https://launchpad.net/ubuntu/+source/staden-io-lib/1.14.11-2/+build/15731059 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-042 4.4.0-139-generic #165-Ubuntu SMP Wed Oct 24 10:58:50 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 2 Dec 17:12:32 ntpdate[1817]: adjust time server 10.211.37.1 offset 0.013835 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15731059 /home/buildd/filecache-default/b71572c9405b6ce6ff1d1ad001cf764bb07f52ae Creating target for build PACKAGEBUILD-15731059 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15731059 Starting target for build PACKAGEBUILD-15731059 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15731059 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15731059 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15731059 Updating target for build PACKAGEBUILD-15731059 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1005 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [8929 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5131 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [88.1 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [44.3 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [338 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [178 kB] Fetched 16.7 MB in 4s (3755 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: apt base-files binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 dash dmsetup dpkg dpkg-dev fakeroot findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libdpkg-perl libfakeroot libffi6 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgmp10 libgnutls30 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 libmpx2 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 linux-libc-dev lockfile-progs openssl perl perl-base sed systemd systemd-sysv tar tzdata 70 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 54.3 MB of archives. After this operation, 48.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main amd64 base-files amd64 10.1ubuntu8 [60.1 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 tar amd64 1.30+dfsg-3 [242 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg amd64 1.19.2ubuntu1 [1101 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 dash amd64 0.5.10.2-1 [89.3 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 findutils amd64 4.6.0+git+20181018-1 [295 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 hostname amd64 3.21 [11.2 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 perl-modules-5.28 all 5.28.1-1 [2812 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm6 amd64 1.18.1-2 [27.6 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm-compat4 amd64 1.18.1-2 [6152 B] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libperl5.28 amd64 5.28.1-1 [3823 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 perl amd64 5.28.1-1 [204 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 perl-base amd64 5.28.1-1 [1511 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.2 [672 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.5-2 [186 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 init-system-helpers all 1.56 [38.8 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libquadmath0 amd64 8.2.0-10ubuntu1 [134 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libubsan1 amd64 8.2.0-10ubuntu1 [121 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8-base amd64 8.2.0-10ubuntu1 [18.7 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc1 amd64 1:8.2.0-10ubuntu1 [40.8 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libitm1 amd64 8.2.0-10ubuntu1 [28.2 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libasan5 amd64 8.2.0-10ubuntu1 [364 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgomp1 amd64 8.2.0-10ubuntu1 [76.4 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libatomic1 amd64 8.2.0-10ubuntu1 [9060 B] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblsan0 amd64 8.2.0-10ubuntu1 [132 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libtsan0 amd64 8.2.0-10ubuntu1 [288 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libmpx2 amd64 8.2.0-10ubuntu1 [11.7 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 cpp-8 amd64 8.2.0-10ubuntu1 [7222 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcc1-0 amd64 8.2.0-10ubuntu1 [39.5 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8 amd64 8.2.0-10ubuntu1 [8000 kB] Get:30 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 g++-8 amd64 8.2.0-10ubuntu1 [8116 kB] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++-8-dev amd64 8.2.0-10ubuntu1 [1539 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc-8-dev amd64 8.2.0-10ubuntu1 [2305 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++6 amd64 8.2.0-10ubuntu1 [400 kB] Get:34 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4 [236 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 libbinutils amd64 2.31.1-10ubuntu1 [482 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-common amd64 2.31.1-10ubuntu1 [194 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 binutils amd64 2.31.1-10ubuntu1 [3396 B] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-10ubuntu1 [1830 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 libudev1 amd64 239-7ubuntu14 [54.3 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 libapt-pkg5.0 amd64 1.8.0~alpha2ubuntu1 [814 kB] Get:41 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgnutls30 amd64 3.6.4-2ubuntu2 [747 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 libseccomp2 amd64 2.3.3-3ubuntu2 [38.9 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 apt amd64 1.8.0~alpha2ubuntu1 [1182 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 systemd-sysv amd64 239-7ubuntu14 [9392 B] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libapparmor1 amd64 2.12-4ubuntu10 [29.9 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 libcap-ng0 amd64 0.7.9-1build1 [10.9 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu3 [38.8 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 libgpg-error0 amd64 1.32-3 [56.0 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libkmod2 amd64 25-1ubuntu2 [41.7 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 systemd amd64 239-7ubuntu14 [2972 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 libsystemd0 amd64 239-7ubuntu14 [211 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 init amd64 1.56 [6652 B] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 libgcrypt20 amd64 1.8.4-3ubuntu1 [420 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 libselinux1 amd64 2.8-1build2 [68.6 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage-common all 2.8-1build2 [6892 B] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage1 amd64 2.8-1build2 [85.1 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 libffi6 amd64 3.2.1-9 [18.1 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 libdevmapper1.02.1 amd64 2:1.02.145-4.1ubuntu4 [127 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 dmsetup amd64 2:1.02.145-4.1ubuntu4 [74.6 kB] Get:61 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsqlite3-0 amd64 3.26.0-1 [530 kB] Get:62 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libssl1.1 amd64 1.1.1a-1ubuntu2 [1297 kB] Get:63 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 openssl amd64 1.1.1a-1ubuntu2 [618 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018g-1 [188 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 g++ amd64 4:8.2.0-2ubuntu2 [1608 B] Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 gcc amd64 4:8.2.0-2ubuntu2 [5224 B] Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 cpp amd64 4:8.2.0-2ubuntu2 [27.6 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg-dev all 1.19.2ubuntu1 [549 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 libdpkg-perl all 1.19.2ubuntu1 [227 kB] Get:70 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libfakeroot amd64 1.23-1 [25.3 kB] Get:71 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 fakeroot amd64 1.23-1 [62.4 kB] Get:72 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-7.8 [1043 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 lockfile-progs amd64 0.1.18 [9872 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.3 MB in 4s (15.3 MB/s) (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_amd64.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-3_amd64.deb ... Unpacking tar (1.30+dfsg-3) over (1.30+dfsg-2) ... Setting up tar (1.30+dfsg-3) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu1_amd64.deb ... Unpacking dpkg (1.19.2ubuntu1) over (1.19.0.5ubuntu5) ... Setting up dpkg (1.19.2ubuntu1) ... (Reading database ... 12635 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_amd64.deb ... dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... 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Setting up libbinutils:amd64 (2.31.1-10ubuntu1) ... Setting up libperl5.28:amd64 (5.28.1-1) ... Setting up fakeroot (1.23-1) ... Setting up perl (5.28.1-1) ... Setting up libgcc-8-dev:amd64 (8.2.0-10ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.31.1-10ubuntu1) ... Setting up libstdc++-8-dev:amd64 (8.2.0-10ubuntu1) ... Setting up libdpkg-perl (1.19.2ubuntu1) ... Setting up binutils (2.31.1-10ubuntu1) ... Setting up gcc-8 (8.2.0-10ubuntu1) ... Setting up g++-8 (8.2.0-10ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15731059 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-15731059 --arch=amd64 --dist=disco-proposed --nolog -A staden-io-lib_1.14.11-2.dsc Initiating build PACKAGEBUILD-15731059 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-139-generic #165-Ubuntu SMP Wed Oct 24 10:58:50 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-042.buildd +==============================================================================+ | staden-io-lib 1.14.11-2 (amd64) 02 Dec 2018 17:13 | +==============================================================================+ Package: staden-io-lib Version: 1.14.11-2 Source Version: 1.14.11-2 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/staden-io-lib-7_uc84/staden-io-lib-1.14.11' with '<>' I: NOTICE: Log filtering will replace 'build/staden-io-lib-7_uc84' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15731059/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- staden-io-lib_1.14.11-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-FvNrL6/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-FvNrL6/apt_archive ./ InRelease Get:2 copy:/<>/resolver-FvNrL6/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-FvNrL6/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-FvNrL6/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-FvNrL6/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (51.0 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-FvNrL6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, d-shlibs Filtered Build-Depends: debhelper (>= 11~), zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, d-shlibs dpkg-deb: building package 'sbuild-build-depends-staden-io-lib-dummy' in '/<>/resolver-pr09l_/apt_archive/sbuild-build-depends-staden-io-lib-dummy.deb'. Ign:1 copy:/<>/resolver-pr09l_/apt_archive ./ InRelease Get:2 copy:/<>/resolver-pr09l_/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-pr09l_/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-pr09l_/apt_archive ./ Sources [249 B] Get:5 copy:/<>/resolver-pr09l_/apt_archive ./ Packages [567 B] Fetched 2935 B in 0s (227 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install staden-io-lib build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbsd0 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu63 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtool libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbsd0 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu63 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtool libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-staden-io-lib-dummy zlib1g-dev 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 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disco/main amd64 dh-strip-nondeterminism all 0.45.0-1 [5128 B] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 dwz amd64 0.12-2 [77.7 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 gettext amd64 0.19.8.1-9 [896 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 po-debconf all 1.0.21 [233 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 debhelper all 11.3.2ubuntu1 [883 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-2.1 [41.4 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-2.1 [182 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-2.1 [29.4 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-2.1 [86.7 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-2.1 [47.8 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-2.1 [107 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-2.1 [206 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-2.1 [14.8 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-2.1 [96.4 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-common all 2.4.46+dfsg-5ubuntu3 [16.0 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-5ubuntu3 [154 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 libnghttp2-14 amd64 1.35.0-1 [78.9 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [54.5 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl3-gnutls amd64 7.61.0-1ubuntu2.2 [215 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl4-gnutls-dev amd64 7.61.0-1ubuntu2.2 [297 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.4 MB in 1s (18.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.0-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.4-3_amd64.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_amd64.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:amd64. 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Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu3) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libelf1:amd64 (0.175-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.58.1-2) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up d-shlibs (0.82+nmu1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libkrb5support0:amd64 (1.16.1-1ubuntu1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:amd64 (1:5.34-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libkeyutils1:amd64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.45.0-1) ... Setting up libk5crypto3:amd64 (1.16.1-1ubuntu1) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up gettext (0.19.8.1-9) ... Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:amd64 (1.16.1-1ubuntu1) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.21) ... Setting up libgssapi-krb5-2:amd64 (1.16.1-1ubuntu1) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libldap-2.4-2:amd64 (2.4.46+dfsg-5ubuntu3) ... Setting up libcurl3-gnutls:amd64 (7.61.0-1ubuntu2.2) ... Setting up libcurl4-gnutls-dev:amd64 (7.61.0-1ubuntu2.2) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-staden-io-lib-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.45.0-1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-139-generic amd64 (x86_64) Toolchain package versions: binutils_2.31.1-10ubuntu1 dpkg-dev_1.19.2ubuntu1 g++-8_8.2.0-10ubuntu1 gcc-8_8.2.0-10ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-10ubuntu1 libstdc++6_8.2.0-10ubuntu1 linux-libc-dev_4.19.0-7.8 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha2ubuntu1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-10ubuntu1 binutils-common_2.31.1-10ubuntu1 binutils-x86-64-linux-gnu_2.31.1-10ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-10ubuntu1 d-shlibs_0.82+nmu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu1 dpkg-dev_1.19.2ubuntu1 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-10ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-10ubuntu1 gcc-8-base_8.2.0-10ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hostname_3.21 init_1.56 init-system-helpers_1.56 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha2ubuntu1 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-10ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2.1 libassuan0_2.5.1-2 libatomic1_8.2.0-10ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-10ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-10ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl3-gnutls_7.61.0-1ubuntu2.2 libcurl4-gnutls-dev_7.61.0-1ubuntu2.2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu1 libelf1_0.175-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_0.45.0-1 libgcc-8-dev_8.2.0-10ubuntu1 libgcc1_1:8.2.0-10ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm5_1.14.1-6 libgdbm6_1.18.1-2 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.4-2ubuntu2 libgomp1_8.2.0-10ubuntu1 libgpg-error0_1.32-3 libgssapi-krb5-2_1.16.1-1ubuntu1 libgssapi3-heimdal_7.5.0+dfsg-2.1 libhcrypto4-heimdal_7.5.0+dfsg-2.1 libheimbase1-heimdal_7.5.0+dfsg-2.1 libheimntlm0-heimdal_7.5.0+dfsg-2.1 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-2.1 libicu63_63.1-4 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-10ubuntu1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1ubuntu1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.16.1-1ubuntu1 libkrb5support0_1.16.1-1ubuntu1 libldap-2.4-2_2.4.46+dfsg-5ubuntu3 libldap-common_2.4.46+dfsg-5ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-10ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.2.0-10ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.35.0-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.1-1 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libquadmath0_8.2.0-10ubuntu1 libreadline7_7.0-5 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0-1 libss2_1.44.4-2 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-10ubuntu1 libstdc++6_8.2.0-10ubuntu1 libsystemd0_239-7ubuntu14 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtsan0_8.2.0-10ubuntu1 libubsan1_8.2.0-10ubuntu1 libudev1_239-7ubuntu14 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libwind0-heimdal_7.5.0+dfsg-2.1 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.19.0-7.8 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-1 perl-base_5.28.1-1 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.1-1 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-staden-io-lib-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu14 systemd-sysv_239-7ubuntu14 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-3 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Dec 2 09:32:46 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./staden-io-lib_1.14.11-2.dsc dpkg-source: info: extracting staden-io-lib in staden-io-lib-1.14.11 dpkg-source: info: unpacking staden-io-lib_1.14.11.orig.tar.gz dpkg-source: info: unpacking staden-io-lib_1.14.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pathmax.patch dpkg-source: info: applying fix_fseeko.patch dpkg-source: info: applying fix_non_x86.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15731059 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15731059 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15731059 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package staden-io-lib dpkg-buildpackage: info: source version 1.14.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f tests/.done tests/data/ce\#sorted.sam tests/data/ce\#unsorted.sam ## ## Try to verify correct ABI version right in the beginning ## Strangely enough d-shlibmove fails in detecting it in this package ## Since upstream build system creates libstaden-read.so.11.1.0 this code is not ## activated but it should be considered in case of future problems with ABI version ## #UPSTREAMABI=`grep ^VERS_CURRENT configure.in | sed 's/^VERS_CURRENT[[:space:]]*=\([0-9]\+\)[[:space:]]*/\1/'` ; \ #DEBABI=`grep '^Package: libstaden-read[0-9]\+' debian/control | sed 's/Package: libstaden-read\([0-9]\+\)/\1/'` ; \ #if [ ${UPSTREAMABI} -ne ${DEBABI} ] ; then \ # echo "Upstream has bumped ABI to ${UPSTREAMABI} but Debian is using libstaden-read${DEBABI} (see bug #710225)" ; \ # exit 1 ; \ #fi make[1]: Leaving directory '/<>' dh_clean -O--no-parallel debian/rules build dh build --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:65: installing './compile' configure.in:67: installing './config.guess' configure.in:67: installing './config.sub' configure.in:5: installing './install-sh' configure.in:5: installing './missing' io_lib/Makefile.am:152: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' io_lib/Makefile.am: installing './depcomp' progs/Makefile.am:150: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tests/Makefile.am:59: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' dh_auto_configure -O--no-parallel ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for C compiler warning flags... -Wall checking for gawk... (cached) mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.61.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking for BZ2_bzBuffToBuffCompress in -lbz2... no checking for lzma_easy_buffer_encode in -llzma... no checking for bsc_compress in -lbsc... no checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for zlib.h... (cached) yes checking stdio_ext.h usability... yes checking stdio_ext.h presence... yes checking for stdio_ext.h... yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for fileno... yes checking for fstat... yes checking for mallopt... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for library containing pthread_join... -lpthread checking for library containing cos... -lm checking for strdup... yes checking for fsync... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -O--no-parallel make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in io_lib make[3]: Entering directory '/<>/io_lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -o libstaden_read_la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -o libstaden_read_la-scf_extras.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -o libstaden_read_la-translate.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c compression.c -o libstaden_read_la-compression.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ztr.c -o libstaden_read_la-ztr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ztr_translate.c -o libstaden_read_la-ztr_translate.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 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-DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cram_bambam.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_bambam.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cram_bambam.c -o libstaden_read_la-cram_bambam.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-bgzip.lo `test -f 'bgzip.c' || echo './'`bgzip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bgzip.c -fPIC -DPIC -o .libs/libstaden_read_la-bgzip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c bgzip.c -o libstaden_read_la-bgzip.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-tokenise_name3.lo `test -f 'tokenise_name3.c' || echo './'`tokenise_name3.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tokenise_name3.c -fPIC -DPIC -o .libs/libstaden_read_la-tokenise_name3.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tokenise_name3.c -o libstaden_read_la-tokenise_name3.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-fqzcomp_qual.lo `test -f 'fqzcomp_qual.c' || echo './'`fqzcomp_qual.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fqzcomp_qual.c -fPIC -DPIC -o .libs/libstaden_read_la-fqzcomp_qual.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c fqzcomp_qual.c -o libstaden_read_la-fqzcomp_qual.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 13:1:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libstaden-read.la -rpath /usr/lib/x86_64-linux-gnu libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo 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libstaden_read_la-cram_bambam.lo libstaden_read_la-bgzip.lo libstaden_read_la-tokenise_name3.lo libstaden_read_la-fqzcomp_qual.lo -lz -lcurl -lm -lpthread libtool: link: gcc -shared -fPIC -DPIC .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-rANS_static.o .libs/libstaden_read_la-rANS_static4x16pr.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-crc32.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o .libs/libstaden_read_la-binning.o .libs/libstaden_read_la-cram_bambam.o .libs/libstaden_read_la-bgzip.o .libs/libstaden_read_la-tokenise_name3.o .libs/libstaden_read_la-fqzcomp_qual.o -lz /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lm -lpthread -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libstaden-read.so.13 -o .libs/libstaden-read.so.13.0.1 libtool: link: (cd ".libs" && rm -f "libstaden-read.so.13" && ln -s "libstaden-read.so.13.0.1" "libstaden-read.so.13") libtool: link: (cd ".libs" && rm -f "libstaden-read.so" && ln -s "libstaden-read.so.13.0.1" "libstaden-read.so") libtool: link: ar cru .libs/libstaden-read.a libstaden_read_la-Read.o libstaden_read_la-scf_extras.o libstaden_read_la-translate.o libstaden_read_la-compression.o libstaden_read_la-ztr.o libstaden_read_la-ztr_translate.o libstaden_read_la-deflate_interlaced.o libstaden_read_la-fpoint.o libstaden_read_la-seqIOABI.o libstaden_read_la-seqIOALF.o libstaden_read_la-expFileIO.o libstaden_read_la-seqIOPlain.o libstaden_read_la-misc_scf.o libstaden_read_la-read_scf.o libstaden_read_la-write_scf.o libstaden_read_la-sff.o libstaden_read_la-srf.o libstaden_read_la-array.o libstaden_read_la-compress.o libstaden_read_la-error.o libstaden_read_la-files.o libstaden_read_la-find.o libstaden_read_la-mach-io.o libstaden_read_la-open_trace_file.o libstaden_read_la-read_alloc.o libstaden_read_la-strings.o libstaden_read_la-traceType.o libstaden_read_la-xalloc.o libstaden_read_la-vlen.o libstaden_read_la-hash_table.o libstaden_read_la-jenkins_lookup3.o libstaden_read_la-mFILE.o libstaden_read_la-pooled_alloc.o libstaden_read_la-bam.o libstaden_read_la-sam_header.o libstaden_read_la-rANS_static.o libstaden_read_la-rANS_static4x16pr.o libstaden_read_la-cram_codecs.o libstaden_read_la-cram_encode.o libstaden_read_la-cram_decode.o libstaden_read_la-cram_stats.o libstaden_read_la-cram_io.o libstaden_read_la-cram_index.o libstaden_read_la-zfio.o libstaden_read_la-dstring.o libstaden_read_la-string_alloc.o libstaden_read_la-md5.o libstaden_read_la-crc32.o libstaden_read_la-scram.o libstaden_read_la-thread_pool.o libstaden_read_la-binning.o libstaden_read_la-cram_bambam.o libstaden_read_la-bgzip.o libstaden_read_la-tokenise_name3.o libstaden_read_la-fqzcomp_qual.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libstaden-read.a libtool: link: ( cd ".libs" && rm -f "libstaden-read.la" && ln -s "../libstaden-read.la" "libstaden-read.la" ) make[3]: Leaving directory '/<>/io_lib' Making all in progs make[3]: Entering directory '/<>/progs' gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o convert_trace.o convert_trace.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o convert_trace convert_trace.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/convert_trace convert_trace.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o makeSCF.o makeSCF.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o makeSCF makeSCF.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/makeSCF makeSCF.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_seq.o extract_seq.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o extract_seq extract_seq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/extract_seq extract_seq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_qual.o extract_qual.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o extract_qual extract_qual.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/extract_qual extract_qual.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o extract_fastq.o extract_fastq.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o extract_fastq extract_fastq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/extract_fastq extract_fastq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index_tar.o index_tar.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o index_tar index_tar.o -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o index_tar index_tar.o -lm -lpthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 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-Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scramble scramble.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_merge.o scram_merge.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o scram_merge scram_merge.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_merge scram_merge.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_pileup.o scram_pileup.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_pileup scram_pileup.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_flagstat.o scram_flagstat.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o scram_flagstat scram_flagstat.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_flagstat scram_flagstat.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_test.o scram_test.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o scram_test scram_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_test scram_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_size.o cram_size.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cram_size cram_size.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_size cram_size.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_filter.o cram_filter.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cram_filter cram_filter.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_filter cram_filter.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/<>/progs' Making all in tests make[3]: Entering directory '/<>/tests' gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_io_test.o cram_io_test.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cram_io_test cram_io_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_io_test cram_io_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -O--no-parallel make -j1 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in io_lib make[2]: Entering directory '/<>/io_lib' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/io_lib' Making check in progs make[2]: Entering directory '/<>/progs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/progs' Making check in tests make[2]: Entering directory '/<>/tests' make check-TESTS make[3]: Entering directory '/<>/tests' make[4]: Entering directory '/<>/tests' PASS: srf2fasta.test PASS: srf2fastq.test PASS: srf_info.test PASS: srf_filter.test PASS: srf_index.test PASS: scram.test PASS: scram_mt.test PASS: cram_io.test PASS: java.test ============================================================================ Testsuite summary for io_lib 1.14.11 ============================================================================ # TOTAL: 9 # PASS: 9 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/tests' make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --no-parallel dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in io_lib make[2]: Entering directory '/<>/io_lib' make[3]: Entering directory '/<>/io_lib' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libstaden-read.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libstaden-read.so.13.0.1 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.13.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libstaden-read.so.13.0.1 libstaden-read.so.13 || { rm -f libstaden-read.so.13 && ln -s libstaden-read.so.13.0.1 libstaden-read.so.13; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libstaden-read.so.13.0.1 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.13.0.1 libstaden-read.so; }; }) libtool: install: /usr/bin/install -c .libs/libstaden-read.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.la libtool: install: /usr/bin/install -c .libs/libstaden-read.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/io_lib' make[2]: Leaving directory '/<>/io_lib' Making install in progs make[2]: Entering directory '/<>/progs' make[3]: Entering directory '/<>/progs' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat scram_test cram_size cram_filter '/<>/debian/tmp/usr/bin' libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/convert_trace /<>/debian/tmp/usr/bin/convert_trace libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/makeSCF /<>/debian/tmp/usr/bin/makeSCF libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_seq /<>/debian/tmp/usr/bin/extract_seq libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_qual /<>/debian/tmp/usr/bin/extract_qual libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_fastq /<>/debian/tmp/usr/bin/extract_fastq libtool: install: /usr/bin/install -c index_tar /<>/debian/tmp/usr/bin/index_tar libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_dump /<>/debian/tmp/usr/bin/scf_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_info /<>/debian/tmp/usr/bin/scf_info libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_update /<>/debian/tmp/usr/bin/scf_update libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/get_comment /<>/debian/tmp/usr/bin/get_comment libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_tar /<>/debian/tmp/usr/bin/hash_tar libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_extract /<>/debian/tmp/usr/bin/hash_extract libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_list /<>/debian/tmp/usr/bin/hash_list libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/trace_dump /<>/debian/tmp/usr/bin/trace_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_sff /<>/debian/tmp/usr/bin/hash_sff libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/append_sff /<>/debian/tmp/usr/bin/append_sff libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/ztr_dump /<>/debian/tmp/usr/bin/ztr_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_dump_all /<>/debian/tmp/usr/bin/srf_dump_all libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_index_hash /<>/debian/tmp/usr/bin/srf_index_hash libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_extract_linear /<>/debian/tmp/usr/bin/srf_extract_linear libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_extract_hash /<>/debian/tmp/usr/bin/srf_extract_hash libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf2fastq /<>/debian/tmp/usr/bin/srf2fastq libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf2fasta /<>/debian/tmp/usr/bin/srf2fasta libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_filter /<>/debian/tmp/usr/bin/srf_filter libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_info /<>/debian/tmp/usr/bin/srf_info libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_list /<>/debian/tmp/usr/bin/srf_list libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_exp /<>/debian/tmp/usr/bin/hash_exp libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_dump /<>/debian/tmp/usr/bin/cram_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_index /<>/debian/tmp/usr/bin/cram_index libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scramble /<>/debian/tmp/usr/bin/scramble libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_merge /<>/debian/tmp/usr/bin/scram_merge libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_pileup /<>/debian/tmp/usr/bin/scram_pileup libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_flagstat /<>/debian/tmp/usr/bin/scram_flagstat libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_test /<>/debian/tmp/usr/bin/scram_test libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_size /<>/debian/tmp/usr/bin/cram_size libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_filter /<>/debian/tmp/usr/bin/cram_filter make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/progs' make[2]: Leaving directory '/<>/progs' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c io_lib-config '/<>/debian/tmp/usr/bin' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 man/man1/srf_index_hash.1 man/man1/srf_info.1 man/man1/srf_list.1 man/man1/srf2fasta.1 man/man1/srf2fastq.1 man/man1/scramble.1 '/<>/debian/tmp/usr/share/man/man1' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 man/man3/read_scf_header.3 man/man3/read_allocate.3 man/man3/ExperimentFile.3 man/man3/write_reading.3 man/man3/write_scf.3 man/man3/read_deallocate.3 man/man3/fwrite_reading.3 man/man3/read2scf.3 man/man3/scf2read.3 man/man3/fwrite_scf.3 man/man3/write_scf_header.3 man/man3/read_reading.3 man/man3/read_scf.3 man/man3/exp2read.3 man/man3/fread_reading.3 man/man3/read2exp.3 man/man3/fread_scf.3 '/<>/debian/tmp/usr/share/man/man3' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man4' /usr/bin/install -c -m 644 man/man4/Read.4 '/<>/debian/tmp/usr/share/man/man4' /bin/mkdir -p '/<>/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/Read.h io_lib/scf_extras.h io_lib/translate.h io_lib/abi.h io_lib/fpoint.h io_lib/seqIOABI.h io_lib/alf.h io_lib/expFileIO.h io_lib/plain.h io_lib/scf.h io_lib/sff.h io_lib/array.h io_lib/compress.h io_lib/error.h io_lib/mach-io.h io_lib/misc.h io_lib/open_trace_file.h io_lib/tar_format.h io_lib/traceType.h io_lib/xalloc.h io_lib/mFILE.h io_lib/stdio_hack.h io_lib/vlen.h io_lib/hash_table.h io_lib/jenkins_lookup3.h io_lib/os.h io_lib/compression.h io_lib/ztr.h io_lib/deflate_interlaced.h io_lib/srf.h io_lib/pooled_alloc.h io_lib/cram.h io_lib/cram_structs.h io_lib/cram_io.h io_lib/cram_encode.h io_lib/cram_decode.h io_lib/cram_codecs.h io_lib/cram_index.h io_lib/cram_stats.h io_lib/zfio.h '/<>/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/scram.h io_lib/bam.h io_lib/sam_header.h io_lib/dstring.h io_lib/string_alloc.h io_lib_config.h io_lib/md5.h io_lib/thread_pool.h io_lib/binning.h io_lib/bgzip.h '/<>/debian/tmp/usr/include/io_lib' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a mkdir -p /<>/debian/libstaden-read-dev/usr/bin mv /<>/debian/staden-io-lib-utils/usr/bin/io_lib-config /<>/debian/libstaden-read-dev/usr/bin # # Call d-shlibmove to comply with library packaging guide d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev "debian/tmp/usr/include" usr \ debian/tmp/usr/lib/*/libstaden-read.so Library package automatic movement utility --> libcurl4-gnutls-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libstaden-read13/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.13 debian/libstaden-read13/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.13.0.1 debian/libstaden-read13/usr/lib/x86_64-linux-gnu PKGDEV=libstaden-read-dev PKGSHL=libstaden-read13 install -d -m 755 debian/libstaden-read-dev/usr mv debian/tmp/usr/include debian/libstaden-read-dev/usr # # make sure io_lib-config --libs will not return -pie (see #825461) find debian/*/usr/bin -name io_lib-config -exec sed -i -e 's/ *-fPIE//' -e 's/ *-pie//' \{\} \; #dh_installman # manpages need some post editing but in case it could be automated, this code would help # mkdir -p # help2man --no-discard-stderr --no-info --help-option='""' \ # --name='filter SRF files for various purposes' \ # --version-string="" \ # /<>/debian//usr/bin/srf_filter > /srf_filter.1 make[1]: Leaving directory '/<>' debian/rules override_dh_install-indep make[1]: Entering directory '/<>' dh_install -i mkdir -p debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test for tst in `ls tests/*.test` ; do \ sed -e 's#\.\./$top_builddir/progs/#/usr/bin/#' -e 's#$top_builddir/progs/#/usr/bin/#' ${tst} > debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/`basename ${tst}` ; \ done # remove autogenerated big data files rm -f debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/data/ce\#*sorted.sam make[1]: Leaving directory '/<>' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel dh_lintian -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel debian/rules override_dh_fixperms-indep make[1]: Entering directory '/<>' dh_fixperms chmod +x debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/*.test debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/*.pl make[1]: Leaving directory '/<>' dh_fixperms -O--no-parallel -Nstaden-io-lib-examples dh_missing -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: Depends field of package staden-io-lib-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libstaden-read-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libstaden-read-dev (in debian/libstaden-read-dev); do_strip: , oemstrip: pkgstriptranslations: processing staden-io-lib-utils (in debian/staden-io-lib-utils); do_strip: , oemstrip: pkgstriptranslations: processing libstaden-read13-dbgsym (in debian/.debhelper/libstaden-read13/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libstaden-read-dev/DEBIAN/control, package libstaden-read-dev, directory debian/libstaden-read-dev INFO: pkgstripfiles: waiting for lock (libstaden-read-dev) ... pkgstripfiles: processing control file: debian/staden-io-lib-utils/DEBIAN/control, package staden-io-lib-utils, directory debian/staden-io-lib-utils .. removing usr/share/doc/staden-io-lib-utils/CHANGES.gz Searching for duplicated docs in dependency libstaden-read13... symlinking changelog.Debian.gz in staden-io-lib-utils to file in libstaden-read13 pkgstripfiles: processing control file: debian/.debhelper/libstaden-read13/dbgsym-root/DEBIAN/control, package libstaden-read13-dbgsym, directory debian/.debhelper/libstaden-read13/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package staden-io-lib-utils ... dpkg-deb: building package 'libstaden-read13-dbgsym' in 'debian/.debhelper/scratch-space/build-libstaden-read13/libstaden-read13-dbgsym_1.14.11-2_amd64.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'staden-io-lib-utils' in '../staden-io-lib-utils_1.14.11-2_amd64.deb'. Renaming libstaden-read13-dbgsym_1.14.11-2_amd64.deb to libstaden-read13-dbgsym_1.14.11-2_amd64.ddeb INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing staden-io-lib-examples (in debian/staden-io-lib-examples); do_strip: , oemstrip: pkgstriptranslations: processing staden-io-lib-utils-dbgsym (in debian/.debhelper/staden-io-lib-utils/dbgsym-root); do_strip: , oemstrip: Searching for duplicated docs in dependency libstaden-read13... symlinking changelog.Debian.gz in libstaden-read-dev to file in libstaden-read13 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libstaden-read-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libstaden-read-dev' in '../libstaden-read-dev_1.14.11-2_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/staden-io-lib-examples/DEBIAN/control, package staden-io-lib-examples, directory debian/staden-io-lib-examples INFO: pkgstripfiles: waiting for lock (staden-io-lib-examples) ... pkgstripfiles: processing control file: debian/.debhelper/staden-io-lib-utils/dbgsym-root/DEBIAN/control, package staden-io-lib-utils-dbgsym, directory debian/.debhelper/staden-io-lib-utils/dbgsym-root dpkg-deb: building package 'staden-io-lib-utils-dbgsym' in 'debian/.debhelper/scratch-space/build-staden-io-lib-utils/staden-io-lib-utils-dbgsym_1.14.11-2_amd64.deb'. Renaming staden-io-lib-utils-dbgsym_1.14.11-2_amd64.deb to staden-io-lib-utils-dbgsym_1.14.11-2_amd64.ddeb INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libstaden-read13 (in debian/libstaden-read13); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (staden-io-lib-examples) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libstaden-read13/DEBIAN/control, package libstaden-read13, directory debian/libstaden-read13 pkgstripfiles: Truncating usr/share/doc/libstaden-read13/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libstaden-read13 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libstaden-read13' in '../libstaden-read13_1.14.11-2_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/staden-io-lib-examples/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package staden-io-lib-examples ... pkgstripfiles: No PNG files. dpkg-deb: building package 'staden-io-lib-examples' in '../staden-io-lib-examples_1.14.11-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../staden-io-lib_1.14.11-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181202-1719 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ staden-io-lib_1.14.11-2_amd64.changes: -------------------------------------- Format: 1.8 Date: Sun, 02 Dec 2018 08:50:21 +0100 Source: staden-io-lib Binary: staden-io-lib-utils libstaden-read-dev libstaden-read13 staden-io-lib-examples Architecture: amd64 all Version: 1.14.11-2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libstaden-read-dev - development files for libstaden-read libstaden-read13 - Staden library for reading and writing DNA sequencing results staden-io-lib-examples - programs for manipulating DNA sequencing files (usage examples) staden-io-lib-utils - programs for manipulating DNA sequencing files Closes: 912451 Changes: staden-io-lib (1.14.11-2) unstable; urgency=medium . * Fix build on non-x86 architectures (thanks to James Bonfield ) Closes: #912451 * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright Checksums-Sha1: 49798c4586127e5e533fc19f010081d7d1f77356 330556 libstaden-read-dev_1.14.11-2_amd64.deb a62193624f6f72dd6d807f7ae3812c4fc433a47f 713176 libstaden-read13-dbgsym_1.14.11-2_amd64.ddeb 61bf635cdce3447bb85289629a9a1d491ebeec63 248012 libstaden-read13_1.14.11-2_amd64.deb bf585cac4dbd27f94944a4ea38f09400ef84a1f9 2720940 staden-io-lib-examples_1.14.11-2_all.deb 8438d1376c71545ab9fe4fc982ce88162c110412 400612 staden-io-lib-utils-dbgsym_1.14.11-2_amd64.ddeb 3c7d4136dfc6f4fbd6f9c2a5736bacb20ca3facc 135812 staden-io-lib-utils_1.14.11-2_amd64.deb f976ef4d23151b37530b240f98a2c671beee39ca 7645 staden-io-lib_1.14.11-2_amd64.buildinfo Checksums-Sha256: 84ac967778afcae41bc1f60c68f9c93afe5c409e48c0595a886f48d190c17955 330556 libstaden-read-dev_1.14.11-2_amd64.deb f479120fe77afb2457335616029c0735fa2914f193eaffb88851099655809e0d 713176 libstaden-read13-dbgsym_1.14.11-2_amd64.ddeb 6f62b05c6a94d42cc591f71987aba70ccb76f862edd46444e3678394da0b771a 248012 libstaden-read13_1.14.11-2_amd64.deb fa652b39f2900702fc6c51fde09677a5804f3e2df949c3e79aff1bdc60ff255a 2720940 staden-io-lib-examples_1.14.11-2_all.deb 308710a07346de1f9fb28e6cb21300eb54894caf2535e5cf9c89b85342f639c8 400612 staden-io-lib-utils-dbgsym_1.14.11-2_amd64.ddeb 31dba2fed25ede131760e07db773100a5055cd235c1dd744186e246ada97feb7 135812 staden-io-lib-utils_1.14.11-2_amd64.deb 08bafe7fbbf3908af40034a3bbdbf2cf761b6dde817b0a048e1ecb062de358a2 7645 staden-io-lib_1.14.11-2_amd64.buildinfo Files: faa9be9ae883710d167b61b1ec82c9de 330556 libdevel optional libstaden-read-dev_1.14.11-2_amd64.deb 2f7c894cafb4d9c8c6431a93aed1e607 713176 debug optional libstaden-read13-dbgsym_1.14.11-2_amd64.ddeb 6b9febc529b97202af5448e683e0379e 248012 libs optional libstaden-read13_1.14.11-2_amd64.deb b462db240627f7b8044c47077f78a102 2720940 science optional staden-io-lib-examples_1.14.11-2_all.deb 6c2ccfe2278d810db71788fce1b6604f 400612 debug optional staden-io-lib-utils-dbgsym_1.14.11-2_amd64.ddeb 8a10b1d15b115ac6cafc769a8722b56d 135812 science optional staden-io-lib-utils_1.14.11-2_amd64.deb 876322b6877f9e00bf229d10915b2501 7645 science optional staden-io-lib_1.14.11-2_amd64.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libstaden-read-dev_1.14.11-2_amd64.deb -------------------------------------- new debian package, version 2.0. size 330556 bytes: control archive=2372 bytes. 824 bytes, 19 lines control 3880 bytes, 60 lines md5sums Package: libstaden-read-dev Source: staden-io-lib Version: 1.14.11-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1326 Depends: libstaden-read13 (= 1.14.11-2) Section: libdevel Priority: optional Homepage: https://github.com/jkbonfield/io_lib Description: development files for libstaden-read This package contains the header and development files needed to build programs and packages using the Staden io_lib. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. drwxr-xr-x root/root 0 2018-12-02 07:50 ./ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/bin/ -rwxr-xr-x root/root 923 2018-12-02 07:50 ./usr/bin/io_lib-config drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/include/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/include/io_lib/ -rw-r--r-- root/root 10263 2018-12-02 07:50 ./usr/include/io_lib/Read.h -rw-r--r-- root/root 2471 2018-12-02 07:50 ./usr/include/io_lib/abi.h -rw-r--r-- root/root 2480 2018-12-02 07:50 ./usr/include/io_lib/alf.h -rw-r--r-- root/root 3536 2018-12-02 07:50 ./usr/include/io_lib/array.h -rw-r--r-- root/root 24693 2018-12-02 07:50 ./usr/include/io_lib/bam.h -rw-r--r-- root/root 2398 2018-12-02 07:50 ./usr/include/io_lib/bgzip.h -rw-r--r-- root/root 2075 2018-12-02 07:50 ./usr/include/io_lib/binning.h -rw-r--r-- root/root 6268 2018-12-02 07:50 ./usr/include/io_lib/compress.h -rw-r--r-- root/root 15348 2018-12-02 07:50 ./usr/include/io_lib/compression.h -rw-r--r-- root/root 2405 2018-12-02 07:50 ./usr/include/io_lib/cram.h -rw-r--r-- root/root 6269 2018-12-02 07:50 ./usr/include/io_lib/cram_codecs.h -rw-r--r-- root/root 3612 2018-12-02 07:50 ./usr/include/io_lib/cram_decode.h -rw-r--r-- root/root 3769 2018-12-02 07:50 ./usr/include/io_lib/cram_encode.h -rw-r--r-- root/root 3365 2018-12-02 07:50 ./usr/include/io_lib/cram_index.h -rw-r--r-- root/root 25847 2018-12-02 07:50 ./usr/include/io_lib/cram_io.h -rw-r--r-- root/root 2481 2018-12-02 07:50 ./usr/include/io_lib/cram_stats.h -rw-r--r-- root/root 30065 2018-12-02 07:50 ./usr/include/io_lib/cram_structs.h -rw-r--r-- root/root 4951 2018-12-02 07:50 ./usr/include/io_lib/deflate_interlaced.h -rw-r--r-- root/root 9589 2018-12-02 07:50 ./usr/include/io_lib/dstring.h -rw-r--r-- root/root 2430 2018-12-02 07:50 ./usr/include/io_lib/error.h -rw-r--r-- root/root 10646 2018-12-02 07:50 ./usr/include/io_lib/expFileIO.h -rw-r--r-- root/root 2392 2018-12-02 07:50 ./usr/include/io_lib/fpoint.h -rw-r--r-- root/root 6952 2018-12-02 07:50 ./usr/include/io_lib/hash_table.h -rw-r--r-- root/root 6145 2018-12-02 07:50 ./usr/include/io_lib/io_lib_config.h -rw-r--r-- root/root 923 2018-12-02 07:50 ./usr/include/io_lib/jenkins_lookup3.h -rw-r--r-- root/root 2969 2018-12-02 07:50 ./usr/include/io_lib/mFILE.h -rw-r--r-- root/root 6459 2018-12-02 07:50 ./usr/include/io_lib/mach-io.h -rw-r--r-- root/root 1479 2018-12-02 07:50 ./usr/include/io_lib/md5.h -rw-r--r-- root/root 6841 2018-12-02 07:50 ./usr/include/io_lib/misc.h -rw-r--r-- root/root 5965 2018-12-02 07:50 ./usr/include/io_lib/open_trace_file.h -rw-r--r-- root/root 10487 2018-12-02 07:50 ./usr/include/io_lib/os.h -rw-r--r-- root/root 4216 2018-12-02 07:50 ./usr/include/io_lib/plain.h -rw-r--r-- root/root 2183 2018-12-02 07:50 ./usr/include/io_lib/pooled_alloc.h -rw-r--r-- root/root 13970 2018-12-02 07:50 ./usr/include/io_lib/sam_header.h -rw-r--r-- root/root 13901 2018-12-02 07:50 ./usr/include/io_lib/scf.h -rw-r--r-- root/root 4238 2018-12-02 07:50 ./usr/include/io_lib/scf_extras.h -rw-r--r-- root/root 8055 2018-12-02 07:50 ./usr/include/io_lib/scram.h -rw-r--r-- root/root 8453 2018-12-02 07:50 ./usr/include/io_lib/seqIOABI.h -rw-r--r-- root/root 3793 2018-12-02 07:50 ./usr/include/io_lib/sff.h -rw-r--r-- root/root 7141 2018-12-02 07:50 ./usr/include/io_lib/srf.h -rw-r--r-- root/root 3350 2018-12-02 07:50 ./usr/include/io_lib/stdio_hack.h -rw-r--r-- root/root 2423 2018-12-02 07:50 ./usr/include/io_lib/string_alloc.h -rw-r--r-- root/root 3253 2018-12-02 07:50 ./usr/include/io_lib/tar_format.h -rw-r--r-- root/root 6759 2018-12-02 07:50 ./usr/include/io_lib/thread_pool.h -rw-r--r-- root/root 5383 2018-12-02 07:50 ./usr/include/io_lib/traceType.h -rw-r--r-- root/root 7365 2018-12-02 07:50 ./usr/include/io_lib/translate.h -rw-r--r-- root/root 3578 2018-12-02 07:50 ./usr/include/io_lib/vlen.h -rw-r--r-- root/root 2562 2018-12-02 07:50 ./usr/include/io_lib/xalloc.h -rw-r--r-- root/root 2118 2018-12-02 07:50 ./usr/include/io_lib/zfio.h -rw-r--r-- root/root 8081 2018-12-02 07:50 ./usr/include/io_lib/ztr.h drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 942436 2018-12-02 07:50 ./usr/lib/x86_64-linux-gnu/libstaden-read.a lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/lib/x86_64-linux-gnu/libstaden-read.so -> libstaden-read.so.13.0.1 drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/doc/libstaden-read-dev/ lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/doc/libstaden-read-dev/changelog.Debian.gz -> ../libstaden-read13/changelog.Debian.gz -rw-r--r-- root/root 7382 2018-12-02 07:50 ./usr/share/doc/libstaden-read-dev/copyright drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/man/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/man/man3/ -rw-r--r-- root/root 2119 2018-12-02 07:50 ./usr/share/man/man3/ExperimentFile.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/exp2read.3.gz -> scf2read.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/fread_reading.3.gz -> read_reading.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/fread_scf.3.gz -> read_scf.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/fwrite_reading.3.gz -> write_reading.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/fwrite_scf.3.gz -> write_scf.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/read2exp.3.gz -> scf2read.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/read2scf.3.gz -> scf2read.3.gz -rw-r--r-- root/root 591 2018-12-02 07:50 ./usr/share/man/man3/read_allocate.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/read_deallocate.3.gz -> read_allocate.3.gz -rw-r--r-- root/root 1550 2018-12-02 07:50 ./usr/share/man/man3/read_reading.3.gz -rw-r--r-- root/root 610 2018-12-02 07:50 ./usr/share/man/man3/read_scf.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/read_scf_header.3.gz -> read_scf.3.gz -rw-r--r-- root/root 783 2018-12-02 07:50 ./usr/share/man/man3/scf2read.3.gz -rw-r--r-- root/root 804 2018-12-02 07:50 ./usr/share/man/man3/write_reading.3.gz -rw-r--r-- root/root 608 2018-12-02 07:50 ./usr/share/man/man3/write_scf.3.gz lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man3/write_scf_header.3.gz -> write_scf.3.gz drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/man/man4/ lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/share/man/man4/Read.4.gz -> ../man3/read_reading.3.gz libstaden-read13_1.14.11-2_amd64.deb ------------------------------------ new debian package, version 2.0. size 248012 bytes: control archive=1108 bytes. 1007 bytes, 21 lines control 244 bytes, 3 lines md5sums 35 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libstaden-read13 Source: staden-io-lib Version: 1.14.11-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 583 Depends: libc6 (>= 2.15), libcurl3-gnutls (>= 7.16.2), zlib1g (>= 1:1.2.0.2) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/jkbonfield/io_lib Description: Staden library for reading and writing DNA sequencing results This package contains the Staden io_lib, that is renamed in Debian and Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. drwxr-xr-x root/root 0 2018-12-02 07:50 ./ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2018-12-02 07:50 ./usr/lib/x86_64-linux-gnu/libstaden-read.so.13 -> libstaden-read.so.13.0.1 -rw-r--r-- root/root 574160 2018-12-02 07:50 ./usr/lib/x86_64-linux-gnu/libstaden-read.so.13.0.1 drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/doc/libstaden-read13/ -rw-r--r-- root/root 990 2018-12-02 07:50 ./usr/share/doc/libstaden-read13/changelog.Debian.gz -rw-r--r-- root/root 7382 2018-12-02 07:50 ./usr/share/doc/libstaden-read13/copyright staden-io-lib-examples_1.14.11-2_all.deb ---------------------------------------- new debian package, version 2.0. size 2720940 bytes: control archive=3180 bytes. 1064 bytes, 23 lines control 7840 bytes, 88 lines md5sums Package: staden-io-lib-examples Source: staden-io-lib Version: 1.14.11-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2786 Recommends: staden-io-lib-utils Section: science Priority: optional Homepage: https://github.com/jkbonfield/io_lib Description: programs for manipulating DNA sequencing files (usage examples) The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. . 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Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 703 Depends: libc6 (>= 2.14), libstaden-read13 Suggests: staden-io-lib-examples Section: science Priority: optional Homepage: https://github.com/jkbonfield/io_lib Description: programs for manipulating DNA sequencing files The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. drwxr-xr-x root/root 0 2018-12-02 07:50 ./ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/bin/ -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/append_sff -rwxr-xr-x root/root 18600 2018-12-02 07:50 ./usr/bin/convert_trace -rwxr-xr-x root/root 30712 2018-12-02 07:50 ./usr/bin/cram_dump -rwxr-xr-x root/root 26616 2018-12-02 07:50 ./usr/bin/cram_filter -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/cram_index -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/cram_size -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/extract_fastq -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/extract_qual -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/extract_seq 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2018-12-02 07:50 ./usr/bin/scramble -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/srf2fasta -rwxr-xr-x root/root 18424 2018-12-02 07:50 ./usr/bin/srf2fastq -rwxr-xr-x root/root 34808 2018-12-02 07:50 ./usr/bin/srf_dump_all -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/srf_extract_hash -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/srf_extract_linear -rwxr-xr-x root/root 30712 2018-12-02 07:50 ./usr/bin/srf_filter -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/srf_index_hash -rwxr-xr-x root/root 26616 2018-12-02 07:50 ./usr/bin/srf_info -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/srf_list -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/trace_dump -rwxr-xr-x root/root 14328 2018-12-02 07:50 ./usr/bin/ztr_dump drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/ drwxr-xr-x root/root 0 2018-12-02 07:50 ./usr/share/doc-base/ -rw-r--r-- root/root 304 2018-12-02 07:50 ./usr/share/doc-base/staden-io-lib-hash-file-format -rw-r--r-- root/root 349 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 708340 Build-Time: 387 Distribution: disco-proposed Host Architecture: amd64 Install-Time: 14 Job: staden-io-lib_1.14.11-2.dsc Machine Architecture: amd64 Package: staden-io-lib Package-Time: 402 Source-Version: 1.14.11-2 Space: 708340 Status: successful Version: 1.14.11-2 -------------------------------------------------------------------------------- Finished at 20181202-1719 Build needed 00:06:42, 708340k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15731059 Scanning for processes to kill in build PACKAGEBUILD-15731059