RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lcy01-05 3.13.0-86-generic #131-Ubuntu SMP Thu May 12 23:33:13 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.6 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.24. Syncing the system clock with the buildd NTP service... 27 May 23:20:00 ntpdate[1670]: adjust time server 10.211.37.1 offset -0.019471 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9821313', '/home/buildd/filecache-default/063eeb43ee0a3186cd7a3c6a3a452f2f4c9a8d95'] Unpacking chroot for build PACKAGEBUILD-9821313 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9821313'] Mounting chroot for build PACKAGEBUILD-9821313 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9821313', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9821313 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9821313', 'amd64'] Updating debian chroot for build PACKAGEBUILD-9821313 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 Packages [1197 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [565 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe amd64 Packages [7737 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4426 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main amd64 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe amd64 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main amd64 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe amd64 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 Packages [82.9 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [30.4 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 Packages [390 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [162 kB] Fetched 15.1 MB in 13s (1155 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libpng16-16 libprocps5 The following packages will be upgraded: apt apt-transport-https bash binutils bsdutils bzip2 cpp-5 debconf dmsetup dpkg dpkg-dev g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers initscripts insserv libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libblkid1 libbz2-1.0 libcap2 libcap2-bin libcc1-0 libcilkrts5 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libldap-2.4-2 liblsan0 libmount1 libmpx0 libncurses5 libncursesw5 libperl5.22 libpng12-0 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev lsb-base make mount ncurses-base ncurses-bin optipng perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps sed systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata ubuntu-keyring util-linux zlib1g 101 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 104 MB of archives. After this operation, 244 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main amd64 bash amd64 4.3-14ubuntu2 [593 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdutils amd64 1:2.28-5ubuntu2 [54.9 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg amd64 1.18.7ubuntu1 [2143 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 grep amd64 2.25-1 [153 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 hostname amd64 3.17ubuntu1 [11.7 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-modules-5.22 all 5.22.2-1 [2642 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 libperl5.22 amd64 5.22.2-1 [3391 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl amd64 5.22.2-1 [237 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-base amd64 5.22.2-1 [1300 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 bzip2 amd64 1.0.6-8build1 [33.5 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-1.0 amd64 1.0.6-8build1 [30.6 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu5 [51.1 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 init-system-helpers all 1.33ubuntu2 [31.9 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 init amd64 1.33ubuntu2 [4350 B] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsmartcols1 amd64 2.28-5ubuntu2 [64.6 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 libuuid1 amd64 2.28-5ubuntu2 [15.2 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblkid1 amd64 2.28-5ubuntu2 [106 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfdisk1 amd64 2.28-5ubuntu2 [138 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 insserv amd64 1.14.0-5.3ubuntu1 [37.9 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysv-rc all 2.88dsf-59.4ubuntu1 [18.2 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 initscripts amd64 2.88dsf-59.4ubuntu1 [23.9 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 util-linux amd64 2.28-5ubuntu2 [888 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysvinit-utils amd64 2.88dsf-59.4ubuntu1 [21.7 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 debconf all 1.5.59ubuntu1 [136 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgpg-error0 amd64 1.22-2 [34.4 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcrypt20 amd64 1.7.0-2 [397 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libsystemd0 amd64 230-1git1 [213 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 systemd amd64 230-1git1 [3599 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcap2 amd64 1:2.25-1 [13.3 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 libselinux1 amd64 2.5-3 [65.3 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmount1 amd64 2.28-5ubuntu2 [116 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libcap2-bin amd64 1:2.25-1 [20.1 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 lsb-base all 9.20160110ubuntu1 [13.7 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main amd64 mount amd64 2.28-5ubuntu2 [123 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 ncurses-bin amd64 6.0+20160319-1ubuntu1 [136 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main amd64 sed amd64 4.2.2-7.1 [140 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 tar amd64 1.29-1 [221 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 ncurses-base all 6.0+20160319-1ubuntu1 [16.7 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-6-base amd64 6.1.1-4ubuntu11 [17.0 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc1 amd64 1:6.1.1-4ubuntu11 [38.6 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++6 amd64 6.1.1-4ubuntu11 [400 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main amd64 libapt-pkg5.0 amd64 1.3~exp1 [707 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main amd64 ubuntu-keyring all 2016.05.13 [16.5 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt amd64 1.3~exp1 [1035 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 systemd-sysv amd64 230-1git1 [17.9 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libudev1 amd64 230-1git1 [60.5 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdevmapper1.02.1 amd64 2:1.02.124-1ubuntu1 [148 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libncurses5 amd64 6.0+20160319-1ubuntu1 [93.9 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libtinfo5 amd64 6.0+20160319-1ubuntu1 [76.7 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libncursesw5 amd64 6.0+20160319-1ubuntu1 [115 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsepol1 amd64 2.5-1 [216 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsemanage-common all 2.5-1 [6800 B] Get:53 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsemanage1 amd64 2.5-1 [80.3 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main amd64 libusb-0.1-4 amd64 2:0.1.12-30 [17.2 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main amd64 libprocps5 amd64 2:3.3.11-3ubuntu1 [30.5 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main amd64 procps amd64 2:3.3.11-3ubuntu1 [222 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main amd64 tzdata all 2016d-2 [168 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtasn1-6 amd64 4.8-1 [42.5 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgnutls30 amd64 3.4.11-4ubuntu1 [548 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main amd64 libslang2 amd64 2.3.0-2.3ubuntu1 [414 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsqlite3-0 amd64 3.13.0-1 [478 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt-transport-https amd64 1.3~exp1 [26.1 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160515+dfsg-1 [41.1 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160515+dfsg-1 [174 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160515+dfsg-1 [29.4 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160515+dfsg-1 [88.0 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160515+dfsg-1 [48.3 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160515+dfsg-1 [107 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160515+dfsg-1 [203 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160515+dfsg-1 [15.1 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160515+dfsg-1 [96.7 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [14.5 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [48.7 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu4 [161 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpng16-16 amd64 1.6.21-5 [172 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main amd64 binutils amd64 2.26-9ubuntu1 [2419 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main amd64 libquadmath0 amd64 6.1.1-4ubuntu11 [132 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgomp1 amd64 6.1.1-4ubuntu11 [74.0 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main amd64 libitm1 amd64 6.1.1-4ubuntu11 [28.0 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main amd64 libatomic1 amd64 6.1.1-4ubuntu11 [9172 B] Get:82 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasan2 amd64 5.3.1-20ubuntu1 [264 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblsan0 amd64 6.1.1-4ubuntu11 [116 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtsan0 amd64 6.1.1-4ubuntu11 [260 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main amd64 libubsan0 amd64 6.1.1-4ubuntu11 [107 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcilkrts5 amd64 6.1.1-4ubuntu11 [40.8 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpx0 amd64 5.3.1-20ubuntu1 [9742 B] Get:88 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++-5 amd64 5.3.1-20ubuntu1 [32.3 MB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5 amd64 5.3.1-20ubuntu1 [8575 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++-5-dev amd64 5.3.1-20ubuntu1 [1403 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc-5-dev amd64 5.3.1-20ubuntu1 [2228 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcc1-0 amd64 6.1.1-4ubuntu11 [31.1 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp-5 amd64 5.3.1-20ubuntu1 [30.1 MB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5-base amd64 5.3.1-20ubuntu1 [16.9 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main amd64 dmsetup amd64 2:1.02.124-1ubuntu1 [72.0 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg-dev all 1.18.7ubuntu1 [666 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdpkg-perl all 1.18.7ubuntu1 [202 kB] Get:98 http://ftpmaster.internal/ubuntu yakkety/main amd64 make amd64 4.1-9 [154 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpng12-0 amd64 1.2.54-6ubuntu1 [116 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/main amd64 linux-libc-dev amd64 4.4.0-23.41 [840 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety/main amd64 optipng amd64 0.7.6-1build1 [81.9 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety/main amd64 pkgbinarymangler all 130 [43.2 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety/main amd64 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 104 MB in 10s (9887 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12166 files and directories currently installed.) Preparing to unpack .../bash_4.3-14ubuntu2_amd64.deb ... Unpacking bash (4.3-14ubuntu2) over (4.3-14ubuntu1) ... Setting up bash (4.3-14ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 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Setting up zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12177 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.33ubuntu2_all.deb ... Unpacking init-system-helpers (1.33ubuntu2) over (1.29ubuntu1) ... Setting up init-system-helpers (1.33ubuntu2) ... (Reading database ... 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Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Failed to enable: No such file or directory. Removing obsolete conffile /etc/systemd/bootchart.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12182 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.3~exp1_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.3~exp1) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libapt-pkg5.0:amd64 (1.3~exp1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12182 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.05.13_all.deb ... Unpacking ubuntu-keyring (2016.05.13) over (2012.05.19) ... Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 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Setting up libtinfo5:amd64 (6.0+20160319-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12182 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20160319-1ubuntu1_amd64.deb ... Unpacking libncursesw5:amd64 (6.0+20160319-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libncursesw5:amd64 (6.0+20160319-1ubuntu1) ... 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Setting up libperl5.22:amd64 (5.22.2-1) ... Setting up perl (5.22.2-1) ... Setting up bzip2 (1.0.6-8build1) ... Setting up insserv (1.14.0-5.3ubuntu1) ... Setting up sysvinit-utils (2.88dsf-59.4ubuntu1) ... Setting up sysv-rc (2.88dsf-59.4ubuntu1) ... Setting up initscripts (2.88dsf-59.4ubuntu1) ... Installing new version of config file /etc/init.d/ondemand ... Installing new version of config file /etc/init.d/sendsigs ... Installing new version of config file /etc/init.d/umountroot ... Setting up libncurses5:amd64 (6.0+20160319-1ubuntu1) ... Setting up libprocps5:amd64 (2:3.3.11-3ubuntu1) ... Setting up procps (2:3.3.11-3ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up tzdata (2016d-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri May 27 23:21:04 UTC 2016. Universal Time is now: Fri May 27 23:21:04 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libtasn1-6:amd64 (4.8-1) ... Setting up libgnutls30:amd64 (3.4.11-4ubuntu1) ... Setting up libslang2:amd64 (2.3.0-2.3ubuntu1) ... Setting up libsqlite3-0:amd64 (3.13.0-1) ... Setting up apt-transport-https (1.3~exp1) ... Setting up libroken18-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libasn1-8-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libheimbase1-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libhcrypto4-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libwind0-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20160515+dfsg-1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu4) ... Setting up libpng16-16:amd64 (1.6.21-5) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up binutils (2.26-9ubuntu1) ... Setting up libquadmath0:amd64 (6.1.1-4ubuntu11) ... Setting up libgomp1:amd64 (6.1.1-4ubuntu11) ... Setting up libitm1:amd64 (6.1.1-4ubuntu11) ... Setting up libatomic1:amd64 (6.1.1-4ubuntu11) ... Setting up gcc-5-base:amd64 (5.3.1-20ubuntu1) ... Setting up libasan2:amd64 (5.3.1-20ubuntu1) ... Setting up liblsan0:amd64 (6.1.1-4ubuntu11) ... Setting up libtsan0:amd64 (6.1.1-4ubuntu11) ... Setting up libubsan0:amd64 (6.1.1-4ubuntu11) ... Setting up libcilkrts5:amd64 (6.1.1-4ubuntu11) ... Setting up libmpx0:amd64 (5.3.1-20ubuntu1) ... Setting up cpp-5 (5.3.1-20ubuntu1) ... Setting up libcc1-0:amd64 (6.1.1-4ubuntu11) ... Setting up libgcc-5-dev:amd64 (5.3.1-20ubuntu1) ... Setting up gcc-5 (5.3.1-20ubuntu1) ... Setting up libstdc++-5-dev:amd64 (5.3.1-20ubuntu1) ... Setting up g++-5 (5.3.1-20ubuntu1) ... Setting up dmsetup (2:1.02.124-1ubuntu1) ... Setting up libdpkg-perl (1.18.7ubuntu1) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.7ubuntu1) ... Setting up libpng12-0:amd64 (1.2.54-6ubuntu1) ... Setting up linux-libc-dev:amd64 (4.4.0-23.41) ... Setting up optipng (0.7.6-1build1) ... Setting up pkgbinarymangler (130) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (230-1git1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9821313', 'amd64', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=yakkety-proposed', '--purge=never', '--nolog', '-A', 'staden-io-lib_1.14.8-2.dsc'] Initiating build PACKAGEBUILD-9821313 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-86-generic #131-Ubuntu SMP Thu May 12 23:33:13 UTC 2016 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lcy01-05.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ staden-io-lib 1.14.8-2 (amd64) 27 May 2016 23:21 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: staden-io-lib Version: 1.14.8-2 Source Version: 1.14.8-2 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/staden-io-lib-9EmHJO/staden-io-lib-1.14.8' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/staden-io-lib-9EmHJO' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9821313/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── staden-io-lib_1.14.8-2.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-aN2wnV/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-aN2wnV/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-aN2wnV/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-aN2wnV/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-aN2wnV/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-aN2wnV/apt_archive ./ Packages [525 B] Fetched 2852 B in 0s (232 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-aN2wnV/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-aN2wnV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12228 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, d-shlibs Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, d-shlibs dpkg-deb: building package 'sbuild-build-depends-staden-io-lib-dummy' in '/«BUILDDIR»/resolver-h3TBh8/apt_archive/sbuild-build-depends-staden-io-lib-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-h3TBh8/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-h3TBh8/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-h3TBh8/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-h3TBh8/apt_archive ./ Sources [462 B] Get:5 copy:/«BUILDDIR»/resolver-h3TBh8/apt_archive ./ Packages [729 B] Fetched 3310 B in 0s (192 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-h3TBh8/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install staden-io-lib build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libcurl4-gnutls-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libcurl4-doc libcurl3-dbg libgnutls-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev pkg-config libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libcurl4-gnutls-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-staden-io-lib-dummy zlib1g-dev 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 16.7 MB of archives. After this operation, 63.9 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-staden-io-lib-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-h3TBh8/apt_archive ./ sbuild-build-depends-staden-io-lib-dummy 0.invalid.0 [970 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 groff-base amd64 1.22.3-7 [1151 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmagic1 amd64 1:5.25-2ubuntu1 [216 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 file amd64 1:5.25-2ubuntu1 [21.2 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3 [6412 B] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext-base amd64 0.19.7-2ubuntu3 [47.9 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 libglib2.0-0 amd64 2.48.1-1 [1119 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 libicu57 amd64 57.1-1 [7690 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxml2 amd64 2.9.3+dfsg1-1build1 [695 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsigsegv2 amd64 2.10-5 [14.1 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 autoconf all 2.69-10 [321 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 autotools-dev all 20160430.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/universe amd64 d-shlibs all 0.74ubuntu2 [9300 B] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext amd64 0.19.7-2ubuntu3 [1076 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 po-debconf all 1.0.19 [234 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libarchive-zip-perl all 1.57-1 [84.0 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-stripnondeterminism-perl all 0.016-1 [11.0 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-strip-nondeterminism all 0.016-1 [4858 B] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtool all 2.4.6-0.1 [193 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-autoreconf all 12 [15.8 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 debhelper all 9.20160403ubuntu1 [711 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcurl4-gnutls-dev amd64 7.47.0-1ubuntu2 [260 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu5 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.7 MB in 0s (24.8 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12228 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_amd64.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_amd64.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package libasprintf0v5:amd64. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_amd64.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.48.1-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.48.1-1) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../libicu57_57.1-1_amd64.deb ... Unpacking libicu57:amd64 (57.1-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.3+dfsg1-1build1_amd64.deb ... Unpacking libxml2:amd64 (2.9.3+dfsg1-1build1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-5_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-5_amd64.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... 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Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.6-0.1_all.deb ... Unpacking libtool (2.4.6-0.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20160403ubuntu1_all.deb ... Unpacking debhelper (9.20160403ubuntu1) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../libcurl4-gnutls-dev_7.47.0-1ubuntu2_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (7.47.0-1ubuntu2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu5_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Selecting previously unselected package sbuild-build-depends-staden-io-lib-dummy. Preparing to unpack .../sbuild-build-depends-staden-io-lib-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-staden-io-lib-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:amd64 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:amd64 (2.48.1-1) ... No schema files found: doing nothing. Setting up libicu57:amd64 (57.1-1) ... Setting up libxml2:amd64 (2.9.3+dfsg1-1build1) ... Setting up libsigsegv2:amd64 (2.10-5) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-10) ... Setting up autotools-dev (20160430.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up d-shlibs (0.74ubuntu2) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.57-1) ... Setting up libfile-stripnondeterminism-perl (0.016-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up libcurl4-gnutls-dev:amd64 (7.47.0-1ubuntu2) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up sbuild-build-depends-staden-io-lib-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.016-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-86-generic amd64 (x86_64) Toolchain package versions: binutils_2.26-9ubuntu1 dpkg-dev_1.18.7ubuntu1 g++-5_5.3.1-20ubuntu1 gcc-5_5.3.1-20ubuntu1 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-20ubuntu1 libstdc++6_6.1.1-4ubuntu11 linux-libc-dev_4.4.0-23.41 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~exp1 apt-transport-https_1.3~exp1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 binutils_2.26-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-20ubuntu1 d-shlibs_0.74ubuntu2 dash_0.5.8-2.1ubuntu2 debconf_1.5.59ubuntu1 debhelper_9.20160403ubuntu1 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.124-1ubuntu1 dpkg_1.18.7ubuntu1 dpkg-dev_1.18.7ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-20ubuntu1 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-20ubuntu1 gcc-5-base_5.3.1-20ubuntu1 gcc-6-base_6.1.1-4ubuntu11 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.17ubuntu1 init_1.33ubuntu2 init-system-helpers_1.33ubuntu2 initscripts_2.88dsf-59.4ubuntu1 insserv_1.14.0-5.3ubuntu1 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.3~exp1 libarchive-zip-perl_1.57-1 libasan2_5.3.1-20ubuntu1 libasn1-8-heimdal_1.7~git20160515+dfsg-1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-4ubuntu11 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.28-5ubuntu2 libbz2-1.0_1.0.6-8build1 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-4ubuntu11 libcilkrts5_6.1.1-4ubuntu11 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.47.0-1ubuntu2 libcurl4-gnutls-dev_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.124-1ubuntu1 libdpkg-perl_1.18.7ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.28-5ubuntu2 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgcc-5-dev_5.3.1-20ubuntu1 libgcc1_1:6.1.1-4ubuntu11 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.11-4ubuntu1 libgomp1_6.1.1-4ubuntu11 libgpg-error0_1.22-2 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20160515+dfsg-1 libhcrypto4-heimdal_1.7~git20160515+dfsg-1 libheimbase1-heimdal_1.7~git20160515+dfsg-1 libheimntlm0-heimdal_1.7~git20160515+dfsg-1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20160515+dfsg-1 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libisl15_0.16.1-1 libitm1_6.1.1-4ubuntu11 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20160515+dfsg-1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.1.1-4ubuntu11 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.28-5ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libmpx0_5.3.1-20ubuntu1 libncurses5_6.0+20160319-1ubuntu1 libncursesw5_6.0+20160319-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-5 libprocps4_2:3.3.10-4ubuntu2 libprocps5_2:3.3.11-3ubuntu1 libquadmath0_6.1.1-4ubuntu11 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160515+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28-5ubuntu2 libsqlite3-0_3.13.0-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-20ubuntu1 libstdc++6_6.1.1-4ubuntu11 libsystemd0_230-1git1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-1ubuntu1 libtool_2.4.6-0.1 libtsan0_6.1.1-4ubuntu11 libubsan0_6.1.1-4ubuntu11 libudev1_230-1git1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu2 libwind0-heimdal_1.7~git20160515+dfsg-1 libxml2_2.9.3+dfsg1-1build1 linux-libc-dev_4.4.0-23.41 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110ubuntu1 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28-5ubuntu2 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160319-1ubuntu1 ncurses-bin_6.0+20160319-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.11-3ubuntu1 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-staden-io-lib-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_230-1git1 systemd-sysv_230-1git1 sysv-rc_2.88dsf-59.4ubuntu1 sysvinit-utils_2.88dsf-59.4ubuntu1 tar_1.29-1 tzdata_2016d-2 ubuntu-keyring_2016.05.13 util-linux_2.28-5ubuntu2 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Fri May 27 14:09:35 2016 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./staden-io-lib_1.14.8-2.dsc dpkg-source: info: extracting staden-io-lib in staden-io-lib-1.14.8 dpkg-source: info: unpacking staden-io-lib_1.14.8.orig.tar.gz dpkg-source: info: unpacking staden-io-lib_1.14.8-2.debian.tar.xz dpkg-source: info: applying pathmax.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package staden-io-lib dpkg-buildpackage: info: source version 1.14.8-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build staden-io-lib-1.14.8 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_clean rm -f tests/.done tests/data/ce\#sorted.sam tests/data/ce\#unsorted.sam make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autoreconf_clean dh_clean debian/rules build dh build --with autoreconf dh_testdir dh_update_autotools_config dh_autoreconf aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.in, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:64: installing './compile' configure.in:4: installing './missing' io_lib/Makefile.am:141: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' io_lib/Makefile.am: installing './depcomp' progs/Makefile.am:147: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tests/Makefile.am:60: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for C compiler warning flags... -Wall checking for gawk... (cached) mawk checking for curl-config... /usr/bin/curl-config checking for the version of libcurl... 7.47.0 checking whether libcurl just needs -lcurl... yes checking whether libcurl is usable... yes checking for curl_free... yes checking for inflateEnd in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gethostbyname... none required checking for library containing socket... none required checking for BZ2_bzBuffToBuffCompress in -lbz2... no checking for lzma_easy_buffer_encode in -llzma... no checking whether byte ordering is bigendian... no checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking for zlib.h... (cached) yes checking stdio_ext.h usability... yes checking stdio_ext.h presence... yes checking for stdio_ext.h... yes checking whether byte ordering is bigendian... (cached) no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking for inline... inline checking for mode_t... yes checking for fileno... yes checking for fstat... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for library containing pthread_join... -lpthread checking for library containing cos... -lm checking for strdup... yes checking for fsync... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating io_lib/Makefile config.status: creating progs/Makefile config.status: creating tests/Makefile config.status: creating io_lib-config config.status: creating io_lib/os.h config.status: creating io_lib_config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j1 make[1]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»' Making all in io_lib make[3]: Entering directory '/«PKGBUILDDIR»/io_lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c Read.c -fPIE -o libstaden_read_la-Read.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c scf_extras.c -fPIE -o libstaden_read_la-scf_extras.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIE -o libstaden_read_la-translate.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c compression.c -fPIE -o libstaden_read_la-compression.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c ztr.c -fPIE -o libstaden_read_la-ztr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-ztr_translate.lo `test -f 'ztr_translate.c' || echo './'`ztr_translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c ztr_translate.c -fPIE -o libstaden_read_la-ztr_translate.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-deflate_interlaced.lo `test -f 'deflate_interlaced.c' || echo './'`deflate_interlaced.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c deflate_interlaced.c -fPIC -DPIC -o .libs/libstaden_read_la-deflate_interlaced.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c deflate_interlaced.c -fPIE -o libstaden_read_la-deflate_interlaced.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-fpoint.lo `test -f 'fpoint.c' || echo './'`fpoint.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c fpoint.c -fPIC -DPIC -o .libs/libstaden_read_la-fpoint.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c fpoint.c -fPIE -o libstaden_read_la-fpoint.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-seqIOABI.lo `test -f 'seqIOABI.c' || echo './'`seqIOABI.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c seqIOABI.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOABI.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c seqIOABI.c -fPIE -o libstaden_read_la-seqIOABI.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-seqIOALF.lo `test -f 'seqIOALF.c' || echo './'`seqIOALF.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c seqIOALF.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOALF.o libtool: compile: gcc -DHAVE_CONFIG_H -I. 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-DPIC -o .libs/libstaden_read_la-cram_encode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_encode.c -fPIE -o libstaden_read_la-cram_encode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-cram_decode.lo `test -f 'cram_decode.c' || echo './'`cram_decode.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_decode.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_decode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_decode.c -fPIE -o libstaden_read_la-cram_decode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-cram_stats.lo `test -f 'cram_stats.c' || echo './'`cram_stats.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_stats.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_stats.c -fPIE -o libstaden_read_la-cram_stats.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-cram_io.lo `test -f 'cram_io.c' || echo 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-I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c scram.c -fPIC -DPIC -o .libs/libstaden_read_la-scram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c scram.c -fPIE -o libstaden_read_la-scram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-thread_pool.lo `test -f 'thread_pool.c' || echo './'`thread_pool.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c thread_pool.c -fPIC -DPIC -o .libs/libstaden_read_la-thread_pool.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c thread_pool.c -fPIE -o libstaden_read_la-thread_pool.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-binning.lo `test -f 'binning.c' || echo './'`binning.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c binning.c -fPIC -DPIC -o .libs/libstaden_read_la-binning.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c binning.c -fPIE -o libstaden_read_la-binning.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_bambam.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_bambam.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c cram_bambam.c -fPIE -o libstaden_read_la-cram_bambam.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -version-info 11:6:0 -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libstaden-read.la -rpath /usr/lib/x86_64-linux-gnu libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo libstaden_read_la-bam.lo libstaden_read_la-sam_header.lo libstaden_read_la-rANS_static.lo libstaden_read_la-cram_codecs.lo libstaden_read_la-cram_encode.lo libstaden_read_la-cram_decode.lo libstaden_read_la-cram_stats.lo libstaden_read_la-cram_io.lo libstaden_read_la-cram_index.lo libstaden_read_la-zfio.lo libstaden_read_la-dstring.lo libstaden_read_la-string_alloc.lo libstaden_read_la-md5.lo libstaden_read_la-crc32.lo libstaden_read_la-scram.lo libstaden_read_la-thread_pool.lo libstaden_read_la-binning.lo libstaden_read_la-cram_bambam.lo -lz -lcurl -lm -lpthread libtool: link: gcc -shared -fPIC -DPIC .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-rANS_static.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-crc32.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o .libs/libstaden_read_la-binning.o .libs/libstaden_read_la-cram_bambam.o -lz /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lm -lpthread -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libstaden-read.so.11 -o .libs/libstaden-read.so.11.0.6 libtool: link: (cd ".libs" && rm -f "libstaden-read.so.11" && ln -s "libstaden-read.so.11.0.6" "libstaden-read.so.11") libtool: link: (cd ".libs" && rm -f "libstaden-read.so" && ln -s "libstaden-read.so.11.0.6" "libstaden-read.so") libtool: link: ar cru .libs/libstaden-read.a libstaden_read_la-Read.o libstaden_read_la-scf_extras.o libstaden_read_la-translate.o libstaden_read_la-compression.o libstaden_read_la-ztr.o libstaden_read_la-ztr_translate.o libstaden_read_la-deflate_interlaced.o libstaden_read_la-fpoint.o libstaden_read_la-seqIOABI.o libstaden_read_la-seqIOALF.o libstaden_read_la-expFileIO.o libstaden_read_la-seqIOPlain.o libstaden_read_la-misc_scf.o libstaden_read_la-read_scf.o libstaden_read_la-write_scf.o libstaden_read_la-sff.o libstaden_read_la-srf.o libstaden_read_la-array.o libstaden_read_la-compress.o libstaden_read_la-error.o libstaden_read_la-files.o libstaden_read_la-find.o libstaden_read_la-mach-io.o libstaden_read_la-open_trace_file.o libstaden_read_la-read_alloc.o libstaden_read_la-strings.o libstaden_read_la-traceType.o libstaden_read_la-xalloc.o libstaden_read_la-vlen.o libstaden_read_la-hash_table.o libstaden_read_la-jenkins_lookup3.o libstaden_read_la-mFILE.o libstaden_read_la-pooled_alloc.o libstaden_read_la-bam.o libstaden_read_la-sam_header.o libstaden_read_la-rANS_static.o libstaden_read_la-cram_codecs.o libstaden_read_la-cram_encode.o libstaden_read_la-cram_decode.o libstaden_read_la-cram_stats.o libstaden_read_la-cram_io.o libstaden_read_la-cram_index.o libstaden_read_la-zfio.o libstaden_read_la-dstring.o libstaden_read_la-string_alloc.o libstaden_read_la-md5.o libstaden_read_la-crc32.o libstaden_read_la-scram.o libstaden_read_la-thread_pool.o libstaden_read_la-binning.o libstaden_read_la-cram_bambam.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libstaden-read.a libtool: link: ( cd ".libs" && rm -f "libstaden-read.la" && ln -s "../libstaden-read.la" "libstaden-read.la" ) make[3]: Leaving directory '/«PKGBUILDDIR»/io_lib' Making all in progs make[3]: Entering directory '/«PKGBUILDDIR»/progs' gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o convert_trace.o convert_trace.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie 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srf_extract_linear srf_extract_linear.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_extract_linear srf_extract_linear.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_extract_hash.o srf_extract_hash.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o srf_extract_hash srf_extract_hash.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_extract_hash srf_extract_hash.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o srf2fastq.o srf2fastq.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o srf2fastq srf2fastq.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf2fastq srf2fastq.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o srf2fasta.o srf2fasta.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o srf2fasta srf2fasta.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf2fasta srf2fasta.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_filter.o srf_filter.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o srf_filter srf_filter.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_filter srf_filter.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_info.o srf_info.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o srf_info srf_info.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_info srf_info.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o srf_list.o srf_list.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o srf_list srf_list.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/srf_list srf_list.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_exp.o hash_exp.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o hash_exp hash_exp.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/hash_exp hash_exp.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_dump.o cram_dump.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o cram_dump cram_dump.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_dump cram_dump.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_index.o cram_index.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o cram_index cram_index.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_index cram_index.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o scramble.o scramble.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o scramble scramble.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scramble scramble.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_merge.o scram_merge.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o scram_merge scram_merge.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_merge scram_merge.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_pileup.o scram_pileup.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_pileup scram_pileup.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_flagstat.o scram_flagstat.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o scram_flagstat scram_flagstat.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_flagstat scram_flagstat.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o scram_test.o scram_test.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o scram_test scram_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/scram_test scram_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_size.o cram_size.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o cram_size cram_size.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_size cram_size.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/«PKGBUILDDIR»/progs' Making all in tests make[3]: Entering directory '/«PKGBUILDDIR»/tests' gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o cram_io_test.o cram_io_test.c /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o cram_io_test cram_io_test.o ../io_lib/libstaden-read.la -lm -lpthread libtool: link: gcc -Wall -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cram_io_test cram_io_test.o ../io_lib/.libs/libstaden-read.so -lm -lpthread -pthread make[3]: Leaving directory '/«PKGBUILDDIR»/tests' make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test make -j1 check VERBOSE=1 make[1]: Entering directory '/«PKGBUILDDIR»' Making check in io_lib make[2]: Entering directory '/«PKGBUILDDIR»/io_lib' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/io_lib' Making check in progs make[2]: Entering directory '/«PKGBUILDDIR»/progs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/progs' Making check in tests make[2]: Entering directory '/«PKGBUILDDIR»/tests' make check-TESTS make[3]: Entering directory '/«PKGBUILDDIR»/tests' make[4]: Entering directory '/«PKGBUILDDIR»/tests' PASS: srf2fasta.test PASS: srf2fastq.test PASS: srf_info.test PASS: srf_filter.test PASS: srf_index.test PASS: scram.test PASS: scram_mt.test PASS: scram_v3.test PASS: cram_io.test PASS: java.test ============================================================================ Testsuite summary for io_lib 1.14.8 ============================================================================ # TOTAL: 10 # PASS: 10 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/«PKGBUILDDIR»/tests' make[3]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' Making install in io_lib make[2]: Entering directory '/«PKGBUILDDIR»/io_lib' make[3]: Entering directory '/«PKGBUILDDIR»/io_lib' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libstaden-read.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libstaden-read.so.11.0.6 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.11.0.6 libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libstaden-read.so.11.0.6 libstaden-read.so.11 || { rm -f libstaden-read.so.11 && ln -s libstaden-read.so.11.0.6 libstaden-read.so.11; }; }) libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libstaden-read.so.11.0.6 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.11.0.6 libstaden-read.so; }; }) libtool: install: /usr/bin/install -c .libs/libstaden-read.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.la libtool: install: /usr/bin/install -c .libs/libstaden-read.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/io_lib' make[2]: Leaving directory '/«PKGBUILDDIR»/io_lib' Making install in progs make[2]: Entering directory '/«PKGBUILDDIR»/progs' make[3]: Entering directory '/«PKGBUILDDIR»/progs' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat scram_test cram_size '/«PKGBUILDDIR»/debian/tmp/usr/bin' libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/convert_trace /«PKGBUILDDIR»/debian/tmp/usr/bin/convert_trace libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/makeSCF /«PKGBUILDDIR»/debian/tmp/usr/bin/makeSCF libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_seq /«PKGBUILDDIR»/debian/tmp/usr/bin/extract_seq libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_qual /«PKGBUILDDIR»/debian/tmp/usr/bin/extract_qual libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/extract_fastq /«PKGBUILDDIR»/debian/tmp/usr/bin/extract_fastq libtool: install: /usr/bin/install -c index_tar /«PKGBUILDDIR»/debian/tmp/usr/bin/index_tar libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_dump /«PKGBUILDDIR»/debian/tmp/usr/bin/scf_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_info /«PKGBUILDDIR»/debian/tmp/usr/bin/scf_info libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scf_update /«PKGBUILDDIR»/debian/tmp/usr/bin/scf_update libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/get_comment /«PKGBUILDDIR»/debian/tmp/usr/bin/get_comment libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_tar /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_tar libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_extract /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_extract libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_list /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_list libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/trace_dump /«PKGBUILDDIR»/debian/tmp/usr/bin/trace_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_sff /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_sff libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/append_sff /«PKGBUILDDIR»/debian/tmp/usr/bin/append_sff libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/ztr_dump /«PKGBUILDDIR»/debian/tmp/usr/bin/ztr_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_dump_all /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_dump_all libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_index_hash /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_index_hash libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_extract_linear /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_extract_linear libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_extract_hash /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_extract_hash libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf2fastq /«PKGBUILDDIR»/debian/tmp/usr/bin/srf2fastq libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf2fasta /«PKGBUILDDIR»/debian/tmp/usr/bin/srf2fasta libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_filter /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_filter libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_info /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_info libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/srf_list /«PKGBUILDDIR»/debian/tmp/usr/bin/srf_list libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/hash_exp /«PKGBUILDDIR»/debian/tmp/usr/bin/hash_exp libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_dump /«PKGBUILDDIR»/debian/tmp/usr/bin/cram_dump libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_index /«PKGBUILDDIR»/debian/tmp/usr/bin/cram_index libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scramble /«PKGBUILDDIR»/debian/tmp/usr/bin/scramble libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_merge /«PKGBUILDDIR»/debian/tmp/usr/bin/scram_merge libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_pileup /«PKGBUILDDIR»/debian/tmp/usr/bin/scram_pileup libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_flagstat /«PKGBUILDDIR»/debian/tmp/usr/bin/scram_flagstat libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/scram_test /«PKGBUILDDIR»/debian/tmp/usr/bin/scram_test libtool: warning: '../io_lib/libstaden-read.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/cram_size /«PKGBUILDDIR»/debian/tmp/usr/bin/cram_size make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/progs' make[2]: Leaving directory '/«PKGBUILDDIR»/progs' Making install in tests make[2]: Entering directory '/«PKGBUILDDIR»/tests' make[3]: Entering directory '/«PKGBUILDDIR»/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Entering directory '/«PKGBUILDDIR»' make[3]: Entering directory '/«PKGBUILDDIR»' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin' /usr/bin/install -c io_lib-config '/«PKGBUILDDIR»/debian/tmp/usr/bin' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 man/man1/srf_index_hash.1 man/man1/srf_info.1 man/man1/srf_list.1 man/man1/srf2fasta.1 man/man1/srf2fastq.1 man/man1/scramble.1 '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man1' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man3' /usr/bin/install -c -m 644 man/man3/read_scf_header.3 man/man3/read_allocate.3 man/man3/ExperimentFile.3 man/man3/write_reading.3 man/man3/write_scf.3 man/man3/read_deallocate.3 man/man3/fwrite_reading.3 man/man3/read2scf.3 man/man3/scf2read.3 man/man3/fwrite_scf.3 man/man3/write_scf_header.3 man/man3/read_reading.3 man/man3/read_scf.3 man/man3/exp2read.3 man/man3/fread_reading.3 man/man3/read2exp.3 man/man3/fread_scf.3 '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man3' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man4' /usr/bin/install -c -m 644 man/man4/Read.4 '/«PKGBUILDDIR»/debian/tmp/usr/share/man/man4' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/Read.h io_lib/scf_extras.h io_lib/translate.h io_lib/abi.h io_lib/fpoint.h io_lib/seqIOABI.h io_lib/alf.h io_lib/expFileIO.h io_lib/plain.h io_lib/scf.h io_lib/sff.h io_lib/array.h io_lib/compress.h io_lib/error.h io_lib/mach-io.h io_lib/misc.h io_lib/open_trace_file.h io_lib/tar_format.h io_lib/traceType.h io_lib/xalloc.h io_lib/mFILE.h io_lib/stdio_hack.h io_lib/vlen.h io_lib/hash_table.h io_lib/jenkins_lookup3.h io_lib/os.h io_lib/compression.h io_lib/ztr.h io_lib/deflate_interlaced.h io_lib/srf.h io_lib/pooled_alloc.h io_lib/cram.h io_lib/cram_structs.h io_lib/cram_io.h io_lib/cram_encode.h io_lib/cram_decode.h io_lib/cram_codecs.h io_lib/cram_index.h io_lib/cram_stats.h io_lib/zfio.h '/«PKGBUILDDIR»/debian/tmp/usr/include/io_lib' /usr/bin/install -c -m 644 io_lib/scram.h io_lib/bam.h io_lib/sam_header.h io_lib/dstring.h io_lib/string_alloc.h io_lib_config.h io_lib/md5.h io_lib/thread_pool.h io_lib/binning.h '/«PKGBUILDDIR»/debian/tmp/usr/include/io_lib' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_install-arch make[1]: Entering directory '/«PKGBUILDDIR»' dh_install -a mkdir -p /«PKGBUILDDIR»/debian/libstaden-read-dev/usr/bin mv /«PKGBUILDDIR»/debian/staden-io-lib-utils/usr/bin/io_lib-config /«PKGBUILDDIR»/debian/libstaden-read-dev/usr/bin # # Call d-shlibmove to comply with library packaging guide d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev "debian/tmp/usr/include" usr \ debian/tmp/usr/lib/*/libstaden-read.so Library package automatic movement utility --> libcurl4-gnutls-dev package exists. --> zlib1g-dev package exists. set -e install -d -m 755 debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libstaden-read11/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.a debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so debian/libstaden-read-dev/usr/lib/x86_64-linux-gnu mv /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.11 debian/libstaden-read11/usr/lib/x86_64-linux-gnu mv /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libstaden-read.so.11.0.6 debian/libstaden-read11/usr/lib/x86_64-linux-gnu PKGDEV=libstaden-read-dev PKGSHL=libstaden-read11 install -d -m 755 debian/libstaden-read-dev/usr mv debian/tmp/usr/include debian/libstaden-read-dev/usr # # make sure io_lib-config --libs will not return -pie (see #825461) find debian/*/usr/bin -name io_lib-config -exec sed -i -e 's/ *-fPIE//' -e 's/ *-pie//' \{\} \; #dh_installman # manpages need some post editing but in case it could be automated, this code would help # mkdir -p # help2man --no-discard-stderr --no-info --help-option='""' \ # --name='filter SRF files for various purposes' \ # --version-string="" \ # /«PKGBUILDDIR»/debian//usr/bin/srf_filter > /srf_filter.1 make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_install-indep make[1]: Entering directory '/«PKGBUILDDIR»' dh_install -i mkdir -p debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test for tst in `ls tests/*.test` ; do \ sed -e 's#\.\./$top_builddir/progs/#/usr/bin/#' -e 's#$top_builddir/progs/#/usr/bin/#' ${tst} > debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/`basename ${tst}` ; \ done # remove autogenerated big data files rm -f debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/data/ce\#*sorted.sam make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-indep make[1]: Entering directory '/«PKGBUILDDIR»' dh_fixperms chmod +x debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/*.test debian/staden-io-lib-examples/usr/share/doc/staden-io-lib/test/*.pl make[1]: Leaving directory '/«PKGBUILDDIR»' dh_fixperms -Nstaden-io-lib-examples dh_strip dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: staden-io-lib-utils libstaden-read-dev libstaden-read11 dh_strip debug symbol extraction: packages to act on: staden-io-lib-utils libstaden-read-dev libstaden-read11 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 libstaden-read-dev has no unstripped objects, ignoring find: ‘/«PKGBUILDDIR»/debian/libstaden-read-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /«PKGBUILDDIR»/debian/libstaden-read-dev-dbgsym and no dbgdepends, ignoring Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libstaden-read-dev: unused substitution variable ${devlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: Depends field of package staden-io-lib-examples: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: staden-io-lib-utils libstaden-read-dev libstaden-read11 dh_gencontrol debug symbol wrapper: packages to act on: staden-io-lib-utils libstaden-read-dev libstaden-read11 dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package staden-io-lib-utils (pkgdir debian/staden-io-lib-utils, ddeb package dir debian/staden-io-lib-utils-dbgsym) dh_gencontrol debug symbol wrapper: building staden-io-lib-utils-dbgsym_1.14.8-2_amd64.ddeb dpkg-deb: building package 'staden-io-lib-utils-dbgsym' in '../staden-io-lib-utils-dbgsym_1.14.8-2_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile staden-io-lib-utils-dbgsym_1.14.8-2_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: no debian/libstaden-read-dev-dbgsym, skipping package libstaden-read-dev dh_gencontrol debug symbol wrapper: processing package libstaden-read11 (pkgdir debian/libstaden-read11, ddeb package dir debian/libstaden-read11-dbgsym) dh_gencontrol debug symbol wrapper: building libstaden-read11-dbgsym_1.14.8-2_amd64.ddeb dpkg-deb: building package 'libstaden-read11-dbgsym' in '../libstaden-read11-dbgsym_1.14.8-2_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile libstaden-read11-dbgsym_1.14.8-2_amd64.ddeb libs extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums dh_builddeb INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 pkgstriptranslations: processing staden-io-lib-utils (in debian/staden-io-lib-utils); do_strip: , oemstrip: pkgstriptranslations: processing libstaden-read-dev (in debian/libstaden-read-dev); do_strip: , oemstrip: pkgstriptranslations: processing staden-io-lib-examples (in debian/staden-io-lib-examples); do_strip: , oemstrip: pkgstriptranslations: processing libstaden-read11 (in debian/libstaden-read11); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/staden-io-lib-utils/DEBIAN/control, package staden-io-lib-utils, directory debian/staden-io-lib-utils pkgstripfiles: processing control file: debian/libstaden-read-dev/DEBIAN/control, package libstaden-read-dev, directory debian/libstaden-read-dev INFO: pkgstripfiles: waiting for lock (libstaden-read-dev) ... .. removing usr/share/doc/staden-io-lib-utils/CHANGES.gz Searching for duplicated docs in dependency libstaden-read11... symlinking changelog.Debian.gz in staden-io-lib-utils to file in libstaden-read11 pkgstripfiles: processing control file: debian/staden-io-lib-examples/DEBIAN/control, package staden-io-lib-examples, directory debian/staden-io-lib-examples pkgstripfiles: Running PNG optimization (using 4 cpus) for package staden-io-lib-utils ... pkgstripfiles: No PNG files. pkgstripfiles: processing control file: debian/libstaden-read11/DEBIAN/control, package libstaden-read11, directory debian/libstaden-read11 INFO: pkgstripfiles: waiting for lock (staden-io-lib-examples) ... dpkg-deb: building package 'staden-io-lib-utils' in '../staden-io-lib-utils_1.14.8-2_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libstaden-read11) ... Searching for duplicated docs in dependency libstaden-read11... symlinking changelog.Debian.gz in libstaden-read-dev to file in libstaden-read11 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libstaden-read-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libstaden-read-dev' in '../libstaden-read-dev_1.14.8-2_amd64.deb'. INFO: pkgstripfiles: waiting for lock (staden-io-lib-examples) ... pkgstripfiles: Truncating usr/share/doc/libstaden-read11/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libstaden-read11 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libstaden-read11' in '../libstaden-read11_1.14.8-2_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/staden-io-lib-examples/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package staden-io-lib-examples ... pkgstripfiles: No PNG files. dpkg-deb: building package 'staden-io-lib-examples' in '../staden-io-lib-examples_1.14.8-2_all.deb'. dpkg-genchanges --build=any,all -mLaunchpad Build Daemon >../staden-io-lib_1.14.8-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build staden-io-lib-1.14.8 dpkg-buildpackage: info: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160527-2322 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ staden-io-lib_1.14.8-2_amd64.changes: ───────────────────────────────────── Format: 1.8 Date: Fri, 27 May 2016 16:07:11 +0200 Source: staden-io-lib Binary: staden-io-lib-utils libstaden-read-dev libstaden-read11 staden-io-lib-examples Architecture: amd64 all Version: 1.14.8-2 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libstaden-read-dev - development files for libstaden-read libstaden-read11 - Staden library for reading and writing DNA sequencing results staden-io-lib-examples - programs for maniuplating DNA sequencing files (usage examples) staden-io-lib-utils - programs for maniuplating DNA sequencing files Changes: staden-io-lib (1.14.8-2) unstable; urgency=medium . * make sure io_lib-config --libs will not return -pie (see #825461) Checksums-Sha1: 59fad2fa35ce911a5a2bf2adaaa741bac6a99980 292004 libstaden-read-dev_1.14.8-2_amd64.deb 55b87d982e9c68f09f8059cd124a4f62d60d8eed 362434 libstaden-read11-dbgsym_1.14.8-2_amd64.ddeb e8e7b4829893431dd1a71665c03022a9ae335f12 212664 libstaden-read11_1.14.8-2_amd64.deb 4a4c0d9df281c1ecaa84b35510d73e0a44be83e1 1211740 staden-io-lib-examples_1.14.8-2_all.deb 6751f19d1389e56eb6f9337eacfa573eb667ca89 203920 staden-io-lib-utils-dbgsym_1.14.8-2_amd64.ddeb 40d66f355921b35207992e292b74aaea7c9e5621 126258 staden-io-lib-utils_1.14.8-2_amd64.deb Checksums-Sha256: 78ee4bffd029e7bfa5148550828d66ad3ac07e6ae70355a9af14d2a8cda1d790 292004 libstaden-read-dev_1.14.8-2_amd64.deb 389fed2800adebb7210f56f925b8e1594ef06f2a8f94be6984759c46d52692b1 362434 libstaden-read11-dbgsym_1.14.8-2_amd64.ddeb db36be9861c14c26e4b5b5e1a8cf7abbb47bb2c34ea958c8a031f6a84da602ad 212664 libstaden-read11_1.14.8-2_amd64.deb 9368700d2b4d941a54f2ff28f8079c84f17fee21df78f88dfad5ee5f23d1dc44 1211740 staden-io-lib-examples_1.14.8-2_all.deb 41cccd577f2c520691d5bf65e1c948b912dadbc51dea47588d538dea18310fe4 203920 staden-io-lib-utils-dbgsym_1.14.8-2_amd64.ddeb ffc5d896cdd804c6049b721daf7713742219fd2898cac49ae5674abb3bef790b 126258 staden-io-lib-utils_1.14.8-2_amd64.deb Files: b272b45993393e23a147c8bd09ea0513 292004 libdevel optional libstaden-read-dev_1.14.8-2_amd64.deb a13e90d952120686f759e406797f12d8 362434 libs extra libstaden-read11-dbgsym_1.14.8-2_amd64.ddeb 0bc0b8bfdf4326b118f1a574de76e709 212664 libs optional libstaden-read11_1.14.8-2_amd64.deb cace3b7f6508a83edf58be4b8563f8d6 1211740 science optional staden-io-lib-examples_1.14.8-2_all.deb f5b3f739dd6844c5ae4b9a6c961239a4 203920 science extra staden-io-lib-utils-dbgsym_1.14.8-2_amd64.ddeb f5ab0430932bc65c972777df1fe0ff97 126258 science optional staden-io-lib-utils_1.14.8-2_amd64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ libstaden-read-dev_1.14.8-2_amd64.deb ───────────────────────────────────── new debian package, version 2.0. size 292004 bytes: control archive=2364 bytes. 816 bytes, 19 lines control 3819 bytes, 59 lines md5sums Package: libstaden-read-dev Source: staden-io-lib Version: 1.14.8-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1219 Depends: libstaden-read11 (= 1.14.8-2) Section: libdevel Priority: optional Homepage: http://staden.sourceforge.net/ Description: development files for libstaden-read This package contains the header and development files needed to build programs and packages using the Staden io_lib. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. 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Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 507 Depends: libc6 (>= 2.15), libcurl3-gnutls (>= 7.16.2), zlib1g (>= 1:1.2.0.2) Section: libs Priority: optional Multi-Arch: same Homepage: http://staden.sourceforge.net/ Description: Staden library for reading and writing DNA sequencing results This package contains the Staden io_lib, that is renamed in Debian and Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. . The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. drwxr-xr-x root/root 0 2016-05-27 23:22 ./ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/lib/ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2016-05-27 23:22 ./usr/lib/x86_64-linux-gnu/libstaden-read.so.11 -> libstaden-read.so.11.0.6 -rw-r--r-- root/root 496160 2016-05-27 23:22 ./usr/lib/x86_64-linux-gnu/libstaden-read.so.11.0.6 drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/doc/libstaden-read11/ -rw-r--r-- root/root 1014 2016-05-27 23:22 ./usr/share/doc/libstaden-read11/changelog.Debian.gz -rw-r--r-- root/root 7255 2016-05-27 14:07 ./usr/share/doc/libstaden-read11/copyright staden-io-lib-examples_1.14.8-2_all.deb ─────────────────────────────────────── new debian package, version 2.0. size 1211740 bytes: control archive=3440 bytes. 1057 bytes, 23 lines control 8048 bytes, 91 lines md5sums Package: staden-io-lib-examples Source: staden-io-lib Version: 1.14.8-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1321 Recommends: staden-io-lib-utils Section: science Priority: optional Homepage: http://staden.sourceforge.net/ Description: programs for maniuplating DNA sequencing files (usage examples) The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. . 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debian package, version 2.0. size 126258 bytes: control archive=2186 bytes. 1008 bytes, 22 lines control 2971 bytes, 50 lines md5sums Package: staden-io-lib-utils Source: staden-io-lib Version: 1.14.8-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 538 Depends: libc6 (>= 2.14), libstaden-read11 Suggests: staden-io-lib-examples Section: science Priority: optional Homepage: http://staden.sourceforge.net/ Description: programs for maniuplating DNA sequencing files The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. drwxr-xr-x root/root 0 2016-05-27 23:22 ./ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/bin/ -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/append_sff -rwxr-xr-x root/root 18600 2016-05-27 23:22 ./usr/bin/convert_trace -rwxr-xr-x root/root 22520 2016-05-27 23:22 ./usr/bin/cram_dump -rwxr-xr-x root/root 6136 2016-05-27 23:22 ./usr/bin/cram_index -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/cram_size -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/extract_fastq -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/extract_qual -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/extract_seq -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/get_comment -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/hash_exp -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/hash_extract -rwxr-xr-x root/root 6136 2016-05-27 23:22 ./usr/bin/hash_list -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/hash_sff -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/hash_tar -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/index_tar -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/makeSCF -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/scf_dump -rwxr-xr-x root/root 6136 2016-05-27 23:22 ./usr/bin/scf_info -rwxr-xr-x root/root 6136 2016-05-27 23:22 ./usr/bin/scf_update -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/scram_flagstat -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/scram_merge -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/scram_pileup -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/scram_test -rwxr-xr-x root/root 18424 2016-05-27 23:22 ./usr/bin/scramble -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/srf2fasta -rwxr-xr-x root/root 18424 2016-05-27 23:22 ./usr/bin/srf2fastq -rwxr-xr-x root/root 26616 2016-05-27 23:22 ./usr/bin/srf_dump_all -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/srf_extract_hash -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/srf_extract_linear -rwxr-xr-x root/root 26616 2016-05-27 23:22 ./usr/bin/srf_filter -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/srf_index_hash -rwxr-xr-x root/root 22520 2016-05-27 23:22 ./usr/bin/srf_info -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/srf_list -rwxr-xr-x root/root 10232 2016-05-27 23:22 ./usr/bin/trace_dump -rwxr-xr-x root/root 14328 2016-05-27 23:22 ./usr/bin/ztr_dump drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/doc-base/ -rw-r--r-- root/root 304 2013-09-12 08:58 ./usr/share/doc-base/staden-io-lib-hash-file-format -rw-r--r-- root/root 349 2013-09-12 08:58 ./usr/share/doc-base/staden-io-lib-ztr-format drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/doc/staden-io-lib-utils/ -rw-r--r-- root/root 3266 2014-06-30 06:12 ./usr/share/doc/staden-io-lib-utils/Hash_File_Format -rw-r--r-- root/root 3045 2016-04-22 13:49 ./usr/share/doc/staden-io-lib-utils/README.gz -rw-r--r-- root/root 20980 2014-06-30 06:12 ./usr/share/doc/staden-io-lib-utils/ZTR_format.gz lrwxrwxrwx root/root 0 2016-05-27 23:22 ./usr/share/doc/staden-io-lib-utils/changelog.Debian.gz -> ../libstaden-read11/changelog.Debian.gz -rw-r--r-- root/root 7255 2016-05-27 14:07 ./usr/share/doc/staden-io-lib-utils/copyright drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/man/ drwxr-xr-x root/root 0 2016-05-27 23:22 ./usr/share/man/man1/ -rw-r--r-- root/root 380 2016-05-27 23:22 ./usr/share/man/man1/append_sff.1.gz -rw-r--r-- root/root 2007 2016-05-27 23:22 ./usr/share/man/man1/scramble.1.gz -rw-r--r-- root/root 358 2016-05-27 23:22 ./usr/share/man/man1/srf2fasta.1.gz -rw-r--r-- root/root 1321 2016-05-27 23:22 ./usr/share/man/man1/srf2fastq.1.gz -rw-r--r-- root/root 836 2016-05-27 23:22 ./usr/share/man/man1/srf_dump_all.1.gz -rw-r--r-- root/root 859 2016-05-27 23:22 ./usr/share/man/man1/srf_filter.1.gz -rw-r--r-- root/root 572 2016-05-27 23:22 ./usr/share/man/man1/srf_index_hash.1.gz -rw-r--r-- root/root 748 2016-05-27 23:22 ./usr/share/man/man1/srf_info.1.gz -rw-r--r-- root/root 804 2016-05-27 23:22 ./usr/share/man/man1/srf_list.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 186960 Build-Time: 100 Distribution: yakkety-proposed Host Architecture: amd64 Install-Time: 12 Job: staden-io-lib_1.14.8-2.dsc Machine Architecture: amd64 Package: staden-io-lib Package-Time: 114 Source-Version: 1.14.8-2 Space: 186960 Status: successful Version: 1.14.8-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160527-2322 Build needed 00:01:54, 186960k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9821313'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9821313/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9821313'] Unmounting chroot for build PACKAGEBUILD-9821313... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9821313'] Removing build PACKAGEBUILD-9821313