tophat 2.1.1+dfsg1-1 source package in Ubuntu


tophat (2.1.1+dfsg1-1) unstable; urgency=medium

  * Team upload

  * debian/upstream/metadata:
    - Added references to registries
    - yamllint cleanliness

  [ Nadiya Sitdykova ]
  * add info about debian/tests/test_data

  [ Fabian Klötzl ]
  * remove convenience copy of samtools.
    Closes: #780816
  * adapt tophat script to recent samtools version

  [ Andreas Tille ]
  * Remove unused license paragraph
  * Standards-Version: 4.1.1
  * Really remove samtools code copy also from source tarball
  * Versioned Depends: samtools (>= 1.5)
  * d/watch: enable numbered dfsg-appendices

 -- Fabian Klötzl <email address hidden>  Wed, 06 Dec 2017 16:13:31 +0100

Upload details

Uploaded by:
Debian Med on 2017-12-07
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release on 2017-12-08 universe science


File Size SHA-256 Checksum
tophat_2.1.1+dfsg1-1.dsc 2.1 KiB 54be255b38366529a4301e365048454c2383be6cf0e4f845713334a1f0fb9256
tophat_2.1.1+dfsg1.orig.tar.xz 341.8 KiB 16c1b414e8dcb6bb241cc7560d1e7495f00b39fd0ef5b2c3d09e19c1685219c3
tophat_2.1.1+dfsg1-1.debian.tar.xz 18.0 KiB 1a188d45e39a1b6975bcf03b357c0024ece00b2dba7d85bf70a64d00ec1a7f6c

No changes file available.

Binary packages built by this source

tophat: fast splice junction mapper for RNA-Seq reads

 TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra
 high-throughput short read aligner Bowtie, and then analyzes the
 mapping results to identify splice junctions between exons.
 TopHat is a collaborative effort between the University of Maryland
 Center for Bioinformatics and Computational Biology and the
 University of California, Berkeley Departments of Mathematics and
 Molecular and Cell Biology.

tophat-dbgsym: debug symbols for tophat