toppred 1.10-1 source package in Ubuntu
Changelog
toppred (1.10-1) unstable; urgency=low * Initial release (Closes: #776709) -- Andreas Tille <email address hidden> Sat, 31 Jan 2015 12:59:46 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Low Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Xenial | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| toppred_1.10-1.dsc | 1.9 KiB | d575d8721faddeb0093131afc0e7e1f0265c282c667e446a0eb8f69508fba1a8 |
| toppred_1.10.orig.tar.gz | 155.0 KiB | 3593666a4ae65b752e8d7945dc9ce1b8d21d888190f9917c31c48335157394b3 |
| toppred_1.10-1.debian.tar.xz | 2.3 KiB | 8b00e3fd051b928d1fa6cfd04f925ef4afd58cda05a14a6fc6b6ddd1ac9ef432 |
No changes file available.
Binary packages built by this source
- toppred: No summary available for toppred in ubuntu wily.
No description available for toppred in ubuntu wily.
- toppred-dbgsym: debug symbols for package toppred
Toppred is a program to determine the topology of a transmembrane
protein based on G. von Heijne algorithm.
.
Each sequence from seq data in fasta format is processed, and toppred
generate the Hydrophobycity profile of the sequence, and the
corresponding hydrophobycities values in the file sequence-ID.hydro.
.
Furthermore, the predicted topologies are represented as png images.
Each topology is stored in file sequence-ID-number. png
.
The hydrophobicity profile is computed using a window formed by a core
rectangular window of size n, flanked by 2 triangular windows of size q.
NB rectangular and triangular mean that the ponderation values inside
those windows are respectively constant and variable.
.
This program is a new implementation of the original toppred program,
based on G. von Heijne algorithm
