RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux roseapple 3.2.0-61-generic #93-Ubuntu SMP Fri May 2 21:31:50 UTC 2014 x86_64 Buildd toolchain package versions: launchpad-buildd_122~0.IS.8.04 python-lpbuildd_122~0.IS.8.04 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.5. Syncing the system clock with the buildd NTP service... 20 Jun 05:15:05 ntpdate[7332]: adjust time server 10.211.37.1 offset 0.000006 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6115399', '/home/buildd/filecache-default/e89b6bc831aace6553dde664832b8921d9d74e63'] Unpacking chroot for build PACKAGEBUILD-6115399 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6115399'] Mounting chroot for build PACKAGEBUILD-6115399 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6115399', 'deb http://ftpmaster.internal/ubuntu utopic main universe', 'deb http://ftpmaster.internal/ubuntu utopic-security main universe', 'deb http://ftpmaster.internal/ubuntu utopic-updates main universe', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6115399 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6115399', 'amd64'] Updating debian chroot for build PACKAGEBUILD-6115399 Ign http://archive-team.internal utopic InRelease Ign http://archive-team.internal utopic Release.gpg Get:1 http://archive-team.internal utopic Release [730 B] Ign http://ftpmaster.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://ftpmaster.internal utopic-updates InRelease Ign http://ftpmaster.internal utopic-proposed InRelease Get:2 http://ftpmaster.internal utopic Release.gpg [933 B] Get:3 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:4 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal utopic Release [58.5 kB] Get:7 http://ftpmaster.internal utopic-security Release [58.5 kB] Get:8 http://ftpmaster.internal utopic-updates Release [58.5 kB] Get:9 http://archive-team.internal utopic/main amd64 Packages Get:10 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Ign http://archive-team.internal utopic/main Translation-en Get:11 http://ftpmaster.internal utopic/main amd64 Packages [1365 kB] Get:12 http://ftpmaster.internal utopic/universe amd64 Packages [6065 kB] Get:13 http://ftpmaster.internal utopic/main Translation-en [769 kB] Get:14 http://ftpmaster.internal utopic/universe Translation-en [4214 kB] Get:15 http://ftpmaster.internal utopic-security/main amd64 Packages [14 B] Get:16 http://ftpmaster.internal utopic-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal utopic-updates/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal utopic-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal utopic-proposed/main amd64 Packages [47.3 kB] Get:24 http://ftpmaster.internal utopic-proposed/universe amd64 Packages [346 kB] Get:25 http://ftpmaster.internal utopic-proposed/main Translation-en [21.3 kB] Get:26 http://ftpmaster.internal utopic-proposed/universe Translation-en [180 kB] Fetched 13.2 MB in 4s (3120 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgnutls28 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: init-system-helpers libgnutls-deb0-28 The following packages will be upgraded: apt apt-transport-https bash binutils bsdutils busybox-initramfs ca-certificates cpp cpp-4.8 dpkg dpkg-dev e2fslibs e2fsprogs fakeroot g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gcc-4.9-base hostname ifupdown initramfs-tools initramfs-tools-bin initscripts kmod libapt-pkg4.12 libasan0 libasn1-8-heimdal libatomic1 libblkid1 libcgmanager0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdpkg-perl libdrm2 libfakeroot libffi6 libgcc-4.8-dev libgcc1 libgmp10 libgnutls26 libgnutls28 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkmod2 libkrb5-26-heimdal libmount1 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth2 libpng12-0 libprocps3 libquadmath0 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsepol1 libss2 libssl1.0.0 libstdc++-4.8-dev libstdc++6 libtasn1-6 libtsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make module-init-tools mount mountall openssl optipng passwd perl perl-base perl-modules plymouth procps sysv-rc sysvinit-utils tzdata udev upstart util-linux 100 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 45.1 MB of archives. After this operation, 4244 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main bash amd64 4.3-7ubuntu3 [576 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main dpkg amd64 1.17.10ubuntu1 [2008 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main e2fslibs amd64 1.42.10-1ubuntu1 [184 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main e2fsprogs amd64 1.42.10-1ubuntu1 [678 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libselinux1 amd64 2.3-1 [58.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main init-system-helpers all 1.19 [12.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main plymouth amd64 0.8.8-0ubuntu18 [101 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main libplymouth2 amd64 0.8.8-0ubuntu18 [77.3 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools-bin amd64 0.103ubuntu7 [9038 B] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools all 0.103ubuntu7 [44.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main mountall amd64 2.54 [55.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main upstart amd64 1.12.1-0ubuntu8 [390 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main lsb-base all 4.1+Debian11ubuntu8 [13.1 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main initscripts amd64 2.88dsf-41ubuntu16 [35.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main sysv-rc all 2.88dsf-41ubuntu16 [37.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main sysvinit-utils amd64 2.88dsf-41ubuntu16 [51.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main libdbus-1-3 amd64 1.6.18-0ubuntu8 [132 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main libnih-dbus1 amd64 1.0.3-4ubuntu26 [14.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main libnih1 amd64 1.0.3-4ubuntu26 [48.2 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libpam0g amd64 1.1.8-3ubuntu1 [57.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage-common all 2.3-1 [6278 B] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage1 amd64 2.3-1 [70.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libsepol1 amd64 2.3-1 [108 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules-bin amd64 1.1.8-3ubuntu1 [31.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules amd64 1.1.8-3ubuntu1 [236 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main passwd amd64 1:4.1.5.1-1.1ubuntu1 [755 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libuuid1 amd64 2.20.1-5.1ubuntu21 [11.0 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main libblkid1 amd64 2.20.1-5.1ubuntu21 [62.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libcgmanager0 amd64 0.26-0ubuntu3 [28.5 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 amd64 16-2ubuntu4 [37.8 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main tzdata all 2014e-1 [190 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main util-linux amd64 2.20.1-5.1ubuntu21 [458 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/main libprocps3 amd64 1:3.3.9-1ubuntu5 [31.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main procps amd64 1:3.3.9-1ubuntu5 [210 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main udev amd64 204-10ubuntu9 [735 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main libudev1 amd64 204-10ubuntu9 [34.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main perl-modules all 5.18.2-4 [2691 kB] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main perl amd64 5.18.2-4 [2654 kB] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main perl-base amd64 5.18.2-4 [1149 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main busybox-initramfs amd64 1:1.22.0-6ubuntu1 [174 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main kmod amd64 16-2ubuntu4 [84.8 kB] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 16-2ubuntu4 [2084 B] Get:43 http://ftpmaster.internal/ubuntu/ utopic/main libdrm2 amd64 2.4.54-1 [23.0 kB] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main libpng12-0 amd64 1.2.50-1ubuntu3 [118 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main ifupdown amd64 0.7.48.1ubuntu4 [50.8 kB] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main mount amd64 2.20.1-5.1ubuntu21 [115 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main hostname amd64 3.15ubuntu2 [11.7 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main login amd64 1:4.1.5.1-1.1ubuntu1 [301 kB] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main libitm1 amd64 4.9.0-7ubuntu2 [30.0 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main libgomp1 amd64 4.9.0-7ubuntu2 [37.1 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.9-base amd64 4.9.0-7ubuntu2 [15.3 kB] Get:52 http://ftpmaster.internal/ubuntu/ utopic/main libgcc1 amd64 1:4.9.0-7ubuntu2 [39.6 kB] Get:53 http://ftpmaster.internal/ubuntu/ utopic/main libtsan0 amd64 4.9.0-7ubuntu2 [216 kB] Get:54 http://ftpmaster.internal/ubuntu/ utopic/main libquadmath0 amd64 4.9.0-7ubuntu2 [130 kB] Get:55 http://ftpmaster.internal/ubuntu/ utopic/main libatomic1 amd64 4.9.0-7ubuntu2 [9262 B] Get:56 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++6 amd64 4.9.0-7ubuntu2 [276 kB] Get:57 http://ftpmaster.internal/ubuntu/ utopic/main libapt-pkg4.12 amd64 1.0.4ubuntu4 [646 kB] Get:58 http://ftpmaster.internal/ubuntu/ utopic/main apt amd64 1.0.4ubuntu4 [960 kB] Get:59 http://ftpmaster.internal/ubuntu/ utopic/main bsdutils amd64 1:2.20.1-5.1ubuntu21 [33.9 kB] Get:60 http://ftpmaster.internal/ubuntu/ utopic/main libcomerr2 amd64 1.42.10-1ubuntu1 [63.5 kB] Get:61 http://ftpmaster.internal/ubuntu/ utopic/main libdebconfclient0 amd64 0.191ubuntu1 [6208 B] Get:62 http://ftpmaster.internal/ubuntu/ utopic/main libmount1 amd64 2.20.1-5.1ubuntu21 [60.6 kB] Get:63 http://ftpmaster.internal/ubuntu/ utopic/main libss2 amd64 1.42.10-1ubuntu1 [67.7 kB] Get:64 http://ftpmaster.internal/ubuntu/ utopic/main libffi6 amd64 3.1-2 [17.4 kB] Get:65 http://ftpmaster.internal/ubuntu/ utopic/main libgmp10 amd64 2:6.0.0+dfsg-4 [223 kB] Get:66 http://ftpmaster.internal/ubuntu/ utopic/main libtasn1-6 amd64 3.6-3 [43.5 kB] Get:67 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls28 amd64 3.2.15-1 [486 kB] Get:68 http://ftpmaster.internal/ubuntu/ utopic/main libssl1.0.0 amd64 1.0.1f-1ubuntu5 [829 kB] Get:69 http://ftpmaster.internal/ubuntu/ utopic/main libroken18-heimdal amd64 1.6~rc2+dfsg-7 [40.8 kB] Get:70 http://ftpmaster.internal/ubuntu/ utopic/main libasn1-8-heimdal amd64 1.6~rc2+dfsg-7 [173 kB] Get:71 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgnutls-deb0-28 amd64 3.2.15-2 [486 kB] Get:72 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3-gnutls amd64 7.36.0-2ubuntu2 [165 kB] Get:73 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls26 amd64 2.12.23-15ubuntu2 [393 kB] Get:74 http://ftpmaster.internal/ubuntu/ utopic/main libhcrypto4-heimdal amd64 1.6~rc2+dfsg-7 [85.4 kB] Get:75 http://ftpmaster.internal/ubuntu/ utopic/main libheimbase1-heimdal amd64 1.6~rc2+dfsg-7 [29.7 kB] Get:76 http://ftpmaster.internal/ubuntu/ utopic/main libwind0-heimdal amd64 1.6~rc2+dfsg-7 [48.0 kB] Get:77 http://ftpmaster.internal/ubuntu/ utopic/main libhx509-5-heimdal amd64 1.6~rc2+dfsg-7 [105 kB] Get:78 http://ftpmaster.internal/ubuntu/ utopic/main libkrb5-26-heimdal amd64 1.6~rc2+dfsg-7 [199 kB] Get:79 http://ftpmaster.internal/ubuntu/ utopic/main libheimntlm0-heimdal amd64 1.6~rc2+dfsg-7 [15.1 kB] Get:80 http://ftpmaster.internal/ubuntu/ utopic/main libgssapi3-heimdal amd64 1.6~rc2+dfsg-7 [92.7 kB] Get:81 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 amd64 4.8.3-3ubuntu3 [7039 kB] Get:82 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 amd64 4.8.3-3ubuntu3 [5019 kB] Get:83 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 amd64 4.8.3-3ubuntu3 [4443 kB] Get:84 http://ftpmaster.internal/ubuntu/ utopic/main binutils amd64 2.24.51.20140617-1ubuntu1 [2092 kB] Get:85 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev amd64 4.8.3-3ubuntu3 [1053 kB] Get:86 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev amd64 4.8.3-3ubuntu3 [1687 kB] Get:87 http://ftpmaster.internal/ubuntu/ utopic/main libasan0 amd64 4.8.3-3ubuntu3 [63.4 kB] Get:88 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base amd64 4.8.3-3ubuntu3 [14.7 kB] Get:89 http://ftpmaster.internal/ubuntu/ utopic/main libpam-runtime all 1.1.8-3ubuntu1 [39.7 kB] Get:90 http://ftpmaster.internal/ubuntu/ utopic/main apt-transport-https amd64 1.0.4ubuntu4 [25.2 kB] Get:91 http://ftpmaster.internal/ubuntu/ utopic/main openssl amd64 1.0.1f-1ubuntu5 [489 kB] Get:92 http://ftpmaster.internal/ubuntu/ utopic/main ca-certificates all 20140325 [184 kB] Get:93 http://ftpmaster.internal/ubuntu/ utopic/main cpp amd64 4:4.9.0-3ubuntu5 [27.7 kB] Get:94 http://ftpmaster.internal/ubuntu/ utopic/main dpkg-dev all 1.17.10ubuntu1 [714 kB] Get:95 http://ftpmaster.internal/ubuntu/ utopic/main libdpkg-perl all 1.17.10ubuntu1 [181 kB] Get:96 http://ftpmaster.internal/ubuntu/ utopic/main make amd64 4.0-8 [148 kB] Get:97 http://ftpmaster.internal/ubuntu/ utopic/main libfakeroot amd64 1.20-3ubuntu3 [25.4 kB] Get:98 http://ftpmaster.internal/ubuntu/ utopic/main fakeroot amd64 1.20-3ubuntu3 [55.4 kB] Get:99 http://ftpmaster.internal/ubuntu/ utopic/main gcc amd64 4:4.9.0-3ubuntu5 [5306 B] Get:100 http://ftpmaster.internal/ubuntu/ utopic/main g++ amd64 4:4.9.0-3ubuntu5 [1604 B] Get:101 http://ftpmaster.internal/ubuntu/ utopic/main linux-libc-dev amd64 3.15.0-6.11 [761 kB] Get:102 http://ftpmaster.internal/ubuntu/ utopic/main optipng amd64 0.7.5-1 [82.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.1 MB in 1s (30.4 MB/s) (Reading database ... 11820 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu3_amd64.deb ... Unpacking bash (4.3-7ubuntu3) over (4.3-7ubuntu1) ... Setting up bash (4.3-7ubuntu3) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11820 files and directories currently installed.) Preparing to unpack .../dpkg_1.17.10ubuntu1_amd64.deb ... Unpacking dpkg (1.17.10ubuntu1) over (1.17.9ubuntu1) ... Setting up dpkg (1.17.10ubuntu1) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 11820 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.10-1ubuntu1_amd64.deb ... Unpacking e2fslibs:amd64 (1.42.10-1ubuntu1) over (1.42.9-3ubuntu1) ... Setting up e2fslibs:amd64 (1.42.10-1ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11820 files and directories currently installed.) 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Setting up mountall (2.54) ... Installing new version of config file /etc/init/mounted-proc.conf ... Setting up perl-modules (5.18.2-4) ... Setting up initscripts (2.88dsf-41ubuntu16) ... Installing new version of config file /etc/init.d/ondemand ... Setting up procps (1:3.3.9-1ubuntu5) ... Installing new version of config file /etc/init/procps.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (204-10ubuntu9) ... Installing new version of config file /etc/init/udev-finish.conf ... Installing new version of config file /etc/init.d/udev ... invoke-rc.d: policy-rc.d denied execution of restart. update-initramfs: deferring update (trigger activated) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev-finish Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev-finish Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match lvm2 Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match lvm2 Default-Stop values (none) Setting up perl (5.18.2-4) ... Setting up init-system-helpers (1.19) ... Setting up initramfs-tools (0.103ubuntu7) ... update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.48.1ubuntu4) ... Installing new version of config file /etc/init/network-interface.conf ... update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match networking Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match networking Default-Stop values (0 6) Setting up upstart (1.12.1-0ubuntu8) ... Installing new version of config file /etc/upstart-xsessions ... Installing new version of config file /etc/cron.daily/upstart ... Setting up libdpkg-perl (1.17.10ubuntu1) ... Setting up dpkg-dev (1.17.10ubuntu1) ... Setting up plymouth (0.8.8-0ubuntu18) ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin (2.19-0ubuntu6) ... Processing triggers for ca-certificates (20140325) ... Updating certificates in /etc/ssl/certs... 7 added, 3 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for initramfs-tools (0.103ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6115399', 'amd64', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'staden-io-lib_1.13.7-1.dsc'] Initiating build PACKAGEBUILD-6115399 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-61-generic #93-Ubuntu SMP Fri May 2 21:31:50 UTC 2014 x86_64 Automatic build of staden-io-lib_1.13.7-1 on roseapple by sbuild/amd64 1.170.5 Build started at 20140620-0515 ****************************************************************************** staden-io-lib_1.13.7-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), dh-autoreconf, zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, d-shlibs Checking for already installed source dependencies... debhelper: missing dh-autoreconf: missing zlib1g-dev: missing libcurl4-gnutls-dev: missing libcurl4-nss-dev: missing d-shlibs: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dh-autoreconf zlib1g-dev libcurl4-gnutls-dev d-shlibs Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgnutls28 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 libmagic1 libpipeline1 libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff libcurl4-doc libcurl3-dbg libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev pkg-config libtool-doc automaken gfortran fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-apparmor dh-autoreconf file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libcurl4-gnutls-dev libglib2.0-0 libmagic1 libpipeline1 libsigsegv2 libtool libunistring0 libxml2 m4 man-db po-debconf zlib1g-dev 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. Need to get 8177 kB of archives. After this operation, 30.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 amd64 1:5.18-1ubuntu1 [198 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 amd64 0.18.3.2-1ubuntu1 [6392 B] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 amd64 2.41.0-2 [1068 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 amd64 1.3.0-1 [24.0 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 amd64 2.9.1+dfsg1-3ubuntu7 [573 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main groff-base amd64 1.22.2-5 [1053 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main man-db amd64 2.6.7.1-1 [858 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 amd64 0.6.8-2ubuntu1 [82.4 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libsigsegv2 amd64 2.10-4 [14.1 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 amd64 0.9.3-5ubuntu3 [271 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main file amd64 1:5.18-1ubuntu1 [20.0 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base amd64 0.18.3.2-1ubuntu1 [48.5 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main m4 amd64 1.4.17-4 [193 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main autoconf all 2.69-6 [322 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main autotools-dev all 20140510.1 [39.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main automake all 1:1.14.1-2ubuntu1 [510 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main autopoint all 0.18.3.2-1ubuntu1 [370 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main d-shlibs all 0.54ubuntu1 [10.1 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main gettext amd64 0.18.3.2-1ubuntu1 [831 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.95~2430-0ubuntu5 [11.3 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20140228ubuntu6 [606 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libtool amd64 2.4.2-1.7ubuntu1 [188 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main dh-autoreconf all 9 [15.5 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl4-gnutls-dev amd64 7.36.0-2ubuntu2 [236 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main zlib1g-dev amd64 1:1.2.8.dfsg-1ubuntu1 [183 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8177 kB in 0s (20.6 MB/s) Selecting previously unselected package libmagic1:amd64. (Reading database ... 11901 files and directories currently installed.) Preparing to unpack .../libmagic1_1%3a5.18-1ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.18-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.41.0-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.41.0-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.3.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.3.0-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu7_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-3ubuntu7) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-5_amd64.deb ... 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Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.2-1ubuntu1_amd64.deb ... Unpacking gettext-base (0.18.3.2-1ubuntu1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-4_amd64.deb ... Unpacking m4 (1.4.17-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-6_all.deb ... Unpacking autoconf (2.69-6) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20140510.1_all.deb ... Unpacking autotools-dev (20140510.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.14.1-2ubuntu1_all.deb ... Unpacking automake (1:1.14.1-2ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../autopoint_0.18.3.2-1ubuntu1_all.deb ... Unpacking autopoint (0.18.3.2-1ubuntu1) ... Selecting previously unselected package d-shlibs. 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Preparing to unpack .../libtool_2.4.2-1.7ubuntu1_amd64.deb ... Unpacking libtool (2.4.2-1.7ubuntu1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_9_all.deb ... Unpacking dh-autoreconf (9) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../libcurl4-gnutls-dev_7.36.0-2ubuntu2_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (7.36.0-2ubuntu2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up libmagic1:amd64 (1:5.18-1ubuntu1) ... Setting up libasprintf0c2:amd64 (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:amd64 (2.41.0-2) ... No schema files found: doing nothing. Setting up libpipeline1:amd64 (1.3.0-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3ubuntu7) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:amd64 (0.6.8-2ubuntu1) ... Setting up libsigsegv2:amd64 (2.10-4) ... Setting up libunistring0:amd64 (0.9.3-5ubuntu3) ... Setting up file (1:5.18-1ubuntu1) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-6) ... Setting up autotools-dev (20140510.1) ... Setting up automake (1:1.14.1-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.18.3.2-1ubuntu1) ... Setting up d-shlibs (0.54ubuntu1) ... Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.95~2430-0ubuntu5) ... Setting up debhelper (9.20140228ubuntu6) ... Setting up libtool (2.4.2-1.7ubuntu1) ... Setting up dh-autoreconf (9) ... Setting up libcurl4-gnutls-dev:amd64 (7.36.0-2ubuntu2) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-0ubuntu6 make_4.0-8 dpkg-dev_1.17.10ubuntu1 gcc-4.8_4.8.3-3ubuntu3 g++-4.8_4.8.3-3ubuntu3 binutils_2.24.51.20140617-1ubuntu1 libstdc++-4.8-dev_4.8.3-3ubuntu3 libstdc++6_4.9.0-7ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Thu Jun 19 23:13:08 2014 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./staden-io-lib_1.13.7-1.dsc dpkg-source: info: extracting staden-io-lib in staden-io-lib-1.13.7 dpkg-source: info: unpacking staden-io-lib_1.13.7.orig.tar.gz dpkg-source: info: unpacking staden-io-lib_1.13.7-1.debian.tar.xz dpkg-source: info: applying pathmax.patch dpkg-buildpackage: source package staden-io-lib dpkg-buildpackage: source version 1.13.7-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build staden-io-lib-1.13.7 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/build/buildd/staden-io-lib-1.13.7' dh_auto_clean rm -f tests/.done tests/data/ce\#sorted.sam tests/data/ce\#unsorted.sam make[1]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_autoreconf -a aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:83: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... ../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from... ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:83: the top level configure.in:83: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... ../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from... ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:83: the top level libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./ltmain.sh' libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.in and libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree. libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am. aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:83: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... ../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from... ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:83: the top level configure.in:83: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... ../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from... ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:83: the top level configure.in:83: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... ../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from... ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:83: the top level automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:83: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2661: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2678: AC_LINK_IFELSE is expanded from... ../../lib/m4sugar/m4sh.m4:639: AS_IF is expanded from... ../../lib/autoconf/general.m4:2031: AC_CACHE_VAL is expanded from... ../../lib/autoconf/general.m4:2052: AC_CACHE_CHECK is expanded from... acinclude.m4:40: LIBCURL_CHECK_CONFIG is expanded from... configure.in:83: the top level configure.in:64: installing './compile' io_lib/Makefile.am:139: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' progs/Makefile.am:144: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' dh_auto_configure -a checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.36.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking for BZ2_bzBuffToBuffCompress in -lbz2... no checking for lzma_easy_buffer_encode in -llzma... no checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for library containing pthread_join... -lpthread checking for library containing cos... -lm checking for strdup... yes checking for fsync... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make[1]: Entering directory '/build/buildd/staden-io-lib-1.13.7' make all-recursive make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7' Making all in io_lib make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7/io_lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c Read.c -o libstaden_read_la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 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--mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libstaden_read_la-sff.lo `test -f 'sff.c' || echo './'`sff.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c sff.c -o libstaden_read_la-sff.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector 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libstaden_read_la-thread_pool.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -version-info 6:1:5 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libstaden-read.la -rpath /usr/lib/x86_64-linux-gnu libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo libstaden_read_la-bam.lo libstaden_read_la-sam_header.lo libstaden_read_la-arith_static.lo libstaden_read_la-rANS_static.lo libstaden_read_la-cram_codecs.lo libstaden_read_la-cram_encode.lo libstaden_read_la-cram_decode.lo libstaden_read_la-cram_stats.lo libstaden_read_la-cram_io.lo libstaden_read_la-cram_index.lo libstaden_read_la-zfio.lo libstaden_read_la-dstring.lo libstaden_read_la-string_alloc.lo libstaden_read_la-md5.lo libstaden_read_la-scram.lo libstaden_read_la-thread_pool.lo -lz -lcurl -lm -lpthread libtool: link: gcc -shared -fPIC -DPIC .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-arith_static.o .libs/libstaden_read_la-rANS_static.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o -lz /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lm -lpthread -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -Wl,-soname -Wl,libstaden-read.so.1 -o .libs/libstaden-read.so.1.5.1 libtool: link: (cd ".libs" && rm -f "libstaden-read.so.1" && ln -s "libstaden-read.so.1.5.1" "libstaden-read.so.1") libtool: link: (cd ".libs" && rm -f "libstaden-read.so" && ln -s "libstaden-read.so.1.5.1" "libstaden-read.so") libtool: link: ar cru .libs/libstaden-read.a libstaden_read_la-Read.o libstaden_read_la-scf_extras.o libstaden_read_la-translate.o libstaden_read_la-compression.o libstaden_read_la-ztr.o libstaden_read_la-ztr_translate.o libstaden_read_la-deflate_interlaced.o libstaden_read_la-fpoint.o libstaden_read_la-seqIOABI.o libstaden_read_la-seqIOALF.o libstaden_read_la-expFileIO.o libstaden_read_la-seqIOPlain.o libstaden_read_la-misc_scf.o libstaden_read_la-read_scf.o libstaden_read_la-write_scf.o libstaden_read_la-sff.o libstaden_read_la-srf.o libstaden_read_la-array.o libstaden_read_la-compress.o libstaden_read_la-error.o libstaden_read_la-files.o libstaden_read_la-find.o libstaden_read_la-mach-io.o libstaden_read_la-open_trace_file.o libstaden_read_la-read_alloc.o libstaden_read_la-strings.o libstaden_read_la-traceType.o libstaden_read_la-xalloc.o libstaden_read_la-vlen.o libstaden_read_la-hash_table.o libstaden_read_la-jenkins_lookup3.o libstaden_read_la-mFILE.o libstaden_read_la-pooled_alloc.o libstaden_read_la-bam.o libstaden_read_la-sam_header.o libstaden_read_la-arith_static.o libstaden_read_la-rANS_static.o libstaden_read_la-cram_codecs.o libstaden_read_la-cram_encode.o libstaden_read_la-cram_decode.o libstaden_read_la-cram_stats.o libstaden_read_la-cram_io.o libstaden_read_la-cram_index.o libstaden_read_la-zfio.o libstaden_read_la-dstring.o libstaden_read_la-string_alloc.o libstaden_read_la-md5.o libstaden_read_la-scram.o libstaden_read_la-thread_pool.o libtool: link: ranlib .libs/libstaden-read.a libtool: link: ( cd ".libs" && rm -f "libstaden-read.la" && ln -s "../libstaden-read.la" "libstaden-read.la" ) make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/io_lib' Making all in progs make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7/progs' gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o convert_trace.o convert_trace.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o makeSCF.o makeSCF.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o extract_seq.o extract_seq.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o extract_qual.o extract_qual.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o extract_fastq.o extract_fastq.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o index_tar.o index_tar.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o index_tar index_tar.o -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o index_tar index_tar.o -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o scf_dump.o scf_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_dump scf_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_dump scf_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o scf_info.o scf_info.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_info scf_info.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_info scf_info.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o scf_update.o scf_update.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scf_update scf_update.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scf_update scf_update.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o get_comment.o get_comment.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o get_comment get_comment.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/get_comment get_comment.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o hash_tar.o hash_tar.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_tar hash_tar.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_tar hash_tar.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o hash_extract.o hash_extract.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_extract hash_extract.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_extract hash_extract.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o hash_list.o hash_list.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_list hash_list.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_list hash_list.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o trace_dump.o trace_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o trace_dump trace_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/trace_dump trace_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o hash_sff.o hash_sff.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_sff hash_sff.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_sff hash_sff.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o append_sff.o append_sff.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o append_sff append_sff.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/append_sff append_sff.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ztr_dump.o ztr_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o ztr_dump ztr_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ztr_dump ztr_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf_dump_all.o srf_dump_all.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_dump_all srf_dump_all.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_dump_all srf_dump_all.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf_index_hash.o srf_index_hash.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_index_hash srf_index_hash.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_index_hash srf_index_hash.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf_extract_linear.o srf_extract_linear.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf_extract_hash.o srf_extract_hash.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf2fastq.o srf2fastq.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf2fasta.o srf2fasta.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf_filter.o srf_filter.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf_info.o srf_info.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o srf_list.o srf_list.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o hash_exp.o hash_exp.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o hash_exp hash_exp.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/hash_exp hash_exp.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o cram_dump.o cram_dump.c cram_dump.c: In function 'DumpMap2': cram_dump.c:73:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] HashTableAdd(ds_h, (char *)k, 4, hd, NULL); ^ cram_dump.c: In function 'main': cram_dump.c:297:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] hi = HashTableSearch(bsize_h, (char *)k, 4); ^ cram_dump.c:303:29: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] HashTableAdd(bsize_h, (char *)k, 4, hd, NULL); ^ cram_dump.c:712:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (!(hi = HashTableSearch(bsize_h, (char *)id, 4))) ^ cram_dump.c:715:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] k = (int)hi->key; ^ cram_dump.c:732:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] c = ((int)hi->key)>>8; ^ /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o cram_dump cram_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cram_dump cram_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o cram_index.o cram_index.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o cram_index cram_index.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cram_index cram_index.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o scramble.o scramble.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scramble scramble.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scramble scramble.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o scram_merge.o scram_merge.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scram_merge scram_merge.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scram_merge scram_merge.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o scram_pileup.o scram_pileup.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scram_pileup scram_pileup.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o scram_flagstat.o scram_flagstat.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scram_flagstat scram_flagstat.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scram_flagstat scram_flagstat.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o scram_test.o scram_test.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o scram_test scram_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/scram_test scram_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/progs' Making all in tests make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/tests' make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' make[1]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' dh_auto_test -a make[1]: Entering directory '/build/buildd/staden-io-lib-1.13.7' Making check in io_lib make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7/io_lib' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/io_lib' Making check in progs make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7/progs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/progs' Making check in tests make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7/tests' make check-TESTS make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7/tests' make[4]: Entering directory '/build/buildd/staden-io-lib-1.13.7/tests' PASS: srf2fasta.test PASS: srf2fastq.test PASS: srf_info.test PASS: srf_filter.test PASS: srf_index.test PASS: scram.test PASS: scram_mt.test make[5]: Entering directory '/build/buildd/staden-io-lib-1.13.7/tests' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/tests' ============================================================================ Testsuite summary for io_lib 1.13.7 ============================================================================ # TOTAL: 7 # PASS: 7 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/tests' make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/tests' make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/tests' make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' make[1]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_auto_install -a make[1]: Entering directory '/build/buildd/staden-io-lib-1.13.7' Making install in io_lib make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7/io_lib' make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7/io_lib' /bin/mkdir -p '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libstaden-read.la '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libstaden-read.so.1.5.1 /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.1.5.1 libtool: install: (cd /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libstaden-read.so.1.5.1 libstaden-read.so.1 || { rm -f libstaden-read.so.1 && ln -s libstaden-read.so.1.5.1 libstaden-read.so.1; }; }) libtool: install: (cd /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libstaden-read.so.1.5.1 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.1.5.1 libstaden-read.so; }; }) libtool: install: /usr/bin/install -c .libs/libstaden-read.lai /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.la libtool: install: /usr/bin/install -c .libs/libstaden-read.a /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: chmod 644 /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: ranlib /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: warning: remember to run `libtool --finish /usr/lib/x86_64-linux-gnu' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/io_lib' make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/io_lib' Making install in progs make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7/progs' make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7/progs' /bin/mkdir -p '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat scram_test '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin' libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/convert_trace /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/convert_trace libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/makeSCF /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/makeSCF libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_seq /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/extract_seq libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_qual /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/extract_qual libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_fastq /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/extract_fastq libtool: install: /usr/bin/install -c index_tar /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/index_tar libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_dump /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/scf_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_info /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/scf_info libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_update /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/scf_update libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/get_comment /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/get_comment libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_tar /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/hash_tar libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_extract /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/hash_extract libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_list /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/hash_list libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/trace_dump /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/trace_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_sff /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/hash_sff libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/append_sff /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/append_sff libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/ztr_dump /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/ztr_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_dump_all /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf_dump_all libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_index_hash /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf_index_hash libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_extract_linear /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf_extract_linear libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_extract_hash /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf_extract_hash libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf2fastq /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf2fastq libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf2fasta /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf2fasta libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_filter /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf_filter libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_info /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf_info libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_list /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/srf_list libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_exp /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/hash_exp libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_dump /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/cram_dump libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_index /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/cram_index libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scramble /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/scramble libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_merge /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/scram_merge libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_pileup /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/scram_pileup libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_flagstat /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/scram_flagstat libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_test /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin/scram_test make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/progs' make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/progs' Making install in tests make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7/tests' make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/tests' make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7/tests' make[2]: Entering directory '/build/buildd/staden-io-lib-1.13.7' make[3]: Entering directory '/build/buildd/staden-io-lib-1.13.7' /bin/mkdir -p '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin' /usr/bin/install -c io_lib-config '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/bin' /bin/mkdir -p '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 man/man1/srf_index_hash.1 man/man1/srf_info.1 man/man1/srf_list.1 man/man1/srf2fasta.1 man/man1/srf2fastq.1 man/man1/scramble.1 '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/share/man/man1' /bin/mkdir -p '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 man/man3/read_scf_header.3 man/man3/read_allocate.3 man/man3/ExperimentFile.3 man/man3/write_reading.3 man/man3/write_scf.3 man/man3/read_deallocate.3 man/man3/fwrite_reading.3 man/man3/read2scf.3 man/man3/scf2read.3 man/man3/fwrite_scf.3 man/man3/write_scf_header.3 man/man3/read_reading.3 man/man3/read_scf.3 man/man3/exp2read.3 man/man3/fread_reading.3 man/man3/read2exp.3 man/man3/fread_scf.3 '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/share/man/man3' /bin/mkdir -p '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/share/man/man4' /usr/bin/install -c -m 644 man/man4/Read.4 '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/share/man/man4' /bin/mkdir -p '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/Read.h io_lib/scf_extras.h io_lib/translate.h io_lib/abi.h io_lib/fpoint.h io_lib/seqIOABI.h io_lib/alf.h io_lib/expFileIO.h io_lib/plain.h io_lib/scf.h io_lib/sff.h io_lib/array.h io_lib/compress.h io_lib/error.h io_lib/mach-io.h io_lib/misc.h io_lib/open_trace_file.h io_lib/tar_format.h io_lib/traceType.h io_lib/xalloc.h io_lib/mFILE.h io_lib/stdio_hack.h io_lib/vlen.h io_lib/hash_table.h io_lib/jenkins_lookup3.h io_lib/os.h io_lib/compression.h io_lib/ztr.h io_lib/deflate_interlaced.h io_lib/srf.h io_lib/pooled_alloc.h io_lib/cram.h io_lib/cram_structs.h io_lib/cram_io.h io_lib/cram_encode.h io_lib/cram_decode.h io_lib/cram_codecs.h io_lib/cram_index.h io_lib/cram_stats.h io_lib/zfio.h '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/scram.h io_lib/bam.h io_lib/sam_header.h io_lib/dstring.h io_lib/string_alloc.h io_lib_config.h io_lib/md5.h io_lib/thread_pool.h io_lib/binning.h '/build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/include/io_lib' make[3]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' make[2]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' make[1]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' debian/rules override_dh_install make[1]: Entering directory '/build/buildd/staden-io-lib-1.13.7' dh_install mkdir -p /build/buildd/staden-io-lib-1.13.7/debian/libstaden-read-dev/usr/bin mv /build/buildd/staden-io-lib-1.13.7/debian/staden-io-lib-utils/usr/bin/io_lib-config /build/buildd/staden-io-lib-1.13.7/debian/libstaden-read-dev/usr/bin find debian/tmp -name "*.la" -delete # Call d-shlibmove to comply with library packaging guide d-shlibmove --commit \ --multiarch \ --devunversioned \ --override s/libbz2-1.0-dev/libbz2-dev/ \ --override s/libcurl-gnutls4-dev/libcurl4-gnutls-dev/ \ --movedev "debian/tmp/usr/include" usr \ debian/tmp/usr/lib/*/libstaden-read.so Library package automatic movement utility --> libcurl4-gnutls-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libstaden-read1/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.la debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu || true mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu mv /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.1 debian/libstaden-read1/usr/lib/x86_64-linux-gnu mv /build/buildd/staden-io-lib-1.13.7/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.1.5.1 debian/libstaden-read1/usr/lib/x86_64-linux-gnu PKGDEV=libstaden-read-dev PKGSHL=libstaden-read1 install -d -m 755 debian/libstaden-read-dev/usr mv debian/tmp/usr/include debian/libstaden-read-dev/usr mv: cannot stat 'debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.la': No such file or directory # manpages need some post editing but in case it could be automated, this code would help # mkdir -p # help2man --no-discard-stderr --no-info --help-option='""' \ # --name='filter SRF files for various purposes' \ # --version-string="" \ # /build/buildd/staden-io-lib-1.13.7/debian//usr/bin/srf_filter > /srf_filter.1 mkdir -p debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test for tst in `ls tests/*.test` ; do \ sed -e 's#\.\./$top_builddir/progs/#/usr/bin/#' -e 's#$top_builddir/progs/#/usr/bin/#' ${tst} > debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/`basename ${tst}` ; \ done # remove autogenerated big data files rm -f debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/data/ce\#*sorted.sam make[1]: Leaving directory '/build/buildd/staden-io-lib-1.13.7' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: staden-io-lib-utils libstaden-read-dev libstaden-read1 dh_strip debug symbol extraction: packages to act on: staden-io-lib-utils libstaden-read-dev libstaden-read1 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `staden-io-lib-utils-dbgsym' in `../staden-io-lib-utils-dbgsym_1.13.7-1_amd64.ddeb'. Using buildid for compat level >= 9 libstaden-read-dev has no unstripped objects, ignoring find: `/build/buildd/staden-io-lib-1.13.7/debian/libstaden-read-dev-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/staden-io-lib-1.13.7/debian/libstaden-read-dev-dbgsym and no dbgdepends, ignoring Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `libstaden-read1-dbgsym' in `../libstaden-read1-dbgsym_1.13.7-1_amd64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libstaden-read-dev: unused substitution variable ${devlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libstaden-read1: unused substitution variable ${misc:Pre-Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 121 pkgstriptranslations: processing staden-io-lib-utils (in debian/staden-io-lib-utils); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/staden-io-lib-utils/DEBIAN/control, package staden-io-lib-utils, directory debian/staden-io-lib-utils .. removing usr/share/doc/staden-io-lib-utils/CHANGES.gz Searching for duplicated docs in dependency libstaden-read1... symlinking changelog.Debian.gz in staden-io-lib-utils to file in libstaden-read1 pkgstripfiles: PNG optimization for package staden-io-lib-utils took 0 s dpkg-deb: warning: 'debian/staden-io-lib-utils/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `staden-io-lib-utils' in `../staden-io-lib-utils_1.13.7-1_amd64.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libstaden-read-dev (in debian/libstaden-read-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libstaden-read-dev/DEBIAN/control, package libstaden-read-dev, directory debian/libstaden-read-dev Searching for duplicated docs in dependency libstaden-read1... symlinking changelog.Debian.gz in libstaden-read-dev to file in libstaden-read1 pkgstripfiles: PNG optimization for package libstaden-read-dev took 0 s dpkg-deb: warning: 'debian/libstaden-read-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libstaden-read-dev' in `../libstaden-read-dev_1.13.7-1_amd64.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libstaden-read1 (in debian/libstaden-read1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libstaden-read1/DEBIAN/control, package libstaden-read1, directory debian/libstaden-read1 pkgstripfiles: Truncating usr/share/doc/libstaden-read1/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package libstaden-read1 took 0 s dpkg-deb: warning: 'debian/libstaden-read1/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libstaden-read1' in `../libstaden-read1_1.13.7-1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../staden-io-lib_1.13.7-1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build staden-io-lib-1.13.7 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140620-0519 Publishing debug debs. chroot-autobuild/build/buildd/staden-io-lib-utils_1.13.7-1_amd64.deb: new debian package, version 2.0. size 120610 bytes: control archive= 2238 bytes. 1019 bytes, 22 lines control 2850 bytes, 48 lines md5sums Package: staden-io-lib-utils Source: staden-io-lib Version: 1.13.7-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 542 Depends: libc6 (>= 2.14), libstaden-read1 (>= 1.13.7) Suggests: staden-io-lib-examples Section: science Priority: optional Homepage: http://staden.sourceforge.net/ Description: programs for maniuplating DNA sequencing files The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. chroot-autobuild/build/buildd/libstaden-read-dev_1.13.7-1_amd64.deb: new debian package, version 2.0. size 250698 bytes: control archive= 2446 bytes. 815 bytes, 19 lines control 3819 bytes, 59 lines md5sums Package: libstaden-read-dev Source: staden-io-lib Version: 1.13.7-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1113 Depends: libstaden-read1 (= 1.13.7-1) Section: libdevel Priority: optional Homepage: http://staden.sourceforge.net/ Description: development files for libstaden-read This package contains the header and development files needed to build programs and packages using the Staden io_lib. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. chroot-autobuild/build/buildd/libstaden-read1_1.13.7-1_amd64.deb: new debian package, version 2.0. size 186274 bytes: control archive= 5298 bytes. 982 bytes, 20 lines control 241 bytes, 3 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 33 bytes, 1 lines shlibs 18604 bytes, 649 lines symbols Package: libstaden-read1 Source: staden-io-lib Version: 1.13.7-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 496 Depends: libc6 (>= 2.15), libcurl3-gnutls (>= 7.16.2), zlib1g (>= 1:1.2.0.2) Section: libs Priority: optional Homepage: http://staden.sourceforge.net/ Description: Staden library for reading and writing DNA sequencing results This package contains the Staden io_lib, that is renamed in Debian and Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. chroot-autobuild/build/buildd/staden-io-lib-utils_1.13.7-1_amd64.deb: drwxr-xr-x root/root 0 2014-06-20 05:19 ./ drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/ drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/bin/ -rwxr-xr-x root/root 14696 2014-06-20 05:19 ./usr/bin/scramble -rwxr-xr-x root/root 10464 2014-06-20 05:19 ./usr/bin/index_tar -rwxr-xr-x root/root 10440 2014-06-20 05:19 ./usr/bin/hash_extract -rwxr-xr-x root/root 14664 2014-06-20 05:19 ./usr/bin/extract_qual -rwxr-xr-x root/root 18824 2014-06-20 05:19 ./usr/bin/srf2fastq -rwxr-xr-x root/root 10512 2014-06-20 05:19 ./usr/bin/srf_extract_linear -rwxr-xr-x root/root 6312 2014-06-20 05:19 ./usr/bin/scf_update -rwxr-xr-x root/root 6296 2014-06-20 05:19 ./usr/bin/hash_list -rwxr-xr-x root/root 10400 2014-06-20 05:19 ./usr/bin/trace_dump -rwxr-xr-x root/root 10424 2014-06-20 05:19 ./usr/bin/get_comment -rwxr-xr-x root/root 22936 2014-06-20 05:19 ./usr/bin/cram_dump -rwxr-xr-x root/root 6304 2014-06-20 05:19 ./usr/bin/cram_index -rwxr-xr-x root/root 19000 2014-06-20 05:19 ./usr/bin/convert_trace -rwxr-xr-x root/root 10504 2014-06-20 05:19 ./usr/bin/srf_extract_hash -rwxr-xr-x root/root 10552 2014-06-20 05:19 ./usr/bin/extract_seq -rwxr-xr-x root/root 10472 2014-06-20 05:19 ./usr/bin/append_sff -rwxr-xr-x root/root 27056 2014-06-20 05:19 ./usr/bin/srf_dump_all -rwxr-xr-x root/root 10464 2014-06-20 05:19 ./usr/bin/hash_exp -rwxr-xr-x root/root 27256 2014-06-20 05:19 ./usr/bin/srf_filter -rwxr-xr-x root/root 10568 2014-06-20 05:19 ./usr/bin/hash_sff -rwxr-xr-x root/root 10528 2014-06-20 05:19 ./usr/bin/srf_index_hash -rwxr-xr-x root/root 6288 2014-06-20 05:19 ./usr/bin/scf_info -rwxr-xr-x root/root 14584 2014-06-20 05:19 ./usr/bin/scram_pileup -rwxr-xr-x root/root 14624 2014-06-20 05:19 ./usr/bin/scram_test -rwxr-xr-x root/root 10392 2014-06-20 05:19 ./usr/bin/scf_dump -rwxr-xr-x root/root 10520 2014-06-20 05:19 ./usr/bin/extract_fastq -rwxr-xr-x root/root 14616 2014-06-20 05:19 ./usr/bin/scram_flagstat -rwxr-xr-x root/root 14648 2014-06-20 05:19 ./usr/bin/scram_merge -rwxr-xr-x root/root 14704 2014-06-20 05:19 ./usr/bin/hash_tar -rwxr-xr-x root/root 10440 2014-06-20 05:19 ./usr/bin/srf_list -rwxr-xr-x root/root 14640 2014-06-20 05:19 ./usr/bin/makeSCF -rwxr-xr-x root/root 14664 2014-06-20 05:19 ./usr/bin/ztr_dump -rwxr-xr-x root/root 19000 2014-06-20 05:19 ./usr/bin/srf_info -rwxr-xr-x root/root 10448 2014-06-20 05:19 ./usr/bin/srf2fasta drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/share/ drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/share/doc-base/ -rw-r--r-- root/root 349 2009-05-29 05:26 ./usr/share/doc-base/staden-io-lib-ztr-format -rw-r--r-- root/root 304 2009-05-29 05:26 ./usr/share/doc-base/staden-io-lib-hash-file-format drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/share/doc/staden-io-lib-utils/ -rw-r--r-- root/root 20980 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root/root 0 2014-06-20 05:19 ./usr/ drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/share/ drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/share/doc/libstaden-read1/ -rw-r--r-- root/root 7435 2014-06-18 22:24 ./usr/share/doc/libstaden-read1/copyright -rw-r--r-- root/root 1468 2014-06-20 05:19 ./usr/share/doc/libstaden-read1/changelog.Debian.gz drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/lib/ drwxr-xr-x root/root 0 2014-06-20 05:19 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 446104 2014-06-20 05:19 ./usr/lib/x86_64-linux-gnu/libstaden-read.so.1.5.1 lrwxrwxrwx root/root 0 2014-06-20 05:19 ./usr/lib/x86_64-linux-gnu/libstaden-read.so.1 -> libstaden-read.so.1.5.1 staden-io-lib_1.13.7-1_amd64.changes: Format: 1.8 Date: Fri, 20 Jun 2014 08:04:00 +0900 Source: staden-io-lib Binary: staden-io-lib-utils libstaden-read-dev libstaden-read1 staden-io-lib-examples Architecture: amd64 Version: 1.13.7-1 Distribution: utopic-proposed Urgency: medium Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Charles Plessy Description: libstaden-read-dev - development files for libstaden-read libstaden-read1 - Staden library for reading and writing DNA sequencing results staden-io-lib-examples - programs for maniuplating DNA sequencing files staden-io-lib-utils - programs for maniuplating DNA sequencing files Changes: staden-io-lib (1.13.7-1) unstable; urgency=medium . * New upstream release. * Removed debian/patches/fix-bam-read.patch, applied upstream. * debian/libstaden-read1.symbols: updated. Some symbols are missing but it is in area of code that are considered beta (in my understanding). Checksums-Sha1: c2221712a275eadd2242a767a216694840417b71 120610 staden-io-lib-utils_1.13.7-1_amd64.deb 8cdf135a2e58eb1aad63df03e32ec793649f1caf 250698 libstaden-read-dev_1.13.7-1_amd64.deb fd07a2b4dae96c3b1cc9f2244906533ce7d3b95e 186274 libstaden-read1_1.13.7-1_amd64.deb Checksums-Sha256: 4b4ce8c0fee8a2845fb7e286c5207a0b99526d32718a6eb40876a5fd8b6bd86c 120610 staden-io-lib-utils_1.13.7-1_amd64.deb 8924aa5ed2fcb306a8fed7fcd6f6b308847a6a9384e40c8394f6a15b74548b20 250698 libstaden-read-dev_1.13.7-1_amd64.deb d68149298f375cf970f3aff52ac3073d7a8dfcf09e2db047d07e969442e5ac30 186274 libstaden-read1_1.13.7-1_amd64.deb Files: fe47d14f22f6f402fc82726bfbabbe74 120610 science optional staden-io-lib-utils_1.13.7-1_amd64.deb dc0f85130d2fada97db9be0f4368c338 250698 libdevel optional libstaden-read-dev_1.13.7-1_amd64.deb 61d75cd9b4a18514775ead2f1ffae98d 186274 libs optional libstaden-read1_1.13.7-1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140620-0519 Build needed 00:04:12, 547368k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6115399'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6115399/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6115399'] Unmounting chroot for build PACKAGEBUILD-6115399... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6115399'] Removing build PACKAGEBUILD-6115399