https://launchpad.net/ubuntu/+source/tree-puzzle/5.2-10build1/+build/14874523 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-020 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 May 15:09:13 ntpdate[1820]: adjust time server 10.211.37.1 offset 0.035611 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874523 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-14874523 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874523 Starting target for build PACKAGEBUILD-14874523 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874523 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14874523 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874523 Updating target for build PACKAGEBUILD-14874523 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1004 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8572 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4974 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [72.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [38.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [238 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [136 kB] Fetched 16.0 MB in 5s (3233 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 libmount1 libmpx2 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libquadmath0 libreadline7 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tzdata util-linux 73 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 49.5 MB of archives. After this operation, 1414 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-2ubuntu2 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 bsdutils i386 1:2.31.1-0.4ubuntu4 [62.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.1-2 [185 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.1-2 [428 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-2ubuntu2 [166 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libperl5.26 i386 5.26.2-3 [3182 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl i386 5.26.2-3 [201 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-base i386 5.26.2-3 [1495 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-2ubuntu2 [141 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libuuid1 i386 2.31.1-0.4ubuntu4 [20.6 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libblkid1 i386 2.31.1-0.4ubuntu4 [139 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libfdisk1 i386 2.31.1-0.4ubuntu4 [182 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmount1 i386 2.31.1-0.4ubuntu4 [149 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsmartcols1 i386 2.31.1-0.4ubuntu4 [91.8 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 fdisk i386 2.31.1-0.4ubuntu4 [116 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 util-linux i386 2.31.1-0.4ubuntu4 [929 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libquadmath0 i386 8.1.0-3ubuntu1 [208 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libitm1 i386 8.1.0-3ubuntu1 [30.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-8-base i386 8.1.0-3ubuntu1 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc1 i386 1:8.1.0-3ubuntu1 [48.1 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmpx2 i386 8.1.0-3ubuntu1 [12.9 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcc1-0 i386 8.1.0-3ubuntu1 [41.8 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libatomic1 i386 8.1.0-3ubuntu1 [9620 B] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgomp1 i386 8.1.0-3ubuntu1 [80.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++6 i386 8.1.0-3ubuntu1 [430 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~alpha0ubuntu1 [872 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~alpha0ubuntu1 [1195 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 mount i386 2.31.1-0.4ubuntu4 [112 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.1-2 [9684 B] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libgpg-error0 i386 1.31-1 [60.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.1-2 [11.6 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses5 i386 6.1+20180210-2ubuntu2 [101 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-2ubuntu2 [128 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-2ubuntu2 [79.7 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.10-2 [179 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps6 i386 2:3.3.12-3ubuntu2 [32.3 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-2ubuntu2 [108 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.12-3ubuntu2 [224 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-0 i386 0~20161029-2 [25.0 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsqlite3-0 i386 3.23.1-1 [536 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.30-17ubuntu1 [193 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.30-17ubuntu1 [3392 B] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.30-17ubuntu1 [2028 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.30-17ubuntu1 [544 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libasan4 i386 7.3.0-19ubuntu1 [361 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libubsan0 i386 7.3.0-19ubuntu1 [141 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcilkrts5 i386 7.3.0-19ubuntu1 [47.3 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 g++-7 i386 7.3.0-19ubuntu1 [7815 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7 i386 7.3.0-19ubuntu1 [7692 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++-7-dev i386 7.3.0-19ubuntu1 [1505 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc-7-dev i386 7.3.0-19ubuntu1 [2395 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp-7 i386 7.3.0-19ubuntu1 [6965 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7-base i386 7.3.0-19ubuntu1 [18.8 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:7.3.0-3ubuntu3 [27.6 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:7.3.0-3ubuntu3 [5268 B] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:7.3.0-3ubuntu3 [1596 B] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.1-2 [2704 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.1-2 [2692 B] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.15.0-21.22 [1007 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 pinentry-curses i386 1.1.0-1build1 [37.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.5 MB in 2s (20.7 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_i386.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_i386.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-2_i386.deb ... Unpacking libext2fs2:i386 (1.44.1-2) over (1.44.1-1) ... Setting up libext2fs2:i386 (1.44.1-2) ... (Reading database ... 12641 files and directories currently installed.) 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Unpacking libfdisk1:i386 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:i386 (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libmount1_2.31.1-0.4ubuntu4_i386.deb ... Unpacking libmount1:i386 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:i386 (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.31.1-0.4ubuntu4_i386.deb ... Unpacking libsmartcols1:i386 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:i386 (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../fdisk_2.31.1-0.4ubuntu4_i386.deb ... Unpacking fdisk (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) 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Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun May 13 15:09:42 UTC 2018. Universal Time is now: Sun May 13 15:09:42 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up linux-libc-dev:i386 (4.15.0-21.22) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up perl-modules-5.26 (5.26.2-3) ... Setting up libprocps6:i386 (2:3.3.12-3ubuntu2) ... Setting up libargon2-0:i386 (0~20161029-2) ... Setting up gcc-7-base:i386 (7.3.0-19ubuntu1) ... Setting up binutils-common:i386 (2.30-17ubuntu1) ... Setting up libmpx2:i386 (8.1.0-3ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:i386 (5.26.2-3) ... Setting up libsqlite3-0:i386 (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:i386 (1.44.1-2) ... Setting up libslang2:i386 (2.3.2-1ubuntu1) ... Setting up libncurses6:i386 (6.1+20180210-2ubuntu2) ... Setting up libusb-0.1-4:i386 (2:0.1.12-32) ... Setting up libitm1:i386 (8.1.0-3ubuntu1) ... Setting up libasan4:i386 (7.3.0-19ubuntu1) ... Setting up libbinutils:i386 (2.30-17ubuntu1) ... Setting up libcilkrts5:i386 (7.3.0-19ubuntu1) ... Setting up libubsan0:i386 (7.3.0-19ubuntu1) ... Setting up libgcc-7-dev:i386 (7.3.0-19ubuntu1) ... Setting up cpp-7 (7.3.0-19ubuntu1) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:i386 (7.3.0-19ubuntu1) ... Setting up perl (5.26.2-3) ... Setting up binutils-i686-linux-gnu (2.30-17ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-19ubuntu1) ... Setting up g++-7 (7.3.0-19ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14874523 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-14874523 --arch=i386 --dist=cosmic-proposed --nolog tree-puzzle_5.2-10build1.dsc Initiating build PACKAGEBUILD-14874523 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-020.buildd +==============================================================================+ | tree-puzzle 5.2-10build1 (i386) 13 May 2018 15:09 | +==============================================================================+ Package: tree-puzzle Version: 5.2-10build1 Source Version: 5.2-10build1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/tree-puzzle-3u2ueY/tree-puzzle-5.2' with '<>' I: NOTICE: Log filtering will replace 'build/tree-puzzle-3u2ueY' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14874523/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- tree-puzzle_5.2-10build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-g36Y5S/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-g36Y5S/apt_archive ./ InRelease Get:2 copy:/<>/resolver-g36Y5S/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-g36Y5S/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-g36Y5S/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-g36Y5S/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (236 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-g36Y5S/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), libopenmpi-dev, libsprng2-dev Filtered Build-Depends: debhelper (>= 10), libopenmpi-dev, libsprng2-dev dpkg-deb: building package 'sbuild-build-depends-tree-puzzle-dummy' in '/<>/resolver-AHTCeV/apt_archive/sbuild-build-depends-tree-puzzle-dummy.deb'. Ign:1 copy:/<>/resolver-AHTCeV/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AHTCeV/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-AHTCeV/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AHTCeV/apt_archive ./ Sources [231 B] Get:5 copy:/<>/resolver-AHTCeV/apt_archive ./ Packages [547 B] Fetched 2897 B in 0s (246 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install tree-puzzle build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcroco3 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 librdmacm1 libsigsegv2 libsprng2 libsprng2-dev libssl1.0.0 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff gmp-doc libgmp10-doc libmpfr-dev krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils libsprng2-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcroco3 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 librdmacm1 libsigsegv2 libsprng2 libsprng2-dev libssl1.0.0 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-tree-puzzle-dummy 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 25.2 MB of archives. After this operation, 96.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-AHTCeV/apt_archive ./ sbuild-build-depends-tree-puzzle-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.8.7-1 [44.7 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.3-2 [1028 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.33-2 [193 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.33-2 [76.6 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.33-2 [22.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.56.1-2ubuntu1 [1232 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-3ubuntu3 [8193 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libxml2 i386 2.9.4+dfsg1-6.1ubuntu1 [697 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-6build1 [51.3 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 libedit2 i386 3.1-20170329-1build1 [80.7 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5support0 i386 1.16-2build1 [32.8 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libk5crypto3 i386 1.16-2build1 [90.0 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libkeyutils1 i386 1.5.9-9.2ubuntu3 [8940 B] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-3 i386 1.16-2build1 [303 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi-krb5-2 i386 1.16-2build1 [132 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 libnuma1 i386 2.0.11-2.2 [23.8 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.0.0 i386 1.0.2n-1ubuntu5 [913 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 openssh-client i386 1:7.7p1-2 [680 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-6build1 [412 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libtool all 2.4.6-2.1 [195 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 17 [15.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.041-1 [5188 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-6build1 [902 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.2.1ubuntu1 [906 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-3-200 i386 3.2.29-0ubuntu3 [55.9 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-route-3-200 i386 3.2.29-0ubuntu3 [154 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libibverbs1 i386 18.0-1 [51.8 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 ibverbs-providers i386 18.0-1 [186 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-2.1-6 i386 2.1.8-stable-4build1 [146 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-core-2.1-6 i386 2.1.8-stable-4build1 [93.6 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-pthreads-2.1-6 i386 2.1.8-stable-4build1 [5408 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpsm-infinipath1 i386 3.3+20.604758e7-5 [182 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 librdmacm1 i386 18.0-1 [69.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfabric1 i386 1.5.3-1 [336 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmpxx4ldbl i386 2:6.1.2+dfsg-3 [9360 B] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp-dev i386 2:6.1.2+dfsg-3 [328 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libltdl7 i386 2.4.6-2.1 [40.5 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libltdl-dev i386 2.4.6-2.1 [164 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc5 i386 1.11.10-1 [115 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libpciaccess0 i386 0.14-1 [20.2 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 ocl-icd-libopencl1 i386 2.2.11-1ubuntu1 [31.3 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-plugins i386 1.11.10-1 [13.2 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpmix2 i386 2.1.1~rc1-4 [361 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libopenmpi3 i386 3.0.1.real-4 [2105 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsprng2 i386 2.0a-11 [80.7 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsprng2-dev i386 2.0a-11 [82.7 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 openmpi-common all 3.0.1.real-4 [143 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 openmpi-bin i386 3.0.1.real-4 [94.3 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libnuma-dev i386 2.0.11-2.2 [34.4 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-dev i386 1.11.10-1 [179 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libibverbs-dev i386 18.0-1 [114 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libopenmpi-dev i386 3.0.1.real-4 [821 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.2 MB in 1s (34.2 MB/s) Selecting previously unselected package libbsd0:i386. 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Setting up libsprng2 (2.0a-11) ... Setting up libnuma1:i386 (2.0.11-2.2) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:i386 (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:i386 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:i386 (0.8.7-1) ... Setting up libkrb5support0:i386 (1.16-2build1) ... Setting up libxml2:i386 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:i386 (1:5.33-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libevent-pthreads-2.1-6:i386 (2.1.8-stable-4build1) ... Setting up openmpi-common (3.0.1.real-4) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:i386 (2.4.6-2.1) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up libnuma-dev:i386 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:i386 (2.2.11-1ubuntu1) ... Setting up libkeyutils1:i386 (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:i386 (2:6.1.2+dfsg-3) ... Setting up libnl-3-200:i386 (3.2.29-0ubuntu3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libgmp-dev:i386 (2:6.1.2+dfsg-3) ... Setting up libk5crypto3:i386 (1.16-2build1) ... Setting up libltdl-dev:i386 (2.4.6-2.1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libnl-route-3-200:i386 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:i386 (1.11.10-1) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libsprng2-dev (2.0a-11) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:i386 (1.16-2build1) ... Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:i386 (18.0-1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:i386 (1.11.10-1) ... Setting up libpmix2:i386 (2.1.1~rc1-4) ... Setting up librdmacm1:i386 (18.0-1) ... Setting up libgssapi-krb5-2:i386 (1.16-2build1) ... Setting up ibverbs-providers:i386 (18.0-1) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libibverbs-dev:i386 (18.0-1) ... Setting up libfabric1 (1.5.3-1) ... Setting up libopenmpi3:i386 (3.0.1.real-4) ... Setting up openmpi-bin (3.0.1.real-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:i386 (3.0.1.real-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-tree-puzzle-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-124-generic amd64 (i686) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-19ubuntu1 gcc-7_7.3.0-19ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu1 linux-libc-dev_4.15.0-21.22 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-i686-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-19ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-19ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-19ubuntu1 gcc-7-base_7.3.0-19ubuntu1 gcc-8-base_8.1.0-3ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 ibverbs-providers_18.0-1 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-3ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-3ubuntu1 libcilkrts5_7.3.0-19ubuntu1 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20170329-1build1 libevent-2.1-6_2.1.8-stable-4build1 libevent-core-2.1-6_2.1.8-stable-4build1 libevent-pthreads-2.1-6_2.1.8-stable-4build1 libext2fs2_1.44.1-2 libfabric1_1.5.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-19ubuntu1 libgcc1_1:8.1.0-3ubuntu1 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp-dev_2:6.1.2+dfsg-3 libgmp10_2:6.1.2+dfsg-3 libgmpxx4ldbl_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-3ubuntu1 libgpg-error0_1.31-1 libgssapi-krb5-2_1.16-2build1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs-dev_18.0-1 libibverbs1_18.0-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-3ubuntu1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu3 libkmod2_24-1ubuntu3 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-3ubuntu1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libopenmpi-dev_3.0.1.real-4 libopenmpi3_3.0.1.real-4 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpmix2_2.1.1~rc1-4 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpsm-infinipath1_3.3+20.604758e7-5 libquadmath0_8.1.0-3ubuntu1 librdmacm1_18.0-1 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsprng2_2.0a-11 libsprng2-dev_2.0a-11 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu1 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-19ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-21.22 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.0.1.real-4 openmpi-common_3.0.1.real-4 openssh-client_1:7.7p1-2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tree-puzzle-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun May 13 15:06:53 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tree-puzzle_5.2-10build1.dsc dpkg-source: info: extracting tree-puzzle in tree-puzzle-5.2 dpkg-source: info: unpacking tree-puzzle_5.2.orig.tar.gz dpkg-source: info: unpacking tree-puzzle_5.2-10build1.debian.tar.xz dpkg-source: info: applying 20_no_copy_of_sprng.patch dpkg-source: info: applying tests-need-bash.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14874523 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14874523 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14874523 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package tree-puzzle dpkg-buildpackage: info: source version 5.2-10build1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build tree-puzzle-5.2 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --no-parallel dh_clean -O--no-parallel debian/rules build-arch dh build-arch --no-parallel dh_update_autotools_config -a -O--no-parallel dh_autoreconf -a -O--no-parallel configure.ac:27: warning: underquoted definition of AC_TEST_MPICC configure.ac:27: run info Automake 'Extending aclocal' configure.ac:27: or see http://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:11: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:11: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:17: installing './compile' src/Makefile.am:45: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' dh_auto_configure -a -O--no-parallel ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking whether gcc and cc understand -c and -o together... yes checking whether make sets $(MAKE)... (cached) yes checking for mpcc... no checking for hcc... no checking for mpicc... /usr/bin/mpicc checking for mpicc_lam... no checking for mpicc_mpich... no checking for cc... /usr/bin/cc checking whether /usr/bin/mpicc works as MPI compiler... yes checking whether /usr/bin/mpicc handles quotes correctly... yes checking whether gcc handles quotes correctly... yes checking for main in -lm... yes checking for main in -lsprng... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating data/Makefile config.status: creating tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a -O--no-parallel make -j1 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-am make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv gamma.o sgamma.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml1.c && mv ml1.o sml1.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml2.c && mv ml2.o sml2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./mlparam.c && mv mlparam.o smlparam.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model1.c && mv model1.o smodel1.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model2.c && mv model2.o smodel2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle1.c && mv puzzle1.o spuzzle1.o ./puzzle1.c: In function ‘readallquarts’: ./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "TREE-PUZZLE\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n\n", dummyversion); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "species: %d\n", &dummynspec); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "quartets: %lu\n", &dummynquart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n", dummyname); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function ‘setoptions’: ./puzzle1.c:718:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &locroot); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &fracinv); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Geta); ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numcats); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numclust); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &(Freqtpm[i])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &Numtrial); ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &lmqts); ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &outgroup); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &TSparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &YRparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &tstvf84); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ACrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_AGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ATrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_GTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle2.c && mv puzzle2.o spuzzle2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./pstep.c && mv pstep.o spstep.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./util.c && mv util.o sutil.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./consensus.c && mv consensus.o sconsensus.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treesort.c && mv treesort.o streesort.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treetest.c && mv treetest.o streetest.o gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o -lsprng -lm -o puzzle /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv gamma.o pgamma.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml1.c && mv ml1.o pml1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml2.c && mv ml2.o pml2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./mlparam.c && mv mlparam.o pmlparam.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model1.c && mv model1.o pmodel1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model2.c && mv model2.o pmodel2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle1.c && mv puzzle1.o ppuzzle1.o ./puzzle1.c: In function ‘readallquarts’: ./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "TREE-PUZZLE\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n\n", dummyversion); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "species: %d\n", &dummynspec); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "quartets: %lu\n", &dummynquart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n", dummyname); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function ‘setoptions’: ./puzzle1.c:718:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &locroot); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &fracinv); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Geta); ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numcats); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numclust); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &(Freqtpm[i])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &Numtrial); ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &lmqts); ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &outgroup); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &TSparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &YRparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &tstvf84); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ACrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_AGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ATrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_GTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle2.c && mv puzzle2.o ppuzzle2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./pstep.c && mv pstep.o ppstep.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./sched.c && mv sched.o psched.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./util.c && mv util.o putil.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./consensus.c && mv consensus.o pconsensus.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treesort.c && mv treesort.o ptreesort.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treetest.c && mv treetest.o ptreetest.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ppuzzle.c ./ppuzzle.c: In function ‘PP_Update_EEI’: ./ppuzzle.c:300:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:302:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:304:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:306:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(3, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_Final_Update’: ./ppuzzle.c:344:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(DMVector[0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:346:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:348:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(fracinv), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:350:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:352:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:354:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:356:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(6, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendSizes’: ./ppuzzle.c:722:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:723:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:725:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvSizes’: ./ppuzzle.c:800:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:801:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:803:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvData’: ./ppuzzle.c:892:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:894:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:896:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:898:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:900:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:902:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:904:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:906:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:908:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:910:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(iexp[0][0]), &(Dtypeaddr[9])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:912:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:914:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:916:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendData’: ./ppuzzle.c:987:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:989:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:991:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:993:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:995:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:997:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:999:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1001:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1003:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1005:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(iexp[0][0]), &(Dtypeaddr [9])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1007:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1009:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1011:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendQuart’: ./ppuzzle.c:1153:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1154:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1156:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvQuart’: ./ppuzzle.c:1204:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1205:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1207:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendQuartBlock’: ./ppuzzle.c:1371:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ulis, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1372:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1374:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c:1387:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(trueaddr, DtypeaddrRes); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1390:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(bq, (DtypeaddrRes + 1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1392:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvQuartBlock’: ./ppuzzle.c:1458:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ulis, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1459:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1461:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c:1489:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(trueaddr, DtypeaddrRes); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1494:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(bq, (DtypeaddrRes+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1495:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendAllQuarts’: ./ppuzzle.c:1640:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(quartetinfo[0]), Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1641:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvAllQuarts’: ./ppuzzle.c:1689:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(quartetinfo[0]), Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1690:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendSplitsBlock’: ./ppuzzle.c:1751:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(biparts[n][0][0]), &(Dtypeaddr[n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1757:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address((*pstptr).tree, &(Dtypeaddr[(int)blocksize + n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1767:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[((int)blocksize + pstnum)])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1769:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(((int)blocksize + pstnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvSplitsBlock’: ./ppuzzle.c:1846:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&((*bip)[n][0][0]), &(Dtypeaddr[n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1852:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstarr[n][0]), &(Dtypeaddr[(int)*blocksize + n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1857:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[(int)*blocksize + pstlistnum])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1859:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(((int)*blocksize + pstlistnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendDone’: ./ppuzzle.c:2056:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2057:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2059:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvDone’: ./ppuzzle.c:2176:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2177:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2179:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/i386-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now pgamma.o pml1.o pml2.o pmlparam.o pmodel1.o pmodel2.o ppuzzle1.o ppuzzle2.o ppstep.o psched.o putil.o pconsensus.o ptreesort.o ptreetest.o ppuzzle.o -lsprng -lm -o ppuzzle make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' Making all in data make[2]: Entering directory '/<>/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/data' Making all in tests make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' # unfortunately most tests are failing for the moment # the issue is documented in # debian/patches/patch_test_results.patch # and needs to be discussed with upstream dh_auto_test || true make -j1 check VERBOSE=1 make[2]: Entering directory '/<>' Making check in src make[3]: Entering directory '/<>/src' make[3]: Leaving directory '/<>/src' Making check in doc make[3]: Entering directory '/<>/doc' make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>/doc' make[3]: Leaving directory '/<>/doc' Making check in data make[3]: Entering directory '/<>/data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/data' Making check in tests make[3]: Entering directory '/<>/tests' make check-TESTS make[4]: Entering directory '/<>/tests' make[5]: Entering directory '/<>/tests' SKIP: build-puzzle FAIL: qp-pure-bin.test FAIL: qp-pure-nucl.test FAIL: qp-tn-nucl.test FAIL: qp-hky-clock-nucl.test FAIL: qp-hky-rhet-nucl.test FAIL: qp-hky-rhet-clock-nucl.test FAIL: qp-pure-prot.test FAIL: qp-mtrev-prot.test FAIL: qp-vt-prot.test FAIL: qp-wag-prot.test FAIL: qp-clock.test FAIL: qp-jtt-prot.test FAIL: qp-jtt-rhet-prot.test FAIL: qp-jtt-rhet-clock-prot.test FAIL: lm-pure-prot.test FAIL: ut-pure-prot.test FAIL: cons-pure-prot.test SKIP: build-remark ============================ : tests/test-suite.log ============================ # TOTAL: 19 # PASS: 0 # SKIP: 2 # XFAIL: 0 # FAIL: 17 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 SKIP: build-puzzle ================== SKIP build-puzzle (exit status: 77) FAIL: qp-pure-bin ================= Testing: binary data, quartet puzzling (qp-pure-bin) 171d170 < *...* : 1000 172a172 > *...* : 1000 FAIL qp-pure-bin.test (exit status: 1) FAIL: qp-pure-nucl ================== Testing: nucleotide data, default model, quartet puzzling (qp-pure-nucl) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); FAIL qp-pure-nucl.test (exit status: 1) FAIL: qp-tn-nucl ================ Testing: nucleotide data, TN, quartet puzzling (qp-tn-nucl) 24,25c24,25 < Transition/transversion parameter (estimated from data set): 1.24 (S.E. 0.31) < Y/R transition parameter (estimated from data set): 2.26 (S.E. 0.67) --- > Transition/transversion parameter (estimated from data set): 1.24 (S.E. 0.61) > Y/R transition parameter (estimated from data set): 2.27 (S.E. 0.65) 30c30 < A-G rate: 1.66 --- > A-G rate: 1.52641 33c33 < C-T rate: 3.43024 --- > C-T rate: 3.42338 44c44 < Expected pyrimidine transition/purine transition ratio: 6.67 --- > Expected pyrimidine transition/purine transition ratio: 6.69 102,116c102,116 < Thylacinus 0.00000 0.25971 0.22380 0.29 0.26623 0.25306 0.22613 < 0.24165 < Sarcophilu 0.25971 0.00000 0.13240 0.27379 0.28969 0.33127 0.26286 < 0.30174 < Dasyurus 0.22380 0.13240 0.00000 0.20329 0.25277 0.25436 0.17974 < 0.24238 < Echymipera 0.29 0.27379 0.20329 0.00000 0.30293 0.34436 0.23481 < 0.27776 < Trichosuru 0.26623 0.28969 0.25277 0.30293 0.00000 0.21416 0.29162 < 0.27785 < Phalanger 0.25306 0.33127 0.25436 0.34436 0.21416 0.00000 0.29431 < 0.33588 < Philander 0.22613 0.26286 0.17974 0.23481 0.29162 0.29431 0.00000 < 0.22751 < Bos 0.24165 0.30174 0.24238 0.27776 0.27785 0.33588 0.22751 --- > Thylacinus 0.00000 0.25968 0.22378 0.25026 0.26619 0.25302 0.22610 > 0.24162 > Sarcophilu 0.25968 0.00000 0.13240 0.27376 0.28965 0.33121 0.26282 > 0.30169 > Dasyurus 0.22378 0.13240 0.00000 0.20328 0.25274 0.25432 0.17972 > 0.24235 > Echymipera 0.25026 0.27376 0.20328 0.00000 0.30289 0.34430 0.23479 > 0.27773 > Trichosuru 0.26619 0.28965 0.25274 0.30289 0.00000 0.21414 0.29157 > 0.27782 > Phalanger 0.25302 0.33121 0.25432 0.34430 0.21414 0.00000 0.29425 > 0.33582 > Philander 0.22610 0.26282 0.17972 0.23479 0.29157 0.29425 0.00000 > 0.22749 > Bos 0.24162 0.30169 0.24235 0.27773 0.27782 0.33582 0.22749 119,121c119,121 < Average distance (over all possible pairs of sequences): 0.25880 < minimum : 0.13240, maximum : 0.34436 < variance : 0.00217, std.dev. : 0.04654 --- > Average distance (over all possible pairs of sequences): 0.25876 > minimum : 0.13240, maximum : 0.34430 > variance : 0.00217, std.dev. : 0.04653 186c186 < :-----93: --- > :-----94: 193,194c193,194 < :-67: :---Philander < : :-66: --- > :-63: :---Philander > : :-67: 204,205c204,205 < (Thylacinus,(Trichosuru,Phalanger)93,((Sarcophilu,Dasyurus)98, < (Philander,Bos)66,Echymipera)67); --- > (Thylacinus,(Trichosuru,Phalanger)94,((Sarcophilu,Dasyurus)98, > (Philander,Bos)67,Echymipera)63); 215,218c215,218 < *..***** : 981 < ****..** : 929 < *...**.. : 667 < ******.. : 655 --- > *..***** : 979 > ****..** : 935 > ******.. : 666 > *...**.. : 629 224c224 < *...**** : 399 --- > *...**** : 422 229,248c229,248 < ***.**.. : 267 < *..***.. : 153 < *...**.* : 142 < ***.**.* : 113 < *..*..** : 98 < ****..*. : 91 < *.....** : 71 < *....*.. : 69 < ****.... : 61 < *..*.... : 49 < ***.***. : 34 < *..***.* : 34 < ***..... : 32 < ***...** : 26 < *..*..*. : 25 < *.....*. : 24 < *......* : 21 < **..**** : 18 < *...***. : 15 < *..****. : 14 --- > ***.**.. : 271 > *..***.. : 132 > *...**.* : 122 > ***.**.* : 112 > *..*..** : 94 > *.....** : 88 > ****.... : 83 > ****..*. : 79 > *..*.... : 65 > *....*.. : 56 > *..***.* : 49 > ***.***. : 40 > ***..... : 36 > **..**** : 21 > *..*..*. : 21 > *.....*. : 20 > *......* : 19 > *...***. : 17 > ***...** : 13 > ****.**. : 7 250c250 < (3 other less frequent bipartitions not shown) --- > (9 other less frequent bipartitions not shown) 277,284c277,284 < Thylacinus 1 0.11472 0.03957 9 0.08 0.03454 < Sarcophilu 2 0.12891 0.03727 10 0.08144 0.03441 < Dasyurus 3 0.00945 0.01286 11 0.04411 0.02610 < Echymipera 4 0.14312 0.04217 12 0.09 0.03072 < Trichosuru 5 0.10849 0.03851 < Phalanger 6 0.12333 0.04129 < Philander 7 0.09009 0.03478 7 iterations until convergence < Bos 8 0.13725 0.04194 log L: -600.80 --- > Thylacinus 1 0.11472 0.03957 9 0.05924 0.03453 > Sarcophilu 2 0.12889 0.03726 10 0.08141 0.03441 > Dasyurus 3 0.00946 0.01286 11 0.04411 0.02610 > Echymipera 4 0.14312 0.04216 12 0.05429 0.03071 > Trichosuru 5 0.10849 0.03850 > Phalanger 6 0.12332 0.04128 > Philander 7 0.09008 0.03478 7 iterations until convergence > Bos 8 0.13724 0.04194 log L: -600.80 290,292c290,292 < (Thylacinus:0.11472,(Trichosuru:0.10849,Phalanger:0.12333)93:0.08, < ((Sarcophilu:0.12891,Dasyurus:0.00945)98:0.08144,(Philander:0.09009, < Bos:0.13725)66:0.04411,Echymipera:0.14312)67:0.09); --- > (Thylacinus:0.11472,(Trichosuru:0.10849,Phalanger:0.12332)94:0.05924, > ((Sarcophilu:0.12889,Dasyurus:0.00946)98:0.08141,(Philander:0.09008, > Bos:0.13724)67:0.04411,Echymipera:0.14312)63:0.05429); FAIL qp-tn-nucl.test (exit status: 1) FAIL: qp-hky-clock-nucl ======================= Testing: nucleotide data, HKY, clock, quartet puzzling (qp-hky-clock-nucl) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); 346,348c346,348 < (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)96:0.04504 < ,((Sarcophilu:0.06189,Dasyurus:0.06189)99:0.06663,(Philander:0.09549, < Bos:0.09549)66:0.03304,Echymipera:0.12852)70:0.01851):0.00001); --- > (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)97:0.04504 > ,((Sarcophilu:0.06189,Dasyurus:0.06189)98:0.06663,(Philander:0.09549, > Bos:0.09549)65:0.03304,Echymipera:0.12852)71:0.01851):0.00001); FAIL qp-hky-clock-nucl.test (exit status: 1) FAIL: qp-hky-rhet-nucl ====================== Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling (qp-hky-rhet-nucl) 24c24 < Transition/transversion parameter (estimated from data set): 2.96 (S.E. 0.79) --- > Transition/transversion parameter (estimated from data set): 2.95 (S.E. 0.84) 29c29 < A-G rate: 5.85940 --- > A-G rate: 5.85063 32c32 < C-T rate: 5.85940 --- > C-T rate: 5.85063 42c42 < Expected transition/transversion ratio: 3.15 --- > Expected transition/transversion ratio: 3.14 101,115c101,115 < Thylacinus 0.00000 0.52964 0.37914 0.62 0.58953 0.56181 0.43954 < 0.54 < Sarcophilu 0.52964 0.00000 0.17841 0.62563 0.69931 0.93650 0.62362 < 0.78638 < Dasyurus 0.37914 0.17841 0.00000 0.39052 0.53458 0.60404 0.31934 < 0.54 < Echymipera 0.62 0.62563 0.39052 0.00000 0.70261 0.94326 0.42032 < 0.66099 < Trichosuru 0.58953 0.69931 0.53458 0.70261 0.00000 0.39434 0.70054 < 0.62728 < Phalanger 0.56181 0.93650 0.60404 0.94326 0.39434 0.00000 0.78705 < 0.98976 < Philander 0.43954 0.62362 0.31934 0.42032 0.70054 0.78705 0.00000 < 0.49292 < Bos 0.54 0.78638 0.54 0.66099 0.62728 0.98976 0.49292 --- > Thylacinus 0.00000 0.52940 0.37900 0.52236 0.58922 0.56150 0.43932 > 0.55291 > Sarcophilu 0.52940 0.00000 0.17837 0.62532 0.69892 0.93602 0.62327 > 0.78596 > Dasyurus 0.37900 0.17837 0.00000 0.39032 0.53431 0.60369 0.31919 > 0.56220 > Echymipera 0.52236 0.62532 0.39032 0.00000 0.70229 0.94283 0.42016 > 0.66063 > Trichosuru 0.58922 0.69892 0.53431 0.70229 0.00000 0.39416 0.70017 > 0.62697 > Phalanger 0.56150 0.93602 0.60369 0.94283 0.39416 0.00000 0.78658 > 0.98921 > Philander 0.43932 0.62327 0.31919 0.42016 0.70017 0.78658 0.00000 > 0.49264 > Bos 0.55291 0.78596 0.56220 0.66063 0.62697 0.98921 0.49264 118,120c118,120 < Average distance (over all possible pairs of sequences): 0.59127 < minimum : 0.17841, maximum : 0.98976 < variance : 0.03586, std.dev. : 0.18936 --- > Average distance (over all possible pairs of sequences): 0.59096 > minimum : 0.17837, maximum : 0.98921 > variance : 0.03581, std.dev. : 0.18924 137,139c137,139 < 6 0.7769 0.1250 < 7 1.8181 0.1250 < 8 4.9545 0.1250 --- > 6 0.7768 0.1250 > 7 1.8180 0.1250 > 8 4.9547 0.1250 210c210 < :-92: --- > :-90: 214c214 < :-86: --- > :-87: 228c228 < (Thylacinus,(Sarcophilu,Dasyurus)92,(Trichosuru,Phalanger)86, --- > (Thylacinus,(Sarcophilu,Dasyurus)90,(Trichosuru,Phalanger)87, 239,240c239,240 < *..***** : 924 < ****..** : 855 --- > *..***** : 904 > ****..** : 872 246,248c246,247 < *...**.. : 387 < ******.. : 339 < *...**** : 213 --- > *...**.. : 377 > ******.. : 357 253,272c252,271 < ***.**.* : 209 < ***.**.. : 203 < ***.***. : 171 < *..*..** : 138 < *......* : 114 < *...**.* : 112 < *..***.. : 98 < *.....** : 96 < *..***.* : 94 < *..*.... : 93 < ***..... : 88 < *..****. : 78 < *...***. : 77 < ****..*. : 72 < ***...** : 66 < *....*.. : 62 < *.....*. : 61 < ****.... : 61 < ****...* : 45 < *..*..*. : 42 --- > ***.**.* : 220 > ***.**.. : 218 > *...**** : 205 > ***.***. : 145 > *......* : 135 > *..*..** : 129 > *...**.* : 124 > *.....** : 106 > *..*.... : 102 > *..***.* : 92 > *..***.. : 91 > ***..... : 86 > *.....*. : 71 > ***...** : 70 > *..****. : 67 > ****..*. : 67 > *....*.. : 64 > *...***. : 54 > ****.... : 52 > *..*...* : 47 274c273 < (47 other less frequent bipartitions not shown) --- > (49 other less frequent bipartitions not shown) 301,308c300,307 < Thylacinus 1 0.23378 0.10256 9 0.19945 0.09585 < Sarcophilu 2 0.18914 0.06717 10 0.22312 0.13106 < Dasyurus 3 0.00001 0.00218 < Echymipera 4 0.27860 0.11700 < Trichosuru 5 0.17836 0.10169 < Phalanger 6 0.27543 0.12625 < Philander 7 0.22553 0.10279 10 iterations until convergence < Bos 8 0.38546 0.14581 log L: -570.33 --- > Thylacinus 1 0.23363 0.10248 9 0.19927 0.09576 > Sarcophilu 2 0.18905 0.06712 10 0.22291 0.13093 > Dasyurus 3 0.00001 0.00200 > Echymipera 4 0.27841 0.11691 > Trichosuru 5 0.17822 0.10160 > Phalanger 6 0.27519 0.12613 > Philander 7 0.22533 0.10269 10 iterations until convergence > Bos 8 0.38507 0.14566 log L: -570.33 316,318c315,317 < (Thylacinus:0.23378,(Sarcophilu:0.18914,Dasyurus:0.00001)92:0.19945, < (Trichosuru:0.17836,Phalanger:0.27543)86:0.22312,Echymipera:0.27860, < Philander:0.22553,Bos:0.38546); --- > (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)90:0.19927, > (Trichosuru:0.17822,Phalanger:0.27519)87:0.22291,Echymipera:0.27841, > Philander:0.22533,Bos:0.38507); FAIL qp-hky-rhet-nucl.test (exit status: 1) FAIL: qp-hky-rhet-clock-nucl ============================ Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet puzzling (qp-hky-rhet-clock-nucl) 24c24 < Transition/transversion parameter (estimated from data set): 2.96 (S.E. 0.79) --- > Transition/transversion parameter (estimated from data set): 2.95 (S.E. 0.84) 29c29 < A-G rate: 5.85940 --- > A-G rate: 5.85063 32c32 < C-T rate: 5.85940 --- > C-T rate: 5.85063 42c42 < Expected transition/transversion ratio: 3.15 --- > Expected transition/transversion ratio: 3.14 101,115c101,115 < Thylacinus 0.00000 0.52964 0.37914 0.62 0.58953 0.56181 0.43954 < 0.54 < Sarcophilu 0.52964 0.00000 0.17841 0.62563 0.69931 0.93650 0.62362 < 0.78638 < Dasyurus 0.37914 0.17841 0.00000 0.39052 0.53458 0.60404 0.31934 < 0.54 < Echymipera 0.62 0.62563 0.39052 0.00000 0.70261 0.94326 0.42032 < 0.66099 < Trichosuru 0.58953 0.69931 0.53458 0.70261 0.00000 0.39434 0.70054 < 0.62728 < Phalanger 0.56181 0.93650 0.60404 0.94326 0.39434 0.00000 0.78705 < 0.98976 < Philander 0.43954 0.62362 0.31934 0.42032 0.70054 0.78705 0.00000 < 0.49292 < Bos 0.54 0.78638 0.54 0.66099 0.62728 0.98976 0.49292 --- > Thylacinus 0.00000 0.52940 0.37900 0.52236 0.58922 0.56150 0.43932 > 0.55291 > Sarcophilu 0.52940 0.00000 0.17837 0.62532 0.69892 0.93602 0.62327 > 0.78596 > Dasyurus 0.37900 0.17837 0.00000 0.39032 0.53431 0.60369 0.31919 > 0.56220 > Echymipera 0.52236 0.62532 0.39032 0.00000 0.70229 0.94283 0.42016 > 0.66063 > Trichosuru 0.58922 0.69892 0.53431 0.70229 0.00000 0.39416 0.70017 > 0.62697 > Phalanger 0.56150 0.93602 0.60369 0.94283 0.39416 0.00000 0.78658 > 0.98921 > Philander 0.43932 0.62327 0.31919 0.42016 0.70017 0.78658 0.00000 > 0.49264 > Bos 0.55291 0.78596 0.56220 0.66063 0.62697 0.98921 0.49264 118,120c118,120 < Average distance (over all possible pairs of sequences): 0.59127 < minimum : 0.17841, maximum : 0.98976 < variance : 0.03586, std.dev. : 0.18936 --- > Average distance (over all possible pairs of sequences): 0.59096 > minimum : 0.17837, maximum : 0.98921 > variance : 0.03581, std.dev. : 0.18924 137,139c137,139 < 6 0.7769 0.1250 < 7 1.8181 0.1250 < 8 4.9545 0.1250 --- > 6 0.7768 0.1250 > 7 1.8180 0.1250 > 8 4.9547 0.1250 210c210 < :-92: --- > :-90: 214c214 < :-86: --- > :-87: 228c228 < (Thylacinus,(Sarcophilu,Dasyurus)92,(Trichosuru,Phalanger)86, --- > (Thylacinus,(Sarcophilu,Dasyurus)90,(Trichosuru,Phalanger)87, 239,240c239,240 < *..***** : 924 < ****..** : 855 --- > *..***** : 904 > ****..** : 872 246,248c246,247 < *...**.. : 387 < ******.. : 339 < *...**** : 213 --- > *...**.. : 377 > ******.. : 357 253,272c252,271 < ***.**.* : 209 < ***.**.. : 203 < ***.***. : 171 < *..*..** : 138 < *......* : 114 < *...**.* : 112 < *..***.. : 98 < *.....** : 96 < *..***.* : 94 < *..*.... : 93 < ***..... : 88 < *..****. : 78 < *...***. : 77 < ****..*. : 72 < ***...** : 66 < *....*.. : 62 < *.....*. : 61 < ****.... : 61 < ****...* : 45 < *..*..*. : 42 --- > ***.**.* : 220 > ***.**.. : 218 > *...**** : 205 > ***.***. : 145 > *......* : 135 > *..*..** : 129 > *...**.* : 124 > *.....** : 106 > *..*.... : 102 > *..***.* : 92 > *..***.. : 91 > ***..... : 86 > *.....*. : 71 > ***...** : 70 > *..****. : 67 > ****..*. : 67 > *....*.. : 64 > *...***. : 54 > ****.... : 52 > *..*...* : 47 274c273 < (47 other less frequent bipartitions not shown) --- > (49 other less frequent bipartitions not shown) 301,308c300,307 < Thylacinus 1 0.23378 0.10256 9 0.19945 0.09585 < Sarcophilu 2 0.18914 0.06717 10 0.22312 0.13106 < Dasyurus 3 0.00001 0.00218 < Echymipera 4 0.27860 0.11700 < Trichosuru 5 0.17836 0.10169 < Phalanger 6 0.27543 0.12625 < Philander 7 0.22553 0.10279 10 iterations until convergence < Bos 8 0.38546 0.14581 log L: -570.33 --- > Thylacinus 1 0.23363 0.10248 9 0.19927 0.09576 > Sarcophilu 2 0.18905 0.06712 10 0.22291 0.13093 > Dasyurus 3 0.00001 0.00200 > Echymipera 4 0.27841 0.11691 > Trichosuru 5 0.17822 0.10160 > Phalanger 6 0.27519 0.12613 > Philander 7 0.22533 0.10269 10 iterations until convergence > Bos 8 0.38507 0.14566 log L: -570.33 316,318c315,317 < (Thylacinus:0.23378,(Sarcophilu:0.18914,Dasyurus:0.00001)92:0.19945, < (Trichosuru:0.17836,Phalanger:0.27543)86:0.22312,Echymipera:0.27860, < Philander:0.22553,Bos:0.38546); --- > (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)90:0.19927, > (Trichosuru:0.17822,Phalanger:0.27519)87:0.22291,Echymipera:0.27841, > Philander:0.22533,Bos:0.38507); 352,359c351,358 < Thylacinus 1 0.29799 0.785 9 0.20375 0.979 < Sarcophilu 2 0.09424 2.007 10 0.22867 0.976 < Dasyurus 3 0.09424 0.000 < Echymipera 4 0.29799 0.935 < Trichosuru 5 0.23491 0.759 < Phalanger 6 0.23491 1.173 < Philander 7 0.29799 0.757 16 iterations until convergence < Bos 8 0.29799 1.294 log L: -573.89 --- > Thylacinus 1 0.29776 0.785 9 0.20356 0.979 > Sarcophilu 2 0.09420 2.007 10 0.22846 0.976 > Dasyurus 3 0.09420 0.000 > Echymipera 4 0.29776 0.935 > Trichosuru 5 0.23472 0.759 > Phalanger 6 0.23472 1.172 > Philander 7 0.29776 0.757 16 iterations until convergence > Bos 8 0.29776 1.293 log L: -573.89 362,365c361,364 < 0.23491 0.07638 10 5 6 < 0.09424 0.03155 9 2 3 < 0.29799 0.05406 10 4 7 8 1 9 < 0.38079 0.07037 of root at branch 10 --- > 0.23472 0.07631 10 5 6 > 0.09420 0.03153 9 2 3 > 0.29776 0.05401 10 4 7 8 1 9 > 0.38047 0.07031 of root at branch 10 371,373c370,372 < ((Trichosuru:0.23491,Phalanger:0.23491)86:0.14588,(Echymipera:0.29799, < Philander:0.29799,Bos:0.29799,Thylacinus:0.29799,(Sarcophilu:0.09424, < Dasyurus:0.09424)92:0.20375):0.08279); --- > ((Trichosuru:0.23472,Phalanger:0.23472)87:0.14575,(Echymipera:0.29776, > Philander:0.29776,Bos:0.29776,Thylacinus:0.29776,(Sarcophilu:0.09420, > Dasyurus:0.09420)90:0.20356):0.08271); FAIL qp-hky-rhet-clock-nucl.test (exit status: 1) FAIL: qp-pure-prot ================== Testing: protein data, default model, quartet puzzling (qp-pure-prot) 177,185c177,185 < :---GLB5_PETMA < :-56: < :100: :---LGB2_LUPLU < : : < :100: :-------MYG_PHYCA < : : < : : :---HBA_HUMAN < : :----100: < : :---HBA_HORSE --- > :---HBA_HUMAN > :----100: > : :---HBA_HORSE > :100: > : : :---GLB5_PETMA > : : :-54: > : :100: :---LGB2_LUPLU > : : > : :-------MYG_PHYCA 194,195c194,195 < (HBB_HUMAN,(((GLB5_PETMA,LGB2_LUPLU)56,MYG_PHYCA)100,(HBA_HUMAN, < HBA_HORSE)100)100,HBB_HORSE); --- > (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,((GLB5_PETMA,LGB2_LUPLU)54, > MYG_PHYCA)100)100,HBB_HORSE); 205,206d204 < ****... : 1000 < **..*** : 1000 208c206,208 < *****.. : 563 --- > **..*** : 1000 > ****... : 1000 > *****.. : 544 219,220c219,220 < ****..* : 221 < ****.*. : 216 --- > ****.*. : 234 > ****..* : 222 229,233c229,231 < :------6 GLB5_PETMA < :---8 < : :----------------7 LGB2_LUPLU < :-----9 < : :-------------5 MYG_PHYCA --- > :-3 HBA_HUMAN > :----8 > : :-4 HBA_HORSE 235,237c233,237 < : : :-3 HBA_HUMAN < : :---10 < : :-4 HBA_HORSE --- > : : :------6 GLB5_PETMA > : : :---9 > : : : :----------------7 LGB2_LUPLU > : :----10 > : :-------------5 MYG_PHYCA 245,251c245,251 < HBB_HUMAN 1 0.04915 0.03158 8 0.18155 0.13086 < HBB_HORSE 2 0.12604 0.03871 9 0.34694 0.12 < HBA_HUMAN 3 0.02555 0.02185 10 0.28345 0.08777 < HBA_HORSE 4 0.09 0.03153 11 0.60239 0.11261 < MYG_PHYCA 5 1.33162 0.21116 < GLB5_PETMA 6 0.57465 0.13843 10 iterations until convergence < LGB2_LUPLU 7 1.71330 0.27644 log L: -1699.00 --- > HBB_HUMAN 1 0.04915 0.03158 8 0.28345 0.08777 > HBB_HORSE 2 0.12603 0.03871 9 0.18154 0.13086 > HBA_HUMAN 3 0.02555 0.02185 10 0.34694 0.12552 > HBA_HORSE 4 0.09542 0.03153 11 0.60239 0.11261 > MYG_PHYCA 5 1.33166 0.21117 > GLB5_PETMA 6 0.57466 0.13843 10 iterations until convergence > LGB2_LUPLU 7 1.71333 0.27645 log L: -1699.00 257,259c257,259 < (HBB_HUMAN:0.04915,(((GLB5_PETMA:0.57465,LGB2_LUPLU:1.71330)56:0.18155, < MYG_PHYCA:1.33162)100:0.34694,(HBA_HUMAN:0.02555,HBA_HORSE:0.09) < 100:0.28345)100:0.60239,HBB_HORSE:0.12604); --- > (HBB_HUMAN:0.04915,((HBA_HUMAN:0.02555,HBA_HORSE:0.09542)100:0.28345, > ((GLB5_PETMA:0.57466,LGB2_LUPLU:1.71333)54:0.18154,MYG_PHYCA:1.33166) > 100:0.34694)100:0.60239,HBB_HORSE:0.12603); FAIL qp-pure-prot.test (exit status: 1) FAIL: qp-mtrev-prot =================== Testing: protein data, mtREV, quartet puzzling (qp-mtrev-prot) 107c107 < HBA_HORSE 1.16856 1.20524 0.13144 0.00000 2.44163 1.55 3.05140 --- > HBA_HORSE 1.16856 1.20524 0.13144 0.00000 2.44163 1.55582 3.05140 109c109 < GLB5_PETMA 2.15305 2.18071 1.43785 1.55 2.62256 0.00000 2.97722 --- > GLB5_PETMA 2.15305 2.18071 1.43785 1.55582 2.62256 0.00000 2.97722 183c183 < : :-96:---GLB5_PETMA --- > : :-97:---GLB5_PETMA 194c194 < (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,(MYG_PHYCA,GLB5_PETMA,LGB2_LUPLU)96)100, --- > (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,(MYG_PHYCA,GLB5_PETMA,LGB2_LUPLU)97)100, 205d204 < **..*** : 1000 207c206,207 < ****... : 959 --- > **..*** : 1000 > ****... : 971 213c213 < *****.. : 444 --- > ****.*. : 462 218,221c218,222 < ****.*. : 442 < ****..* : 113 < **..*.. : 24 < **..*.* : 18 --- > *****.. : 436 > ****..* : 100 > **..*.* : 15 > **..*.. : 14 > **....* : 2 259c260 < (MYG_PHYCA:1.58550,GLB5_PETMA:0.88663,LGB2_LUPLU:2.13259)96:0.34149) --- > (MYG_PHYCA:1.58550,GLB5_PETMA:0.88663,LGB2_LUPLU:2.13259)97:0.34149) FAIL qp-mtrev-prot.test (exit status: 1) FAIL: qp-vt-prot ================ Testing: protein data, VT, quartet puzzling (qp-vt-prot) 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < ****..* : 365 --- > *****.. : 347 218,219c218,219 < *****.. : 324 < ****.*. : 311 --- > ****..* : 331 > ****.*. : 322 246c246 < HBA_HUMAN 3 0.03150 0.02213 10 0.96 0.10035 --- > HBA_HUMAN 3 0.03150 0.02213 10 0.54296 0.10035 257c257 < 100:0.42025,(HBA_HUMAN:0.03150,HBA_HORSE:0.08803)100:0.25241)100:0.96, --- > 100:0.42025,(HBA_HUMAN:0.03150,HBA_HORSE:0.08803)100:0.25241)100:0.54296, FAIL qp-vt-prot.test (exit status: 1) FAIL: qp-wag-prot ================= Testing: protein data, WAG, quartet puzzling (qp-wag-prot) 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < ****..* : 365 --- > *****.. : 347 218,219c218,219 < *****.. : 324 < ****.*. : 311 --- > ****..* : 331 > ****.*. : 322 244,245c244,245 < HBB_HUMAN 1 0.08 0.03102 8 0.44299 0.11946 < HBB_HORSE 2 0.11946 0.03741 9 0.25788 0.08204 --- > HBB_HUMAN 1 0.05028 0.03102 8 0.44299 0.11946 > HBB_HORSE 2 0.11946 0.03740 9 0.25788 0.08204 256c256 < (HBB_HUMAN:0.08,((MYG_PHYCA:1.11230,GLB5_PETMA:0.59340,LGB2_LUPLU:1.46501) --- > (HBB_HUMAN:0.05028,((MYG_PHYCA:1.11230,GLB5_PETMA:0.59340,LGB2_LUPLU:1.46501) FAIL qp-wag-prot.test (exit status: 1) FAIL: qp-clock ============== Testing: default data, default model, clock, quartet puzzling (qp-clock) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); 346,348c346,348 < (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)96:0.04504 < ,((Sarcophilu:0.06189,Dasyurus:0.06189)99:0.06663,(Philander:0.09549, < Bos:0.09549)66:0.03304,Echymipera:0.12852)70:0.01851):0.00001); --- > (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)97:0.04504 > ,((Sarcophilu:0.06189,Dasyurus:0.06189)98:0.06663,(Philander:0.09549, > Bos:0.09549)65:0.03304,Echymipera:0.12852)71:0.01851):0.00001); FAIL qp-clock.test (exit status: 1) FAIL: qp-jtt-prot ================= Testing: protein data, JTT, quartet puzzling (qp-jtt-prot) 106,107c106,107 < HBA_HUMAN 0.93732 0.97297 0.00000 0.12200 1.93956 1.26 2.51688 < HBA_HORSE 0.96340 0.97742 0.12200 0.00000 1.99570 1.34817 2.47 --- > HBA_HUMAN 0.93732 0.97297 0.00000 0.12200 1.93956 1.25126 2.51688 > HBA_HORSE 0.96340 0.97742 0.12200 0.00000 1.99570 1.34817 2.47562 109,110c109,110 < GLB5_PETMA 1.74159 1.75271 1.26 1.34817 2.04426 0.00000 2.23399 < LGB2_LUPLU 2.60857 2.65715 2.51688 2.47 2.69086 2.23399 0.00000 --- > GLB5_PETMA 1.74159 1.75271 1.25126 1.34817 2.04426 0.00000 2.23399 > LGB2_LUPLU 2.60857 2.65715 2.51688 2.47562 2.69086 2.23399 0.00000 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < *****.. : 396 --- > *****.. : 393 218,219c218,219 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 245c245 < HBB_HORSE 2 0.12734 0.03889 9 0.25371 0.08 --- > HBB_HORSE 2 0.12734 0.03889 9 0.25371 0.08572 FAIL qp-jtt-prot.test (exit status: 1) FAIL: qp-jtt-rhet-prot ====================== Testing: protein data, JTT, rate heterogeneity, quartet puzzling (qp-jtt-rhet-prot) 232d231 < **..*** : 1000 233a233 > **..*** : 1000 239c239 < *****.. : 396 --- > *****.. : 393 244,245c244,245 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 FAIL qp-jtt-rhet-prot.test (exit status: 1) FAIL: qp-jtt-rhet-clock-prot ============================ Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling (qp-jtt-rhet-clock-prot) 232d231 < **..*** : 1000 233a233 > **..*** : 1000 239c239 < *****.. : 396 --- > *****.. : 393 244,245c244,245 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 316c316 < HBB_HUMAN 1 0.08775 0. 8 0.58020 0.874 --- > HBB_HUMAN 1 0.08775 0.562 8 0.58020 0.874 FAIL qp-jtt-rhet-clock-prot.test (exit status: 1) FAIL: lm-pure-prot ================== Testing: protein data, default model, likelihood mapping (lm-pure-prot) 148c148 < Number of quartets in region 1: 17 (= 48.6%) --- > Number of quartets in region 1: 14 (= 40.0%) 150c150 < Number of quartets in region 3: 7 (= 20.0%) --- > Number of quartets in region 3: 10 (= 28.6%) 165,167c165,167 < Number of quartets in region 1: 16 (= 45.7%) left: 7 right: 9 < Number of quartets in region 2: 9 (= 25.7%) bottom: 3 top: 6 < Number of quartets in region 3: 7 (= 20.0%) bottom: 2 top: 5 --- > Number of quartets in region 1: 12 (= 34.3%) left: 3 right: 9 > Number of quartets in region 2: 11 (= 31.4%) bottom: 3 top: 8 > Number of quartets in region 3: 9 (= 25.7%) bottom: 4 top: 5 FAIL lm-pure-prot.test (exit status: 1) FAIL: ut-pure-prot ================== Testing: protein data, default model, user tree evaluation (ut-pure-prot) 151,152c151,152 < HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00078 < HBA_HUMAN 3 0.02653 0.02208 10 0.40361 0.12823 --- > HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00141 > HBA_HUMAN 3 0.02653 0.02208 10 0.40361 0.12824 156c156 < LGB2_LUPLU 7 1.76830 0.28197 log L: -1699.50 --- > LGB2_LUPLU 7 1.76830 0.28198 log L: -1699.50 192,193c192,193 < HBB_HORSE 2 0.12604 0.03871 9 0.18149 0.13086 < HBA_HUMAN 3 0.02555 0.02185 10 0.34695 0.12 --- > HBB_HORSE 2 0.12604 0.03871 9 0.18149 0.13088 > HBA_HUMAN 3 0.02555 0.02185 10 0.34695 0.12552 196c196 < GLB5_PETMA 6 0.57473 0.13844 9 iterations until convergence --- > GLB5_PETMA 6 0.57473 0.13845 9 iterations until convergence 231c231 < HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15659 --- > HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15661 289,292c289,292 < 1 -1699.50 0.49 1.0266 0.3220 + 0.4870 + 0.1918 + + < 2 -1699.00 0.00 <---- best 1.0000 + 1.0000 + 0.3601 + best < 3 -1699.32 0.32 1.3440 0.3930 + 0.4610 + 0.2563 + + < 4 -1699.50 0.49 1.0267 0.2960 + 0.4870 + 0.1918 + + --- > 1 -1699.50 0.49 1.0266 0.3020 + 0.4700 + 0.1881 + + > 2 -1699.00 0.00 <---- best 1.0000 + 1.0000 + 0.3650 + best > 3 -1699.32 0.32 1.3440 0.4030 + 0.4690 + 0.2588 + + > 4 -1699.50 0.49 1.0267 0.3070 + 0.4700 + 0.1881 + + FAIL ut-pure-prot.test (exit status: 1) FAIL: cons-pure-prot ==================== Testing: protein data, default model, consensus construction (cons-pure-prot) 203c203 < HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08745 --- > HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08746 FAIL cons-pure-prot.test (exit status: 1) SKIP: build-remark ================== *** *** !!! Important remark !!! *** *** Please note that only the output file *.puzzle is checked *** for identity. The overall precision reached in the program *** is heavily dependent on the compiler as well as the optimization *** level (-O) used to compile the executable. *** Hence, even if tests are marked as failed this might just be *** due to differences in less significant digits caused by rounding *** errors from less acurate computations for the sake of faster *** running times. (If you want to be sure about this please refer *** to your compiler's manual!) *** *** Please check the output file differences which are printed during the tests. *** The template files which the results are checked against have been *** generated with TREE-PUZZLE 5.2 compiled with GCC version 3.3-20030226 *** and default compiler flags '-g -O2' and using the SPRNG random number *** generator. *** SKIP build-remark (exit status: 77) ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 19 # PASS: 0 # SKIP: 2 # XFAIL: 0 # FAIL: 17 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log ============================================================================ Makefile:563: recipe for target 'test-suite.log' failed make[5]: *** [test-suite.log] Error 1 make[5]: Leaving directory '/<>/tests' Makefile:669: recipe for target 'check-TESTS' failed make[4]: *** [check-TESTS] Error 2 make[4]: Leaving directory '/<>/tests' Makefile:749: recipe for target 'check-am' failed make[3]: *** [check-am] Error 2 make[3]: Leaving directory '/<>/tests' Makefile:380: recipe for target 'check-recursive' failed make[2]: *** [check-recursive] Error 1 make[2]: Leaving directory '/<>' dh_auto_test: make -j1 check VERBOSE=1 returned exit code 2 make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --no-parallel dh_testroot -a -O--no-parallel dh_prep -a -O--no-parallel dh_installdirs -a -O--no-parallel dh_auto_install -a -O--no-parallel make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c puzzle ppuzzle '/<>/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/doc' make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' Making install in data make[2]: Entering directory '/<>/data' make[3]: Entering directory '/<>/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/data' make[2]: Leaving directory '/<>/data' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a # The binary has to be renamed because of the generic name mv `pwd`/debian/tmp/usr/bin/puzzle `pwd`/debian/tree-puzzle/usr/bin/tree-puzzle mv `pwd`/debian/tmp/usr/bin/ppuzzle `pwd`/debian/tree-ppuzzle/usr/bin/tree-ppuzzle make[1]: Leaving directory '/<>' dh_installdocs -a -O--no-parallel dh_installchangelogs -a -O--no-parallel dh_installexamples -a -O--no-parallel dh_installman -a -O--no-parallel dh_installmenu -a -O--no-parallel dh_perl -a -O--no-parallel dh_link -a -O--no-parallel dh_strip_nondeterminism -a -O--no-parallel debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf --exclude .phy --exclude trees --exclude .b make[1]: Leaving directory '/<>' dh_fixperms -a -O--no-parallel dh_missing -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -a -O--no-parallel dh_gencontrol -a -O--no-parallel dh_md5sums -a -O--no-parallel dh_builddeb -a -O--no-parallel INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing tree-puzzle-dbgsym (in debian/.debhelper/tree-puzzle/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing tree-ppuzzle (in debian/tree-ppuzzle); do_strip: , oemstrip: pkgstriptranslations: processing tree-ppuzzle-dbgsym (in debian/.debhelper/tree-ppuzzle/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing tree-puzzle (in debian/tree-puzzle); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/tree-puzzle/dbgsym-root/DEBIAN/control, package tree-puzzle-dbgsym, directory debian/.debhelper/tree-puzzle/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-puzzle-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-puzzle-dbgsym' in 'debian/.debhelper/scratch-space/build-tree-puzzle/tree-puzzle-dbgsym_5.2-10build1_i386.deb'. pkgstripfiles: processing control file: debian/tree-ppuzzle/DEBIAN/control, package tree-ppuzzle, directory debian/tree-ppuzzle INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... pkgstripfiles: processing control file: debian/tree-puzzle/DEBIAN/control, package tree-puzzle, directory debian/tree-puzzle pkgstripfiles: Truncating usr/share/doc/tree-puzzle/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-puzzle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-puzzle' in '../tree-puzzle_5.2-10build1_i386.deb'. Renaming tree-puzzle-dbgsym_5.2-10build1_i386.deb to tree-puzzle-dbgsym_5.2-10build1_i386.ddeb pkgstripfiles: Truncating usr/share/doc/tree-ppuzzle/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-ppuzzle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-ppuzzle' in '../tree-ppuzzle_5.2-10build1_i386.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/tree-ppuzzle/dbgsym-root/DEBIAN/control, package tree-ppuzzle-dbgsym, directory debian/.debhelper/tree-ppuzzle/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-ppuzzle-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-ppuzzle-dbgsym' in 'debian/.debhelper/scratch-space/build-tree-ppuzzle/tree-ppuzzle-dbgsym_5.2-10build1_i386.deb'. Renaming tree-ppuzzle-dbgsym_5.2-10build1_i386.deb to tree-ppuzzle-dbgsym_5.2-10build1_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../tree-puzzle_5.2-10build1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build tree-puzzle-5.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180513-1510 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tree-puzzle_5.2-10build1_i386.changes: -------------------------------------- Format: 1.8 Date: Sun, 13 May 2018 15:06:08 +0000 Source: tree-puzzle Binary: tree-puzzle tree-ppuzzle tree-puzzle-doc Architecture: i386 Version: 5.2-10build1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: tree-ppuzzle - Parallelized reconstruction of phylogenetic trees by maximum like tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood tree-puzzle-doc - Reconstruction of phylogenetic trees by maximum likelihood (doc) Changes: tree-puzzle (5.2-10build1) cosmic; urgency=medium . * No-change rebuild for dune openmpi soname change. Checksums-Sha1: 27e237c810bacbeaf6251863bc8c1373cea6d226 212384 tree-ppuzzle-dbgsym_5.2-10build1_i386.ddeb 14a6c60fd4263c09ab1b4f6e90c3ea6caede8ec8 147172 tree-ppuzzle_5.2-10build1_i386.deb c138163278a5f56704abe8ca1eb79123e73984bb 175016 tree-puzzle-dbgsym_5.2-10build1_i386.ddeb 2eaa617a5af526905ba5e476e3e3143cd52bbedb 7008 tree-puzzle_5.2-10build1_i386.buildinfo 2698381095b01151861f616947c171fff2b949ea 129992 tree-puzzle_5.2-10build1_i386.deb Checksums-Sha256: b58e9ade06f02d81507fb0a4d0bfffadef98bae47cfd34e4bab4424115777148 212384 tree-ppuzzle-dbgsym_5.2-10build1_i386.ddeb 03138f1d3a0408d7e7613d82c2dfa0edbe288b36a8f72e4483c3f7584eb77072 147172 tree-ppuzzle_5.2-10build1_i386.deb fe458021835d70f1222170c4a103ae21be64a42d8bd66bfd88f2ba7b3b30ca89 175016 tree-puzzle-dbgsym_5.2-10build1_i386.ddeb d63c6eb26ae8d2673b424d972cd3aa087d2807125a084607b526716e6edb0763 7008 tree-puzzle_5.2-10build1_i386.buildinfo 8db9d06f935dc16e917a1c35d8339396f9add24cd4e8e7c998dda12e6766aafa 129992 tree-puzzle_5.2-10build1_i386.deb Files: 93bad2a807603a34cd4aeb3ea688ad0e 212384 debug optional tree-ppuzzle-dbgsym_5.2-10build1_i386.ddeb beaef5de5ffd9f8ba4db03513c16f1bb 147172 science optional tree-ppuzzle_5.2-10build1_i386.deb bee164e3f36d5573ab773b1ef6a88173 175016 debug optional tree-puzzle-dbgsym_5.2-10build1_i386.ddeb 111e499921442cd91152cd746fa7c899 7008 science optional tree-puzzle_5.2-10build1_i386.buildinfo 0116b357130b305bcbc841f051df56b6 129992 science optional tree-puzzle_5.2-10build1_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tree-ppuzzle_5.2-10build1_i386.deb ---------------------------------- new debian package, version 2.0. size 147172 bytes: control archive=1452 bytes. 1265 bytes, 26 lines control 621 bytes, 9 lines md5sums 199 bytes, 7 lines * postinst #!/bin/sh 174 bytes, 5 lines * postrm #!/bin/sh Package: tree-ppuzzle Source: tree-puzzle Version: 5.2-10build1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 373 Depends: libc6 (>= 2.7), libopenmpi3, libsprng2, openmpi-bin Recommends: tree-puzzle-doc Suggests: phylip, treetool Section: science Priority: optional Homepage: http://www.tree-puzzle.de Description: Parallelized reconstruction of phylogenetic trees by maximum likelihood TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. . This is the parallelized version of tree-puzzle. drwxr-xr-x root/root 0 2018-05-13 15:06 ./ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/bin/ -rwxr-xr-x root/root 353640 2018-05-13 15:06 ./usr/bin/tree-ppuzzle drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/doc/tree-ppuzzle/ -rw-r--r-- root/root 1063 2002-08-05 00:45 ./usr/share/doc/tree-ppuzzle/AUTHORS -rw-r--r-- root/root 1558 2004-07-01 02:39 ./usr/share/doc/tree-ppuzzle/README -rw-r--r-- root/root 411 2017-10-13 05:48 ./usr/share/doc/tree-ppuzzle/README.Debian -rw-r--r-- root/root 1664 2018-05-13 15:06 ./usr/share/doc/tree-ppuzzle/changelog.Debian.gz -rw-r--r-- root/root 1289 2017-10-13 05:48 ./usr/share/doc/tree-ppuzzle/copyright drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/man/man1/ -rw-r--r-- root/root 804 2018-05-13 15:06 ./usr/share/man/man1/tree-ppuzzle.1.gz drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/menu/ -rw-r--r-- root/root 276 2017-10-13 05:48 ./usr/share/menu/tree-ppuzzle drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/pixmaps/ -rw-r--r-- root/root 1292 2017-10-13 05:48 ./usr/share/pixmaps/tree-ppuzzle.xpm tree-puzzle_5.2-10build1_i386.deb --------------------------------- new debian package, version 2.0. size 129992 bytes: control archive=1408 bytes. 1152 bytes, 23 lines control 612 bytes, 9 lines md5sums 199 bytes, 7 lines * postinst #!/bin/sh 174 bytes, 5 lines * postrm #!/bin/sh Package: tree-puzzle Version: 5.2-10build1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 329 Depends: libc6 (>= 2.7), libsprng2 Recommends: tree-puzzle-doc Suggests: phylip, treetool Section: science Priority: optional Homepage: http://www.tree-puzzle.de Description: Reconstruction of phylogenetic trees by maximum likelihood TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. drwxr-xr-x root/root 0 2018-05-13 15:06 ./ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/bin/ -rwxr-xr-x root/root 308584 2018-05-13 15:06 ./usr/bin/tree-puzzle drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/doc/tree-puzzle/ -rw-r--r-- root/root 1063 2002-08-05 00:45 ./usr/share/doc/tree-puzzle/AUTHORS -rw-r--r-- root/root 1558 2004-07-01 02:39 ./usr/share/doc/tree-puzzle/README -rw-r--r-- root/root 411 2017-10-13 05:48 ./usr/share/doc/tree-puzzle/README.Debian -rw-r--r-- root/root 1664 2018-05-13 15:06 ./usr/share/doc/tree-puzzle/changelog.Debian.gz -rw-r--r-- root/root 1289 2017-10-13 05:48 ./usr/share/doc/tree-puzzle/copyright drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/man/man1/ -rw-r--r-- root/root 798 2018-05-13 15:06 ./usr/share/man/man1/tree-puzzle.1.gz drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/menu/ -rw-r--r-- root/root 245 2017-10-13 05:48 ./usr/share/menu/tree-puzzle drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/pixmaps/ -rw-r--r-- root/root 1286 2017-10-13 05:48 ./usr/share/pixmaps/tree-puzzle.xpm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 12188 Build-Time: 44 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 14 Job: tree-puzzle_5.2-10build1.dsc Machine Architecture: amd64 Package: tree-puzzle Package-Time: 58 Source-Version: 5.2-10build1 Space: 12188 Status: successful Version: 5.2-10build1 -------------------------------------------------------------------------------- Finished at 20180513-1510 Build needed 00:00:58, 12188k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874523 Scanning for processes to kill in build PACKAGEBUILD-14874523 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874523 Stopping target for build PACKAGEBUILD-14874523 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874523 Removing build PACKAGEBUILD-14874523