f0be759c4756a4fb4c8ede8 7051 srst2_0.2.0-8_riscv64.buildinfo 49e7f90904f34ccbfaeff41d76243d4f95caa481 60920 srst2_0.2.0-8_riscv64.deb Checksums-Sha256: 697116ebdb0c6fa0d3d6a9a6dfcf5f51b36397851fe424d415acb0780a6c548f 7051 srst2_0.2.0-8_riscv64.buildinfo 8e59cb048b6fa2e818dc3ccc337f73a231f08aaef2a3790765b14c72394fb29f 60920 srst2_0.2.0-8_riscv64.deb Files: c1f79456f40e0a94bc0f3d4319cd3332 7051 science optional srst2_0.2.0-8_riscv64.buildinfo a173f60980ca89917d4ea13476c2fd8a 60920 science optional srst2_0.2.0-8_riscv64.deb /<>/srst2_0.2.0-8_riscv64.changes.new could not be renamed to /<>/srst2_0.2.0-8_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: srst2 Binary: srst2 Architecture: riscv64 Version: 0.2.0-8 Checksums-Md5: a173f60980ca89917d4ea13476c2fd8a 60920 srst2_0.2.0-8_riscv64.deb Checksums-Sha1: 49e7f90904f34ccbfaeff41d76243d4f95caa481 60920 srst2_0.2.0-8_riscv64.deb Checksums-Sha256: 8e59cb048b6fa2e818dc3ccc337f73a231f08aaef2a3790765b14c72394fb29f 60920 srst2_0.2.0-8_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Tue, 10 Nov 2020 23:28:26 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1~rc2-1ubuntu1), binutils (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), binutils-riscv64-linux-gnu (= 2.35.1-2ubuntu1), bowtie2 (= 2.4.2-1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-16ubuntu1), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-python (= 4.20201102), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dos2unix (= 7.4.1-1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-16ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-16ubuntu1), gcc-10-base (= 10.2.0-16ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.2.0-16ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-2ubuntu1), libblas3 (= 3.9.0-3ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbrotli1 (= 1.0.9-2build1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu3), libc-dev-bin (= 2.32-0ubuntu3), libc6 (= 2.32-0ubuntu3), libc6-dev (= 2.32-0ubuntu3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-16ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-2ubuntu1), libctf0 (= 2.35.1-2ubuntu1), libcurl3-gnutls (= 7.72.0-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.255ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdeflate0 (= 1.6-1), libdpkg-perl (= 1.20.5ubuntu2), libelf1 (= 0.182-1), libexpat1 (= 2.2.10-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-16ubuntu1), libgcc-s1 (= 10.2.0-16ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran5 (= 10.2.0-16ubuntu1), libglib2.0-0 (= 2.66.2-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.0-16ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhts3 (= 1.11-2), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-2), libisl22 (= 0.22.1-1), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), liblapack3 (= 3.9.0-3ubuntu1), liblbfgsb0 (= 3.0+dfsg.3-9), libldap-2.4-2 (= 2.4.53+dfsg-1ubuntu4), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20200918-1), libncursesw6 (= 6.2+20200918-1), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.41.0-3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libnss-nis (= 3.1-0ubuntu4), libnss-nisplus (= 1.3-0ubuntu4), libp11-kit0 (= 0.23.21-2build1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-4), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.1ubuntu1), libpython3-stdlib (= 3.8.6-1), libpython3.8-minimal (= 3.8.6-1), libpython3.8-stdlib (= 3.8.6-1), libpython3.9-minimal (= 3.9.0-5), libpython3.9-stdlib (= 3.9.0-5), libreadline8 (= 8.1~rc2-2), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libsqlite3-0 (= 3.33.0-1), libssh-4 (= 0.9.4-1ubuntu3), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-16ubuntu1), libstdc++6 (= 10.2.0-16ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-2ubuntu1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-2ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libwind0-heimdal (= 7.7.0+dfsg-2), libxml2 (= 2.9.10+dfsg-6.2), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-26.27), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), markdown (= 1.0.1-10), mawk (= 1.3.4.20200120-2), mime-support (= 3.64ubuntu1), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), patch (= 2.7.6-6), perl (= 5.32.0-4), perl-base (= 5.32.0-4), perl-modules-5.32 (= 5.32.0-4), po-debconf (= 1.0.21), python3 (= 3.8.6-1), python3-decorator (= 4.4.2-0ubuntu1), python3-distutils (= 3.9.0-1), python3-lib2to3 (= 3.9.0-1), python3-minimal (= 3.8.6-1), python3-mock (= 4.0.2-1), python3-numpy (= 1:1.19.4-1), python3-pbr (= 5.4.5-0ubuntu1), python3-pkg-resources (= 50.3.0-1), python3-scipy (= 1.5.3-2), python3-setuptools (= 50.3.0-1), python3-six (= 1.15.0-2), python3.8 (= 3.8.6-1), python3.8-minimal (= 3.8.6-1), python3.9 (= 3.9.0-5), python3.9-minimal (= 3.9.0-5), readline-common (= 8.1~rc2-2), rpcsvc-proto (= 1.4.2-0ubuntu4), samtools (= 1.11-1), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605019829" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ srst2_0.2.0-8_riscv64.deb ------------------------- new Debian package, version 2.0. size 60920 bytes: control archive=1968 bytes. 701 bytes, 15 lines control 2257 bytes, 31 lines md5sums 267 bytes, 12 lines * postinst #!/bin/sh 384 bytes, 12 lines * prerm #!/bin/sh Package: srst2 Version: 0.2.0-8 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 254 Depends: python3:any, bowtie2, cd-hit, samtools, python3-scipy, python3-biopython Recommends: python3-rpy2 Section: science Priority: optional Homepage: https://katholt.github.io/srst2/ Description: Short Read Sequence Typing for Bacterial Pathogens This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes. drwxr-xr-x root/root 0 2020-11-10 14:50 ./ drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/ drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/bin/ lrwxrwxrwx root/root 0 2020-11-10 14:50 ./usr/bin/VFDB_cdhit_to_csv -> ../share/srst2/database_clustering/VFDB_cdhit_to_csv.py lrwxrwxrwx root/root 0 2020-11-10 14:50 ./usr/bin/VFDBgenus -> ../share/srst2/database_clustering/VFDBgenus.py lrwxrwxrwx root/root 0 2020-11-10 14:50 ./usr/bin/csv_to_gene_db -> ../share/srst2/database_clustering/csv_to_gene_db.py lrwxrwxrwx root/root 0 2020-11-10 14:50 ./usr/bin/get_all_vfdb -> ../share/srst2/database_clustering/get_all_vfdb.sh lrwxrwxrwx root/root 0 2020-11-10 14:50 ./usr/bin/get_genus_vfdb -> ../share/srst2/database_clustering/get_genus_vfdb.sh lrwxrwxrwx root/root 0 2020-11-10 14:50 ./usr/bin/getmlst -> ../share/srst2/getmlst.py lrwxrwxrwx root/root 0 2020-11-10 14:50 ./usr/bin/slurm_srst2 -> ../share/srst2/slurm_srst2.py lrwxrwxrwx root/root 0 2020-11-10 14:50 ./usr/bin/srst2 -> ../share/srst2/srst2.py drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/ drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/doc-base/ -rw-r--r-- root/root 530 2020-11-10 14:50 ./usr/share/doc-base/srst2 drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/doc/srst2/ -rw-r--r-- root/root 72441 2020-11-10 14:50 ./usr/share/doc/srst2/README.html -rw-r--r-- root/root 1033 2020-11-10 14:50 ./usr/share/doc/srst2/changelog.Debian.gz -rw-r--r-- root/root 2022 2020-11-10 14:50 ./usr/share/doc/srst2/copyright -rw-r--r-- root/root 2333 2016-07-30 05:14 ./usr/share/doc/srst2/example.txt.gz drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/doc/srst2/tests/ -rw-r--r-- root/root 788 2020-11-10 14:50 ./usr/share/doc/srst2/tests/test_slurm_srst2.py.gz -rw-r--r-- root/root 1499 2020-11-10 14:50 ./usr/share/doc/srst2/tests/test_srst2.py.gz drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/man/man1/ -rw-r--r-- root/root 560 2020-11-10 14:50 ./usr/share/man/man1/VFDB_cdhit_to_csv.1.gz -rw-r--r-- root/root 555 2020-11-10 14:50 ./usr/share/man/man1/VFDBgenus.1.gz -rw-r--r-- root/root 784 2020-11-10 14:50 ./usr/share/man/man1/csv_to_gene_db.1.gz -rw-r--r-- root/root 413 2020-11-10 14:50 ./usr/share/man/man1/get_all_vfdb.1.gz -rw-r--r-- root/root 435 2020-11-10 14:50 ./usr/share/man/man1/get_genus_vfdb.1.gz -rw-r--r-- root/root 826 2020-11-10 14:50 ./usr/share/man/man1/getmlst.1.gz -rw-r--r-- root/root 795 2020-11-10 14:50 ./usr/share/man/man1/slurm_srst2.1.gz -rw-r--r-- root/root 2279 2020-11-10 14:50 ./usr/share/man/man1/srst2.1.gz drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/python3/ drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/python3/runtime.d/ -rwxr-xr-x root/root 125 2020-11-10 14:50 ./usr/share/python3/runtime.d/srst2.rtupdate drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/srst2/ -rw-r--r-- root/root 2 2016-07-30 05:14 ./usr/share/srst2/__init__.py -rwxr-xr-x root/root 11531 2020-11-10 14:50 ./usr/share/srst2/analyseSRST2.py -rw-r--r-- root/root 2015 2020-11-10 14:50 ./usr/share/srst2/consensus_alignment.py drwxr-xr-x root/root 0 2020-11-10 14:50 ./usr/share/srst2/database_clustering/ -rwxr-xr-x root/root 2041 2020-11-10 14:50 ./usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py -rwxr-xr-x root/root 1425 2020-11-10 14:50 ./usr/share/srst2/database_clustering/VFDBgenus.py -rw-r--r-- root/root 1883 2020-11-10 14:50 ./usr/share/srst2/database_clustering/align_plot_tree_min3.py -rw-r--r-- root/root 4191 2016-07-30 05:14 ./usr/share/srst2/database_clustering/cdhit_to_csv.py -rwxr-xr-x root/root 3750 2020-11-10 14:50 ./usr/share/srst2/database_clustering/csv_to_gene_db.py -rwxr-xr-x root/root 1952 2020-11-10 14:50 ./usr/share/srst2/database_clustering/get_all_vfdb.sh -rwxr-xr-x root/root 1597 2020-11-10 14:50 ./usr/share/srst2/database_clustering/get_genus_vfdb.sh -rwxr-xr-x root/root 7183 2020-11-10 14:50 ./usr/share/srst2/getmlst.py -rwxr-xr-x root/root 11123 2020-11-10 14:50 ./usr/share/srst2/qsub_srst2.py -rwxr-xr-x root/root 11081 2020-11-10 14:50 ./usr/share/srst2/slurm_srst2.py -rwxr-xr-x root/root 71949 2020-11-10 14:50 ./usr/share/srst2/srst2.py -rw-r--r-- root/root 330 2016-07-30 05:14 ./usr/share/srst2/version.py +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 9796 Build-Time: 132 Distribution: hirsute-proposed Host Architecture: riscv64 Install-Time: 356 Job: srst2_0.2.0-8.dsc Machine Architecture: riscv64 Package: srst2 Package-Time: 516 Source-Version: 0.2.0-8 Space: 9796 Status: successful Version: 0.2.0-8 -------------------------------------------------------------------------------- Finished at 2020-11-10T23:28:31Z Build needed 00:08:36, 9796k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=riscv64 PACKAGEBUILD-20278004 Scanning for processes to kill in build PACKAGEBUILD-20278004 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=hirsute --arch=riscv64 PACKAGEBUILD-20278004 Stopping target for build PACKAGEBUILD-20278004 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=hirsute --arch=riscv64 PACKAGEBUILD-20278004 Removing build PACKAGEBUILD-20278004