RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-23 3.19.0-42-generic #48~14.04.1-Ubuntu SMP Fri Dec 18 10:24:49 UTC 2015 x86_64 Buildd toolchain package versions: launchpad-buildd_135 python-lpbuildd_135 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 29 Dec 11:08:30 ntpdate[1653]: adjust time server 10.211.37.1 offset 0.053821 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8770297', '/home/buildd/filecache-default/8204889cda79fca0b488b979ea0c52fb9d6dbd17'] Unpacking chroot for build PACKAGEBUILD-8770297 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8770297'] Mounting chroot for build PACKAGEBUILD-8770297 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8770297', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8770297 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8770297', 'amd64'] Updating debian chroot for build PACKAGEBUILD-8770297 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [73.5 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [73.5 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [227 kB] Get:5 http://ftpmaster.internal xenial/main amd64 Packages [1463 kB] Get:6 http://ftpmaster.internal xenial/universe amd64 Packages [7099 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [848 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4758 kB] Get:9 http://ftpmaster.internal xenial-security/main amd64 Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe amd64 Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main amd64 Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe amd64 Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main amd64 Packages [116 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe amd64 Packages [394 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [66.8 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [242 kB] Fetched 15.6 MB in 6s (2518 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: perl-modules* The following NEW packages will be installed: libapt-pkg5.0 libisl15 libperl5.22 libprocps4 perl-modules-5.22 The following packages will be upgraded: advancecomp apt apt-transport-https base-files binutils bsdutils cpp cpp-5 debconf diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libffi6 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 liblsan0 libmount1 libmpfr4 libmpx0 libncurses5 libncursesw5 libp11-kit0 libpng12-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount multiarch-support ncurses-base ncurses-bin openssl perl perl-base pkg-create-dbgsym pkgbinarymangler procps systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 110 upgraded, 5 newly installed, 1 to remove and 0 not upgraded. Need to get 137 MB of archives. After this operation, 365 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files amd64 9.4ubuntu3 [62.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils amd64 1:2.27.1-1ubuntu3 [51.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils amd64 1:3.3-3 [156 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg amd64 1.18.3ubuntu1 [2081 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev amd64 2.21-0ubuntu5 [1951 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin amd64 2.21-0ubuntu5 [68.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial-proposed/main linux-libc-dev amd64 4.3.0-5.16 [819 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 amd64 1:2.24-12 [12.9 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin amd64 2.21-0ubuntu5 [1172 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 amd64 5.3.1-4ubuntu1 [55.0 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 amd64 5.3.1-4ubuntu1 [27.4 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 amd64 5.3.1-4ubuntu1 [8888 B] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 amd64 5.3.1-4ubuntu1 [269 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main liblsan0 amd64 5.3.1-4ubuntu1 [109 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libtsan0 amd64 5.3.1-4ubuntu1 [249 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base amd64 5.3.1-4ubuntu1 [16.3 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 amd64 1:5.3.1-4ubuntu1 [38.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 amd64 5.3.1-4ubuntu1 [100 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libcilkrts5 amd64 5.3.1-4ubuntu1 [40.1 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libmpx0 amd64 5.3.1-4ubuntu1 [9740 B] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main libquadmath0 amd64 5.3.1-4ubuntu1 [131 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 amd64 0.15-3 [514 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 amd64 5.3.1-4ubuntu1 [30.1 MB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 amd64 5.3.1-4ubuntu1 [38.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main binutils amd64 2.25.90.20151211-0ubuntu2 [2311 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 amd64 5.3.1-4ubuntu1 [32.3 MB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 amd64 5.3.1-4ubuntu1 [30.3 MB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev amd64 5.3.1-4ubuntu1 [2232 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev amd64 5.3.1-4ubuntu1 [1424 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 amd64 5.3.1-4ubuntu1 [393 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main libmpfr4 amd64 3.1.3-2 [189 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main libc6 amd64 2.21-0ubuntu5 [4789 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs amd64 1.42.13-1ubuntu1 [188 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs amd64 1.42.13-1ubuntu1 [771 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main findutils amd64 4.4.2-10 [281 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep amd64 2.22-1 [149 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main hostname amd64 3.16ubuntu2 [11.5 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main init amd64 1.24ubuntu2 [3966 B] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 amd64 2.27.1-1ubuntu3 [62.3 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 amd64 2.27.1-1ubuntu3 [14.7 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 amd64 2.27.1-1ubuntu3 [107 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 amd64 2.27.1-1ubuntu3 [139 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils amd64 2.88dsf-59.2ubuntu3 [25.7 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main initscripts amd64 2.88dsf-59.2ubuntu3 [24.8 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main util-linux amd64 2.27.1-1ubuntu3 [847 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 amd64 228-2ubuntu2 [56.6 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main udev amd64 228-2ubuntu2 [977 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 amd64 228-2ubuntu2 [203 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main systemd amd64 228-2ubuntu2 [3494 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 amd64 2.4-3 [56.0 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 amd64 6.0+20151024-2ubuntu1 [77.1 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 amd64 6.0+20151024-2ubuntu1 [93.9 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 amd64 6.0+20151024-2ubuntu1 [116 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 amd64 2:3.3.10-4ubuntu1 [32.8 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main procps amd64 2:3.3.10-4ubuntu1 [222 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libapparmor1 amd64 2.10-0ubuntu9 [29.0 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 amd64 1:2.4.4-4ubuntu1 [36.3 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 amd64 2.27.1-1ubuntu3 [114 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main libseccomp2 amd64 2.2.3-2ubuntu3 [35.0 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin amd64 1:2.24-12 [20.2 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20150917ubuntu1 [13.4 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main mount amd64 2.27.1-1ubuntu3 [121 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin amd64 6.0+20151024-2ubuntu1 [135 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl-modules-5.22 all 5.22.1-3 [2648 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libperl5.22 amd64 5.22.1-3 [3322 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl amd64 5.22.1-3 [237 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl-base amd64 5.22.1-3 [1281 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main tar amd64 1.28-2.1 [209 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libapt-pkg5.0 amd64 1.1.9 [680 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt amd64 1.1.9 [963 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main gpgv amd64 1.4.19-6ubuntu1 [165 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main gnupg amd64 1.4.19-6ubuntu1 [626 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv amd64 228-2ubuntu2 [15.1 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libffi6 amd64 3.2.1-4 [17.8 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libp11-kit0 amd64 0.23.2-3 [107 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 amd64 4.7-3 [43.1 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 amd64 3.3.18-1ubuntu1 [520 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libldap-2.4-2 amd64 2.4.41+dfsg-1ubuntu3 [160 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 amd64 1.42.13-1ubuntu1 [65.7 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 amd64 0.198ubuntu1 [6368 B] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main libdevmapper1.02.1 amd64 2:1.02.110-1ubuntu2 [145 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 amd64 1.21-1 [34.4 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcrypt20 amd64 1.6.4-4 [336 kB] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 amd64 2.4-2 [186 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:91 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 amd64 2.4-3 [79.3 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main libss2 amd64 1.42.13-1ubuntu1 [70.0 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support amd64 2.21-0ubuntu5 [7174 B] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 amd64 1.2.54-1 [116 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 amd64 3.9.2-1 [395 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 amd64 1.0.2e-1ubuntu1 [1080 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main dmsetup amd64 2:1.02.110-1ubuntu2 [59.8 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 amd64 1.13.2+dfsg-4 [120 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 amd64 1.13.2+dfsg-4 [274 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 amd64 1.13.2+dfsg-4 [30.4 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 amd64 1.13.2+dfsg-4 [81.3 kB] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 amd64 1.32-3ubuntu1 [45.5 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls amd64 7.45.0-1ubuntu1 [183 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt-transport-https amd64 1.1.9 [25.3 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 amd64 1.10.6-1ubuntu1 [161 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main openssl amd64 1.0.2e-1ubuntu1 [491 kB] Get:108 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp amd64 1.20-1 [160 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial/main cpp amd64 4:5.2.1-16ubuntu2 [27.6 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main gcc amd64 4:5.2.1-16ubuntu2 [5208 B] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main g++ amd64 4:5.2.1-16ubuntu2 [1506 B] Get:114 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] Get:115 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 125 [41.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 137 MB in 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Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11709 files and directories currently installed.) Preparing to unpack .../libmount1_2.27.1-1ubuntu3_amd64.deb ... Unpacking libmount1:amd64 (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libmount1:amd64 (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... 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Setting up libtsan0:amd64 (5.3.1-4ubuntu1) ... Setting up libubsan0:amd64 (5.3.1-4ubuntu1) ... Setting up libcilkrts5:amd64 (5.3.1-4ubuntu1) ... Setting up libmpx0:amd64 (5.3.1-4ubuntu1) ... Setting up libquadmath0:amd64 (5.3.1-4ubuntu1) ... Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... Setting up libisl15:amd64 (0.15-3) ... Setting up libmpfr4:amd64 (3.1.3-2) ... Setting up cpp-5 (5.3.1-4ubuntu1) ... Setting up libcc1-0:amd64 (5.3.1-4ubuntu1) ... Setting up binutils (2.25.90.20151211-0ubuntu2) ... Setting up libgcc-5-dev:amd64 (5.3.1-4ubuntu1) ... Setting up gcc-5 (5.3.1-4ubuntu1) ... Setting up libstdc++-5-dev:amd64 (5.3.1-4ubuntu1) ... Setting up g++-5 (5.3.1-4ubuntu1) ... Setting up libprocps4:amd64 (2:3.3.10-4ubuntu1) ... Setting up procps (2:3.3.10-4ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (228-2ubuntu2) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. virtio network devices detected, disabling predictable interface names in /etc/systemd/network/50-virtio-kernel-names.link Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Removing obsolete conffile /etc/init.d/lvm2 ... Setting up perl-modules-5.22 (5.22.1-3) ... Setting up libperl5.22:amd64 (5.22.1-3) ... Setting up perl (5.22.1-3) ... Setting up apt (1.1.9) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libffi6:amd64 (3.2.1-4) ... Setting up libp11-kit0:amd64 (0.23.2-3) ... Setting up libtasn1-6:amd64 (4.7-3) ... Setting up libgnutls-deb0-28:amd64 (3.3.18-1ubuntu1) ... Setting up libldap-2.4-2:amd64 (2.4.41+dfsg-1ubuntu3) ... Setting up libpng12-0:amd64 (1.2.54-1) ... Setting up libsqlite3-0:amd64 (3.9.2-1) ... Setting up libssl1.0.0:amd64 (1.0.2e-1ubuntu1) ... Setting up dmsetup (2:1.02.110-1ubuntu2) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-4) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-4) ... Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-4) ... Setting up libidn11:amd64 (1.32-3ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.45.0-1ubuntu1) ... Setting up apt-transport-https (1.1.9) ... Setting up libdbus-1-3:amd64 (1.10.6-1ubuntu1) ... Setting up openssl (1.0.2e-1ubuntu1) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-16ubuntu2) ... Setting up libdpkg-perl (1.18.3ubuntu1) ... Setting up dpkg-dev (1.18.3ubuntu1) ... Setting up gcc (4:5.2.1-16ubuntu2) ... Setting up g++ (4:5.2.1-16ubuntu2) ... Setting up pkg-create-dbgsym (0.70) ... Setting up pkgbinarymangler (125) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-2ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8770297', 'amd64', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=xenial-proposed', '--purge=never', '--nolog', '-A', 'transdecoder_2.0.1+dfsg-2.dsc'] Initiating build PACKAGEBUILD-8770297 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-42-generic #48~14.04.1-Ubuntu SMP Fri Dec 18 10:24:49 UTC 2015 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-23.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ transdecoder 2.0.1+dfsg-2 (amd64) 29 Dec 2015 11:09 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: transdecoder Version: 2.0.1+dfsg-2 Source Version: 2.0.1+dfsg-2 Distribution: xenial-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/transdecoder-yiKgCO/transdecoder-2.0.1+dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/transdecoder-yiKgCO' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8770297/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── transdecoder_2.0.1+dfsg-2.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-xPLdBY/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Packages [528 B] Ign:4 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Sources Get:4 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Sources [208 B] Ign:5 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Packages Get:5 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Packages [528 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-xPLdBY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12305 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cd-hit, liburi-perl Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cd-hit, liburi-perl dpkg-deb: building package 'sbuild-build-depends-transdecoder-dummy' in '/«BUILDDIR»/resolver-Yp0c3n/apt_archive/sbuild-build-depends-transdecoder-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Sources [434 B] Ign:4 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Sources Get:5 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Packages [699 B] Ign:5 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Sources [434 B] Get:5 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Packages [699 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install transdecoder build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: bsdmainutils cd-hit debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 liburi-perl libxml2 man-db po-debconf Suggested packages: wamerican | wordlist whois vacation dh-make gettext-doc autopoint groff libwww-perl less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cd-hit debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 liburi-perl libxml2 man-db po-debconf sbuild-build-depends-transdecoder-dummy 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. Need to get 15.3 MB/15.3 MB of archives. After this operation, 58.4 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-transdecoder-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-Yp0c3n/apt_archive ./ sbuild-build-depends-transdecoder-dummy 0.invalid.0 [946 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main amd64 groff-base amd64 1.22.3-4 [1143 kB] Get:3 http://ftpmaster.internal/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-1 [24.9 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main amd64 libmagic1 amd64 1:5.25-2ubuntu1 [216 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main amd64 file amd64 1:5.25-2ubuntu1 [21.2 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main amd64 libasprintf0v5 amd64 0.19.6-1ubuntu1 [6924 B] Get:10 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext-base amd64 0.19.6-1ubuntu1 [48.6 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main amd64 libglib2.0-0 amd64 2.47.3-3 [1114 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main amd64 libicu55 amd64 55.1-6ubuntu1 [7643 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main amd64 libxml2 amd64 2.9.2+zdfsg1-4ubuntu2 [696 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/universe amd64 cd-hit amd64 4.6.1-2012-08-27-2 [701 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext amd64 0.19.6-1ubuntu1 [1063 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main amd64 po-debconf all 1.0.18 [234 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main amd64 libarchive-zip-perl all 1.55-1 [84.1 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.014-1 [5596 B] Get:23 http://ftpmaster.internal/ubuntu xenial/main amd64 debhelper all 9.20151126ubuntu1 [741 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main amd64 liburi-perl all 1.69-1 [84.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.3 MB in 0s (24.6 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12305 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-4_amd64.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_amd64.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package libasprintf0v5:amd64. Preparing to unpack .../libasprintf0v5_0.19.6-1ubuntu1_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.6-1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.6-1ubuntu1_amd64.deb ... Unpacking gettext-base (0.19.6-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.47.3-3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.47.3-3) ... Selecting previously unselected package libicu55:amd64. Preparing to unpack .../libicu55_55.1-6ubuntu1_amd64.deb ... Unpacking libicu55:amd64 (55.1-6ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4ubuntu2_amd64.deb ... Unpacking libxml2:amd64 (2.9.2+zdfsg1-4ubuntu2) ... Selecting previously unselected package cd-hit. Preparing to unpack .../cd-hit_4.6.1-2012-08-27-2_amd64.deb ... Unpacking cd-hit (4.6.1-2012-08-27-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.11-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.6-1ubuntu1_amd64.deb ... Unpacking gettext (0.19.6-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.55-1_all.deb ... Unpacking libarchive-zip-perl (1.55-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.014-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.014-1_all.deb ... Unpacking dh-strip-nondeterminism (0.014-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20151126ubuntu1_all.deb ... Unpacking debhelper (9.20151126ubuntu1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../liburi-perl_1.69-1_all.deb ... Unpacking liburi-perl (1.69-1) ... Selecting previously unselected package sbuild-build-depends-transdecoder-dummy. Preparing to unpack .../sbuild-build-depends-transdecoder-dummy.deb ... Unpacking sbuild-build-depends-transdecoder-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:amd64 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:amd64 (0.19.6-1ubuntu1) ... Setting up gettext-base (0.19.6-1ubuntu1) ... Setting up libglib2.0-0:amd64 (2.47.3-3) ... No schema files found: doing nothing. Setting up libicu55:amd64 (55.1-6ubuntu1) ... Setting up libxml2:amd64 (2.9.2+zdfsg1-4ubuntu2) ... Setting up cd-hit (4.6.1-2012-08-27-2) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up gettext (0.19.6-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.55-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liburi-perl (1.69-1) ... Setting up debhelper (9.20151126ubuntu1) ... Setting up sbuild-build-depends-transdecoder-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.014-1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-42-generic amd64 (x86_64) Toolchain package versions: binutils_2.25.90.20151211-0ubuntu2 dpkg-dev_1.18.3ubuntu1 g++-5_5.3.1-4ubuntu1 gcc-5_5.3.1-4ubuntu1 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.3.1-4ubuntu1 libstdc++6_5.3.1-4ubuntu1 linux-libc-dev_4.3.0-5.16 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.9 apt-transport-https_1.1.9 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151211-0ubuntu2 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 cd-hit_4.6.1-2012-08-27-2 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.3.1-4ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151126ubuntu1 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu2 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-16ubuntu2 g++-5_5.3.1-4ubuntu1 gcc_4:5.2.1-16ubuntu2 gcc-5_5.3.1-4ubuntu1 gcc-5-base_5.3.1-4ubuntu1 gettext_0.19.6-1ubuntu1 gettext-base_0.19.6-1ubuntu1 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu9 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.1.9 libarchive-zip-perl_1.55-1 libasan2_5.3.1-4ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.6-1ubuntu1 libatomic1_5.3.1-4ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu5 libc-dev-bin_2.21-0ubuntu5 libc6_2.21-0ubuntu5 libc6-dev_2.21-0ubuntu5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-4ubuntu1 libcilkrts5_5.3.1-4ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu1 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu2 libdpkg-perl_1.18.3ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.3.1-4ubuntu1 libgcc1_1:5.3.1-4ubuntu1 libgcrypt20_1.6.4-4 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.3.1-4ubuntu1 libgpg-error0_1.21-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libisl13_0.14-2 libisl15_0.15-3 libitm1_5.3.1-4ubuntu1 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-8ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.3.1-4ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libmpx0_5.3.1-4ubuntu1 libncurses5_6.0+20151024-2ubuntu1 libncursesw5_6.0+20151024-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7.1ubuntu1 libperl5.22_5.22.1-3 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_1:3.3.9-1ubuntu8 libprocps4_2:3.3.10-4ubuntu1 libquadmath0_5.3.1-4ubuntu1 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu3 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2e-1ubuntu1 libstdc++-5-dev_5.3.1-4ubuntu1 libstdc++6_5.3.1-4ubuntu1 libsystemd0_228-2ubuntu2 libtasn1-6_4.7-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2ubuntu1 libtsan0_5.3.1-4ubuntu1 libubsan0_5.3.1-4ubuntu1 libudev1_228-2ubuntu2 libunistring0_0.9.3-5.2ubuntu1 liburi-perl_1.69-1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu2 linux-libc-dev_4.3.0-5.16 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu5 ncurses-base_6.0+20151024-2ubuntu1 ncurses-bin_6.0+20151024-2ubuntu1 openssl_1.0.2e-1ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 pkg-create-dbgsym_0.70 pkgbinarymangler_125 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu1 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-transdecoder-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu2 systemd-sysv_228-2ubuntu2 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu2 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Mon Dec 28 23:55:47 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./transdecoder_2.0.1+dfsg-2.dsc dpkg-source: info: extracting transdecoder in transdecoder-2.0.1+dfsg dpkg-source: info: unpacking transdecoder_2.0.1+dfsg.orig.tar.gz dpkg-source: info: unpacking transdecoder_2.0.1+dfsg-2.debian.tar.xz dpkg-source: info: applying cd-hit-est-rename dpkg-source: info: applying fix-whatis dpkg-source: info: applying reproducible-build Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/transdecoder-2.0.1+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/transdecoder-2.0.1+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package transdecoder dpkg-buildpackage: source version 2.0.1+dfsg-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build transdecoder-2.0.1+dfsg dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' cd ./sample_data && ./cleanme.pl make[1]: Leaving directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' debian/rules override_dh_clean make[1]: Entering directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' # generated man pages dh_clean debian/TransDecoder.LongOrfs.1 debian/TransDecoder.Predict.1 make[1]: Leaving directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' debian/rules build dh build --parallel dh_testdir -O--parallel dh_auto_configure -O--parallel dh_auto_test -O--parallel make -j4 test make[1]: Entering directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' cd ./sample_data/ && ./runMe.sh -parsing cufflinks output: transcripts.gtf -parsing genome fasta: test.genome.fasta -done parsing genome. // processing 7000000090838467 -first extracting base frequencies, we'll need them later. CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/compute_base_probs.pl transcripts.fasta 0 > transcripts.fasta.transdecoder_dir/base_freqs.dat CMD: touch transcripts.fasta.transdecoder_dir/base_freqs.dat.ok - extracting ORFs from transcripts. -total transcripts to examine: 64 ################################# ### Done preparing long ORFs. ### ################################## Use file: transcripts.fasta.transdecoder_dir/longest_orfs.pep for Pfam and/or BlastP searches to enable homology-based coding region identification. Then, run TransDecoder.Predict for your final coding region predictions. CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/get_top_longest_fasta_entries.pl transcripts.fasta.transdecoder_dir/longest_orfs.cds 5000 > transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_longest_5000 CMD: /usr/lib/cd-hit/cd-hit-est -r 1 -i transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_longest_5000 -c 0.80 -o transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_longest_5000.nr80 -M 0 ================================================================ Program: CD-HIT, V4.6 (+OpenMP), Oct 21 2013, 16:36:23 Command: /usr/lib/cd-hit/cd-hit-est -r 1 -i transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_longest_5000 -c 0.80 -o transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_longest_5000.nr80 -M 0 Started: Tue Dec 29 11:09:43 2015 ================================================================ Output ---------------------------------------------------------------- total seq: 95 longest and shortest : 3954 and 300 Total letters: 93807 Sequences have been sorted Approximated minimal memory consumption: Sequence : 0M Buffer : 1 X 12M = 12M Table : 1 X 16M = 16M Miscellaneous : 4M Total : 33M Table limit with the given memory limit: Max number of representatives: 4000000 Max number of word counting entries: 659477000 comparing sequences from 0 to 95 95 finished 60 clusters Apprixmated maximum memory consumption: 34M writing new database writing clustering information program completed ! Total CPU time 0.36 CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/get_top_longest_fasta_entries.pl transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_longest_5000.nr80 500 > transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_500_longest CMD: touch transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_500_longest.ok CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/seq_n_baseprobs_to_logliklihood_vals.pl transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_500_longest transcripts.fasta.transdecoder_dir/base_freqs.dat > transcripts.fasta.transdecoder_dir/hexamer.scores CMD: touch transcripts.fasta.transdecoder_dir/hexamer.scores.ok CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/score_CDS_liklihood_all_6_frames.pl transcripts.fasta.transdecoder_dir/longest_orfs.cds transcripts.fasta.transdecoder_dir/hexamer.scores > transcripts.fasta.transdecoder_dir/longest_orfs.cds.scores CMD: touch transcripts.fasta.transdecoder_dir/longest_orfs.cds.scores.ok CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/index_gff3_files_by_isoform.pl transcripts.fasta.transdecoder_dir/longest_orfs.gff3 -indexing [CUFF.1.1|g.67] -indexing [CUFF.11.1|g.25] -indexing [CUFF.12.1|g.61] -indexing [CUFF.12.1|g.62] -indexing [CUFF.13.1|g.46] -indexing [CUFF.13.1|g.47] -indexing [CUFF.13.2|g.48] -indexing [CUFF.13.3|g.49] -indexing [CUFF.14.1|g.45] -indexing [CUFF.15.1|g.40] -indexing [CUFF.16.1|g.19] -indexing [CUFF.17.1|g.3] -indexing [CUFF.18.1|g.60] -indexing [CUFF.19.1|g.74] -indexing [CUFF.2.1|g.1] -indexing [CUFF.20.1|g.23] -indexing [CUFF.20.1|g.24] -indexing [CUFF.24.1|g.83] -indexing [CUFF.25.1|g.14] -indexing [CUFF.26.1|g.65] -indexing [CUFF.26.1|g.64] -indexing [CUFF.26.1|g.63] -indexing [CUFF.27.1|g.50] -indexing [CUFF.27.1|g.52] -indexing [CUFF.27.1|g.51] -indexing [CUFF.28.1|g.44] -indexing [CUFF.29.1|g.39] -indexing [CUFF.3.1|g.80] -indexing [CUFF.30.1|g.94] -indexing [CUFF.30.2|g.93] -indexing [CUFF.31.1|g.42] -indexing [CUFF.32.1|g.55] -indexing [CUFF.32.1|g.56] -indexing [CUFF.32.1|g.57] -indexing [CUFF.32.1|g.54] -indexing [CUFF.34.1|g.69] -indexing [CUFF.34.1|g.68] -indexing [CUFF.35.1|g.43] -indexing [CUFF.36.1|g.41] -indexing [CUFF.37.1|g.18] -indexing [CUFF.37.1|g.17] -indexing [CUFF.38.1|g.28] -indexing [CUFF.38.1|g.29] -indexing [CUFF.38.1|g.26] -indexing [CUFF.38.1|g.30] -indexing [CUFF.38.1|g.27] -indexing [CUFF.39.1|g.73] -indexing [CUFF.39.1|g.72] -indexing [CUFF.4.1|g.2] -indexing [CUFF.40.1|g.38] -indexing [CUFF.40.1|g.36] -indexing [CUFF.40.1|g.37] -indexing [CUFF.40.1|g.35] -indexing [CUFF.41.1|g.12] -indexing [CUFF.41.1|g.10] -indexing [CUFF.41.1|g.11] -indexing [CUFF.41.1|g.9] -indexing [CUFF.42.1|g.22] -indexing [CUFF.42.1|g.21] -indexing [CUFF.42.1|g.20] -indexing [CUFF.43.1|g.8] -indexing [CUFF.44.1|g.95] -indexing [CUFF.45.1|g.78] -indexing [CUFF.45.1|g.77] -indexing [CUFF.46.1|g.53] -indexing [CUFF.47.1|g.13] -indexing [CUFF.48.1|g.89] -indexing [CUFF.48.1|g.91] -indexing [CUFF.48.1|g.90] -indexing [CUFF.49.1|g.59] -indexing [CUFF.49.1|g.58] -indexing [CUFF.5.1|g.15] -indexing [CUFF.50.1|g.32] -indexing [CUFF.50.1|g.33] -indexing [CUFF.50.1|g.31] -indexing [CUFF.50.1|g.34] -indexing [CUFF.51.1|g.81] -indexing [CUFF.51.1|g.82] -indexing [CUFF.52.1|g.7] -indexing [CUFF.52.1|g.6] -indexing [CUFF.52.1|g.5] -indexing [CUFF.53.1|g.71] -indexing [CUFF.54.1|g.79] -indexing [CUFF.55.1|g.16] -indexing [CUFF.57.1|g.84] -indexing [CUFF.58.1|g.76] -indexing [CUFF.58.1|g.75] -indexing [CUFF.59.1|g.70] -indexing [CUFF.6.1|g.66] -indexing [CUFF.60.1|g.87] -indexing [CUFF.60.1|g.88] -indexing [CUFF.60.2|g.86] -indexing [CUFF.60.2|g.85] -indexing [CUFF.7.1|g.92] -indexing [CUFF.9.1|g.4] Indexed CUFF.1.1|m.67 Indexed CUFF.11.1|m.25 Indexed CUFF.12.1|m.61 Indexed CUFF.12.1|m.62 Indexed CUFF.13.1|m.46 Indexed CUFF.13.1|m.47 Indexed CUFF.13.2|m.48 Indexed CUFF.13.3|m.49 Indexed CUFF.14.1|m.45 Indexed CUFF.15.1|m.40 Indexed CUFF.16.1|m.19 Indexed CUFF.17.1|m.3 Indexed CUFF.18.1|m.60 Indexed CUFF.19.1|m.74 Indexed CUFF.2.1|m.1 Indexed CUFF.20.1|m.23 Indexed CUFF.20.1|m.24 Indexed CUFF.24.1|m.83 Indexed CUFF.25.1|m.14 Indexed CUFF.26.1|m.65 Indexed CUFF.26.1|m.64 Indexed CUFF.26.1|m.63 Indexed CUFF.27.1|m.50 Indexed CUFF.27.1|m.52 Indexed CUFF.27.1|m.51 Indexed CUFF.28.1|m.44 Indexed CUFF.29.1|m.39 Indexed CUFF.3.1|m.80 Indexed CUFF.30.1|m.94 Indexed CUFF.30.2|m.93 Indexed CUFF.31.1|m.42 Indexed CUFF.32.1|m.55 Indexed CUFF.32.1|m.56 Indexed CUFF.32.1|m.57 Indexed CUFF.32.1|m.54 Indexed CUFF.34.1|m.69 Indexed CUFF.34.1|m.68 Indexed CUFF.35.1|m.43 Indexed CUFF.36.1|m.41 Indexed CUFF.37.1|m.18 Indexed CUFF.37.1|m.17 Indexed CUFF.38.1|m.28 Indexed CUFF.38.1|m.29 Indexed CUFF.38.1|m.26 Indexed CUFF.38.1|m.30 Indexed CUFF.38.1|m.27 Indexed CUFF.39.1|m.73 Indexed CUFF.39.1|m.72 Indexed CUFF.4.1|m.2 Indexed CUFF.40.1|m.38 Indexed CUFF.40.1|m.36 Indexed CUFF.40.1|m.37 Indexed CUFF.40.1|m.35 Indexed CUFF.41.1|m.12 Indexed CUFF.41.1|m.10 Indexed CUFF.41.1|m.11 Indexed CUFF.41.1|m.9 Indexed CUFF.42.1|m.22 Indexed CUFF.42.1|m.21 Indexed CUFF.42.1|m.20 Indexed CUFF.43.1|m.8 Indexed CUFF.44.1|m.95 Indexed CUFF.45.1|m.78 Indexed CUFF.45.1|m.77 Indexed CUFF.46.1|m.53 Indexed CUFF.47.1|m.13 Indexed CUFF.48.1|m.89 Indexed CUFF.48.1|m.91 Indexed CUFF.48.1|m.90 Indexed CUFF.49.1|m.59 Indexed CUFF.49.1|m.58 Indexed CUFF.5.1|m.15 Indexed CUFF.50.1|m.32 Indexed CUFF.50.1|m.33 Indexed CUFF.50.1|m.31 Indexed CUFF.50.1|m.34 Indexed CUFF.51.1|m.81 Indexed CUFF.51.1|m.82 Indexed CUFF.52.1|m.7 Indexed CUFF.52.1|m.6 Indexed CUFF.52.1|m.5 Indexed CUFF.53.1|m.71 Indexed CUFF.54.1|m.79 Indexed CUFF.55.1|m.16 Indexed CUFF.57.1|m.84 Indexed CUFF.58.1|m.76 Indexed CUFF.58.1|m.75 Indexed CUFF.59.1|m.70 Indexed CUFF.6.1|m.66 Indexed CUFF.60.1|m.87 Indexed CUFF.60.1|m.88 Indexed CUFF.60.2|m.86 Indexed CUFF.60.2|m.85 Indexed CUFF.7.1|m.92 Indexed CUFF.9.1|m.4 CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/gene_list_to_gff.pl transcripts.fasta.transdecoder_dir/longest_orfs.cds.scores.selected transcripts.fasta.transdecoder_dir/longest_orfs.gff3.inx > transcripts.fasta.transdecoder_dir/longest_orfs.cds.best_candidates.gff3 CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/remove_eclipsed_ORFs.pl transcripts.fasta.transdecoder_dir/longest_orfs.cds.best_candidates.gff3 > transcripts.fasta.transdecoder.gff3 -indexing [CUFF.1.1|g.67] -indexing [CUFF.11.1|g.25] -indexing [CUFF.12.1|g.61] -indexing [CUFF.13.1|g.46] -indexing [CUFF.13.1|g.47] -indexing [CUFF.13.2|g.48] -indexing [CUFF.13.3|g.49] -indexing [CUFF.14.1|g.45] -indexing [CUFF.15.1|g.40] -indexing [CUFF.16.1|g.19] -indexing [CUFF.17.1|g.3] -indexing [CUFF.18.1|g.60] -indexing [CUFF.19.1|g.74] -indexing [CUFF.2.1|g.1] -indexing [CUFF.20.1|g.23] -indexing [CUFF.20.1|g.24] -indexing [CUFF.24.1|g.83] -indexing [CUFF.25.1|g.14] -indexing [CUFF.26.1|g.63] -indexing [CUFF.27.1|g.50] -indexing [CUFF.28.1|g.44] -indexing [CUFF.29.1|g.39] -indexing [CUFF.3.1|g.80] -indexing [CUFF.30.1|g.94] -indexing [CUFF.30.2|g.93] -indexing [CUFF.31.1|g.42] -indexing [CUFF.32.1|g.56] -indexing [CUFF.32.1|g.54] -indexing [CUFF.34.1|g.69] -indexing [CUFF.34.1|g.68] -indexing [CUFF.35.1|g.43] -indexing [CUFF.36.1|g.41] -indexing [CUFF.37.1|g.17] -indexing [CUFF.38.1|g.27] -indexing [CUFF.38.1|g.28] -indexing [CUFF.38.1|g.29] -indexing [CUFF.38.1|g.26] -indexing [CUFF.39.1|g.72] -indexing [CUFF.4.1|g.2] -indexing [CUFF.40.1|g.36] -indexing [CUFF.40.1|g.37] -indexing [CUFF.40.1|g.35] -indexing [CUFF.41.1|g.11] -indexing [CUFF.41.1|g.10] -indexing [CUFF.41.1|g.9] -indexing [CUFF.42.1|g.21] -indexing [CUFF.42.1|g.20] -indexing [CUFF.43.1|g.8] -indexing [CUFF.44.1|g.95] -indexing [CUFF.45.1|g.78] -indexing [CUFF.45.1|g.77] -indexing [CUFF.46.1|g.53] -indexing [CUFF.47.1|g.13] -indexing [CUFF.48.1|g.89] -indexing [CUFF.48.1|g.90] -indexing [CUFF.48.1|g.91] -indexing [CUFF.49.1|g.58] -indexing [CUFF.49.1|g.59] -indexing [CUFF.5.1|g.15] -indexing [CUFF.50.1|g.33] -indexing [CUFF.50.1|g.31] -indexing [CUFF.50.1|g.32] -indexing [CUFF.51.1|g.82] -indexing [CUFF.51.1|g.81] -indexing [CUFF.52.1|g.6] -indexing [CUFF.52.1|g.5] -indexing [CUFF.52.1|g.7] -indexing [CUFF.53.1|g.71] -indexing [CUFF.54.1|g.79] -indexing [CUFF.55.1|g.16] -indexing [CUFF.57.1|g.84] -indexing [CUFF.58.1|g.75] -indexing [CUFF.59.1|g.70] -indexing [CUFF.6.1|g.66] -indexing [CUFF.60.1|g.88] -indexing [CUFF.60.1|g.87] -indexing [CUFF.60.2|g.85] -indexing [CUFF.60.2|g.86] -indexing [CUFF.7.1|g.92] -indexing [CUFF.9.1|g.4] CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/gff3_file_to_bed.pl transcripts.fasta.transdecoder.gff3 > transcripts.fasta.transdecoder.bed -indexing [CUFF.1.1|g.67] -indexing [CUFF.11.1|g.25] -indexing [CUFF.12.1|g.61] -indexing [CUFF.13.1|g.47] -indexing [CUFF.13.1|g.46] -indexing [CUFF.13.2|g.48] -indexing [CUFF.13.3|g.49] -indexing [CUFF.14.1|g.45] -indexing [CUFF.15.1|g.40] -indexing [CUFF.16.1|g.19] -indexing [CUFF.17.1|g.3] -indexing [CUFF.18.1|g.60] -indexing [CUFF.19.1|g.74] -indexing [CUFF.2.1|g.1] -indexing [CUFF.20.1|g.24] -indexing [CUFF.20.1|g.23] -indexing [CUFF.24.1|g.83] -indexing [CUFF.25.1|g.14] -indexing [CUFF.26.1|g.63] -indexing [CUFF.27.1|g.50] -indexing [CUFF.28.1|g.44] -indexing [CUFF.29.1|g.39] -indexing [CUFF.3.1|g.80] -indexing [CUFF.30.1|g.94] -indexing [CUFF.30.2|g.93] -indexing [CUFF.31.1|g.42] -indexing [CUFF.32.1|g.56] -indexing [CUFF.32.1|g.54] -indexing [CUFF.34.1|g.68] -indexing [CUFF.34.1|g.69] -indexing [CUFF.35.1|g.43] -indexing [CUFF.36.1|g.41] -indexing [CUFF.37.1|g.17] -indexing [CUFF.38.1|g.26] -indexing [CUFF.38.1|g.28] -indexing [CUFF.38.1|g.29] -indexing [CUFF.38.1|g.27] -indexing [CUFF.39.1|g.72] -indexing [CUFF.4.1|g.2] -indexing [CUFF.40.1|g.37] -indexing [CUFF.40.1|g.36] -indexing [CUFF.40.1|g.35] -indexing [CUFF.41.1|g.9] -indexing [CUFF.41.1|g.11] -indexing [CUFF.41.1|g.10] -indexing [CUFF.42.1|g.21] -indexing [CUFF.42.1|g.20] -indexing [CUFF.43.1|g.8] -indexing [CUFF.44.1|g.95] -indexing [CUFF.45.1|g.78] -indexing [CUFF.45.1|g.77] -indexing [CUFF.46.1|g.53] -indexing [CUFF.47.1|g.13] -indexing [CUFF.48.1|g.91] -indexing [CUFF.48.1|g.90] -indexing [CUFF.48.1|g.89] -indexing [CUFF.49.1|g.59] -indexing [CUFF.49.1|g.58] -indexing [CUFF.5.1|g.15] -indexing [CUFF.50.1|g.32] -indexing [CUFF.50.1|g.33] -indexing [CUFF.50.1|g.31] -indexing [CUFF.51.1|g.82] -indexing [CUFF.51.1|g.81] -indexing [CUFF.52.1|g.5] -indexing [CUFF.52.1|g.7] -indexing [CUFF.52.1|g.6] -indexing [CUFF.53.1|g.71] -indexing [CUFF.54.1|g.79] -indexing [CUFF.55.1|g.16] -indexing [CUFF.57.1|g.84] -indexing [CUFF.58.1|g.75] -indexing [CUFF.59.1|g.70] -indexing [CUFF.6.1|g.66] -indexing [CUFF.60.1|g.87] -indexing [CUFF.60.1|g.88] -indexing [CUFF.60.2|g.85] -indexing [CUFF.60.2|g.86] -indexing [CUFF.7.1|g.92] -indexing [CUFF.9.1|g.4] CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/gff3_file_to_proteins.pl transcripts.fasta.transdecoder.gff3 transcripts.fasta > transcripts.fasta.transdecoder.pep -indexing [CUFF.1.1|g.67] -indexing [CUFF.11.1|g.25] -indexing [CUFF.12.1|g.61] -indexing [CUFF.13.1|g.47] -indexing [CUFF.13.1|g.46] -indexing [CUFF.13.2|g.48] -indexing [CUFF.13.3|g.49] -indexing [CUFF.14.1|g.45] -indexing [CUFF.15.1|g.40] -indexing [CUFF.16.1|g.19] -indexing [CUFF.17.1|g.3] -indexing [CUFF.18.1|g.60] -indexing [CUFF.19.1|g.74] -indexing [CUFF.2.1|g.1] -indexing [CUFF.20.1|g.23] -indexing [CUFF.20.1|g.24] -indexing [CUFF.24.1|g.83] -indexing [CUFF.25.1|g.14] -indexing [CUFF.26.1|g.63] -indexing [CUFF.27.1|g.50] -indexing [CUFF.28.1|g.44] -indexing [CUFF.29.1|g.39] -indexing [CUFF.3.1|g.80] -indexing [CUFF.30.1|g.94] -indexing [CUFF.30.2|g.93] -indexing [CUFF.31.1|g.42] -indexing [CUFF.32.1|g.54] -indexing [CUFF.32.1|g.56] -indexing [CUFF.34.1|g.69] -indexing [CUFF.34.1|g.68] -indexing [CUFF.35.1|g.43] -indexing [CUFF.36.1|g.41] -indexing [CUFF.37.1|g.17] -indexing [CUFF.38.1|g.27] -indexing [CUFF.38.1|g.26] -indexing [CUFF.38.1|g.28] -indexing [CUFF.38.1|g.29] -indexing [CUFF.39.1|g.72] -indexing [CUFF.4.1|g.2] -indexing [CUFF.40.1|g.36] -indexing [CUFF.40.1|g.37] -indexing [CUFF.40.1|g.35] -indexing [CUFF.41.1|g.10] -indexing [CUFF.41.1|g.11] -indexing [CUFF.41.1|g.9] -indexing [CUFF.42.1|g.20] -indexing [CUFF.42.1|g.21] -indexing [CUFF.43.1|g.8] -indexing [CUFF.44.1|g.95] -indexing [CUFF.45.1|g.78] -indexing [CUFF.45.1|g.77] -indexing [CUFF.46.1|g.53] -indexing [CUFF.47.1|g.13] -indexing [CUFF.48.1|g.91] -indexing [CUFF.48.1|g.89] -indexing [CUFF.48.1|g.90] -indexing [CUFF.49.1|g.58] -indexing [CUFF.49.1|g.59] -indexing [CUFF.5.1|g.15] -indexing [CUFF.50.1|g.32] -indexing [CUFF.50.1|g.33] -indexing [CUFF.50.1|g.31] -indexing [CUFF.51.1|g.81] -indexing [CUFF.51.1|g.82] -indexing [CUFF.52.1|g.5] -indexing [CUFF.52.1|g.6] -indexing [CUFF.52.1|g.7] -indexing [CUFF.53.1|g.71] -indexing [CUFF.54.1|g.79] -indexing [CUFF.55.1|g.16] -indexing [CUFF.57.1|g.84] -indexing [CUFF.58.1|g.75] -indexing [CUFF.59.1|g.70] -indexing [CUFF.6.1|g.66] -indexing [CUFF.60.1|g.87] -indexing [CUFF.60.1|g.88] -indexing [CUFF.60.2|g.86] -indexing [CUFF.60.2|g.85] -indexing [CUFF.7.1|g.92] -indexing [CUFF.9.1|g.4] CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/gff3_file_to_proteins.pl transcripts.fasta.transdecoder.gff3 transcripts.fasta CDS > transcripts.fasta.transdecoder.cds -indexing [CUFF.1.1|g.67] -indexing [CUFF.11.1|g.25] -indexing [CUFF.12.1|g.61] -indexing [CUFF.13.1|g.46] -indexing [CUFF.13.1|g.47] -indexing [CUFF.13.2|g.48] -indexing [CUFF.13.3|g.49] -indexing [CUFF.14.1|g.45] -indexing [CUFF.15.1|g.40] -indexing [CUFF.16.1|g.19] -indexing [CUFF.17.1|g.3] -indexing [CUFF.18.1|g.60] -indexing [CUFF.19.1|g.74] -indexing [CUFF.2.1|g.1] -indexing [CUFF.20.1|g.24] -indexing [CUFF.20.1|g.23] -indexing [CUFF.24.1|g.83] -indexing [CUFF.25.1|g.14] -indexing [CUFF.26.1|g.63] -indexing [CUFF.27.1|g.50] -indexing [CUFF.28.1|g.44] -indexing [CUFF.29.1|g.39] -indexing [CUFF.3.1|g.80] -indexing [CUFF.30.1|g.94] -indexing [CUFF.30.2|g.93] -indexing [CUFF.31.1|g.42] -indexing [CUFF.32.1|g.54] -indexing [CUFF.32.1|g.56] -indexing [CUFF.34.1|g.68] -indexing [CUFF.34.1|g.69] -indexing [CUFF.35.1|g.43] -indexing [CUFF.36.1|g.41] -indexing [CUFF.37.1|g.17] -indexing [CUFF.38.1|g.29] -indexing [CUFF.38.1|g.27] -indexing [CUFF.38.1|g.28] -indexing [CUFF.38.1|g.26] -indexing [CUFF.39.1|g.72] -indexing [CUFF.4.1|g.2] -indexing [CUFF.40.1|g.35] -indexing [CUFF.40.1|g.37] -indexing [CUFF.40.1|g.36] -indexing [CUFF.41.1|g.10] -indexing [CUFF.41.1|g.11] -indexing [CUFF.41.1|g.9] -indexing [CUFF.42.1|g.21] -indexing [CUFF.42.1|g.20] -indexing [CUFF.43.1|g.8] -indexing [CUFF.44.1|g.95] -indexing [CUFF.45.1|g.78] -indexing [CUFF.45.1|g.77] -indexing [CUFF.46.1|g.53] -indexing [CUFF.47.1|g.13] -indexing [CUFF.48.1|g.90] -indexing [CUFF.48.1|g.91] -indexing [CUFF.48.1|g.89] -indexing [CUFF.49.1|g.58] -indexing [CUFF.49.1|g.59] -indexing [CUFF.5.1|g.15] -indexing [CUFF.50.1|g.33] -indexing [CUFF.50.1|g.31] -indexing [CUFF.50.1|g.32] -indexing [CUFF.51.1|g.82] -indexing [CUFF.51.1|g.81] -indexing [CUFF.52.1|g.6] -indexing [CUFF.52.1|g.7] -indexing [CUFF.52.1|g.5] -indexing [CUFF.53.1|g.71] -indexing [CUFF.54.1|g.79] -indexing [CUFF.55.1|g.16] -indexing [CUFF.57.1|g.84] -indexing [CUFF.58.1|g.75] -indexing [CUFF.59.1|g.70] -indexing [CUFF.6.1|g.66] -indexing [CUFF.60.1|g.88] -indexing [CUFF.60.1|g.87] -indexing [CUFF.60.2|g.85] -indexing [CUFF.60.2|g.86] -indexing [CUFF.7.1|g.92] -indexing [CUFF.9.1|g.4] CMD: /«BUILDDIR»/transdecoder-2.0.1+dfsg/util/gff3_file_to_proteins.pl transcripts.fasta.transdecoder.gff3 transcripts.fasta cDNA > transcripts.fasta.transdecoder.mRNA -indexing [CUFF.1.1|g.67] -indexing [CUFF.11.1|g.25] -indexing [CUFF.12.1|g.61] -indexing [CUFF.13.1|g.46] -indexing [CUFF.13.1|g.47] -indexing [CUFF.13.2|g.48] -indexing [CUFF.13.3|g.49] -indexing [CUFF.14.1|g.45] -indexing [CUFF.15.1|g.40] -indexing [CUFF.16.1|g.19] -indexing [CUFF.17.1|g.3] -indexing [CUFF.18.1|g.60] -indexing [CUFF.19.1|g.74] -indexing [CUFF.2.1|g.1] -indexing [CUFF.20.1|g.24] -indexing [CUFF.20.1|g.23] -indexing [CUFF.24.1|g.83] -indexing [CUFF.25.1|g.14] -indexing [CUFF.26.1|g.63] -indexing [CUFF.27.1|g.50] -indexing [CUFF.28.1|g.44] -indexing [CUFF.29.1|g.39] -indexing [CUFF.3.1|g.80] -indexing [CUFF.30.1|g.94] -indexing [CUFF.30.2|g.93] -indexing [CUFF.31.1|g.42] -indexing [CUFF.32.1|g.56] -indexing [CUFF.32.1|g.54] -indexing [CUFF.34.1|g.69] -indexing [CUFF.34.1|g.68] -indexing [CUFF.35.1|g.43] -indexing [CUFF.36.1|g.41] -indexing [CUFF.37.1|g.17] -indexing [CUFF.38.1|g.26] -indexing [CUFF.38.1|g.28] -indexing [CUFF.38.1|g.29] -indexing [CUFF.38.1|g.27] -indexing [CUFF.39.1|g.72] -indexing [CUFF.4.1|g.2] -indexing [CUFF.40.1|g.36] -indexing [CUFF.40.1|g.37] -indexing [CUFF.40.1|g.35] -indexing [CUFF.41.1|g.11] -indexing [CUFF.41.1|g.9] -indexing [CUFF.41.1|g.10] -indexing [CUFF.42.1|g.20] -indexing [CUFF.42.1|g.21] -indexing [CUFF.43.1|g.8] -indexing [CUFF.44.1|g.95] -indexing [CUFF.45.1|g.77] -indexing [CUFF.45.1|g.78] -indexing [CUFF.46.1|g.53] -indexing [CUFF.47.1|g.13] -indexing [CUFF.48.1|g.90] -indexing [CUFF.48.1|g.89] -indexing [CUFF.48.1|g.91] -indexing [CUFF.49.1|g.59] -indexing [CUFF.49.1|g.58] -indexing [CUFF.5.1|g.15] -indexing [CUFF.50.1|g.31] -indexing [CUFF.50.1|g.32] -indexing [CUFF.50.1|g.33] -indexing [CUFF.51.1|g.81] -indexing [CUFF.51.1|g.82] -indexing [CUFF.52.1|g.6] -indexing [CUFF.52.1|g.5] -indexing [CUFF.52.1|g.7] -indexing [CUFF.53.1|g.71] -indexing [CUFF.54.1|g.79] -indexing [CUFF.55.1|g.16] -indexing [CUFF.57.1|g.84] -indexing [CUFF.58.1|g.75] -indexing [CUFF.59.1|g.70] -indexing [CUFF.6.1|g.66] -indexing [CUFF.60.1|g.87] -indexing [CUFF.60.1|g.88] -indexing [CUFF.60.2|g.85] -indexing [CUFF.60.2|g.86] -indexing [CUFF.7.1|g.92] -indexing [CUFF.9.1|g.4] transdecoder is finished. See output files transcripts.fasta.transdecoder.* -indexing [CUFF.1.1|g.67] -indexing [CUFF.11.1|g.25] -indexing [CUFF.12.1|g.61] -indexing [CUFF.13.1|g.47] -indexing [CUFF.13.1|g.46] -indexing [CUFF.13.2|g.48] -indexing [CUFF.13.3|g.49] -indexing [CUFF.14.1|g.45] -indexing [CUFF.15.1|g.40] -indexing [CUFF.16.1|g.19] -indexing [CUFF.17.1|g.3] -indexing [CUFF.18.1|g.60] -indexing [CUFF.19.1|g.74] -indexing [CUFF.2.1|g.1] -indexing [CUFF.20.1|g.23] -indexing [CUFF.20.1|g.24] -indexing [CUFF.24.1|g.83] -indexing [CUFF.25.1|g.14] -indexing [CUFF.26.1|g.63] -indexing [CUFF.27.1|g.50] -indexing [CUFF.28.1|g.44] -indexing [CUFF.29.1|g.39] -indexing [CUFF.3.1|g.80] -indexing [CUFF.30.1|g.94] -indexing [CUFF.30.2|g.93] -indexing [CUFF.31.1|g.42] -indexing [CUFF.32.1|g.56] -indexing [CUFF.32.1|g.54] -indexing [CUFF.34.1|g.68] -indexing [CUFF.34.1|g.69] -indexing [CUFF.35.1|g.43] -indexing [CUFF.36.1|g.41] -indexing [CUFF.37.1|g.17] -indexing [CUFF.38.1|g.26] -indexing [CUFF.38.1|g.28] -indexing [CUFF.38.1|g.29] -indexing [CUFF.38.1|g.27] -indexing [CUFF.39.1|g.72] -indexing [CUFF.4.1|g.2] -indexing [CUFF.40.1|g.35] -indexing [CUFF.40.1|g.36] -indexing [CUFF.40.1|g.37] -indexing [CUFF.41.1|g.9] -indexing [CUFF.41.1|g.10] -indexing [CUFF.41.1|g.11] -indexing [CUFF.42.1|g.20] -indexing [CUFF.42.1|g.21] -indexing [CUFF.43.1|g.8] -indexing [CUFF.44.1|g.95] -indexing [CUFF.45.1|g.77] -indexing [CUFF.45.1|g.78] -indexing [CUFF.46.1|g.53] -indexing [CUFF.47.1|g.13] -indexing [CUFF.48.1|g.90] -indexing [CUFF.48.1|g.91] -indexing [CUFF.48.1|g.89] -indexing [CUFF.49.1|g.58] -indexing [CUFF.49.1|g.59] -indexing [CUFF.5.1|g.15] -indexing [CUFF.50.1|g.33] -indexing [CUFF.50.1|g.31] -indexing [CUFF.50.1|g.32] -indexing [CUFF.51.1|g.81] -indexing [CUFF.51.1|g.82] -indexing [CUFF.52.1|g.6] -indexing [CUFF.52.1|g.5] -indexing [CUFF.52.1|g.7] -indexing [CUFF.53.1|g.71] -indexing [CUFF.54.1|g.79] -indexing [CUFF.55.1|g.16] -indexing [CUFF.57.1|g.84] -indexing [CUFF.58.1|g.75] -indexing [CUFF.59.1|g.70] -indexing [CUFF.6.1|g.66] -indexing [CUFF.60.1|g.87] -indexing [CUFF.60.1|g.88] -indexing [CUFF.60.2|g.86] -indexing [CUFF.60.2|g.85] -indexing [CUFF.7.1|g.92] -indexing [CUFF.9.1|g.4] Warning [1], shouldn't have a minus-strand ORF on a spliced transcript structure. Skipping entry. -indexing [CUFF.32.1|g.54] -indexing [CUFF.37.1|g.17] -indexing [CUFF.20.1|g.23] -indexing [CUFF.38.1|g.29] -indexing [CUFF.42.1|g.20] -indexing [CUFF.34.1|g.68] -indexing [CUFF.60.1|g.88] -indexing [CUFF.60.2|g.86] -indexing [CUFF.50.1|g.32] -indexing [CUFF.7.1|g.92] -indexing [CUFF.1.1|g.67] -indexing [CUFF.52.1|g.5] -indexing [CUFF.47.1|g.13] -indexing [CUFF.5.1|g.15] -indexing [CUFF.6.1|g.66] -indexing [CUFF.16.1|g.19] -indexing [CUFF.19.1|g.74] -indexing [CUFF.49.1|g.58] -indexing [CUFF.20.1|g.24] -indexing [CUFF.36.1|g.41] -indexing [CUFF.9.1|g.4] -indexing [CUFF.38.1|g.28] -indexing [CUFF.51.1|g.82] -indexing [CUFF.40.1|g.37] -indexing [CUFF.31.1|g.42] -indexing [CUFF.50.1|g.31] -indexing [CUFF.13.1|g.46] -indexing [CUFF.42.1|g.21] -indexing [CUFF.30.1|g.94] -indexing [CUFF.26.1|g.63] -indexing [CUFF.44.1|g.95] -indexing [CUFF.4.1|g.2] -indexing [CUFF.58.1|g.75] -indexing [CUFF.50.1|g.33] -indexing [CUFF.43.1|g.8] -indexing [CUFF.41.1|g.10] -indexing [CUFF.13.3|g.49] -indexing [CUFF.14.1|g.45] -indexing [CUFF.27.1|g.50] -indexing [CUFF.40.1|g.36] -indexing [CUFF.59.1|g.70] -indexing [CUFF.52.1|g.6] -indexing [CUFF.38.1|g.27] -indexing [CUFF.18.1|g.60] -indexing [CUFF.35.1|g.43] -indexing [CUFF.41.1|g.11] -indexing [CUFF.48.1|g.89] -indexing [CUFF.57.1|g.84] -indexing [CUFF.25.1|g.14] -indexing [CUFF.28.1|g.44] -indexing [CUFF.60.2|g.85] -indexing [CUFF.48.1|g.91] -indexing [CUFF.34.1|g.69] -indexing [CUFF.2.1|g.1] -indexing [CUFF.45.1|g.78] -indexing [CUFF.46.1|g.53] -indexing [CUFF.55.1|g.16] -indexing [CUFF.12.1|g.61] -indexing [CUFF.45.1|g.77] -indexing [CUFF.54.1|g.79] -indexing [CUFF.49.1|g.59] -indexing [CUFF.60.1|g.87] -indexing [CUFF.52.1|g.7] -indexing [CUFF.32.1|g.56] -indexing [CUFF.24.1|g.83] -indexing [CUFF.40.1|g.35] -indexing [CUFF.53.1|g.71] -indexing [CUFF.39.1|g.72] -indexing [CUFF.13.2|g.48] -indexing [CUFF.17.1|g.3] -indexing [CUFF.29.1|g.39] -indexing [CUFF.3.1|g.80] -indexing [CUFF.13.1|g.47] -indexing [CUFF.38.1|g.26] -indexing [CUFF.11.1|g.25] -indexing [CUFF.48.1|g.90] -indexing [CUFF.15.1|g.40] -indexing [CUFF.51.1|g.81] -indexing [CUFF.41.1|g.9] Done! Coding region genome annotations provided as: best_candidates.eclipsed_orfs_removed.genome.gff3 make[1]: Leaving directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' fakeroot debian/rules binary dh binary --parallel dh_testroot -O--parallel dh_prep -O--parallel dh_auto_install -O--parallel debian/rules override_dh_install make[1]: Entering directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' dh_install find debian/transdecoder -name '*.p?' | xargs sed -i \ 's=^#!/usr/local/bin/perl=#!/usr/bin/perl=' make[1]: Leaving directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' dh_installdocs -O--parallel dh_installchangelogs -O--parallel debian/rules override_dh_installman make[1]: Entering directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' pod2man --section=1 --center="Transcriptome Protein Prediction" \ --release="$VERSION" TransDecoder.LongOrfs > \ debian/TransDecoder.LongOrfs.1 pod2man --section=1 --center="Transcriptome Protein Prediction" \ --release="$VERSION" TransDecoder.Predict > \ debian/TransDecoder.Predict.1 dh_installman make[1]: Leaving directory '/«BUILDDIR»/transdecoder-2.0.1+dfsg' dh_lintian -O--parallel dh_perl -O--parallel dh_link -O--parallel dh_strip_nondeterminism -O--parallel dh_compress -O--parallel dh_fixperms -O--parallel dh_installdeb -O--parallel dh_gencontrol -O--parallel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: dh_gencontrol debug symbol wrapper: packages to act on: dh_gencontrol debug symbol wrapper: ignored packages: dh_md5sums -O--parallel dh_builddeb -O--parallel INFO: pkgstriptranslations version 125 INFO: pkgstriptranslations version 125 pkgstriptranslations: processing transdecoder-doc (in debian/transdecoder-doc); do_strip: , oemstrip: pkgstriptranslations: processing transdecoder (in debian/transdecoder); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/transdecoder-doc/DEBIAN/control, package transdecoder-doc, directory debian/transdecoder-doc DEBUG: wait transdecoder-doc 2:transdecoder-doc INFO: pkgstripfiles: waiting for lock (transdecoder-doc) ... pkgstripfiles: processing control file: debian/transdecoder/DEBIAN/control, package transdecoder, directory debian/transdecoder DEBUG: wait transdecoder 1:transdecoder DEBUG: clear transdecoder 1:transdecoder DEBUG: done transdecoder pkgstripfiles: Running PNG optimization (using 4 cpus) for package transdecoder ... pkgstripfiles: No PNG files. dpkg-deb: building package 'transdecoder' in '../transdecoder_2.0.1+dfsg-2_all.deb'. DEBUG: loop transdecoder-doc 1:transdecoder-doc DEBUG: clear transdecoder-doc 1:transdecoder-doc DEBUG: done transdecoder-doc pkgstripfiles: Disabled PNG optimization for -doc package transdecoder-doc (to save build time) dpkg-deb: building package 'transdecoder-doc' in '../transdecoder-doc_2.0.1+dfsg-2_all.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../transdecoder_2.0.1+dfsg-2_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build transdecoder-2.0.1+dfsg dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151229-1110 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ transdecoder_2.0.1+dfsg-2_amd64.changes: ──────────────────────────────────────── Format: 1.8 Date: Mon, 28 Dec 2015 08:26:27 +0100 Source: transdecoder Binary: transdecoder transdecoder-doc Architecture: all Version: 2.0.1+dfsg-2 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: transdecoder - find coding regions within RNA transcript sequences transdecoder-doc - find coding regions within transcripts Closes: 809187 Changes: transdecoder (2.0.1+dfsg-2) unstable; urgency=medium . [ Andreas Tille ] * Slightly enhanced short description * Lintian override for false positive package-contains-timestamped-gzip * DEP3 headers . [ Charles Plessy ] * Make output reproducible. Closes: #809187 Checksums-Sha1: e9414a39c48dd632c4d30494a50fa3db561b7bfe 16711662 transdecoder-doc_2.0.1+dfsg-2_all.deb 707a1b2e69e8d761741fde2fa4d77b10f9a560e9 57042 transdecoder_2.0.1+dfsg-2_all.deb Checksums-Sha256: 7aad55b6d271469c5e962723ce0988c04ebaa66bf836c682f548b9674898a91b 16711662 transdecoder-doc_2.0.1+dfsg-2_all.deb ed9eca4cb925b50b7e2bd8151abbb2f5fef23c76c0da07ed6fc0aa45e004a26c 57042 transdecoder_2.0.1+dfsg-2_all.deb Files: ba71dbc107798137d2409c02c5a08e28 16711662 doc optional transdecoder-doc_2.0.1+dfsg-2_all.deb 3381e6a409c5d36ebed10f181556ad93 57042 science optional transdecoder_2.0.1+dfsg-2_all.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ transdecoder-doc_2.0.1+dfsg-2_all.deb ───────────────────────────────────── new debian package, version 2.0. size 16711662 bytes: control archive=2197 bytes. 1441 bytes, 31 lines control 4646 bytes, 45 lines md5sums Package: transdecoder-doc Source: transdecoder Version: 2.0.1+dfsg-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 56031 Depends: perl Section: doc Priority: optional Homepage: https://transdecoder.github.io/ Description: find coding regions within transcripts TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. . TransDecoder identifies likely coding sequences based on the following criteria: * a minimum length open reading frame (ORF) is found in a transcript sequence * a log-likelihood score similar to what is computed by the GeneID software is > 0. * the above coding score is greatest when the ORF is scored in the 1st reading frame as compared to scores in the other 5 reading frames. * if a candidate ORF is found fully encapsulated by the coordinates of another candidate ORF, the longer one is reported. However, a single transcript can report multiple ORFs (allowing for operons, chimeras, etc). * optional the putative peptide has a match to a Pfam domain above the noise cutoff score. . This package contains the documentation and sample data. drwxr-xr-x root/root 0 2015-12-29 11:09 ./ drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/ drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/lib/ drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/lib/transdecoder/ drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/ -rw-r--r-- root/root 5796 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/blastp.results.outfmt6 -rw-r--r-- root/root 1785 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/blastp.results.outfmt6.gz -rwxr-xr-x root/root 792 2015-02-13 11:31 ./usr/lib/transdecoder/sample_data/cleanme.pl -rw-r--r-- root/root 60047 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/pfam.domtblout -rw-r--r-- root/root 12823 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/pfam.domtblout.gz -rwxr-xr-x root/root 1904 2015-02-13 11:31 ./usr/lib/transdecoder/sample_data/runMe.sh -rw-r--r-- root/root 203475 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/test.genome.fasta -rw-r--r-- root/root 62343 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/test.genome.fasta.gz -rw-r--r-- root/root 45943452 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/test.tophat.sam -rw-r--r-- root/root 9125127 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/test.tophat.sam.gz -rw-r--r-- root/root 6291 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.bed -rw-r--r-- root/root 141630 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta -rw-r--r-- root/root 10742 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder.bed -rw-r--r-- root/root 98532 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder.cds -rw-r--r-- root/root 7654 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder.genome.bed -rw-r--r-- root/root 49215 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder.genome.gff3 -rw-r--r-- root/root 54224 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder.gff3 -rw-r--r-- root/root 251002 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder.mRNA -rw-r--r-- root/root 38951 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder.pep drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder_dir/ -rw-r--r-- root/root 56 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder_dir/base_freqs.dat -rw-r--r-- root/root 0 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder_dir/base_freqs.dat.ok -rw-r--r-- root/root 294344 2015-12-29 11:09 ./usr/lib/transdecoder/sample_data/transcripts.fasta.transdecoder_dir/hexamer.scores -rw-r--r-- root/root 0 2015-12-29 11:09 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./usr/share/lintian/overrides/ -rw-r--r-- root/root 568 2015-12-28 23:54 ./usr/share/lintian/overrides/transdecoder-doc transdecoder_2.0.1+dfsg-2_all.deb ───────────────────────────────── new debian package, version 2.0. size 57042 bytes: control archive=1990 bytes. 1391 bytes, 28 lines control 2550 bytes, 31 lines md5sums Package: transdecoder Version: 2.0.1+dfsg-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 274 Depends: perl, cd-hit, liburi-perl Section: science Priority: optional Homepage: https://transdecoder.github.io/ Description: find coding regions within RNA transcript sequences TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. . TransDecoder identifies likely coding sequences based on the following criteria: * a minimum length open reading frame (ORF) is found in a transcript sequence * a log-likelihood score similar to what is computed by the GeneID software is > 0. * the above coding score is greatest when the ORF is scored in the 1st reading frame as compared to scores in the other 5 reading frames. * if a candidate ORF is found fully encapsulated by the coordinates of another candidate ORF, the longer one is reported. However, a single transcript can report multiple ORFs (allowing for operons, chimeras, etc). * optional the putative peptide has a match to a Pfam domain above the noise cutoff score. drwxr-xr-x root/root 0 2015-12-29 11:09 ./ drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/ drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/bin/ lrwxrwxrwx root/root 0 2015-12-29 11:09 ./usr/bin/TransDecoder.LongOrfs -> ../lib/transdecoder/TransDecoder.LongOrfs lrwxrwxrwx root/root 0 2015-12-29 11:09 ./usr/bin/TransDecoder.Predict -> ../lib/transdecoder/TransDecoder.Predict drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/lib/ drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/lib/transdecoder/ drwxr-xr-x root/root 0 2015-12-29 11:09 ./usr/lib/transdecoder/PerlLib/ -rwxr-xr-x root/root 3473 2015-12-29 11:09 ./usr/lib/transdecoder/PerlLib/Fasta_reader.pm -rw-r--r-- root/root 8377 2015-12-29 11:09 ./usr/lib/transdecoder/PerlLib/GFF3_utils.pm -rwxr-xr-x root/root 142308 2015-12-29 11:09 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-rw-r--r-- root/root 2203 2015-12-29 11:09 ./usr/share/man/man1/TransDecoder.LongOrfs.1.gz -rw-r--r-- root/root 2187 2015-12-29 11:09 ./usr/share/man/man1/TransDecoder.Predict.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 129532 Build-Time: 62 Distribution: xenial-proposed Host Architecture: amd64 Install-Time: 10 Job: transdecoder_2.0.1+dfsg-2.dsc Machine Architecture: amd64 Package: transdecoder Package-Time: 73 Source-Version: 2.0.1+dfsg-2 Space: 129532 Status: successful Version: 2.0.1+dfsg-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151229-1110 Build needed 00:01:13, 129532k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8770297'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8770297/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8770297'] Unmounting chroot for build PACKAGEBUILD-8770297... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8770297'] Removing build PACKAGEBUILD-8770297