https://launchpad.net/ubuntu/+source/toil/6.1.0-4/+build/28289389 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-109 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 12:29:36 UTC 2024 x86_64 Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.12 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 8 Jun 11:58:48 ntpdate[1847]: adjust time server 10.131.248.1 offset -0.008976 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28289389 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-28289389 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28289389 Starting target for build PACKAGEBUILD-28289389 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28289389 'deb http://ftpmaster.internal/ubuntu oracular main universe' 'deb http://ftpmaster.internal/ubuntu oracular-security main universe' 'deb http://ftpmaster.internal/ubuntu oracular-updates main universe' 'deb http://ftpmaster.internal/ubuntu oracular-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28289389 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28289389 Updating target for build PACKAGEBUILD-28289389 Get:1 http://ftpmaster.internal/ubuntu oracular InRelease [110 kB] Get:2 http://ftpmaster.internal/ubuntu oracular-security InRelease [110 kB] Get:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease [110 kB] Get:4 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 Packages [1411 kB] Get:6 http://ftpmaster.internal/ubuntu oracular/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu oracular/universe amd64 Packages [15.7 MB] Get:8 http://ftpmaster.internal/ubuntu oracular/universe Translation-en [6069 kB] Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [65.1 kB] Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/main Translation-en [23.7 kB] Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [314 kB] Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe Translation-en [120 kB] Fetched 24.6 MB in 3s (9438 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 systemd-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-x86-64-linux-gnu gcc-14-base gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 177 upgraded, 23 newly installed, 14 to remove and 0 not upgraded. Need to get 120 MB of archives. After this operation, 61.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 libtirpc-common all 1.3.4+ds-1.3 [8106 B] Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libnsl-dev amd64 1.3.0-3build3 [70.5 kB] Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libnsl2 amd64 1.3.0-3build3 [41.4 kB] Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.5 kB] Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2 [142 kB] Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2 [347 kB] Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2 [81.7 kB] Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2 [33.5 kB] Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libargon2-1 amd64 0~20190702+dfsg-4build1 [20.8 kB] Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libblkid1 amd64 2.39.3-9ubuntu6 [123 kB] Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu2 [227 kB] Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libselinux1 amd64 3.5-2ubuntu2 [79.6 kB] Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libcap2 amd64 1:2.66-5ubuntu2 [30.0 kB] Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libudev1 amd64 256~rc3-5ubuntu1 [192 kB] Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu4 [139 kB] Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libjson-c5 amd64 0.17-1build1 [35.3 kB] Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libuuid1 amd64 2.39.3-9ubuntu6 [35.2 kB] Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu5 [266 kB] Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libacl1 amd64 2.3.2-2 [16.8 kB] Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libapparmor1 amd64 4.0.1-0ubuntu1 [49.9 kB] Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libcap-ng0 amd64 0.8.5-1 [15.2 kB] Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libaudit1 amd64 1:3.1.2-2.1build1 [46.9 kB] Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libcrypt-dev amd64 1:4.4.36-4build1 [112 kB] Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libcrypt1 amd64 1:4.4.36-4build1 [82.3 kB] Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libmount1 amd64 2.39.3-9ubuntu6 [134 kB] Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 perl-modules-5.38 all 5.38.2-5 [3110 kB] Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [734 kB] Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdbm6t64 amd64 1.23-5.1build1 [34.4 kB] Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libgdbm-compat4t64 amd64 1.23-5.1build1 [6710 B] Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libperl5.38t64 amd64 5.38.2-5 [4872 kB] Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 perl amd64 5.38.2-5 [231 kB] Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 perl-base amd64 5.38.2-5 [1823 kB] Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.6 kB] Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libtext-iconv-perl amd64 1.7-8build3 [13.5 kB] Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 libtext-charwidth-perl amd64 0.04-11build3 [9358 B] Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnss-nisplus amd64 1.3-5build1 [22.4 kB] Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnss-nis amd64 3.1-0ubuntu7 [26.5 kB] Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libc-dev-bin amd64 2.39-0ubuntu8.1 [20.4 kB] Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu7 [67.4 kB] Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 libc6-dev amd64 2.39-0ubuntu8.1 [2124 kB] Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 libc6 amd64 2.39-0ubuntu8.1 [3265 kB] Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libc-bin amd64 2.39-0ubuntu8.1 [682 kB] Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 openssl amd64 3.0.13-0ubuntu4 [1003 kB] Get:46 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libsystemd-shared amd64 256~rc3-5ubuntu1 [2188 kB] Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [127 kB] Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libkmod2 amd64 31+20240202-2ubuntu7 [51.7 kB] Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libssl3t64 amd64 3.0.13-0ubuntu4 [1940 kB] Get:50 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 systemd-sysv amd64 256~rc3-5ubuntu1 [11.9 kB] Get:51 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 systemd-dev all 256~rc3-5ubuntu1 [110 kB] Get:52 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 systemd amd64 256~rc3-5ubuntu1 [3648 kB] Get:53 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libsystemd0 amd64 256~rc3-5ubuntu1 [440 kB] Get:54 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libapt-pkg6.0t64 amd64 2.9.4 [1018 kB] Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libnettle8t64 amd64 3.9.1-2.2build1 [182 kB] Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libhogweed6t64 amd64 3.9.1-2.2build1 [199 kB] Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu2 [299 kB] Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 libunistring5 amd64 1.2-1 [539 kB] Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 libgnutls30t64 amd64 3.8.5-4ubuntu1 [1008 kB] Get:60 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 apt amd64 2.9.4 [1403 kB] Get:61 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 apt-utils amd64 2.9.4 [223 kB] Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 libpam-modules-bin amd64 1.5.3-7ubuntu1 [51.9 kB] Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 libpam-modules amd64 1.5.3-7ubuntu1 [284 kB] Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 bzip2 amd64 1.0.8-5.1 [34.5 kB] Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [34.3 kB] Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-14-base amd64 14.1.0-1ubuntu1 [48.4 kB] Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-s1 amd64 14.1.0-1ubuntu1 [78.2 kB] Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 libgpg-error-l10n all 1.49-2 [8228 B] Get:69 http://ftpmaster.internal/ubuntu oracular/main amd64 libgpg-error0 amd64 1.49-2 [70.9 kB] Get:70 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcrypt20 amd64 1.10.3-3 [532 kB] Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 liblz4-1 amd64 1.9.4-2 [62.9 kB] Get:72 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++6 amd64 14.1.0-1ubuntu1 [794 kB] Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 libxxhash0 amd64 0.8.2-2build1 [24.1 kB] Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 libzstd1 amd64 1.5.5+dfsg2-2build1 [299 kB] Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu2 [62.8 kB] Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2ubuntu6 [253 kB] Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 libffi8 amd64 3.4.6-1build1 [24.7 kB] Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 libidn2-0 amd64 2.3.7-2build1 [66.2 kB] Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 libtasn1-6 amd64 4.19.0-3build1 [43.9 kB] Get:80 http://ftpmaster.internal/ubuntu oracular/main amd64 libdebconfclient0 amd64 0.271ubuntu3 [11.4 kB] Get:81 http://ftpmaster.internal/ubuntu oracular/main amd64 base-passwd amd64 3.6.3build1 [51.1 kB] Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 libassuan0 amd64 2.5.6-1build1 [37.3 kB] Get:83 http://ftpmaster.internal/ubuntu oracular/main amd64 libsqlite3-0 amd64 3.46.0-1 [707 kB] Get:84 http://ftpmaster.internal/ubuntu oracular/main amd64 gpg amd64 2.4.4-2ubuntu17 [565 kB] Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 libreadline8t64 amd64 8.2-4build1 [153 kB] Get:86 http://ftpmaster.internal/ubuntu oracular/main amd64 readline-common all 8.2-4build1 [56.5 kB] Get:87 http://ftpmaster.internal/ubuntu oracular/main amd64 libncursesw6 amd64 6.5-2 [148 kB] Get:88 http://ftpmaster.internal/ubuntu oracular/main amd64 libtinfo6 amd64 6.5-2 [108 kB] Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 gpg-agent amd64 2.4.4-2ubuntu17 [227 kB] Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 gpgconf amd64 2.4.4-2ubuntu17 [103 kB] Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 pinentry-curses amd64 1.2.1-3ubuntu5 [35.2 kB] Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:93 http://ftpmaster.internal/ubuntu oracular/main amd64 libnpth0t64 amd64 1.6-3.1build1 [8378 B] Get:94 http://ftpmaster.internal/ubuntu oracular/main amd64 gpgv amd64 2.4.4-2ubuntu17 [157 kB] Get:95 http://ftpmaster.internal/ubuntu oracular/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libseccomp2 amd64 2.5.5-1ubuntu3 [50.3 kB] Get:97 http://ftpmaster.internal/ubuntu oracular/main amd64 debconf-i18n all 1.5.86ubuntu1 [205 kB] Get:98 http://ftpmaster.internal/ubuntu oracular/main amd64 debconf all 1.5.86ubuntu1 [124 kB] Get:99 http://ftpmaster.internal/ubuntu oracular/main amd64 libpam0g amd64 1.5.3-7ubuntu1 [67.8 kB] Get:100 http://ftpmaster.internal/ubuntu oracular/main amd64 libfdisk1 amd64 2.39.3-9ubuntu6 [146 kB] Get:101 http://ftpmaster.internal/ubuntu oracular/main amd64 mount amd64 2.39.3-9ubuntu6 [118 kB] Get:102 http://ftpmaster.internal/ubuntu oracular/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu4 [22.8 kB] Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B] Get:104 http://ftpmaster.internal/ubuntu oracular/main amd64 linux-libc-dev amd64 6.8.0-31.31 [1598 kB] Get:105 http://ftpmaster.internal/ubuntu oracular/main amd64 base-files amd64 13.1ubuntu1 [73.8 kB] Get:106 http://ftpmaster.internal/ubuntu oracular/main amd64 debianutils amd64 5.18 [90.0 kB] Get:107 http://ftpmaster.internal/ubuntu oracular/main amd64 bash amd64 5.2.21-2.1ubuntu1 [794 kB] Get:108 http://ftpmaster.internal/ubuntu oracular/main amd64 bsdutils amd64 1:2.39.3-9ubuntu6 [95.0 kB] Get:109 http://ftpmaster.internal/ubuntu oracular/main amd64 coreutils amd64 9.4-3ubuntu6 [1412 kB] Get:110 http://ftpmaster.internal/ubuntu oracular/main amd64 tar amd64 1.35+dfsg-3build1 [253 kB] Get:111 http://ftpmaster.internal/ubuntu oracular/main amd64 dpkg amd64 1.22.6ubuntu10 [1283 kB] Get:112 http://ftpmaster.internal/ubuntu oracular/main amd64 dash amd64 0.5.12-6ubuntu5 [89.8 kB] Get:113 http://ftpmaster.internal/ubuntu oracular/main amd64 diffutils amd64 1:3.10-1build1 [177 kB] Get:114 http://ftpmaster.internal/ubuntu oracular/main amd64 findutils amd64 4.9.0-6 [298 kB] Get:115 http://ftpmaster.internal/ubuntu oracular/main amd64 grep amd64 3.11-4build1 [162 kB] Get:116 http://ftpmaster.internal/ubuntu oracular/main amd64 gzip amd64 1.12-1ubuntu3 [98.8 kB] Get:117 http://ftpmaster.internal/ubuntu oracular/main amd64 hostname amd64 3.23+nmu2ubuntu2 [11.1 kB] Get:118 http://ftpmaster.internal/ubuntu oracular/main amd64 login amd64 1:4.13+dfsg1-4ubuntu5 [202 kB] Get:119 http://ftpmaster.internal/ubuntu oracular/main amd64 ncurses-bin amd64 6.5-2 [189 kB] Get:120 http://ftpmaster.internal/ubuntu oracular/main amd64 sed amd64 4.9-2build1 [193 kB] Get:121 http://ftpmaster.internal/ubuntu oracular/main amd64 util-linux amd64 2.39.3-9ubuntu6 [1127 kB] Get:122 http://ftpmaster.internal/ubuntu oracular/main amd64 ncurses-base all 6.5-2 [25.8 kB] Get:123 http://ftpmaster.internal/ubuntu oracular/main amd64 sysvinit-utils amd64 3.08-6ubuntu3 [34.2 kB] Get:124 http://ftpmaster.internal/ubuntu oracular/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu4 [22.5 kB] Get:125 http://ftpmaster.internal/ubuntu oracular/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu4 [222 kB] Get:126 http://ftpmaster.internal/ubuntu oracular/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu4 [601 kB] Get:127 http://ftpmaster.internal/ubuntu oracular/main amd64 optipng amd64 0.7.8+ds-1build2 [110 kB] Get:128 http://ftpmaster.internal/ubuntu oracular/main amd64 libpng16-16t64 amd64 1.6.43-5build1 [187 kB] Get:129 http://ftpmaster.internal/ubuntu oracular/main amd64 init amd64 1.66ubuntu1 [6186 B] Get:130 http://ftpmaster.internal/ubuntu oracular/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu6 [64.8 kB] Get:131 http://ftpmaster.internal/ubuntu oracular/main amd64 uuid-runtime amd64 2.39.3-9ubuntu6 [33.1 kB] Get:132 http://ftpmaster.internal/ubuntu oracular/main amd64 libattr1 amd64 1:2.5.2-1build1 [11.3 kB] Get:133 http://ftpmaster.internal/ubuntu oracular/main amd64 libmd0 amd64 1.1.0-2build1 [27.0 kB] Get:134 http://ftpmaster.internal/ubuntu oracular/main amd64 libpam-runtime all 1.5.3-7ubuntu1 [40.8 kB] Get:135 http://ftpmaster.internal/ubuntu oracular/main amd64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:136 http://ftpmaster.internal/ubuntu oracular/main amd64 libsepol2 amd64 3.5-2build1 [303 kB] Get:137 http://ftpmaster.internal/ubuntu oracular/main amd64 libsemanage2 amd64 3.5-1build5 [93.2 kB] Get:138 http://ftpmaster.internal/ubuntu oracular/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu5 [845 kB] Get:139 http://ftpmaster.internal/ubuntu oracular/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu3 [59.1 kB] Get:140 http://ftpmaster.internal/ubuntu oracular/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu4 [17.0 kB] Get:141 http://ftpmaster.internal/ubuntu oracular/main amd64 mawk amd64 1.3.4.20240123-1build1 [127 kB] Get:142 http://ftpmaster.internal/ubuntu oracular/main amd64 procps amd64 2:4.0.4-4ubuntu3 [708 kB] Get:143 http://ftpmaster.internal/ubuntu oracular/main amd64 sensible-utils all 0.0.22 [22.5 kB] Get:144 http://ftpmaster.internal/ubuntu oracular/main amd64 ca-certificates all 20240203 [159 kB] Get:145 http://ftpmaster.internal/ubuntu oracular/main amd64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:146 http://ftpmaster.internal/ubuntu oracular/main amd64 tzdata all 2024a-4ubuntu1 [274 kB] Get:147 http://ftpmaster.internal/ubuntu oracular/main amd64 bash-completion all 1:2.14.0-1 [206 kB] Get:148 http://ftpmaster.internal/ubuntu oracular/main amd64 bsdextrautils amd64 2.39.3-9ubuntu6 [73.8 kB] Get:149 http://ftpmaster.internal/ubuntu oracular/main amd64 libgpm2 amd64 1.20.7-11 [14.1 kB] Get:150 http://ftpmaster.internal/ubuntu oracular/main amd64 libip4tc2 amd64 1.8.10-3ubuntu2 [23.3 kB] Get:151 http://ftpmaster.internal/ubuntu oracular/main amd64 libjansson4 amd64 2.14-2build2 [32.8 kB] Get:152 http://ftpmaster.internal/ubuntu oracular/main amd64 psmisc amd64 23.7-1build1 [179 kB] Get:153 http://ftpmaster.internal/ubuntu oracular/main amd64 xz-utils amd64 5.6.1+really5.4.5-1 [267 kB] Get:154 http://ftpmaster.internal/ubuntu oracular/main amd64 advancecomp amd64 2.5-1build1 [182 kB] Get:155 http://ftpmaster.internal/ubuntu oracular/main amd64 libgprofng0 amd64 2.42-4ubuntu2 [851 kB] Get:156 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf0 amd64 2.42-4ubuntu2 [94.5 kB] Get:157 http://ftpmaster.internal/ubuntu oracular/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu2 [97.1 kB] Get:158 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu2 [2469 kB] Get:159 http://ftpmaster.internal/ubuntu oracular/main amd64 libbinutils amd64 2.42-4ubuntu2 [572 kB] Get:160 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils amd64 2.42-4ubuntu2 [18.0 kB] Get:161 http://ftpmaster.internal/ubuntu oracular/main amd64 binutils-common amd64 2.42-4ubuntu2 [239 kB] Get:162 http://ftpmaster.internal/ubuntu oracular/main amd64 libsframe1 amd64 2.42-4ubuntu2 [14.8 kB] Get:163 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB] Get:164 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 g++-13 amd64 13.2.0-25ubuntu1 [15.6 kB] Get:165 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libstdc++-13-dev amd64 13.2.0-25ubuntu1 [2423 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amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-25ubuntu1 [10.7 MB] Get:185 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] Get:186 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] Get:187 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] Get:188 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] Get:189 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] Get:190 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] Get:191 http://ftpmaster.internal/ubuntu oracular/main amd64 dpkg-dev all 1.22.6ubuntu10 [1074 kB] Get:192 http://ftpmaster.internal/ubuntu oracular/main amd64 libdpkg-perl all 1.22.6ubuntu10 [269 kB] Get:193 http://ftpmaster.internal/ubuntu oracular/main amd64 patch amd64 2.7.6-7build3 [104 kB] Get:194 http://ftpmaster.internal/ubuntu oracular/main amd64 make amd64 4.3-4.1build2 [180 kB] Get:195 http://ftpmaster.internal/ubuntu oracular/main amd64 lto-disabled-list all 48 [12.3 kB] Get:196 http://ftpmaster.internal/ubuntu oracular/main amd64 libfakeroot amd64 1.34-1 [32.4 kB] Get:197 http://ftpmaster.internal/ubuntu oracular/main amd64 fakeroot amd64 1.34-1 [67.2 kB] Get:198 http://ftpmaster.internal/ubuntu oracular/main amd64 liblockfile-bin amd64 1.17-1build3 [11.2 kB] Get:199 http://ftpmaster.internal/ubuntu oracular/main amd64 liblockfile1 amd64 1.17-1build3 [6840 B] Get:200 http://ftpmaster.internal/ubuntu oracular/main amd64 lockfile-progs amd64 0.1.19+nmu1 [8854 B] Preconfiguring packages ... 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(both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... Selecting previously unselected package gcc-14-base:amd64. (Reading database ... 15837 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.1.0-1ubuntu1_amd64.deb ... Unpacking gcc-14-base:amd64 (14.1.0-1ubuntu1) ... Setting up gcc-14-base:amd64 (14.1.0-1ubuntu1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4build1) ... Preparing to unpack .../readline-common_8.2-4build1_all.deb ... Unpacking readline-common (8.2-4build1) over (8.2-1.3) ... Preparing to unpack .../libncursesw6_6.5-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5-2) over (6.4+20230625-2) ... Preparing to unpack .../libtinfo6_6.5-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.5-2) over (6.4+20230625-2) ... Setting up libtinfo6:amd64 (6.5-2) ... 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Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libhwasan0:amd64 (14.1.0-1ubuntu1) ... Setting up libcrypt-dev:amd64 (1:4.4.36-4build1) ... Setting up libasan8:amd64 (14.1.0-1ubuntu1) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1build1) ... Setting up libkrb5-3:amd64 (1.20.1-6ubuntu2) ... Setting up liblockfile1:amd64 (1.17-1build3) ... Setting up libperl5.38t64:amd64 (5.38.2-5) ... Setting up libtsan2:amd64 (14.1.0-1ubuntu1) ... Setting up libbinutils:amd64 (2.42-4ubuntu2) ... Setting up libisl23:amd64 (0.26-3build1) ... Setting up libc-dev-bin (2.39-0ubuntu8.1) ... Setting up openssl (3.0.13-0ubuntu4) ... Setting up libgpg-error-l10n (1.49-2) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:amd64 (14.1.0-1ubuntu1) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up liblsan0:amd64 (14.1.0-1ubuntu1) ... Setting up libitm1:amd64 (14.1.0-1ubuntu1) ... Setting up libkmod2:amd64 (31+20240202-2ubuntu7) ... Setting up libctf0:amd64 (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-25ubuntu1) ... Setting up debconf-i18n (1.5.86ubuntu1) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-5) ... Setting up libgprofng0:amd64 (2.42-4ubuntu2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19+nmu1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu10) ... Setting up libreadline8t64:amd64 (8.2-4build1) ... Setting up libgcc-13-dev:amd64 (13.2.0-25ubuntu1) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:amd64 (2.39-0ubuntu8.1) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up libstdc++-13-dev:amd64 (13.2.0-25ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.42-4ubuntu2) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-25ubuntu1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-25ubuntu1) ... Setting up binutils (2.42-4ubuntu2) ... Setting up dpkg-dev (1.22.6ubuntu10) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... Setting up gcc-13 (13.2.0-25ubuntu1) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:amd64 (1.3.0-3build3) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-25ubuntu1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libnss-nisplus:amd64 (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up libnss-nis:amd64 (3.1-0ubuntu7) ... Setting up libnsl-dev:amd64 (1.3.0-3build3) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-25ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Processing triggers for libc-bin (2.39-0ubuntu8.1) ... Processing triggers for debianutils (5.18) ... (Reading database ... 16069 files and directories currently installed.) Purging configuration files for libssl3:amd64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28289389 amd64 oracular-proposed -c chroot:build-PACKAGEBUILD-28289389 --arch=amd64 --dist=oracular-proposed --nolog -A toil_6.1.0-4.dsc Initiating build PACKAGEBUILD-28289389 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 12:29:36 UTC 2024 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-109.buildd +==============================================================================+ | toil 6.1.0-4 (amd64) Sat, 08 Jun 2024 11:59:20 +0000 | +==============================================================================+ Package: toil Version: 6.1.0-4 Source Version: 6.1.0-4 Distribution: oracular-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28289389/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/toil-GSAPTF/resolver-vnRPaL' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- toil_6.1.0-4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/toil-GSAPTF/toil-6.1.0' with '<>' I: NOTICE: Log filtering will replace 'build/toil-GSAPTF' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all:any, python3-setuptools, python3-configargparse, python3-docker, python3-dill, cwltool (>= 3.1.20240112164112), python3-schema-salad (>= 8.4.20230128170514), python3-enlighten, python3-wdlparse, python3-pytest, python3-pytest-xdist, python3-boto3 (>= 1.17), python3-stubserver, rsync, python3-yaml, docker.io, python3-urllib3, python3-sphinx, python3-sphinx-autoapi, python3-sphinx-autodoc-typehints, python3-sphinxcontrib.autoprogram, python3-pubsub, python3-doc, python3-tz, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all:any, python3-setuptools, python3-configargparse, python3-docker, python3-dill, cwltool (>= 3.1.20240112164112), python3-schema-salad (>= 8.4.20230128170514), python3-enlighten, python3-wdlparse, python3-pytest, python3-pytest-xdist, python3-boto3 (>= 1.17), python3-stubserver, rsync, python3-yaml, docker.io, python3-urllib3, python3-sphinx, python3-sphinx-autoapi, python3-sphinx-autodoc-typehints, python3-sphinxcontrib.autoprogram, python3-pubsub, python3-doc, python3-tz, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [604 B] Get:5 copy:/<>/apt_archive ./ Packages [667 B] Fetched 2234 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 perl-modules-5.36 psmisc systemd-dev uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev containerd cwl-upgrader cwltool debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docker.io docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings gettext gettext-base graphviz groff-base intltool-debian iptables libann0 libaom3 libarchive-zip-perl libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6 libdatrie1 libde265-0 libdebhelper-perl libdeflate0 libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0t64 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 libicu74 libip6tc2 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-sphinxdoc libjs-underscore libjson-perl liblab-gamut1 liblerc4 libltdl7 libmagic-mgc libmagic1t64 libmnl0 libnetfilter-conntrack3 libnfnetlink0 libnftnl11 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpopt0 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libtool libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6t64 libxtables12 libyaml-0-2 m4 man-db media-types netbase po-debconf python-babel-localedata python3 python3-alabaster python3-all python3-antlr4 python3-arcp python3-argcomplete python3-astroid python3-babel python3-blessed python3-boto3 python3-botocore python3-cachecontrol python3-certifi python3-chardet python3-coloredlogs python3-configargparse python3-cwl-utils python3-dateutil python3-dill python3-doc python3-docker python3-docutils python3-enlighten python3-execnet python3-filelock python3-humanfriendly python3-idna python3-imagesize python3-iniconfig python3-isodate python3-jinja2 python3-jmespath python3-lxml python3-markupsafe python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-pluggy python3-prefixed python3-prov python3-psutil python3-pubsub python3-pydot python3-pygments python3-pyparsing python3-pytest python3-pytest-xdist python3-rdflib python3-requests python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-schema-salad python3-setuptools python3-shellescape python3-six python3-snowballstemmer python3-sphinx python3-sphinx-autoapi python3-sphinx-autodoc-typehints python3-sphinxcontrib.autoprogram python3-spython python3-stubserver python3-typing-extensions python3-tz python3-unidecode python3-urllib3 python3-wcwidth python3-wdlparse python3-websocket python3-yaml python3.12 python3.12-doc python3.12-minimal rsync runc sgml-base sphinx-common x11-common xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc cwltool-doc dh-make flit python3-build python3-installer python3-wheel aufs-tools btrfs-progs cgroupfs-mount | cgroup-lite debootstrap docker-buildx docker-compose-v2 docker-doc rinse zfs-fuse | zfsutils gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff firewalld kmod libgd-tools low-memory-monitor libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e libheif-plugin-svtenc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-tk python3-venv cwl-utils python3-objgraph python3-examples docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended execnet-doc python-jinja2-doc python-lxml-doc python3-gdal python3-matplotlib python3-pygraphviz python3-scipy python-prov-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc python3-stemmer dvipng fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax python3-lib2to3 python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended texlive-latex-extra texlive-plain-generic singularity-container python3-brotli python3.12-venv binfmt-support openssh-client openssh-server python3-braceexpand sgml-base-doc Recommended packages: nodejs git pigz ubuntu-fan apparmor curl | wget | lynx fonts-liberation2 nftables libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin libheif-plugin-aomenc javascript-common libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils python3-pil python3-bs4 python3-cssselect python3-html5lib python3-numpy python3-sparqlwrapper black The following NEW packages will be installed: autoconf automake autopoint autotools-dev containerd cwl-upgrader cwltool debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docker.io docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings gettext gettext-base graphviz groff-base intltool-debian iptables libann0 libaom3 libarchive-zip-perl libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6 libdatrie1 libde265-0 libdebhelper-perl libdeflate0 libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0t64 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 libicu74 libip6tc2 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-sphinxdoc libjs-underscore libjson-perl liblab-gamut1 liblerc4 libltdl7 libmagic-mgc libmagic1t64 libmnl0 libnetfilter-conntrack3 libnfnetlink0 libnftnl11 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpopt0 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libtool libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6t64 libxtables12 libyaml-0-2 m4 man-db media-types netbase po-debconf python-babel-localedata python3 python3-alabaster python3-all python3-antlr4 python3-arcp python3-argcomplete python3-astroid python3-babel python3-blessed python3-boto3 python3-botocore python3-cachecontrol python3-certifi python3-chardet python3-coloredlogs python3-configargparse python3-cwl-utils python3-dateutil python3-dill python3-doc python3-docker python3-docutils python3-enlighten python3-execnet python3-filelock python3-humanfriendly python3-idna python3-imagesize python3-iniconfig python3-isodate python3-jinja2 python3-jmespath python3-lxml python3-markupsafe python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-pkg-resources python3-pluggy python3-prefixed python3-prov python3-psutil python3-pubsub python3-pydot python3-pygments python3-pyparsing python3-pytest python3-pytest-xdist python3-rdflib python3-requests python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-schema-salad python3-setuptools python3-shellescape python3-six python3-snowballstemmer python3-sphinx python3-sphinx-autoapi python3-sphinx-autodoc-typehints python3-sphinxcontrib.autoprogram python3-spython python3-stubserver python3-typing-extensions python3-tz python3-unidecode python3-urllib3 python3-wcwidth python3-wdlparse python3-websocket python3-yaml python3.12 python3.12-doc python3.12-minimal rsync runc sbuild-build-depends-main-dummy sgml-base sphinx-common x11-common xml-core 0 upgraded, 203 newly installed, 0 to remove and 0 not upgraded. Need to get 159 MB of archives. After this operation, 736 MB of additional disk space will be used. 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0.21-14ubuntu2 [422 kB] Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 runc amd64 1.1.12-0ubuntu3 [8599 kB] Get:52 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 containerd amd64 1.7.17-0ubuntu1 [29.8 MB] Get:53 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-1 [133 kB] Get:54 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-certifi all 2023.11.17-1 [165 kB] Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-chardet all 5.2.0+dfsg-1 [117 kB] Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-idna all 3.6-2.1 [49.0 kB] Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-urllib3 all 2.0.7-1 [113 kB] Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-requests all 2.31.0+dfsg-1ubuntu3 [51.0 kB] Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-msgpack amd64 1.0.3-3build2 [80.1 kB] Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cachecontrol all 0.14.0-1 [19.0 kB] Get:62 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mistune all 3.0.2-1 [32.8 kB] Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mypy-extensions all 1.0.0-1 [6148 B] Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-isodate all 0.6.1-2 [24.3 kB] Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pyparsing all 3.1.2-1 [86.4 kB] Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-rdflib all 6.3.2-1 [402 kB] Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.14.0-1 [11.2 kB] Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-schema-salad amd64 8.5.20240410123758-1 [1037 kB] Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 cwl-upgrader all 1.2.11-1 [16.0 kB] Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-argcomplete all 3.3.0-1 [34.5 kB] Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-humanfriendly all 10.0-5 [70.5 kB] Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cwl-utils all 0.33-1 [119 kB] Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-six all 1.16.0-6 [13.0 kB] Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 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libfreetype6 amd64 2.13.2+dfsg-1build3 [402 kB] Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] Get:93 http://ftpmaster.internal/ubuntu oracular/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] Get:94 http://ftpmaster.internal/ubuntu oracular/main amd64 libaom3 amd64 3.8.2-3 [1943 kB] Get:95 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-aomdec amd64 1.17.6-3 [9992 B] Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 libde265-0 amd64 1.0.15-1build3 [166 kB] Get:97 http://ftpmaster.internal/ubuntu oracular/main amd64 libheif-plugin-libde265 amd64 1.17.6-3 [8158 B] Get:98 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Get:108 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2build1 [161 kB] Get:109 http://ftpmaster.internal/ubuntu oracular/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] Get:110 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] Get:111 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] Get:112 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] Get:113 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB] Get:114 http://ftpmaster.internal/ubuntu oracular/main amd64 libltdl7 amd64 2.4.7-7build1 [40.3 kB] Get:115 http://ftpmaster.internal/ubuntu oracular/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] Get:116 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2build1 [73.0 kB] Get:117 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] Get:118 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai-data all 0.1.29-2build1 [158 kB] Get:119 http://ftpmaster.internal/ubuntu oracular/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] Get:120 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] Get:121 http://ftpmaster.internal/ubuntu oracular/main amd64 libpango-1.0-0 amd64 1.52.2+ds-1 [233 kB] Get:122 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangoft2-1.0-0 amd64 1.52.2+ds-1 [42.6 kB] Get:123 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangocairo-1.0-0 amd64 1.52.2+ds-1 [28.7 kB] Get:124 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpathplan4 amd64 2.42.2-9ubuntu1 [24.0 kB] Get:125 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgvc6 amd64 2.42.2-9ubuntu1 [716 kB] Get:126 http://ftpmaster.internal/ubuntu oracular/universe amd64 libgvpr2 amd64 2.42.2-9ubuntu1 [187 kB] Get:127 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblab-gamut1 amd64 2.42.2-9ubuntu1 [1886 kB] Get:128 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] Get:129 http://ftpmaster.internal/ubuntu oracular/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB] Get:130 http://ftpmaster.internal/ubuntu oracular/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB] Get:131 http://ftpmaster.internal/ubuntu oracular/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] Get:132 http://ftpmaster.internal/ubuntu oracular/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] Get:133 http://ftpmaster.internal/ubuntu oracular/main amd64 libxaw7 amd64 2:1.0.14-1build2 [187 kB] Get:134 http://ftpmaster.internal/ubuntu oracular/universe amd64 graphviz amd64 2.42.2-9ubuntu1 [642 kB] Get:135 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pydot all 2.0.0-3 [24.9 kB] Get:136 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-shellescape all 3.4.1-5 [5064 B] Get:137 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-spython all 0.3.13-2 [56.2 kB] Get:138 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-arcp all 0.2.1-6 [13.6 kB] Get:139 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB] Get:140 http://ftpmaster.internal/ubuntu oracular/universe amd64 cwltool all 3.1.20240404144621-2 [509 kB] Get:141 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 libdebhelper-perl all 13.15.3ubuntu2 [92.3 kB] Get:142 http://ftpmaster.internal/ubuntu oracular/main amd64 libtool all 2.4.7-7build1 [166 kB] Get:143 http://ftpmaster.internal/ubuntu oracular/main amd64 dh-autoreconf all 20 [16.1 kB] Get:144 http://ftpmaster.internal/ubuntu oracular/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:145 http://ftpmaster.internal/ubuntu oracular/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] Get:146 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python3-enlighten amd64 1.11.2-1 [41.9 kB] Get:185 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-execnet all 2.1.1-1 [33.4 kB] Get:186 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-imagesize all 1.4.1-1 [6844 B] Get:187 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] Get:188 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-markupsafe amd64 2.1.5-1build2 [12.7 kB] Get:189 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-jinja2 all 3.1.3-1ubuntu1 [108 kB] Get:190 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] Get:191 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pubsub all 4.0.3-7 [44.8 kB] Get:192 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pytest all 8.2.2-1ubuntu1 [250 kB] Get:193 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest-xdist all 3.6.1-1 [33.8 kB] Get:194 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http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-wdlparse all 0.1.0-3 [70.8 kB] Preconfiguring packages ... Fetched 159 MB in 2s (86.2 MB/s) Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... 16069 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.3-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.3-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.3-1_amd64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Setting up libpython3.12-minimal:amd64 (3.12.3-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.12-minimal (3.12.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 16387 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.3-0ubuntu1_amd64.deb ... 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Setting up libmagic1t64:amd64 (1:5.45-3build1) ... Setting up x11-common (1:7.7+23ubuntu3) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libdeflate0:amd64 (1.20-1) ... Setting up gettext-base (0.21-14ubuntu2) ... Setting up m4 (1.4.19-4build1) ... Setting up file (1:5.45-3build1) ... Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... Setting up runc (1.1.12-0ubuntu3) ... Setting up libelf1t64:amd64 (0.191-1) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up libdw1t64:amd64 (0.191-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.80.2-1ubuntu1) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.2+dfsg-1build3) ... Setting up libx11-data (2:1.8.7-1build1) ... Setting up libpathplan4:amd64 (2.42.2-9ubuntu1) ... Setting up libann0 (1.1.2+doc-9build1) ... Setting up libfribidi0:amd64 (1.0.13-3build1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libmnl0:amd64 (1.0.5-2build1) ... Setting up autopoint (0.21-14ubuntu2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... Setting up libxtables12:amd64 (1.8.10-3ubuntu2) ... Setting up libltdl7:amd64 (2.4.7-7build1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libicu74:amd64 (74.2-1ubuntu3) ... Setting up dwz (0.15-1build6) ... Setting up libnfnetlink0:amd64 (1.0.2-3) ... Setting up libuchardet0:amd64 (0.0.8-1build1) ... Setting up libjson-perl (4.10000-1) ... Setting up debugedit (1:5.0-5build2) ... Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... Setting up libthai-data (0.1.29-2build1) ... Setting up netbase (6.4) ... Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2build1) ... Setting up sgml-base (1.31) ... Setting up libcdt5:amd64 (2.42.2-9ubuntu1) ... Setting up libcgraph6:amd64 (2.42.2-9ubuntu1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libde265-0:amd64 (1.0.15-1build3) ... Setting up containerd (1.7.17-0ubuntu1) ... Created symlink '/etc/systemd/system/multi-user.target.wants/containerd.service' → '/usr/lib/systemd/system/containerd.service'. Setting up libbsd0:amd64 (0.12.2-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpopt0:amd64 (1.19+dfsg-1build1) ... Setting up libjpeg8:amd64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:amd64 (2:1.0.10-1build3) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu6) ... Setting up libxcb1:amd64 (1.17.0-2) ... Setting up gettext (0.21-14ubuntu2) ... Setting up libpython3.12-stdlib:amd64 (3.12.3-1) ... Setting up libtool (2.4.7-7build1) ... Setting up libxcb-render0:amd64 (1.17.0-2) ... Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... Setting up python3.12 (3.12.3-1) ... Setting up libnftnl11:amd64 (1.2.6-2build1) ... Setting up libxcb-shm0:amd64 (1.17.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2build1) ... Setting up libjs-sphinxdoc (7.2.6-8) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgvpr2:amd64 (2.42.2-9ubuntu1) ... Setting up libnetfilter-conntrack3:amd64 (1.0.9-6build1) ... Setting up groff-base (1.23.0-4) ... Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu2) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... Setting up libx11-6:amd64 (2:1.8.7-1build1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... Setting up python3.12-doc (3.12.3-1) ... Setting up libsm6:amd64 (2:1.2.3-1build3) ... Setting up python3-doc (3.12.3-0ubuntu1) ... Setting up rsync (3.3.0-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-stdlib:amd64 (3.12.3-0ubuntu1) ... Setting up fontconfig (2.15.0-1.1ubuntu2) ... Regenerating fonts cache... done. Setting up libxpm4:amd64 (1:3.5.17-1build2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... Setting up iptables (1.8.10-3ubuntu2) ... update-alternatives: using /usr/sbin/iptables-legacy to provide /usr/sbin/iptables (iptables) in auto mode update-alternatives: using /usr/sbin/ip6tables-legacy to provide /usr/sbin/ip6tables (ip6tables) in auto mode update-alternatives: using /usr/sbin/iptables-nft to provide /usr/sbin/iptables (iptables) in auto mode update-alternatives: using /usr/sbin/ip6tables-nft to provide /usr/sbin/ip6tables (ip6tables) in auto mode update-alternatives: using /usr/sbin/arptables-nft to provide /usr/sbin/arptables (arptables) in auto mode update-alternatives: using /usr/sbin/ebtables-nft to provide /usr/sbin/ebtables (ebtables) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libxext6:amd64 (2:1.3.4-1build2) ... Setting up python3 (3.12.3-0ubuntu1) ... Setting up docker.io (26.1.3-0ubuntu1) ... info: Selecting GID from range 100 to 999 ... info: Adding group `docker' (GID 102) ... Created symlink '/etc/systemd/system/multi-user.target.wants/docker.service' → '/usr/lib/systemd/system/docker.service'. Created symlink '/etc/systemd/system/sockets.target.wants/docker.socket' → '/usr/lib/systemd/system/docker.socket'. invoke-rc.d: unknown initscript, /etc/init.d/docker not found. Running in chroot, ignoring request. Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' → '/usr/lib/systemd/system/man-db.timer'. Setting up python3-markupsafe (2.1.5-1build2) ... Setting up libcairo2:amd64 (1.18.0-3build1) ... Setting up python3-psutil (5.9.8-2build2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-prefixed (0.7.0-1) ... Setting up python3-stubserver (1.1-4) ... Setting up python3-six (1.16.0-6) ... Setting up python3-isodate (0.6.1-2) ... Setting up python3-roman (3.3-3) ... Setting up python3-jinja2 (3.1.3-1ubuntu1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-humanfriendly (10.0-5) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-spython (0.3.13-2) ... Setting up python3-snowballstemmer (2.2.0-4build1) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-dill (0.3.8-1) ... Setting up sphinx-common (7.2.6-8) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... Setting up python3-idna (3.6-2.1) ... Setting up python3-typing-extensions (4.12.1-1) ... Setting up python3-urllib3 (2.0.7-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-pubsub (4.0.3-7) ... Setting up python3-lxml:amd64 (5.2.1-1) ... Setting up python3-rdflib (6.3.2-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-msgpack (1.0.3-3build2) ... Setting up python3-shellescape (3.4.1-5) ... Setting up libpangoft2-1.0-0:amd64 (1.52.2+ds-1) ... Setting up python3-argcomplete (3.3.0-1) ... Setting up python3-execnet (2.1.1-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-mistune (3.0.2-1) ... Setting up python3-unidecode (1.3.8-1) ... Setting up python3-websocket (1.7.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.52.2+ds-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... Setting up python3-configargparse (1.7-1) ... Setting up python3-arcp (0.2.1-6) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-antlr4 (4.9.2-1) ... Setting up python3-filelock (3.14.0-1) ... Setting up libxmu6:amd64 (2:1.1.3-3build2) ... Setting up python3-setuptools (68.1.2-2ubuntu1) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pytest (8.2.2-1ubuntu1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-mypy-extensions (1.0.0-1) ... Setting up python3-blessed (1.20.0-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-1) ... Setting up python3-all (3.12.3-0ubuntu1) ... Setting up python3-yaml (6.0.1-2build2) ... Setting up debhelper (13.15.3ubuntu2) ... Setting up libxaw7:amd64 (2:1.0.14-1build2) ... Setting up python3-networkx (3.2.1-4ubuntu1) ... Setting up python3-prov (2.0.0-2) ... Setting up python3-enlighten (1.11.2-1) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.31.0+dfsg-1ubuntu3) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-astroid (3.2.2-1) ... Setting up python3-cachecontrol (0.14.0-1) ... Setting up python3-wdlparse (0.1.0-3) ... Setting up dh-python (6.20240422) ... Setting up python3-pytest-xdist (3.6.1-1) ... Setting up python3-docker (5.0.3-1ubuntu1) ... Setting up python3-schema-salad (8.5.20240410123758-1) ... Setting up cwl-upgrader (1.2.11-1) ... Setting up python3-botocore (1.34.46+repack-1ubuntu1) ... Setting up python3-s3transfer (0.10.1-1ubuntu2) ... Setting up python3-cwl-utils (0.33-1) ... Setting up python3-boto3 (1.34.46+dfsg-1ubuntu1) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-3) ... Setting up libheif1:amd64 (1.17.6-3) ... Setting up libgd3:amd64 (2.3.3-9ubuntu5) ... Setting up libgvc6 (2.42.2-9ubuntu1) ... Setting up libheif-plugin-aomdec:amd64 (1.17.6-3) ... Setting up graphviz (2.42.2-9ubuntu1) ... Setting up python3-pydot (2.0.0-3) ... Setting up cwltool (3.1.20240404144621-2) ... Processing triggers for libc-bin (2.39-0ubuntu8.1) ... Processing triggers for systemd (256~rc3-5ubuntu1) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-8) ... Setting up python3-sphinx-autodoc-typehints (1.25.3-1) ... Setting up python3-sphinx-autoapi (3.0.0-0.1) ... Setting up python3-sphinxcontrib.autoprogram (0.1.9-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-182-generic #202-Ubuntu SMP Fri Apr 26 12:29:36 UTC 2024 amd64 (x86_64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu10 g++-13_13.2.0-25ubuntu1 gcc-13_13.2.0-25ubuntu1 libc6-dev_2.39-0ubuntu8.1 libstdc++-13-dev_13.2.0-25ubuntu1 libstdc++6_14.1.0-1ubuntu1 linux-libc-dev_6.8.0-31.31 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.9.4 apt-utils_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13.1ubuntu1 base-passwd_3.6.3build1 bash_5.2.21-2.1ubuntu1 bash-completion_1:2.14.0-1 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-x86-64-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 containerd_1.7.17-0ubuntu1 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-25ubuntu1 cpp-13-x86-64-linux-gnu_13.2.0-25ubuntu1 cpp-x86-64-linux-gnu_4:13.2.0-7ubuntu1 cwl-upgrader_1.2.11-1 cwltool_3.1.20240404144621-2 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.15.3ubuntu2 debianutils_5.18 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-python_6.20240422 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1build1 docker.io_26.1.3-0ubuntu1 docutils-common_0.20.1+dfsg-3 dpkg_1.22.6ubuntu10 dpkg-dev_1.22.6ubuntu10 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.34-1 file_1:5.45-3build1 findutils_4.9.0-6 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libargon2-1_0~20190702+dfsg-4build1 libasan8_14.1.0-1ubuntu1 libassuan0_2.5.6-1build1 libatomic1_14.1.0-1ubuntu1 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu6 libbrotli1_1.1.0-2build2 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8.1 libc-dev-bin_2.39-0ubuntu8.1 libc6_2.39-0ubuntu8.1 libc6-dev_2.39-0ubuntu8.1 libcairo2_1.18.0-3build1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5ubuntu2 libcc1-0_14.1.0-1ubuntu1 libcdt5_2.42.2-9ubuntu1 libcgraph6_2.42.2-9ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu5 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libdatrie1_0.2.13-3build1 libdb5.3t64_5.3.28+dfsg2-7 libde265-0_1.0.15-1build3 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.15.3ubuntu2 libdeflate0_1.20-1 libdevmapper1.02.1_2:1.02.185-3ubuntu4 libdpkg-perl_1.22.6ubuntu10 libdw1t64_0.191-1 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python3_3.12.3-0ubuntu1 python3-alabaster_0.7.16-0.1 python3-all_3.12.3-0ubuntu1 python3-antlr4_4.9.2-1 python3-arcp_0.2.1-6 python3-argcomplete_3.3.0-1 python3-astroid_3.2.2-1 python3-babel_2.14.0-1 python3-blessed_1.20.0-1 python3-boto3_1.34.46+dfsg-1ubuntu1 python3-botocore_1.34.46+repack-1ubuntu1 python3-cachecontrol_0.14.0-1 python3-certifi_2023.11.17-1 python3-chardet_5.2.0+dfsg-1 python3-coloredlogs_15.0.1-1 python3-configargparse_1.7-1 python3-cwl-utils_0.33-1 python3-dateutil_2.9.0-2 python3-dill_0.3.8-1 python3-doc_3.12.3-0ubuntu1 python3-docker_5.0.3-1ubuntu1 python3-docutils_0.20.1+dfsg-3 python3-enlighten_1.11.2-1 python3-execnet_2.1.1-1 python3-filelock_3.14.0-1 python3-humanfriendly_10.0-5 python3-idna_3.6-2.1 python3-imagesize_1.4.1-1 python3-iniconfig_1.1.1-2 python3-isodate_0.6.1-2 python3-jinja2_3.1.3-1ubuntu1 python3-jmespath_1.0.1-1 python3-lxml_5.2.1-1 python3-markupsafe_2.1.5-1build2 python3-minimal_3.12.3-0ubuntu1 python3-mistune_3.0.2-1 python3-msgpack_1.0.3-3build2 python3-mypy-extensions_1.0.0-1 python3-networkx_3.2.1-4ubuntu1 python3-packaging_24.0-1 python3-pkg-resources_68.1.2-2ubuntu1 python3-pluggy_1.5.0-1 python3-prefixed_0.7.0-1 python3-prov_2.0.0-2 python3-psutil_5.9.8-2build2 python3-pubsub_4.0.3-7 python3-pydot_2.0.0-3 python3-pygments_2.17.2+dfsg-1 python3-pyparsing_3.1.2-1 python3-pytest_8.2.2-1ubuntu1 python3-pytest-xdist_3.6.1-1 python3-rdflib_6.3.2-1 python3-requests_2.31.0+dfsg-1ubuntu3 python3-roman_3.3-3 python3-ruamel.yaml_0.18.6+ds-3 python3-ruamel.yaml.clib_0.2.8+ds-1 python3-s3transfer_0.10.1-1ubuntu2 python3-schema-salad_8.5.20240410123758-1 python3-setuptools_68.1.2-2ubuntu1 python3-shellescape_3.4.1-5 python3-six_1.16.0-6 python3-snowballstemmer_2.2.0-4build1 python3-sphinx_7.2.6-8 python3-sphinx-autoapi_3.0.0-0.1 python3-sphinx-autodoc-typehints_1.25.3-1 python3-sphinxcontrib.autoprogram_0.1.9-1 python3-spython_0.3.13-2 python3-stubserver_1.1-4 python3-typing-extensions_4.12.1-1 python3-tz_2024.1-2 python3-unidecode_1.3.8-1 python3-urllib3_2.0.7-1 python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1 python3-wdlparse_0.1.0-3 python3-websocket_1.7.0-1 python3-yaml_6.0.1-2build2 python3.12_3.12.3-1 python3.12-doc_3.12.3-1 python3.12-minimal_3.12.3-1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 rsync_3.3.0-1 runc_1.1.12-0ubuntu3 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 sgml-base_1.31 sphinx-common_7.2.6-8 systemd_256~rc3-5ubuntu1 systemd-dev_256~rc3-5ubuntu1 systemd-sysv_256~rc3-5ubuntu1 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-4ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 x11-common_1:7.7+23ubuntu3 xml-core_0.19 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: toil Binary: toil Architecture: all Version: 6.1.0-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Michael R. Crusoe Homepage: https://github.com/BD2KGenomics/toil Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/toil Vcs-Git: https://salsa.debian.org/med-team/toil.git Testsuite: autopkgtest Testsuite-Triggers: docker.io, python3-all, python3-boto3, python3-mock, python3-pytest, python3-pytest-xdist, python3-stubserver, python3-wdlparse, python3-yaml, quilt, rsync Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all:any, python3-setuptools, python3-configargparse, python3-docker, python3-dill, cwltool (>= 3.1.20240112164112), python3-schema-salad (>= 8.4.20230128170514), python3-enlighten, python3-wdlparse, python3-pytest , python3-pytest-xdist , python3-boto3 (>= 1.17) , python3-stubserver , rsync , python3-yaml , docker.io , python3-urllib3, python3-sphinx , python3-sphinx-autoapi , python3-sphinx-autodoc-typehints , python3-sphinxcontrib.autoprogram , python3-pubsub , python3-doc , python3-tz Package-List: toil deb net optional arch=all Checksums-Sha1: dd6f8e866e9d8d5a6430a0e75ce4b3cd830a9277 7705160 toil_6.1.0.orig.tar.gz 528de5396847af7ec69ccdd1758bd0bdca58d724 13528 toil_6.1.0-4.debian.tar.xz Checksums-Sha256: 6c7d13aac5e55fb2d515c50b8d49589c76e52132c8a1f65c3de0c1c9a518a5d2 7705160 toil_6.1.0.orig.tar.gz 7d7bd25e8010320130f2ccd07d1e62f5913d83eae7596433cab4d4c8b336231a 13528 toil_6.1.0-4.debian.tar.xz Files: a369139d8c42282a7f245846991f23a5 7705160 toil_6.1.0.orig.tar.gz 17761c6230ef3db4bb8cee80e8c34fae 13528 toil_6.1.0-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYvspEACgkQPCZ2P2xn 5uJb+g/+I9pF3j+5iZE4gfTUUbOB7Nj2uMJUkQkfVNIg4G4hOoJiQNYuq36GgMXZ p2T4W7OQPBbaWPs38Jv5iWeri9Y17UTLuoC8HYKOm1O06eD70Bysa5QwYHJTs9k9 Zn2IJGhAhSHIouDz88TSqeBXlI3Vxa2x+4ZydUomNlqgY0idgK7imutaOo002Z6o 0qTvrPDTCDZ582EZH4Nf7zlUlh4mw4tT01sEh7/krTpeiOUrrtdLitNm87GTIhYc 7H8DeOKyLOBzMMgJ7KmFATUnZXPszx6E32CRlzBkdxoP0kQ8s4QcAGmfhEKSk6Ka 3KnnXS0yOWKucJFPK/KlmecpVYRWeVUfJBzr91SSlb5Pyghq3EZClYXUM7i7YCoI 3WShY4iC5yI0x2HI1QB/whS4ZkSSUMe3Ul88WcusDNLCdkRufJcFKdMqjVisdMG6 IgZuJXgSMxZeDoy22EDDEnOOFXHNuFv9lekodYSiUWJTuvDOGBfa9flscLqheI11 1BJsrhxNEuOxjfY4pwRoYo6shW3w/6p4nbKjAUJs5YtracsYQ0BNc+nRWUNdDdwi Hi1QeMTBxaC0v+dReOUBE/fEJpUA2OAdYWXwfAfsxN7wQslgIW/1iwqEgXW9h1ya jDmw4iUTUQMvvr66clMRS9HAv7R71HOm2IDxo/kUhHxtkFWBiP4= =NTHN -----END PGP SIGNATURE----- gpgv: Signature made Mon Apr 29 14:45:37 2024 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./toil_6.1.0-4.dsc: no acceptable signature found dpkg-source: info: extracting toil in /<> dpkg-source: info: unpacking toil_6.1.0.orig.tar.gz dpkg-source: info: unpacking toil_6.1.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying soften-configargparser-deps dpkg-source: info: applying intersphinx dpkg-source: info: applying setting_version.patch dpkg-source: info: applying no_galaxy_lib dpkg-source: info: applying debianize_docs dpkg-source: info: applying soften-mesos-deps dpkg-source: info: applying atomic_copy_as_alternative.patch dpkg-source: info: applying soften-cwltool-dep.patch dpkg-source: info: applying accept_debian_packaged_docker_version.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28289389 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28289389 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28289389 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package toil dpkg-buildpackage: info: source version 6.1.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from toil-6.1.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf .pybuild rm -rf docs/_build find . -name "*.pyc" -delete make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/version.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/worker.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/leader.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/resource.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/bus.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/toilState.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/exceptions.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/deferred.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/job.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/statsAndLogging.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/common.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/realtimeLogger.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil copying src/toil/serviceManager.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil creating /<>/.pybuild/cpython3_3.12_toil/build/toil/fileStores copying src/toil/fileStores/cachingFileStore.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/fileStores copying src/toil/fileStores/nonCachingFileStore.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/fileStores copying src/toil/fileStores/abstractFileStore.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/fileStores copying src/toil/fileStores/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/fileStores creating /<>/.pybuild/cpython3_3.12_toil/build/toil/wdl copying src/toil/wdl/wdltoil.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/wdl copying src/toil/wdl/utils.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/wdl copying src/toil/wdl/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/wdl creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test copying src/toil/test/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test creating /<>/.pybuild/cpython3_3.12_toil/build/toil/cwl copying src/toil/cwl/conftest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/cwl copying src/toil/cwl/utils.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/cwl copying src/toil/cwl/cwltoil.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/cwl copying src/toil/cwl/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/cwl creating /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilRsyncCluster.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilClean.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilUpdateEC2Instances.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilMain.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilStats.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilServer.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilSshCluster.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilLaunchCluster.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilStatus.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilDebugFile.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilDebugJob.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilKill.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilDestroyCluster.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils copying src/toil/utils/toilConfig.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/utils creating /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners copying src/toil/provisioners/node.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners copying src/toil/provisioners/clusterScaler.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners copying src/toil/provisioners/abstractProvisioner.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners copying src/toil/provisioners/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners copying src/toil/provisioners/gceProvisioner.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners creating /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/torque.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/kubernetes.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/gridengine.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/local_support.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/options.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/slurm.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/abstractGridEngineBatchSystem.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/contained_executor.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/singleMachine.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/registry.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/lsfHelper.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/cleanup_support.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/abstractBatchSystem.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/awsBatch.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/htcondor.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/lsf.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems copying src/toil/batchSystems/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems creating /<>/.pybuild/cpython3_3.12_toil/build/toil/options copying src/toil/options/cwl.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/options copying src/toil/options/common.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/options copying src/toil/options/wdl.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/options copying src/toil/options/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/options creating /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/expando.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/misc.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/humanize.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/retry.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/memoize.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/accelerators.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/iterables.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/exceptions.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/ec2nodes.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/threading.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/resources.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/throttle.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/io.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/compatibility.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/ec2.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/bioio.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/docker.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/objects.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/generatedEC2Lists.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib copying src/toil/lib/conversions.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib creating /<>/.pybuild/cpython3_3.12_toil/build/toil/server copying src/toil/server/celery_app.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server copying src/toil/server/utils.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server copying src/toil/server/wsgi_app.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server copying src/toil/server/app.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server copying src/toil/server/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server creating /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores copying src/toil/jobStores/fileJobStore.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores copying src/toil/jobStores/conftest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores copying src/toil/jobStores/utils.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores copying src/toil/jobStores/googleJobStore.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores copying src/toil/jobStores/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores copying src/toil/jobStores/abstractJobStore.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/mesos copying src/toil/test/mesos/MesosDataStructuresTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/mesos copying src/toil/test/mesos/helloWorld.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/mesos copying src/toil/test/mesos/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/mesos copying src/toil/test/mesos/stress.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/mesos creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/wdl copying src/toil/test/wdl/wdltoil_test.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/wdl copying src/toil/test/wdl/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/wdl creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/systemTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/jobEncapsulationTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/resourceTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/retainTempDirTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/jobFileStoreTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/checkpointTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/resumabilityTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/helloWorldTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/miscTests.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/dockerCheckTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/busTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/jobTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/promisedRequirementTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/fileStoreTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/realtimeLoggerTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/jobDescriptionTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/threadingTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/deferredFunctionTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/regularLogTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/workerTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/userDefinedJobArgTypeTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/jobServiceTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/autoDeploymentTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/importExportFileTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/toilContextManagerTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/restartDAGTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src copying src/toil/test/src/promisesTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/src creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cactus copying src/toil/test/cactus/test_cactus_integration.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cactus copying src/toil/test/cactus/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cactus creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/conftest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/cwlTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/utils copying src/toil/test/utils/toilKillTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/utils copying src/toil/test/utils/toilDebugTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/utils copying src/toil/test/utils/utilsTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/utils copying src/toil/test/utils/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/utils creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners copying src/toil/test/provisioners/clusterScalerTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners copying src/toil/test/provisioners/gceProvisionerTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners copying src/toil/test/provisioners/clusterTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners copying src/toil/test/provisioners/restartScript.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners copying src/toil/test/provisioners/provisionerTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners copying src/toil/test/provisioners/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems copying src/toil/test/batchSystems/batchSystemTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems copying src/toil/test/batchSystems/test_lsf_helper.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems copying src/toil/test/batchSystems/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems copying src/toil/test/batchSystems/test_slurm.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/batchSystems creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/sort copying src/toil/test/sort/sort.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/sort copying src/toil/test/sort/restart_sort.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/sort copying src/toil/test/sort/sortTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/sort copying src/toil/test/sort/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/sort creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/options copying src/toil/test/options/options.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/options copying src/toil/test/options/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/options creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/docs copying src/toil/test/docs/scriptsTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/docs copying src/toil/test/docs/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/docs creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib copying src/toil/test/lib/test_conversions.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib copying src/toil/test/lib/dockerTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib copying src/toil/test/lib/test_ec2.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib copying src/toil/test/lib/test_misc.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib copying src/toil/test/lib/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/server copying src/toil/test/server/serverTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/server copying src/toil/test/server/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/server creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/jobStores copying src/toil/test/jobStores/jobStoreTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/jobStores copying src/toil/test/jobStores/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/jobStores creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners/aws copying src/toil/test/provisioners/aws/awsProvisionerTest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners/aws copying src/toil/test/provisioners/aws/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/provisioners/aws creating /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib/aws copying src/toil/test/lib/aws/test_utils.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib/aws copying src/toil/test/lib/aws/test_iam.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib/aws copying src/toil/test/lib/aws/test_s3.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib/aws copying src/toil/test/lib/aws/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/lib/aws creating /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners/aws copying src/toil/provisioners/aws/awsProvisioner.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners/aws copying src/toil/provisioners/aws/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/provisioners/aws creating /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/conftest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/executor.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/batchSystem.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos creating /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos/test copying src/toil/batchSystems/mesos/test/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/batchSystems/mesos/test creating /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption copying src/toil/lib/encryption/conftest.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption copying src/toil/lib/encryption/_dummy.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption copying src/toil/lib/encryption/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption copying src/toil/lib/encryption/_nacl.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/encryption creating /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws copying src/toil/lib/aws/utils.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws copying src/toil/lib/aws/ami.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws copying src/toil/lib/aws/session.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws copying src/toil/lib/aws/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws copying src/toil/lib/aws/iam.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/lib/aws creating /<>/.pybuild/cpython3_3.12_toil/build/toil/server/api_spec copying src/toil/server/api_spec/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/api_spec creating /<>/.pybuild/cpython3_3.12_toil/build/toil/server/cli copying src/toil/server/cli/wes_cwl_runner.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/cli copying src/toil/server/cli/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/cli creating /<>/.pybuild/cpython3_3.12_toil/build/toil/server/wes copying src/toil/server/wes/amazon_wes_utils.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/wes copying src/toil/server/wes/toil_backend.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/wes copying src/toil/server/wes/abstract_backend.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/wes copying src/toil/server/wes/tasks.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/wes copying src/toil/server/wes/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/wes creating /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores/aws copying src/toil/jobStores/aws/jobStore.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores/aws copying src/toil/jobStores/aws/utils.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores/aws copying src/toil/jobStores/aws/__init__.py -> /<>/.pybuild/cpython3_3.12_toil/build/toil/jobStores/aws copying src/toil/test/cwl/conditional_wf.yaml -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/colon_test_output_job.yaml -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/download.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/file_from_directory.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/revsort.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/load_contents.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/mpi_simple.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/echo-stderr.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/test_filename_conflict_detection_at_root.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/echo.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/echo-stdout-log-dir.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/sorttool.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/glob_dir.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/echo_string_scatter_capture_stdout.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/revtool.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/alwaysfails.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/s3_secondary_file.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/conditional_wf.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/directory_from_directory.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/test_filename_conflict_detection.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/preemptible_expression.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/preemptible.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/download_directory.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/seqtk_seq.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/download_subdirectory.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/nvidia_smi.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/revsort2.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/colon_test_output.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/stream.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/test_filename_conflict_resolution.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/echo_string.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/test/cwl/revtool2.cwl -> /<>/.pybuild/cpython3_3.12_toil/build/toil/test/cwl copying src/toil/server/api_spec/workflow_execution_service.swagger.yaml -> /<>/.pybuild/cpython3_3.12_toil/build/toil/server/api_spec PYTHONPATH=/<>/src /usr/bin/make -C docs man SPHINXOPTS="" make[2]: Entering directory '/<>/docs' Running Sphinx v7.2.6 making output directory... done [autosummary] generating autosummary for: appendices/architecture.rst, appendices/aws_min_permissions.rst, appendices/deploy.rst, appendices/environment_vars.rst, contributing/checklists.rst, contributing/contributing.rst, cwl/introduction.rst, cwl/running.rst, gettingStarted/install.rst, gettingStarted/quickStart.rst, ..., running/cloud/kubernetes.rst, running/debugging.rst, running/hpcEnvironments.rst, running/introduction.rst, running/server/wes.rst, running/utils.rst, wdl/conformance.rst, wdl/developing.rst, wdl/introduction.rst, wdl/running.rst [AutoAPI] Ignoring /<>/src/toil/test/cwl/mock_mpi/fake_mpi_run.py [AutoAPI] Ignoring /<>/src/toil/test/utils/ABCWorkflowDebug/debugWorkflow.py [AutoAPI] Ignoring /<>/src/toil/test/utils/ABCWorkflowDebug/mkFile.py [AutoAPI] Ignoring /<>/src/toil/test/docs/scripts/tutorial_promises.py [AutoAPI] Ignoring /<>/src/toil/test/docs/scripts/tutorial_multiplejobs2.py [AutoAPI] Ignoring /<>/src/toil/test/docs/scripts/tutorial_arguments.py [AutoAPI] Ignoring /<>/src/toil/test/docs/scripts/tutorial_staging.py [AutoAPI] Ignoring /<>/src/toil/test/docs/scripts/tutorial_services.py [AutoAPI] Ignoring 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WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://cwltool.readthedocs.io/en/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='cwltool.readthedocs.io', port=443): Max retries exceeded with url: /en/latest/objects.inv (Caused by NameResolutionError(": Failed to resolve 'cwltool.readthedocs.io' ([Errno -2] Name or service not known)")) building [mo]: targets for 0 po files that are out of date writing output... building [man]: all manpages updating environment: [new config] 239 added, 0 changed, 0 removed reading sources... [ 0%] appendices/architecture reading sources... [ 1%] appendices/aws_min_permissions reading sources... [ 1%] appendices/deploy reading sources... [ 2%] appendices/environment_vars reading sources... [ 2%] autoapi/index reading sources... [ 3%] autoapi/toil/batchSystems/abstractBatchSystem/index reading sources... 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[100%] wdl/running looking for now-outdated files... none found pickling environment... done checking consistency... /<>/docs/gettingStarted/install.rst: WARNING: document isn't included in any toctree done writing... toil.1 { gettingStarted/quickStart cwl/introduction cwl/running wdl/introduction wdl/running wdl/developing wdl/conformance running/introduction running/cliOptions running/utils running/debugging running/cloud/cloud running/cloud/clusterUtils running/cloud/kubernetes running/cloud/amazon running/cloud/gce running/hpcEnvironments running/server/wes python/developing python/toilAPI python/toilAPIJobstore python/toilAPIJobFunctions python/toilAPIMethods python/toilAPIRunner python/toilAPIFilestore python/toilAPIBatchsystem python/toilAPIService python/toilAPIExceptions contributing/contributing contributing/checklists appendices/architecture appendices/aws_min_permissions appendices/deploy appendices/environment_vars autoapi/index autoapi/toil/index autoapi/toil/batchSystems/index autoapi/toil/batchSystems/mesos/index autoapi/toil/batchSystems/mesos/test/index autoapi/toil/batchSystems/mesos/batchSystem/index autoapi/toil/batchSystems/mesos/conftest/index autoapi/toil/batchSystems/mesos/executor/index autoapi/toil/batchSystems/abstractBatchSystem/index autoapi/toil/batchSystems/abstractGridEngineBatchSystem/index autoapi/toil/batchSystems/awsBatch/index autoapi/toil/batchSystems/cleanup_support/index autoapi/toil/batchSystems/contained_executor/index autoapi/toil/batchSystems/gridengine/index autoapi/toil/batchSystems/htcondor/index autoapi/toil/batchSystems/kubernetes/index autoapi/toil/batchSystems/local_support/index autoapi/toil/batchSystems/lsf/index autoapi/toil/batchSystems/lsfHelper/index autoapi/toil/batchSystems/options/index autoapi/toil/batchSystems/registry/index autoapi/toil/batchSystems/singleMachine/index autoapi/toil/batchSystems/slurm/index autoapi/toil/batchSystems/torque/index autoapi/toil/cwl/index 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autoapi/toil/utils/toilRsyncCluster/index autoapi/toil/utils/toilServer/index autoapi/toil/utils/toilSshCluster/index autoapi/toil/utils/toilStats/index autoapi/toil/utils/toilStatus/index autoapi/toil/utils/toilUpdateEC2Instances/index autoapi/toil/wdl/index autoapi/toil/wdl/utils/index autoapi/toil/wdl/wdltoil/index autoapi/toil/bus/index autoapi/toil/common/index autoapi/toil/deferred/index autoapi/toil/exceptions/index autoapi/toil/job/index autoapi/toil/leader/index autoapi/toil/realtimeLogger/index autoapi/toil/resource/index autoapi/toil/serviceManager/index autoapi/toil/statsAndLogging/index autoapi/toil/toilState/index autoapi/toil/version/index autoapi/toil/worker/index } /<>/docs/gettingStarted/quickStart.rst:506: WARNING: "table row spanning" not supported done build succeeded, 3 warnings. The manual pages are in _build/man. make[2]: Leaving directory '/<>/docs' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS='HOME={home_dir} {interpreter} setup.py develop --user && PYTHONPATH={dir}/src:$PYTHONPATH PATH={home_dir}/.local/bin/:$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True {interpreter} -m pytest -n auto --dist loadscope -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/wdltoil_test.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py --ignore src/toil/test/lib/aws/test_iam.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest or test_cwl_toil_kill or testImportReadFileCompatibility or CleanWorkDirTest or DeferredFunctionTest or WdlToilTest or test_cactus_integration)" {dir}/src/toil/test' \ dh_auto_test I: pybuild base:311: HOME=/<>/.pybuild/cpython3_3.12_toil python3.12 setup.py develop --user && PYTHONPATH=/<>/src:$PYTHONPATH PATH=/<>/.pybuild/cpython3_3.12_toil/.local/bin/:$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.12 -m pytest -n auto --dist loadscope -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/wdltoil_test.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py --ignore src/toil/test/lib/aws/test_iam.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest or test_cwl_toil_kill or testImportReadFileCompatibility or CleanWorkDirTest or DeferredFunctionTest or WdlToilTest or test_cactus_integration)" /<>/src/toil/test running develop /usr/lib/python3/dist-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` and ``easy_install``. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://github.com/pypa/setuptools/issues/917 for details. ******************************************************************************** !! easy_install.initialize_options(self) /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running egg_info creating src/toil.egg-info writing src/toil.egg-info/PKG-INFO writing dependency_links to src/toil.egg-info/dependency_links.txt writing entry points to src/toil.egg-info/entry_points.txt writing requirements to src/toil.egg-info/requires.txt writing top-level names to src/toil.egg-info/top_level.txt writing manifest file 'src/toil.egg-info/SOURCES.txt' reading manifest file 'src/toil.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/toil.egg-info/SOURCES.txt' running build_ext Creating /<>/.pybuild/cpython3_3.12_toil/.local/lib/python3.12/site-packages/toil.egg-link (link to src) Adding toil 6.1.0 to easy-install.pth file Installing _toil_contained_executor script to /<>/.pybuild/cpython3_3.12_toil/.local/bin Installing _toil_mesos_executor script to /<>/.pybuild/cpython3_3.12_toil/.local/bin Installing _toil_worker script to /<>/.pybuild/cpython3_3.12_toil/.local/bin Installing cwltoil script to /<>/.pybuild/cpython3_3.12_toil/.local/bin Installing toil script to /<>/.pybuild/cpython3_3.12_toil/.local/bin Installing toil-cwl-runner script to /<>/.pybuild/cpython3_3.12_toil/.local/bin Installing toil-wdl-runner script to /<>/.pybuild/cpython3_3.12_toil/.local/bin Installing toil-wes-cwl-runner script to /<>/.pybuild/cpython3_3.12_toil/.local/bin Installed /<>/src Processing dependencies for toil==6.1.0 Searching for urllib3==2.0.7 Best match: urllib3 2.0.7 Adding urllib3 2.0.7 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for typing-extensions==4.12.1 Best match: typing-extensions 4.12.1 Adding typing-extensions 4.12.1 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for ruamel.yaml==0.18.6 Best match: ruamel.yaml 0.18.6 Adding ruamel.yaml 0.18.6 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for requests==2.31.0 Best match: requests 2.31.0 Adding requests 2.31.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for PyYAML==6.0.1 Best match: PyYAML 6.0.1 Adding PyYAML 6.0.1 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pytz==2024.1 Best match: pytz 2024.1 Adding pytz 2024.1 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for python-dateutil==2.9.0 Best match: python-dateutil 2.9.0 Adding python-dateutil 2.9.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for psutil==5.9.8 Best match: psutil 5.9.8 Adding psutil 5.9.8 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for enlighten==1.11.2 Best match: enlighten 1.11.2 Adding enlighten 1.11.2 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for docker==5.0.3 Best match: docker 5.0.3 Adding docker 5.0.3 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for dill==0.3.8 Best match: dill 0.3.8 Adding dill 0.3.8 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for ConfigArgParse==1.7 Best match: ConfigArgParse 1.7 Adding ConfigArgParse 1.7 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for Pypubsub==4.0.3 Best match: Pypubsub 4.0.3 Adding Pypubsub 4.0.3 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for ruamel.yaml.clib==0.2.8 Best match: ruamel.yaml.clib 0.2.8 Adding ruamel.yaml.clib 0.2.8 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for toil==6.1.0 ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /<> configfile: setup.cfg plugins: xdist-3.6.1 created: 4/4 workers 4 workers [515 items] scheduling tests via LoadScopeScheduling src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testBatchCreate src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testBatchCreate src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testBatchCreate [gw0] [ 0%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testBatchCreate [gw2] [ 0%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testBatchCreate src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testChildLoadingEquality src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testChildLoadingEquality [gw0] [ 0%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testChildLoadingEquality src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testCleanCache [gw2] [ 0%] SKIPPED 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src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testBatchCreate src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testChildLoadingEquality [gw3] [ 2%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testChildLoadingEquality src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testCleanCache [gw3] [ 3%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testCleanCache src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testConfigEquality [gw3] [ 3%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testConfigEquality src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionIdempotence [gw3] [ 3%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionIdempotence src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionOfCorruptedJobStore [gw3] [ 3%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionOfCorruptedJobStore src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testEmptyFileStoreIDIsReadable [gw3] [ 3%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testEmptyFileStoreIDIsReadable src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testFileDeletion [gw3] [ 4%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testFileDeletion src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testFileDeletion src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testGrowingAndShrinkingJob [gw2] [ 4%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionOfCorruptedJobStore src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testEmptyFileStoreIDIsReadable [gw2] [ 4%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testEmptyFileStoreIDIsReadable 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src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInlinedFiles src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobDeletions src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInitialState [gw0] [ 6%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInitialState src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInlinedFiles [gw3] [ 7%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobDeletions src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobLoadEquality [gw0] [ 7%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInlinedFiles src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobCreation src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobCreation [gw2] [ 7%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobCreation src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobDeletions [gw2] [ 7%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobDeletions [gw0] [ 7%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobCreation [gw3] [ 8%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobLoadEquality src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testLargeFile [gw3] [ 8%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testLargeFile src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobLoadEquality [gw2] [ 8%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobLoadEquality src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobDeletions [gw0] [ 8%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobDeletions src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobLoadEquality src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testLargeFile src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testMultipartUploads [gw3] [ 8%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testMultipartUploads src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPartialReadFromStream [gw2] [ 9%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testLargeFile src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultiThreadImportFile [gw3] [ 9%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPartialReadFromStream [gw2] [ 9%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultiThreadImportFile [gw0] [ 9%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobLoadEquality src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testLargeFile src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPerJobFiles src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultipartUploads [gw3] [ 9%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPerJobFiles [gw0] [ 10%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testLargeFile [gw2] [ 10%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultipartUploads src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultiThreadImportFile [gw0] [ 10%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultiThreadImportFile src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testOverlargeJob src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPersistantFilesToDelete [gw3] [ 10%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPersistantFilesToDelete src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteFileStreamTextMode [gw2] [ 10%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testOverlargeJob src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultipartUploads [gw0] [ 11%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultipartUploads src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPartialReadFromStream [gw3] [ 11%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteFileStreamTextMode src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testOverlargeJob src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteSharedFilesTextMode [gw2] [ 11%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPartialReadFromStream src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPerJobFiles [gw3] [ 11%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteSharedFilesTextMode [gw0] [ 11%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testOverlargeJob [gw2] [ 12%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPerJobFiles src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testSharedFiles src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPartialReadFromStream src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPersistantFilesToDelete [gw0] [ 12%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPartialReadFromStream src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPerJobFiles [gw2] [ 12%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPersistantFilesToDelete src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteFileStreamTextMode [gw0] [ 12%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPerJobFiles [gw2] [ 12%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteFileStreamTextMode src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPersistantFilesToDelete [gw0] [ 13%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPersistantFilesToDelete [gw3] [ 13%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testSharedFiles src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testStatsAndLogging [gw3] [ 13%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testStatsAndLogging src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testUpdateBehavior [gw3] [ 13%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testUpdateBehavior src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testWriteLogFiles src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteSharedFilesTextMode [gw2] [ 13%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteSharedFilesTextMode src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteFileStreamTextMode [gw0] [ 13%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteFileStreamTextMode src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteSharedFilesTextMode [gw3] [ 14%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testWriteLogFiles src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testZeroLengthFiles [gw0] [ 14%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteSharedFilesTextMode [gw2] [ 14%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation [gw3] [ 14%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testZeroLengthFiles src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSharedFiles [gw2] [ 14%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSharedFiles src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testStatsAndLogging src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation [gw0] [ 15%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSharedFiles [gw2] [ 15%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testStatsAndLogging src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testUpdateBehavior src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw0] [ 15%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSharedFiles src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testStatsAndLogging [gw2] [ 15%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testUpdateBehavior src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testWriteLogFiles [gw3] [ 15%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py [gw3] [ 16%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py [gw2] [ 16%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testWriteLogFiles src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testZeroLengthFiles [gw0] [ 16%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testStatsAndLogging src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testUpdateBehavior [gw0] [ 16%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testUpdateBehavior src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testWriteLogFiles [gw3] [ 16%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py [gw2] [ 17%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testZeroLengthFiles [gw0] [ 17%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testWriteLogFiles src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw3] [ 17%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py [gw2] [ 17%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testZeroLengthFiles src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py [gw0] [ 17%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testZeroLengthFiles src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw2] [ 18%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py [gw3] [ 18%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py [gw2] [ 18%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py [gw3] [ 18%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw0] [ 18%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw2] [ 19%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py [gw0] [ 19%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py [gw3] [ 19%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py [gw2] [ 19%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py [gw0] [ 19%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw3] [ 20%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py [gw2] [ 20%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw3] [ 20%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw0] [ 20%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py [gw2] [ 20%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw0] [ 20%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw3] [ 21%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py [gw2] [ 21%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py [gw0] [ 21%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw3] [ 21%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py [gw2] [ 21%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py [gw0] [ 22%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw3] [ 22%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py [gw0] [ 22%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py [gw2] [ 22%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py [gw3] [ 22%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py [gw0] [ 23%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean [gw2] [ 23%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw2] [ 23%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw0] [ 23%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py [gw3] [ 23%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py [gw2] [ 24%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py [gw0] [ 24%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_FORGO [gw3] [ 24%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_FORGO src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testAsyncWriteWithCaching [gw0] [ 24%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py [gw2] [ 24%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testAsyncWriteWithCaching [gw0] [ 25%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testAsyncWriteWithCaching src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionFailCase [gw2] [ 25%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionFailCase [gw0] [ 25%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testAsyncWriteWithCaching src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionFailCase src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionPartialEvict src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_None [gw0] [ 25%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionFailCase [gw2] [ 25%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionPartialEvict src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionPartialEvict [gw3] [ 26%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_None src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionTotalEvict [gw0] [ 26%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionPartialEvict [gw2] [ 26%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionTotalEvict src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionTotalEvict src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_RM [gw3] [ 26%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_RM src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_STOP src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testControlledFailedWorkerRetry [gw0] [ 26%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionTotalEvict src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testControlledFailedWorkerRetry [gw2] [ 26%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testControlledFailedWorkerRetry src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testDeleteLocalFile [gw0] [ 27%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testControlledFailedWorkerRetry [gw3] [ 27%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_STOP src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testDeleteLocalFile src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_FORGO [gw3] [ 27%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_FORGO src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_None [gw0] [ 27%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testDeleteLocalFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testExtremeCacheSetup [gw3] [ 27%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_None src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_RM [gw0] [ 28%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testExtremeCacheSetup src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreExportFile [gw3] [ 28%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_RM src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_STOP [gw0] [ 28%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreExportFile [gw3] [ 28%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_STOP src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreLogging src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_FORGO [gw0] [ 28%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreLogging [gw3] [ 29%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_FORGO src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_None src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreOperations [gw0] [ 29%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreOperations [gw3] [ 29%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_None src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_RM src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheHitGlobalFile [gw3] [ 29%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_RM [gw0] [ 29%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheHitGlobalFile src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_STOP src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheMissGlobalFile [gw3] [ 30%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_STOP src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_FORGO [gw0] [ 30%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheMissGlobalFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCachHitFileFromJobStore [gw3] [ 30%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_FORGO src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_None [gw0] [ 30%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCachHitFileFromJobStore src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile [gw3] [ 30%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_None src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_RM [gw0] [ 31%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile [gw3] [ 31%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_RM src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_STOP [gw0] [ 31%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode [gw3] [ 31%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_STOP src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_FORGO [gw0] [ 31%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode [gw3] [ 32%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_FORGO src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_None [gw3] [ 32%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_None src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_RM src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalImmutablyReadFile [gw3] [ 32%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_RM src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_STOP [gw0] [ 32%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalImmutablyReadFile [gw3] [ 32%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_STOP src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalMutablyReadFile [gw0] [ 33%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalMutablyReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizes src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_FORGO [gw3] [ 33%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_FORGO [gw0] [ 33%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizes src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizesWithBadWorker src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_None [gw3] [ 33%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_None [gw0] [ 33%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizesWithBadWorker src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testSimultaneousReadsUncachedStream src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_RM [gw3] [ 33%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_RM [gw0] [ 34%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testSimultaneousReadsUncachedStream src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_STOP src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testToilIsNotBroken [gw3] [ 34%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_STOP src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs [gw0] [ 34%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testToilIsNotBroken src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility [gw3] [ 34%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux [gw0] [ 34%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteLocalFileToJobStore [gw3] [ 35%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux_Stream [gw0] [ 35%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteLocalFileToJobStore [gw3] [ 35%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux_Stream src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteNonLocalFileToJobStore src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Stream [gw0] [ 35%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteNonLocalFileToJobStore src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions [gw3] [ 35%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Stream src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChain [gw0] [ 36%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions [gw3] [ 36%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChain src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChainErrorDetection src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testAsyncWriteWithCaching [gw3] [ 36%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChainErrorDetection [gw0] [ 36%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testAsyncWriteWithCaching src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionFailCase src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChain [gw0] [ 36%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionFailCase [gw3] [ 37%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChain src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionPartialEvict src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChainErrorDetection [gw0] [ 37%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionPartialEvict [gw3] [ 37%] SKIPPED src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChainErrorDetection src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionTotalEvict src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_many_all_exist [gw0] [ 37%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionTotalEvict src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testControlledFailedWorkerRetry [gw0] [ 37%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testControlledFailedWorkerRetry src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testDeleteLocalFile [gw0] [ 38%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testDeleteLocalFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testExtremeCacheSetup [gw0] [ 38%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testExtremeCacheSetup src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreExportFile [gw0] [ 38%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreExportFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreLogging [gw0] [ 38%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreLogging src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreOperations [gw0] [ 38%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreOperations src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheHitGlobalFile [gw0] [ 39%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheHitGlobalFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheMissGlobalFile [gw0] [ 39%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheMissGlobalFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCachHitFileFromJobStore [gw0] [ 39%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCachHitFileFromJobStore src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile [gw0] [ 39%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile [gw0] [ 39%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode [gw0] [ 40%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalImmutablyReadFile [gw0] [ 40%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalImmutablyReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalMutablyReadFile [gw0] [ 40%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalMutablyReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizes [gw0] [ 40%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizes src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizesWithBadWorker [gw0] [ 40%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizesWithBadWorker src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testSimultaneousReadsUncachedStream [gw0] [ 40%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testSimultaneousReadsUncachedStream src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken [gw0] [ 41%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility [gw0] [ 41%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteLocalFileToJobStore [gw0] [ 41%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteLocalFileToJobStore src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteNonLocalFileToJobStore [gw0] [ 41%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteNonLocalFileToJobStore src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions [gw0] [ 41%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions src/toil/test/utils/utilsTest.py::UtilsTest::testAWSProvisionerUtils [gw0] [ 42%] SKIPPED src/toil/test/utils/utilsTest.py::UtilsTest::testAWSProvisionerUtils src/toil/test/utils/utilsTest.py::UtilsTest::testGetPIDStatus [gw0] [ 42%] FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testGetPIDStatus src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedCWLWF [gw0] [ 42%] SKIPPED src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedCWLWF src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedToilWF [gw3] [ 42%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_many_all_exist src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_exists [gw0] [ 42%] FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedToilWF src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusSuccessfulCWLWF [gw0] [ 43%] SKIPPED src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusSuccessfulCWLWF src/toil/test/utils/utilsTest.py::UtilsTest::testMultipleJobsPerWorkerStats [gw0] [ 43%] SKIPPED src/toil/test/utils/utilsTest.py::UtilsTest::testMultipleJobsPerWorkerStats src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog [gw3] [ 43%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_exists [gw1] [ 43%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testBatchCreate src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_not_exists src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testChildLoadingEquality [gw3] [ 43%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_not_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_exists [gw1] [ 44%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testChildLoadingEquality src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testCleanCache [gw1] [ 44%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testCleanCache src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testConfigEquality [gw3] [ 44%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_not_exists [gw1] [ 44%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testConfigEquality src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionIdempotence [gw3] [ 44%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_not_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_some_exists [gw1] [ 45%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionIdempotence src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionOfCorruptedJobStore [gw1] [ 45%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionOfCorruptedJobStore src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testEmptyFileStoreIDIsReadable [gw3] [ 45%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_some_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_all_exist [gw1] [ 45%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testEmptyFileStoreIDIsReadable src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testFileDeletion [gw1] [ 45%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testFileDeletion src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testGrowingAndShrinkingJob [gw3] [ 46%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_all_exist src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_none_exist [gw1] [ 46%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testGrowingAndShrinkingJob src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testImportHttpFile [gw3] [ 46%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_none_exist src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_some_exist [gw3] [ 46%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_some_exist src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_exists [gw3] [ 46%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_not_exists [gw3] [ 46%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_not_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_all_exist [gw3] [ 47%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_all_exist src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_none_exist [gw3] [ 47%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_none_exist src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_some_exist [gw3] [ 47%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_some_exist src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_exists [gw3] [ 47%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_not_exists [gw3] [ 47%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_not_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_exists [gw3] [ 48%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_not_exists [gw3] [ 48%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_not_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_exists [gw3] [ 48%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_exists src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_not_exists [gw3] [ 48%] PASSED src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_not_exists src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testApplianceParser [gw3] [ 48%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testApplianceParser src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadGoogleRepo [gw3] [ 49%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadGoogleRepo src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepo [gw3] [ 49%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepo src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepoNTag [gw3] [ 49%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepoNTag src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayTag [gw3] [ 49%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayTag src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepo [gw3] [ 49%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepo src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepoBadTag [gw3] [ 50%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepoBadTag src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testGoogleRepo [gw3] [ 50%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testGoogleRepo src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testNonexistentRepo [gw3] [ 50%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testNonexistentRepo src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testOfficialUbuntuRepo [gw3] [ 50%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testOfficialUbuntuRepo src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testToilQuayRepo [gw3] [ 50%] SKIPPED src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testToilQuayRepo src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testBetaInertia [gw3] [ 51%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testBetaInertia src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMaxNodes [gw3] [ 51%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMaxNodes src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMinNodes [gw3] [ 51%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMinNodes src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testNoLaunchingIfDeltaAlreadyMet [gw3] [ 51%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testNoLaunchingIfDeltaAlreadyMet src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptibleDeficitIsSet [gw3] [ 51%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptibleDeficitIsSet src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptibleDeficitResponse [gw3] [ 52%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptibleDeficitResponse src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testRounding [gw3] [ 52%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testRounding src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::test_overhead_accounting_large [gw3] [ 52%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::test_overhead_accounting_large src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::test_overhead_accounting_observed [gw3] [ 52%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::test_overhead_accounting_observed src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::test_overhead_accounting_small [gw3] [ 52%] PASSED src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::test_overhead_accounting_small src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_and_cancel_workflows [gw3] [ 53%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_and_cancel_workflows src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_https_url [gw3] [ 53%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_https_url src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_inputs_zip [gw3] [ 53%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_inputs_zip src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_manifest_and_inputs_zip [gw3] [ 53%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_manifest_and_inputs_zip src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_manifest_zip [gw3] [ 53%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_manifest_zip src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_multi_file_zip [gw3] [ 53%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_multi_file_zip src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_no_params_zip [gw3] [ 54%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_no_params_zip src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_relative_url [gw3] [ 54%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_relative_url src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_relative_url_no_attachments_fails [gw3] [ 54%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_relative_url_no_attachments_fails src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_single_file_zip [gw3] [ 54%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerWorkflowTest::test_run_workflow_single_file_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_and_cancel_workflows [gw3] [ 54%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_and_cancel_workflows src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_https_url [gw3] [ 55%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_https_url src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_inputs_zip [gw3] [ 55%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_inputs_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_manifest_and_inputs_zip [gw3] [ 55%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_manifest_and_inputs_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_manifest_zip [gw3] [ 55%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_manifest_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_multi_file_zip [gw3] [ 55%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_multi_file_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_no_params_zip [gw3] [ 56%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_no_params_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_relative_url [gw3] [ 56%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_relative_url src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_relative_url_no_attachments_fails [gw3] [ 56%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_relative_url_no_attachments_fails src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_single_file_zip [gw3] [ 56%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryWorkflowTest::test_run_workflow_single_file_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_and_cancel_workflows [gw3] [ 56%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_and_cancel_workflows src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_https_url [gw3] [ 57%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_https_url src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_inputs_zip [gw3] [ 57%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_inputs_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_manifest_and_inputs_zip [gw3] [ 57%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_manifest_and_inputs_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_manifest_zip [gw3] [ 57%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_manifest_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_multi_file_zip [gw3] [ 57%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_multi_file_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_no_params_zip [gw3] [ 58%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_no_params_zip src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_relative_url [gw3] [ 58%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_relative_url src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_relative_url_no_attachments_fails [gw3] [ 58%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_relative_url_no_attachments_fails src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_single_file_zip [gw3] [ 58%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerCeleryS3StateWorkflowTest::test_run_workflow_single_file_zip src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testAddingInitialNode [gw3] [ 58%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testAddingInitialNode src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testHighTargetTime [gw3] [ 59%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testHighTargetTime src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testJobTooLargeForAllNodes [gw3] [ 59%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testJobTooLargeForAllNodes src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLongRunningJobs [gw1] [ 59%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testImportHttpFile src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testInitialState [gw3] [ 59%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLongRunningJobs src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLowTargetTime [gw3] [ 59%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLowTargetTime src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPackingOneShape [gw3] [ 60%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPackingOneShape src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPathologicalCase [gw3] [ 60%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPathologicalCase src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testSorting [gw3] [ 60%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testSorting src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testZeroResourceJobs [gw3] [ 60%] PASSED src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testZeroResourceJobs src/toil/test/src/jobTest.py::JobTest::testDAGConsistency [gw2] [ 60%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testDeleteLocalFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testExtremeCacheSetup [gw2] [ 60%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testExtremeCacheSetup src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreExportFile [gw2] [ 61%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreExportFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreLogging [gw2] [ 61%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreLogging src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreOperations [gw2] [ 61%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreOperations src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheHitGlobalFile [gw2] [ 61%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheHitGlobalFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheMissGlobalFile [gw2] [ 61%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheMissGlobalFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCachHitFileFromJobStore [gw2] [ 62%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCachHitFileFromJobStore src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile [gw0] [ 62%] PASSED src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog src/toil/test/utils/utilsTest.py::UtilsTest::testRestartAttribute [gw0] [ 62%] FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testRestartAttribute src/toil/test/utils/utilsTest.py::UtilsTest::testUnicodeSupport [gw3] [ 62%] PASSED src/toil/test/src/jobTest.py::JobTest::testDAGConsistency src/toil/test/src/jobTest.py::JobTest::testDeadlockDetection [gw2] [ 62%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile [gw0] [ 63%] PASSED src/toil/test/utils/utilsTest.py::UtilsTest::testUnicodeSupport src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsSort [gw0] [ 63%] SKIPPED src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsSort src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsStatsSort [gw0] [ 63%] SKIPPED src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsStatsSort src/toil/test/utils/utilsTest.py::UtilsTest::test_config_functionality [gw0] [ 63%] PASSED src/toil/test/utils/utilsTest.py::UtilsTest::test_config_functionality src/toil/test/src/miscTests.py::MiscTests::testGetSizeOfDirectoryWorks [gw0] [ 63%] SKIPPED src/toil/test/src/miscTests.py::MiscTests::testGetSizeOfDirectoryWorks src/toil/test/src/miscTests.py::MiscTests::testIDStability [gw0] [ 64%] PASSED src/toil/test/src/miscTests.py::MiscTests::testIDStability src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_error [gw0] [ 64%] PASSED src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_error src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_ok [gw0] [ 64%] PASSED src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_ok src/toil/test/src/miscTests.py::MiscTests::test_atomic_install [gw0] [ 64%] PASSED src/toil/test/src/miscTests.py::MiscTests::test_atomic_install src/toil/test/src/miscTests.py::MiscTests::test_atomic_install_dev [gw0] [ 64%] PASSED src/toil/test/src/miscTests.py::MiscTests::test_atomic_install_dev src/toil/test/src/miscTests.py::MiscTests::test_call_command_err [gw0] [ 65%] PASSED src/toil/test/src/miscTests.py::MiscTests::test_call_command_err src/toil/test/src/miscTests.py::MiscTests::test_call_command_ok [gw0] [ 65%] PASSED src/toil/test/src/miscTests.py::MiscTests::test_call_command_ok src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreLogging [gw0] [ 65%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreLogging src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreOperations [gw0] [ 65%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreOperations src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode [gw3] [ 65%] PASSED src/toil/test/src/jobTest.py::JobTest::testDeadlockDetection src/toil/test/src/jobTest.py::JobTest::testEvaluatingRandomDAG [gw3] [ 66%] SKIPPED src/toil/test/src/jobTest.py::JobTest::testEvaluatingRandomDAG src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexNonRootCase [gw3] [ 66%] SKIPPED src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexNonRootCase src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexRootCase [gw3] [ 66%] SKIPPED src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexRootCase src/toil/test/src/jobTest.py::JobTest::testSiblingDAGConsistency [gw3] [ 66%] SKIPPED src/toil/test/src/jobTest.py::JobTest::testSiblingDAGConsistency src/toil/test/src/jobTest.py::JobTest::testStatic [gw3] [ 66%] SKIPPED src/toil/test/src/jobTest.py::JobTest::testStatic src/toil/test/src/jobTest.py::JobTest::testStatic2 [gw2] [ 66%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode [gw3] [ 67%] PASSED src/toil/test/src/jobTest.py::JobTest::testStatic2 src/toil/test/src/jobTest.py::JobTest::testTrivialDAGConsistency [gw3] [ 67%] SKIPPED src/toil/test/src/jobTest.py::JobTest::testTrivialDAGConsistency src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreLogging [gw3] [ 67%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreLogging src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreOperations [gw3] [ 67%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreOperations src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode [gw3] [ 67%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testToilIsNotBroken [gw3] [ 68%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testToilIsNotBroken src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility [gw3] [ 68%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions [gw3] [ 68%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreLogging [gw3] [ 68%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreLogging src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreOperations [gw3] [ 68%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreOperations src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode [gw3] [ 69%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken [gw3] [ 69%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility [gw3] [ 69%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions [gw3] [ 69%] SKIPPED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions src/toil/test/src/jobServiceTest.py::JobServiceTest::testService [gw3] [ 69%] SKIPPED src/toil/test/src/jobServiceTest.py::JobServiceTest::testService src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceDeadlock [gw3] [ 70%] SKIPPED src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceDeadlock src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceParallelRecursive [gw3] [ 70%] SKIPPED src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceParallelRecursive src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceRecursive [gw3] [ 70%] SKIPPED src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceRecursive src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceSerialization [gw3] [ 70%] SKIPPED src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceSerialization src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceWithCheckpoints [gw3] [ 70%] SKIPPED src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceWithCheckpoints src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testService [gw3] [ 71%] SKIPPED src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testService src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceDeadlock [gw3] [ 71%] SKIPPED src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceDeadlock src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceParallelRecursive [gw3] [ 71%] SKIPPED src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceParallelRecursive src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceRecursive [gw3] [ 71%] SKIPPED src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceRecursive src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceSerialization [gw3] [ 71%] SKIPPED src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceSerialization src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceWithCheckpoints [gw3] [ 72%] SKIPPED src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceWithCheckpoints src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_build_tag [gw3] [ 72%] PASSED src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_build_tag src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_build_tag_with_tags [gw3] [ 72%] PASSED src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_build_tag_with_tags src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_empty_aws_tags [gw3] [ 72%] PASSED src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_empty_aws_tags src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_incorrect_json_emoji [gw3] [ 72%] PASSED src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_incorrect_json_emoji src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_incorrect_json_object [gw3] [ 73%] PASSED src/toil/test/lib/aws/test_utils.py::TagGenerationTest::test_incorrect_json_object src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithConcurrentEncapsulation [gw3] [ 73%] SKIPPED src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithConcurrentEncapsulation src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithFailureAndEncapsulation [gw3] [ 73%] SKIPPED src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithFailureAndEncapsulation src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testRestart [gw3] [ 73%] SKIPPED src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testRestart src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testSplitRootPackages [gw3] [ 73%] SKIPPED src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testSplitRootPackages src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testUserTypesInJobFunctionArgs [gw3] [ 73%] SKIPPED src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testUserTypesInJobFunctionArgs src/toil/test/src/regularLogTest.py::RegularLogTest::testLogToMaster [gw3] [ 74%] SKIPPED src/toil/test/src/regularLogTest.py::RegularLogTest::testLogToMaster src/toil/test/src/regularLogTest.py::RegularLogTest::testMultipleLogToMaster [gw3] [ 74%] SKIPPED src/toil/test/src/regularLogTest.py::RegularLogTest::testMultipleLogToMaster src/toil/test/src/regularLogTest.py::RegularLogTest::testRegularLog [gw0] [ 74%] PASSED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testToilIsNotBroken [gw2] [ 74%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalImmutablyReadFile [gw2] [ 74%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalImmutablyReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalMutablyReadFile [gw2] [ 75%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalMutablyReadFile src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizes [gw2] [ 75%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizes src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizesWithBadWorker [gw2] [ 75%] SKIPPED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizesWithBadWorker src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testSimultaneousReadsUncachedStream [gw3] [ 75%] PASSED src/toil/test/src/regularLogTest.py::RegularLogTest::testRegularLog src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteGzipLogs [gw3] [ 75%] SKIPPED src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteGzipLogs src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteLogs [gw3] [ 76%] PASSED src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteLogs src/toil/test/src/resourceTest.py::ResourceTest::testBuiltIn [gw3] [ 76%] PASSED src/toil/test/src/resourceTest.py::ResourceTest::testBuiltIn src/toil/test/src/resourceTest.py::ResourceTest::testNonPyStandAlone [gw3] [ 76%] PASSED src/toil/test/src/resourceTest.py::ResourceTest::testNonPyStandAlone src/toil/test/src/resourceTest.py::ResourceTest::testPackage [gw3] [ 76%] PASSED src/toil/test/src/resourceTest.py::ResourceTest::testPackage src/toil/test/src/resourceTest.py::ResourceTest::testStandAlone [gw3] [ 76%] PASSED src/toil/test/src/resourceTest.py::ResourceTest::testStandAlone src/toil/test/src/resourceTest.py::ResourceTest::testStandAloneInPackage [gw3] [ 77%] PASSED src/toil/test/src/resourceTest.py::ResourceTest::testStandAloneInPackage src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testCachingFileStore [gw0] [ 77%] PASSED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testToilIsNotBroken src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility [gw3] [ 77%] PASSED src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testCachingFileStore src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStore [gw0] [ 77%] PASSED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions [gw1] [ 77%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testInitialState src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobCreation [gw3] [ 78%] PASSED src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStore src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStoreWithBadWorker [gw3] [ 78%] SKIPPED src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStoreWithBadWorker src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testNonCachingFileStore [gw1] [ 78%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobCreation src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobDeletions [gw3] [ 78%] PASSED src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testNonCachingFileStore src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClass [gw3] [ 78%] SKIPPED src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClass src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClassFromMain [gw3] [ 79%] PASSED src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClassFromMain src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunction [gw0] [ 79%] PASSED src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions src/toil/test/src/miscTests.py::TestPanic::test_nested_panic [gw0] [ 79%] PASSED src/toil/test/src/miscTests.py::TestPanic::test_nested_panic src/toil/test/src/miscTests.py::TestPanic::test_panic [gw0] [ 79%] PASSED src/toil/test/src/miscTests.py::TestPanic::test_panic src/toil/test/src/miscTests.py::TestPanic::test_panic_by_hand [gw0] [ 79%] PASSED src/toil/test/src/miscTests.py::TestPanic::test_panic_by_hand src/toil/test/src/miscTests.py::TestPanic::test_panic_with_secondary [gw0] [ 80%] PASSED src/toil/test/src/miscTests.py::TestPanic::test_panic_with_secondary src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScaling [gw0] [ 80%] SKIPPED src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScaling src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingMultipleNodeTypes [gw0] [ 80%] SKIPPED src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingMultipleNodeTypes src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingWithPreemptibleJobs [gw0] [ 80%] SKIPPED src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingWithPreemptibleJobs src/toil/test/server/serverTest.py::ToilWESServerBenchTest::test_get_service_info [gw0] [ 80%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerBenchTest::test_get_service_info src/toil/test/server/serverTest.py::ToilWESServerBenchTest::test_health [gw0] [ 80%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerBenchTest::test_health src/toil/test/server/serverTest.py::ToilWESServerBenchTest::test_home [gw0] [ 81%] SKIPPED src/toil/test/server/serverTest.py::ToilWESServerBenchTest::test_home src/toil/test/src/busTest.py::MessageBusTest::test_cross_thread_messaging [gw0] [ 81%] PASSED src/toil/test/src/busTest.py::MessageBusTest::test_cross_thread_messaging src/toil/test/src/busTest.py::MessageBusTest::test_enum_ints_in_file [gw0] [ 81%] PASSED src/toil/test/src/busTest.py::MessageBusTest::test_enum_ints_in_file src/toil/test/src/busTest.py::MessageBusTest::test_restart_without_bus_path [gw3] [ 81%] PASSED src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunction src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunctionFromMain [gw3] [ 81%] PASSED src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunctionFromMain src/toil/test/lib/test_conversions.py::ConversionTest::test_convert [gw3] [ 82%] PASSED src/toil/test/lib/test_conversions.py::ConversionTest::test_convert src/toil/test/lib/test_conversions.py::ConversionTest::test_hms_duration_to_seconds [gw3] [ 82%] PASSED src/toil/test/lib/test_conversions.py::ConversionTest::test_hms_duration_to_seconds src/toil/test/lib/test_conversions.py::ConversionTest::test_human2bytes [gw3] [ 82%] PASSED src/toil/test/lib/test_conversions.py::ConversionTest::test_human2bytes src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_basic_import_export [gw3] [ 82%] PASSED src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_basic_import_export src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_false [gw3] [ 82%] PASSED src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_false src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_true [gw3] [ 83%] SKIPPED src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_true src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testContextManger [gw3] [ 83%] SKIPPED src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testContextManger src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testExportAfterFailedExport [gw3] [ 83%] SKIPPED src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testExportAfterFailedExport src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testNoContextManger [gw3] [ 83%] SKIPPED src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testNoContextManger src/toil/test/__init__.py::toil.test.make_tests [gw3] [ 83%] PASSED src/toil/test/__init__.py::toil.test.make_tests src/toil/test/__init__.py::toil.test.timeLimit [gw3] [ 84%] PASSED src/toil/test/__init__.py::toil.test.timeLimit src/toil/test/options/options.py::OptionsTest::test_caching_option_priority [gw3] [ 84%] PASSED src/toil/test/options/options.py::OptionsTest::test_caching_option_priority src/toil/test/options/options.py::OptionsTest::test_default_caching_slurm [gw3] [ 84%] PASSED src/toil/test/options/options.py::OptionsTest::test_default_caching_slurm src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testAutoScale [gw3] [ 84%] SKIPPED src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testAutoScale src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testSpotAutoScale [gw3] [ 84%] SKIPPED src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testSpotAutoScale src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testAutoScale [gw3] [ 85%] SKIPPED src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testAutoScale src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testSpotAutoScale [gw3] [ 85%] SKIPPED src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testSpotAutoScale src/toil/test/server/serverTest.py::AWSStateStoreTest::test_state_store [gw3] [ 85%] SKIPPED src/toil/test/server/serverTest.py::AWSStateStoreTest::test_state_store src/toil/test/server/serverTest.py::AWSStateStoreTest::test_state_store_paths [gw3] [ 85%] SKIPPED src/toil/test/server/serverTest.py::AWSStateStoreTest::test_state_store_paths src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescription [gw3] [ 85%] PASSED src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescription src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescriptionSequencing [gw3] [ 86%] PASSED src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescriptionSequencing src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testAddChildEncapsulate [gw3] [ 86%] PASSED src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testAddChildEncapsulate src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testEncapsulation [gw0] [ 86%] PASSED src/toil/test/src/busTest.py::MessageBusTest::test_restart_without_bus_path src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointNotRetried [gw3] [ 86%] PASSED src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testEncapsulation src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnFailedParent [gw3] [ 86%] SKIPPED src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnFailedParent src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnKilledParent [gw3] [ 86%] SKIPPED src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnKilledParent src/toil/test/src/resumabilityTest.py::ResumabilityTest::test [gw3] [ 87%] SKIPPED src/toil/test/src/resumabilityTest.py::ResumabilityTest::test src/toil/test/src/resumabilityTest.py::ResumabilityTest::test_chaining [gw0] [ 87%] PASSED src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointNotRetried src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointRetriedOnce [gw0] [ 87%] SKIPPED src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointRetriedOnce src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointedRestartSucceeds [gw0] [ 87%] SKIPPED src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointedRestartSucceeds src/toil/test/utils/toilDebugTest.py::testJobStoreContents [gw0] [ 87%] SKIPPED src/toil/test/utils/toilDebugTest.py::testJobStoreContents src/toil/test/utils/toilDebugTest.py::testFetchJobStoreFiles [gw0] [ 88%] FAILED src/toil/test/utils/toilDebugTest.py::testFetchJobStoreFiles src/toil/test/utils/toilDebugTest.py::DebugJobTest::test_print_job_info [gw0] [ 88%] FAILED src/toil/test/utils/toilDebugTest.py::DebugJobTest::test_print_job_info src/toil/test/utils/toilDebugTest.py::DebugJobTest::test_run_job [gw0] [ 88%] FAILED src/toil/test/utils/toilDebugTest.py::DebugJobTest::test_run_job src/toil/test/batchSystems/test_lsf_helper.py::LSFHelperTest::test_parse_mem_and_cmd_from_output [gw0] [ 88%] PASSED src/toil/test/batchSystems/test_lsf_helper.py::LSFHelperTest::test_parse_mem_and_cmd_from_output src/toil/test/jobStores/jobStoreTest.py::InvalidAWSJobStoreTest::testInvalidJobStoreName [gw0] [ 88%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::InvalidAWSJobStoreTest::testInvalidJobStoreName src/toil/test/lib/test_misc.py::UserNameAvailableTest::test_get_user_name [gw0] [ 89%] PASSED src/toil/test/lib/test_misc.py::UserNameAvailableTest::test_get_user_name src/toil/test/lib/test_misc.py::UserNameUnvailableTest::test_get_user_name [gw0] [ 89%] PASSED src/toil/test/lib/test_misc.py::UserNameUnvailableTest::test_get_user_name src/toil/test/lib/test_misc.py::UserNameVeryBrokenTest::test_get_user_name [gw0] [ 89%] PASSED src/toil/test/lib/test_misc.py::UserNameVeryBrokenTest::test_get_user_name src/toil/test/mesos/MesosDataStructuresTest.py::DataStructuresTest::testJobQueue [gw0] [ 89%] PASSED src/toil/test/mesos/MesosDataStructuresTest.py::DataStructuresTest::testJobQueue src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTestMultipleNodeTypes::testAutoScale [gw0] [ 89%] SKIPPED src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTestMultipleNodeTypes::testAutoScale src/toil/test/provisioners/gceProvisionerTest.py::GCERestartTest::testAutoScaledCluster [gw0] [ 90%] SKIPPED src/toil/test/provisioners/gceProvisionerTest.py::GCERestartTest::testAutoScaledCluster src/toil/test/provisioners/provisionerTest.py::ProvisionerTest::test_node_type_parsing [gw0] [ 90%] PASSED src/toil/test/provisioners/provisionerTest.py::ProvisionerTest::test_node_type_parsing src/toil/test/server/serverTest.py::ToilServerUtilsTest::test_workflow_canceling_recovery [gw0] [ 90%] SKIPPED src/toil/test/server/serverTest.py::ToilServerUtilsTest::test_workflow_canceling_recovery src/toil/test/server/serverTest.py::FileStateStoreTest::test_state_store [gw0] [ 90%] SKIPPED src/toil/test/server/serverTest.py::FileStateStoreTest::test_state_store src/toil/test/server/serverTest.py::FileStateStoreURLTest::test_state_store [gw0] [ 90%] SKIPPED src/toil/test/server/serverTest.py::FileStateStoreURLTest::test_state_store src/toil/test/src/helloWorldTest.py::HelloWorldTest::testHelloWorld [gw3] [ 91%] PASSED src/toil/test/src/resumabilityTest.py::ResumabilityTest::test_chaining src/toil/test/src/threadingTest.py::ThreadingTest::testGlobalMutexOrdering [gw0] [ 91%] PASSED src/toil/test/src/helloWorldTest.py::HelloWorldTest::testHelloWorld src/toil/test/src/promisesTest.py::CachedUnpicklingJobStoreTest::test [gw3] [ 91%] PASSED src/toil/test/src/threadingTest.py::ThreadingTest::testGlobalMutexOrdering src/toil/test/src/threadingTest.py::ThreadingTest::testLastProcessStanding [gw0] [ 91%] PASSED src/toil/test/src/promisesTest.py::CachedUnpicklingJobStoreTest::test src/toil/test/src/promisesTest.py::ChainedIndexedPromisesTest::test [gw3] [ 91%] PASSED src/toil/test/src/threadingTest.py::ThreadingTest::testLastProcessStanding src/toil/test/src/promisesTest.py::PathIndexingPromiseTest::test [gw0] [ 92%] PASSED src/toil/test/src/promisesTest.py::ChainedIndexedPromisesTest::test src/toil/test/src/realtimeLoggerTest.py::RealtimeLoggerTest::testRealtimeLogger [gw3] [ 92%] PASSED src/toil/test/src/promisesTest.py::PathIndexingPromiseTest::test src/toil/test/src/systemTest.py::SystemTest::testAtomicityOfNonEmptyDirectoryRenames [gw3] [ 92%] PASSED src/toil/test/src/systemTest.py::SystemTest::testAtomicityOfNonEmptyDirectoryRenames [gw0] [ 92%] PASSED src/toil/test/src/realtimeLoggerTest.py::RealtimeLoggerTest::testRealtimeLogger src/toil/test/src/workerTest.py::WorkerTests::testNextChainable [gw0] [ 92%] PASSED src/toil/test/src/workerTest.py::WorkerTests::testNextChainable [gw1] [ 93%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobDeletions src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobLoadEquality [gw1] [ 93%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobLoadEquality src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testLargeFile [gw1] [ 93%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testLargeFile src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testMultipartUploads [gw1] [ 93%] SKIPPED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testMultipartUploads src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPartialReadFromStream [gw1] [ 93%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPartialReadFromStream src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPerJobFiles [gw1] [ 93%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPerJobFiles src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPersistantFilesToDelete [gw1] [ 94%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPersistantFilesToDelete src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPreserveFileName [gw1] [ 94%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPreserveFileName src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteFileStreamTextMode [gw1] [ 94%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteFileStreamTextMode src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteSharedFilesTextMode [gw1] [ 94%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteSharedFilesTextMode src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testSharedFiles [gw1] [ 94%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testSharedFiles src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testStatsAndLogging [gw1] [ 95%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testStatsAndLogging src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testUpdateBehavior [gw1] [ 95%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testUpdateBehavior src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testWriteLogFiles [gw1] [ 95%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testWriteLogFiles src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testZeroLengthFiles [gw1] [ 95%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testZeroLengthFiles src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_file_link_imports [gw1] [ 95%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_file_link_imports src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_does_not_leak_symlinks [gw1] [ 96%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_does_not_leak_symlinks src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_init_preserves_symlink_path [gw1] [ 96%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_init_preserves_symlink_path src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw1] [ 96%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py [gw1] [ 96%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py [gw1] [ 96%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py [gw1] [ 97%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py [gw1] [ 97%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw1] [ 97%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py [gw1] [ 97%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py [gw1] [ 97%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py [gw1] [ 98%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py [gw1] [ 98%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py [gw1] [ 98%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py [gw1] [ 98%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero <- src/toil/test/__init__.py src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py [gw1] [ 98%] PASSED src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest <- src/toil/test/__init__.py [gw2] [ 99%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testSimultaneousReadsUncachedStream src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testToilIsNotBroken [gw2] [ 99%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testToilIsNotBroken src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility [gw2] [ 99%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteLocalFileToJobStore [gw2] [ 99%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteLocalFileToJobStore src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteNonLocalFileToJobStore [gw2] [ 99%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteNonLocalFileToJobStore src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions [gw2] [100%] PASSED src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions ==================================== ERRORS ==================================== _______ ERROR collecting src/toil/test/cactus/test_cactus_integration.py _______ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' _______ ERROR collecting src/toil/test/cactus/test_cactus_integration.py _______ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/cactus/test_cactus_integration.py", line 14, in __init__ super().__init__(methodName=methodName) File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' _______ ERROR collecting src/toil/test/cactus/test_cactus_integration.py _______ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' _______ ERROR collecting src/toil/test/cactus/test_cactus_integration.py _______ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/cactus/test_cactus_integration.py", line 14, in __init__ super().__init__(methodName=methodName) File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' _______ ERROR collecting src/toil/test/cactus/test_cactus_integration.py _______ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' _______ ERROR collecting src/toil/test/cactus/test_cactus_integration.py _______ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/cactus/test_cactus_integration.py", line 14, in __init__ super().__init__(methodName=methodName) File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' _______ ERROR collecting src/toil/test/cactus/test_cactus_integration.py _______ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' _______ ERROR collecting src/toil/test/cactus/test_cactus_integration.py _______ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/cactus/test_cactus_integration.py", line 14, in __init__ super().__init__(methodName=methodName) File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' __________ ERROR collecting src/toil/test/provisioners/clusterTest.py __________ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' __________ ERROR collecting src/toil/test/provisioners/clusterTest.py __________ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' __________ ERROR collecting src/toil/test/provisioners/clusterTest.py __________ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' __________ ERROR collecting src/toil/test/provisioners/clusterTest.py __________ Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/provisioners/clusterTest.py", line 34, in __init__ self.keyName = os.getenv('TOIL_AWS_KEYNAME').strip() or 'id_rsa' ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'strip' _____________ ERROR collecting src/toil/test/utils/toilKillTest.py _____________ Traceback (most recent call last): File "/<>/src/toil/jobStores/utils.py", line 365, in generate_locator from toil.jobStores.aws.jobStore import AWSJobStore # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/jobStores/aws/jobStore.py", line 29, in import boto.s3.connection ModuleNotFoundError: No module named 'boto' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/utils/toilKillTest.py", line 96, in __init__ self.job_store = generate_locator("aws", decoration="testkill") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/jobStores/utils.py", line 387, in generate_locator raise JobStoreUnavailableException(f"libraries for {job_store_type} job store are not installed") toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store are not installed _____________ ERROR collecting src/toil/test/utils/toilKillTest.py _____________ Traceback (most recent call last): File "/<>/src/toil/jobStores/utils.py", line 365, in generate_locator from toil.jobStores.aws.jobStore import AWSJobStore # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/jobStores/aws/jobStore.py", line 29, in import boto.s3.connection ModuleNotFoundError: No module named 'boto' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/utils/toilKillTest.py", line 96, in __init__ self.job_store = generate_locator("aws", decoration="testkill") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/jobStores/utils.py", line 387, in generate_locator raise JobStoreUnavailableException(f"libraries for {job_store_type} job store are not installed") toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store are not installed _____________ ERROR collecting src/toil/test/utils/toilKillTest.py _____________ Traceback (most recent call last): File "/<>/src/toil/jobStores/utils.py", line 365, in generate_locator from toil.jobStores.aws.jobStore import AWSJobStore # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/jobStores/aws/jobStore.py", line 29, in import boto.s3.connection ModuleNotFoundError: No module named 'boto' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/utils/toilKillTest.py", line 96, in __init__ self.job_store = generate_locator("aws", decoration="testkill") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/jobStores/utils.py", line 387, in generate_locator raise JobStoreUnavailableException(f"libraries for {job_store_type} job store are not installed") toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store are not installed _____________ ERROR collecting src/toil/test/utils/toilKillTest.py _____________ Traceback (most recent call last): File "/<>/src/toil/jobStores/utils.py", line 365, in generate_locator from toil.jobStores.aws.jobStore import AWSJobStore # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/jobStores/aws/jobStore.py", line 29, in import boto.s3.connection ModuleNotFoundError: No module named 'boto' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389, in collect return list(collector.collect()) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 90, in collect self.session._fixturemanager.parsefactories(self.newinstance(), self.nodeid) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 75, in newinstance return self.obj("runTest") ^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/utils/toilKillTest.py", line 96, in __init__ self.job_store = generate_locator("aws", decoration="testkill") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/jobStores/utils.py", line 387, in generate_locator raise JobStoreUnavailableException(f"libraries for {job_store_type} job store are not installed") toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store are not installed =================================== FAILURES =================================== __________________________ UtilsTest.testGetPIDStatus __________________________ [gw0] linux -- Python 3.12.3 /usr/bin/python3.12 Traceback (most recent call last): File "/usr/lib/python3.12/unittest/case.py", line 58, in testPartExecutor yield File "/usr/lib/python3.12/unittest/case.py", line 634, in run self._callTestMethod(testMethod) File "/usr/lib/python3.12/unittest/case.py", line 589, in _callTestMethod if method() is not None: ^^^^^^^^ File "/<>/src/toil/test/utils/utilsTest.py", line 316, in testGetPIDStatus wf = subprocess.Popen(self.sort_workflow_cmd) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 1026, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.12/subprocess.py", line 1955, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' ---------------------------- Captured stdout setup ----------------------------- [TEST] toil.test.utils.utilsTest.UtilsTest:testGetPIDStatus (Jun 08 2024 12:00:49:705468 PDT) _____________________ UtilsTest.testGetStatusFailedToilWF ______________________ [gw0] linux -- Python 3.12.3 /usr/bin/python3.12 Traceback (most recent call last): File "/usr/lib/python3.12/unittest/case.py", line 58, in testPartExecutor yield File "/usr/lib/python3.12/unittest/case.py", line 634, in run self._callTestMethod(testMethod) File "/usr/lib/python3.12/unittest/case.py", line 589, in _callTestMethod if method() is not None: ^^^^^^^^ File "/<>/src/toil/test/utils/utilsTest.py", line 333, in testGetStatusFailedToilWF wf = subprocess.Popen(self.sort_workflow_cmd + ['--badWorker=1']) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 1026, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.12/subprocess.py", line 1955, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' ---------------------------- Captured stdout setup ----------------------------- [TEST] toil.test.utils.utilsTest.UtilsTest:testGetStatusFailedToilWF (Jun 08 2024 12:00:49:715012 PDT) ________________________ UtilsTest.testRestartAttribute ________________________ [gw0] linux -- Python 3.12.3 /usr/bin/python3.12 Traceback (most recent call last): File "/usr/lib/python3.12/unittest/case.py", line 58, in testPartExecutor yield File "/usr/lib/python3.12/unittest/case.py", line 634, in run self._callTestMethod(testMethod) File "/usr/lib/python3.12/unittest/case.py", line 589, in _callTestMethod if method() is not None: ^^^^^^^^ File "/<>/src/toil/test/utils/utilsTest.py", line 386, in testRestartAttribute subprocess.run(cmd) File "/usr/lib/python3.12/subprocess.py", line 548, in run with Popen(*popenargs, **kwargs) as process: ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 1026, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.12/subprocess.py", line 1955, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' ---------------------------- Captured stdout setup ----------------------------- [TEST] toil.test.utils.utilsTest.UtilsTest:testRestartAttribute (Jun 08 2024 12:00:55:914234 PDT) ____________________________ testFetchJobStoreFiles ____________________________ [gw0] linux -- Python 3.12.3 /usr/bin/python3.12 Traceback (most recent call last): File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341, in from_call result: Optional[TResult] = func() ^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241, in lambda: runtest_hook(item=item, **kwds), when=when, reraise=reraise ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 139, in _multicall raise exception.with_traceback(exception.__traceback__) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 122, in _multicall teardown.throw(exception) # type: ignore[union-attr] ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/threadexception.py", line 87, in pytest_runtest_call yield from thread_exception_runtest_hook() File "/usr/lib/python3/dist-packages/_pytest/threadexception.py", line 63, in thread_exception_runtest_hook yield File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 122, in _multicall teardown.throw(exception) # type: ignore[union-attr] ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/unraisableexception.py", line 90, in pytest_runtest_call yield from unraisable_exception_runtest_hook() File "/usr/lib/python3/dist-packages/_pytest/unraisableexception.py", line 65, in unraisable_exception_runtest_hook yield File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 122, in _multicall teardown.throw(exception) # type: ignore[union-attr] ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/logging.py", line 850, in pytest_runtest_call yield from self._runtest_for(item, "call") File "/usr/lib/python3/dist-packages/_pytest/logging.py", line 833, in _runtest_for yield File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 122, in _multicall teardown.throw(exception) # type: ignore[union-attr] ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/capture.py", line 878, in pytest_runtest_call return (yield) ^^^^^ File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 122, in _multicall teardown.throw(exception) # type: ignore[union-attr] ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/skipping.py", line 257, in pytest_runtest_call return (yield) ^^^^^ File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 183, in pytest_runtest_call raise e File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 173, in pytest_runtest_call item.runtest() File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1632, in runtest self.ihook.pytest_pyfunc_call(pyfuncitem=self) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 139, in _multicall raise exception.with_traceback(exception.__traceback__) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/_pytest/python.py", line 162, in pytest_pyfunc_call result = testfunction(**testargs) ^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/utils/toilDebugTest.py", line 118, in testFetchJobStoreFiles job_store_dir = workflow_debug_jobstore() ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/utils/toilDebugTest.py", line 32, in workflow_debug_jobstore subprocess.check_call( File "/usr/lib/python3.12/subprocess.py", line 408, in check_call retcode = call(*popenargs, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 389, in call with Popen(*popenargs, **kwargs) as p: ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 1026, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.12/subprocess.py", line 1955, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' _______________________ DebugJobTest.test_print_job_info _______________________ [gw0] linux -- Python 3.12.3 /usr/bin/python3.12 Traceback (most recent call last): File "/usr/lib/python3.12/unittest/case.py", line 58, in testPartExecutor yield File "/usr/lib/python3.12/unittest/case.py", line 634, in run self._callTestMethod(testMethod) File "/usr/lib/python3.12/unittest/case.py", line 589, in _callTestMethod if method() is not None: ^^^^^^^^ File "/<>/src/toil/test/utils/toilDebugTest.py", line 187, in test_print_job_info job_store, job_id = self._get_job_store_and_job_id() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/utils/toilDebugTest.py", line 140, in _get_job_store_and_job_id subprocess.check_call([ File "/usr/lib/python3.12/subprocess.py", line 408, in check_call retcode = call(*popenargs, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 389, in call with Popen(*popenargs, **kwargs) as p: ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 1026, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.12/subprocess.py", line 1955, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' ---------------------------- Captured stdout setup ----------------------------- [TEST] toil.test.utils.toilDebugTest.DebugJobTest:test_print_job_info (Jun 08 2024 12:01:40:379561 PDT) ------------------------------ Captured log call ------------------------------- INFO toil.test:__init__.py:115 Setting up toil.test.utils.toilDebugTest.DebugJobTest.test_print_job_info ... INFO toil.test.utils.toilDebugTest:toilDebugTest.py:137 Running workflow that always fails INFO toil.test:__init__.py:120 Tore down toil.test.utils.toilDebugTest.DebugJobTest.test_print_job_info __________________________ DebugJobTest.test_run_job ___________________________ [gw0] linux -- Python 3.12.3 /usr/bin/python3.12 Traceback (most recent call last): File "/usr/lib/python3.12/unittest/case.py", line 58, in testPartExecutor yield File "/usr/lib/python3.12/unittest/case.py", line 634, in run self._callTestMethod(testMethod) File "/usr/lib/python3.12/unittest/case.py", line 589, in _callTestMethod if method() is not None: ^^^^^^^^ File "/<>/src/toil/test/utils/toilDebugTest.py", line 165, in test_run_job job_store, job_id = self._get_job_store_and_job_id() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/<>/src/toil/test/utils/toilDebugTest.py", line 140, in _get_job_store_and_job_id subprocess.check_call([ File "/usr/lib/python3.12/subprocess.py", line 408, in check_call retcode = call(*popenargs, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 389, in call with Popen(*popenargs, **kwargs) as p: ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/subprocess.py", line 1026, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.12/subprocess.py", line 1955, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' ---------------------------- Captured stdout setup ----------------------------- [TEST] toil.test.utils.toilDebugTest.DebugJobTest:test_run_job (Jun 08 2024 12:01:40:382919 PDT) ------------------------------ Captured log call ------------------------------- INFO toil.test:__init__.py:115 Setting up toil.test.utils.toilDebugTest.DebugJobTest.test_run_job ... INFO toil.test.utils.toilDebugTest:toilDebugTest.py:137 Running workflow that always fails INFO toil.test:__init__.py:120 Tore down toil.test.utils.toilDebugTest.DebugJobTest.test_run_job =========================== short test summary info ============================ FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testGetPIDStatus - FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedToilWF - FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' FAILED src/toil/test/utils/utilsTest.py::UtilsTest::testRestartAttribute - FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' FAILED src/toil/test/utils/toilDebugTest.py::testFetchJobStoreFiles - FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' FAILED src/toil/test/utils/toilDebugTest.py::DebugJobTest::test_print_job_info - FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' FAILED src/toil/test/utils/toilDebugTest.py::DebugJobTest::test_run_job - FileNotFoundError: [Errno 2] No such file or directory: 'python3.11' ERROR src/toil/test/cactus/test_cactus_integration.py::AbstractClusterTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/cactus/test_cactus_integration.py::CactusIntegrationTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/cactus/test_cactus_integration.py::AbstractClusterTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/cactus/test_cactus_integration.py::CactusIntegrationTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/cactus/test_cactus_integration.py::AbstractClusterTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/cactus/test_cactus_integration.py::CactusIntegrationTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/cactus/test_cactus_integration.py::AbstractClusterTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/cactus/test_cactus_integration.py::CactusIntegrationTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/provisioners/clusterTest.py::AbstractClusterTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/provisioners/clusterTest.py::AbstractClusterTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/provisioners/clusterTest.py::AbstractClusterTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/provisioners/clusterTest.py::AbstractClusterTest - AttributeError: 'NoneType' object has no attribute 'strip' ERROR src/toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore - toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store are not installed ERROR src/toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore - toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store are not installed ERROR src/toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore - toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store are not installed ERROR src/toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore - toil.jobStores.utils.JobStoreUnavailableException: libraries for aws job store are not installed ====== 6 failed, 160 passed, 349 skipped, 16 errors in 292.24s (0:04:52) ======= E: pybuild pybuild:389: test: plugin custom failed with: exit code=1: HOME=/<>/.pybuild/cpython3_3.12_toil python3.12 setup.py develop --user && PYTHONPATH=/<>/src:$PYTHONPATH PATH=/<>/.pybuild/cpython3_3.12_toil/.local/bin/:$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.12 -m pytest -n auto --dist loadscope -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/wdltoil_test.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py --ignore src/toil/test/lib/aws/test_iam.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest or test_cwl_toil_kill or testImportReadFileCompatibility or CleanWorkDirTest or DeferredFunctionTest or WdlToilTest or test_cactus_integration)" /<>/src/toil/test dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.12 returned exit code 13 make[1]: *** [debian/rules:25: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:11: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-06-08T12:05:40Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 91192 Build-Time: 344 Distribution: oracular-proposed Fail-Stage: build Host Architecture: amd64 Install-Time: 36 Job: toil_6.1.0-4.dsc Machine Architecture: amd64 Package: toil Package-Time: 380 Source-Version: 6.1.0-4 Space: 91192 Status: attempted Version: 6.1.0-4 -------------------------------------------------------------------------------- Finished at 2024-06-08T12:05:40Z Build needed 00:06:20, 91192k disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=oracular --arch=amd64 PACKAGEBUILD-28289389 Scanning for processes to kill in build PACKAGEBUILD-28289389