https://launchpad.net/ubuntu/+source/tree-puzzle/5.2-10build1/+build/14874525 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-017 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:02:02 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 May 15:09:29 ntpdate[1780]: adjust time server 10.211.37.1 offset 0.000592 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14874525 /home/buildd/filecache-default/17124f3eec304530bbb077109f97da7d4ad52147 Creating target for build PACKAGEBUILD-14874525 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14874525 Starting target for build PACKAGEBUILD-14874525 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14874525 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14874525 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14874525 Updating target for build PACKAGEBUILD-14874525 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x Packages [940 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe s390x Packages [8218 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4974 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x Packages [62.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [38.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x Packages [226 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [136 kB] Fetched 15.6 MB in 3s (4708 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 libmount1 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libreadline7 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tar tzdata util-linux 71 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 40.8 MB of archives. After this operation, 1487 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main s390x base-files s390x 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo6 s390x 6.1+20180210-2ubuntu2 [80.5 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x bash s390x 4.4.18-2ubuntu2 [583 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x bsdutils s390x 1:2.31.1-0.4ubuntu4 [58.0 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x tar s390x 1.30+dfsg-1 [229 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x dpkg s390x 1.19.0.5ubuntu3 [1121 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x libext2fs2 s390x 1.44.1-2 [154 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x e2fsprogs s390x 1.44.1-2 [369 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-bin s390x 6.1+20180210-2ubuntu2 [159 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libperl5.26 s390x 5.26.2-3 [3374 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x perl s390x 5.26.2-3 [201 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x perl-base s390x 5.26.2-3 [1309 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw6 s390x 6.1+20180210-2ubuntu2 [120 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libuuid1 s390x 2.31.1-0.4ubuntu4 [20.0 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libblkid1 s390x 2.31.1-0.4ubuntu4 [117 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libfdisk1 s390x 2.31.1-0.4ubuntu4 [152 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libmount1 s390x 2.31.1-0.4ubuntu4 [126 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsmartcols1 s390x 2.31.1-0.4ubuntu4 [79.2 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x fdisk s390x 2.31.1-0.4ubuntu4 [103 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x util-linux s390x 2.31.1-0.4ubuntu4 [867 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x base-passwd s390x 3.5.45 [46.4 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgomp1 s390x 8.1.0-3ubuntu1 [69.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libitm1 s390x 8.1.0-3ubuntu1 [26.9 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-8-base s390x 8.1.0-3ubuntu1 [18.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgcc1 s390x 1:8.1.0-3ubuntu1 [25.1 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcc1-0 s390x 8.1.0-3ubuntu1 [37.2 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libatomic1 s390x 8.1.0-3ubuntu1 [8412 B] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libstdc++6 s390x 8.1.0-3ubuntu1 [398 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main s390x libapt-pkg5.0 s390x 1.7.0~alpha0ubuntu1 [745 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main s390x apt s390x 1.7.0~alpha0ubuntu1 [1130 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x mount s390x 2.31.1-0.4ubuntu4 [103 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x libcap-ng0 s390x 0.7.9-1 [11.0 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x libcom-err2 s390x 1.44.1-2 [9288 B] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x libgpg-error0 s390x 1.31-1 [53.1 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x libss2 s390x 1.44.1-2 [10.7 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses5 s390x 6.1+20180210-2ubuntu2 [89.0 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw5 s390x 6.1+20180210-2ubuntu2 [108 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo5 s390x 6.1+20180210-2ubuntu2 [76.2 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main s390x libgmp10 s390x 2:6.1.2+dfsg-3 [225 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x libp11-kit0 s390x 0.23.10-2 [188 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x libprocps6 s390x 2:3.3.12-3ubuntu2 [30.1 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses6 s390x 6.1+20180210-2ubuntu2 [94.3 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main s390x procps s390x 2:3.3.12-3ubuntu2 [215 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x libargon2-0 s390x 0~20161029-2 [35.6 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x readline-common all 7.0-5 [52.2 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main s390x libreadline7 s390x 7.0-5 [117 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main s390x libslang2 s390x 2.3.2-1ubuntu1 [417 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsqlite3-0 s390x 3.23.1-1 [468 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x tzdata all 2018e-1 [188 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x libbinutils s390x 2.30-17ubuntu1 [305 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-common s390x 2.30-17ubuntu1 [193 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils s390x 2.30-17ubuntu1 [3324 B] Get:55 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-s390x-linux-gnu s390x 2.30-17ubuntu1 [1722 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libasan4 s390x 7.3.0-19ubuntu1 [318 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libubsan0 s390x 7.3.0-19ubuntu1 [120 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x g++-7 s390x 7.3.0-19ubuntu1 [5989 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-7 s390x 7.3.0-19ubuntu1 [5886 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libstdc++-7-dev s390x 7.3.0-19ubuntu1 [1454 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgcc-7-dev s390x 7.3.0-19ubuntu1 [643 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x cpp-7 s390x 7.3.0-19ubuntu1 [5185 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-7-base s390x 7.3.0-19ubuntu1 [18.9 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main s390x cpp s390x 4:7.3.0-3ubuntu3 [27.5 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc s390x 4:7.3.0-3ubuntu3 [5204 B] Get:66 http://ftpmaster.internal/ubuntu cosmic/main s390x g++ s390x 4:7.3.0-3ubuntu3 [1592 B] Get:67 http://ftpmaster.internal/ubuntu cosmic/main s390x dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main s390x libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main s390x build-essential s390x 12.5ubuntu2 [4740 B] Get:70 http://ftpmaster.internal/ubuntu cosmic/main s390x e2fslibs s390x 1.44.1-2 [2704 B] Get:71 http://ftpmaster.internal/ubuntu cosmic/main s390x libcomerr2 s390x 1.44.1-2 [2692 B] Get:72 http://ftpmaster.internal/ubuntu cosmic/main s390x libusb-0.1-4 s390x 2:0.1.12-32 [16.5 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x linux-libc-dev s390x 4.15.0-21.22 [1002 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x pinentry-curses s390x 1.1.0-1build1 [34.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.8 MB in 1s (29.6 MB/s) (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_s390x.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:s390x. (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_s390x.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_s390x.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-1_s390x.deb ... Unpacking tar (1.30+dfsg-1) over (1.29b-2) ... Setting up tar (1.30+dfsg-1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_s390x.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-2_s390x.deb ... Unpacking libext2fs2:s390x (1.44.1-2) over (1.44.1-1) ... Setting up libext2fs2:s390x (1.44.1-2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.1-2_s390x.deb ... Unpacking e2fsprogs (1.44.1-2) over (1.44.1-1) ... Setting up e2fsprogs (1.44.1-2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking ncurses-bin (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-2ubuntu2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-3_s390x.deb ... Unpacking perl (5.26.2-3) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-3_all.deb ... Unpacking perl-modules-5.26 (5.26.2-3) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-3_s390x.deb ... Unpacking libperl5.26:s390x (5.26.2-3) over (5.26.1-6) ... Preparing to unpack .../perl-base_5.26.2-3_s390x.deb ... Unpacking perl-base (5.26.2-3) over (5.26.1-6) ... Setting up perl-base (5.26.2-3) ... Selecting previously unselected package libncursesw6:s390x. (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncursesw6:s390x (6.1+20180210-2ubuntu2) ... Setting up libncursesw6:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libuuid1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libuuid1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libblkid1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libblkid1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libfdisk1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libmount1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libmount1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libsmartcols1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../fdisk_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking fdisk (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../util-linux_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking util-linux (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up util-linux (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.45_s390x.deb ... Unpacking base-passwd (3.5.45) over (3.5.44) ... Setting up base-passwd (3.5.45) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20180210-2ubuntu2_all.deb ... Unpacking ncurses-base (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-base (6.1+20180210-2ubuntu2) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libgomp1_8.1.0-3ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (8.1.0-3ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libitm1_8.1.0-3ubuntu1_s390x.deb ... Unpacking libitm1:s390x (8.1.0-3ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../gcc-8-base_8.1.0-3ubuntu1_s390x.deb ... Unpacking gcc-8-base:s390x (8.1.0-3ubuntu1) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:s390x (8.1.0-3ubuntu1) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.1.0-3ubuntu1_s390x.deb ... Unpacking libgcc1:s390x (1:8.1.0-3ubuntu1) over (1:8-20180414-1ubuntu2) ... Setting up libgcc1:s390x (1:8.1.0-3ubuntu1) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libcc1-0_8.1.0-3ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (8.1.0-3ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libatomic1_8.1.0-3ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (8.1.0-3ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libstdc++6_8.1.0-3ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (8.1.0-3ubuntu1) over (8-20180414-1ubuntu2) ... Setting up libstdc++6:s390x (8.1.0-3ubuntu1) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.7.0~alpha0ubuntu1_s390x.deb ... Unpacking libapt-pkg5.0:s390x (1.7.0~alpha0ubuntu1) over (1.6.1) ... Setting up libapt-pkg5.0:s390x (1.7.0~alpha0ubuntu1) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../apt_1.7.0~alpha0ubuntu1_s390x.deb ... Unpacking apt (1.7.0~alpha0ubuntu1) over (1.6.1) ... Setting up apt (1.7.0~alpha0ubuntu1) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../mount_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking mount (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Preparing to unpack .../libcap-ng0_0.7.9-1_s390x.deb ... Unpacking libcap-ng0:s390x (0.7.9-1) over (0.7.7-3.1) ... Setting up libcap-ng0:s390x (0.7.9-1) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.44.1-2_s390x.deb ... Unpacking libcom-err2:s390x (1.44.1-2) over (1.44.1-1) ... Setting up libcom-err2:s390x (1.44.1-2) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.31-1_s390x.deb ... Unpacking libgpg-error0:s390x (1.31-1) over (1.27-6) ... Setting up libgpg-error0:s390x (1.31-1) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libss2_1.44.1-2_s390x.deb ... Unpacking libss2:s390x (1.44.1-2) over (1.44.1-1) ... Setting up libss2:s390x (1.44.1-2) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libncurses5_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncurses5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libncursesw5_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncursesw5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libtinfo5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up libtinfo5:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12397 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-3_s390x.deb ... Unpacking libgmp10:s390x (2:6.1.2+dfsg-3) over (2:6.1.2+dfsg-2) ... Setting up libgmp10:s390x (2:6.1.2+dfsg-3) ... (Reading database ... 12397 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.10-2_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.10-2) over (0.23.9-2) ... Setting up libp11-kit0:s390x (0.23.10-2) ... (Reading database ... 12397 files and directories currently installed.) Preparing to unpack .../00-libprocps6_2%3a3.3.12-3ubuntu2_s390x.deb ... Unpacking libprocps6:s390x (2:3.3.12-3ubuntu2) over (2:3.3.12-3ubuntu1) ... Selecting previously unselected package libncurses6:s390x. Preparing to unpack .../01-libncurses6_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncurses6:s390x (6.1+20180210-2ubuntu2) ... Preparing to unpack .../02-procps_2%3a3.3.12-3ubuntu2_s390x.deb ... Unpacking procps (2:3.3.12-3ubuntu2) over (2:3.3.12-3ubuntu1) ... Preparing to unpack .../03-libargon2-0_0~20161029-2_s390x.deb ... Unpacking libargon2-0:s390x (0~20161029-2) over (0~20161029-1.1) ... Preparing to unpack .../04-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) over (7.0-3) ... Preparing to unpack .../05-libreadline7_7.0-5_s390x.deb ... Unpacking libreadline7:s390x (7.0-5) over (7.0-3) ... Preparing to unpack .../06-libslang2_2.3.2-1ubuntu1_s390x.deb ... Unpacking libslang2:s390x (2.3.2-1ubuntu1) over (2.3.1a-3ubuntu1) ... Preparing to unpack .../07-libsqlite3-0_3.23.1-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.23.1-1) over (3.22.0-1) ... Preparing to unpack .../08-tzdata_2018e-1_all.deb ... Unpacking tzdata (2018e-1) over (2018d-1) ... Preparing to unpack .../09-libbinutils_2.30-17ubuntu1_s390x.deb ... Unpacking libbinutils:s390x (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../10-binutils-common_2.30-17ubuntu1_s390x.deb ... Unpacking binutils-common:s390x (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../11-binutils_2.30-17ubuntu1_s390x.deb ... Unpacking binutils (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../12-binutils-s390x-linux-gnu_2.30-17ubuntu1_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../13-libasan4_7.3.0-19ubuntu1_s390x.deb ... Unpacking libasan4:s390x (7.3.0-19ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../14-libubsan0_7.3.0-19ubuntu1_s390x.deb ... Unpacking libubsan0:s390x (7.3.0-19ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../15-g++-7_7.3.0-19ubuntu1_s390x.deb ... Unpacking g++-7 (7.3.0-19ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../16-gcc-7_7.3.0-19ubuntu1_s390x.deb ... Unpacking gcc-7 (7.3.0-19ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../17-libstdc++-7-dev_7.3.0-19ubuntu1_s390x.deb ... Unpacking libstdc++-7-dev:s390x (7.3.0-19ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../18-libgcc-7-dev_7.3.0-19ubuntu1_s390x.deb ... Unpacking libgcc-7-dev:s390x (7.3.0-19ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../19-cpp-7_7.3.0-19ubuntu1_s390x.deb ... Unpacking cpp-7 (7.3.0-19ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../20-gcc-7-base_7.3.0-19ubuntu1_s390x.deb ... Unpacking gcc-7-base:s390x (7.3.0-19ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../21-cpp_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking cpp (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../22-gcc_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking gcc (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../23-g++_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking g++ (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../24-dpkg-dev_1.19.0.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../25-libdpkg-perl_1.19.0.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../26-build-essential_12.5ubuntu2_s390x.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../27-e2fslibs_1.44.1-2_s390x.deb ... Unpacking e2fslibs:s390x (1.44.1-2) over (1.44.1-1) ... Preparing to unpack .../28-libcomerr2_1.44.1-2_s390x.deb ... Unpacking libcomerr2:s390x (1.44.1-2) over (1.44.1-1) ... Preparing to unpack .../29-libusb-0.1-4_2%3a0.1.12-32_s390x.deb ... Unpacking libusb-0.1-4:s390x (2:0.1.12-32) over (2:0.1.12-31) ... Preparing to unpack .../30-linux-libc-dev_4.15.0-21.22_s390x.deb ... Unpacking linux-libc-dev:s390x (4.15.0-21.22) over (4.15.0-20.21) ... Preparing to unpack .../31-pinentry-curses_1.1.0-1build1_s390x.deb ... Unpacking pinentry-curses (1.1.0-1build1) over (1.1.0-1) ... Setting up libncurses5:s390x (6.1+20180210-2ubuntu2) ... Setting up libgomp1:s390x (8.1.0-3ubuntu1) ... Setting up libatomic1:s390x (8.1.0-3ubuntu1) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:s390x (8.1.0-3ubuntu1) ... Setting up e2fslibs:s390x (1.44.1-2) ... Setting up libncursesw5:s390x (6.1+20180210-2ubuntu2) ... Setting up libreadline7:s390x (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun May 13 15:09:48 UTC 2018. Universal Time is now: Sun May 13 15:09:48 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up linux-libc-dev:s390x (4.15.0-21.22) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up perl-modules-5.26 (5.26.2-3) ... Setting up libprocps6:s390x (2:3.3.12-3ubuntu2) ... Setting up libargon2-0:s390x (0~20161029-2) ... Setting up gcc-7-base:s390x (7.3.0-19ubuntu1) ... Setting up binutils-common:s390x (2.30-17ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:s390x (5.26.2-3) ... Setting up libsqlite3-0:s390x (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:s390x (1.44.1-2) ... Setting up libslang2:s390x (2.3.2-1ubuntu1) ... Setting up libncurses6:s390x (6.1+20180210-2ubuntu2) ... Setting up libusb-0.1-4:s390x (2:0.1.12-32) ... Setting up libitm1:s390x (8.1.0-3ubuntu1) ... Setting up libasan4:s390x (7.3.0-19ubuntu1) ... Setting up libbinutils:s390x (2.30-17ubuntu1) ... Setting up libubsan0:s390x (7.3.0-19ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.30-17ubuntu1) ... Setting up libgcc-7-dev:s390x (7.3.0-19ubuntu1) ... Setting up cpp-7 (7.3.0-19ubuntu1) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:s390x (7.3.0-19ubuntu1) ... Setting up perl (5.26.2-3) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-19ubuntu1) ... Setting up g++-7 (7.3.0-19ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14874525 s390x cosmic-proposed -c chroot:build-PACKAGEBUILD-14874525 --arch=s390x --dist=cosmic-proposed --nolog tree-puzzle_5.2-10build1.dsc Initiating build PACKAGEBUILD-14874525 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:02:02 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-017.buildd +==============================================================================+ | tree-puzzle 5.2-10build1 (s390x) 13 May 2018 15:09 | +==============================================================================+ Package: tree-puzzle Version: 5.2-10build1 Source Version: 5.2-10build1 Distribution: cosmic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/tree-puzzle-dnMYW2/tree-puzzle-5.2' with '<>' I: NOTICE: Log filtering will replace 'build/tree-puzzle-dnMYW2' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14874525/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- tree-puzzle_5.2-10build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-iXHOPh/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-iXHOPh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-iXHOPh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-iXHOPh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-iXHOPh/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-iXHOPh/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-iXHOPh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12406 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), libopenmpi-dev, libsprng2-dev Filtered Build-Depends: debhelper (>= 10), libopenmpi-dev, libsprng2-dev dpkg-deb: building package 'sbuild-build-depends-tree-puzzle-dummy' in '/<>/resolver-TfTwkE/apt_archive/sbuild-build-depends-tree-puzzle-dummy.deb'. Ign:1 copy:/<>/resolver-TfTwkE/apt_archive ./ InRelease Get:2 copy:/<>/resolver-TfTwkE/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-TfTwkE/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-TfTwkE/apt_archive ./ Sources [231 B] Get:5 copy:/<>/resolver-TfTwkE/apt_archive ./ Packages [551 B] Fetched 2901 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install tree-puzzle build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcroco3 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsprng2 libsprng2-dev libssl1.0.0 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff gmp-doc libgmp10-doc libmpfr-dev krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils libsprng2-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcroco3 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsprng2 libsprng2-dev libssl1.0.0 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-tree-puzzle-dummy 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 23.0 MB of archives. After this operation, 95.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-TfTwkE/apt_archive ./ sbuild-build-depends-tree-puzzle-dummy 0.invalid.0 [884 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libbsd0 s390x 0.8.7-1 [40.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x man-db s390x 2.8.3-2 [1007 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic-mgc s390x 1:5.33-2 [193 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic1 s390x 1:5.33-2 [68.2 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x file s390x 1:5.33-2 [22.7 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-0 s390x 2.56.1-2ubuntu1 [1077 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x libicu60 s390x 60.2-3ubuntu3 [7837 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libxml2 s390x 2.9.4+dfsg1-6.1ubuntu1 [587 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext-base s390x 0.19.8.1-6build1 [48.2 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x libedit2 s390x 3.1-20170329-1build1 [72.7 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x libkrb5support0 s390x 1.16-2build1 [30.4 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x libk5crypto3 s390x 1.16-2build1 [84.1 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main s390x libkeyutils1 s390x 1.5.9-9.2ubuntu3 [8496 B] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x libkrb5-3 s390x 1.16-2build1 [261 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main s390x libgssapi-krb5-2 s390x 1.16-2build1 [110 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main s390x libssl1.0.0 s390x 1.0.2n-1ubuntu5 [777 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main s390x openssh-client s390x 1:7.7p1-2 [579 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x autoconf all 2.69-11 [322 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x automake all 1:1.15.1-3ubuntu2 [509 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x autopoint all 0.19.8.1-6build1 [412 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libtool all 2.4.6-2.1 [195 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-autoreconf all 17 [15.8 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main s390x libarchive-zip-perl all 1.60-1 [83.9 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main s390x libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-strip-nondeterminism all 0.041-1 [5188 B] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext s390x 0.19.8.1-6build1 [858 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x po-debconf all 1.0.20 [232 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x debhelper all 11.2.1ubuntu1 [906 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x libnl-3-200 s390x 3.2.29-0ubuntu3 [50.2 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main s390x libnl-route-3-200 s390x 3.2.29-0ubuntu3 [135 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libibverbs1 s390x 18.0-1 [45.9 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x ibverbs-providers s390x 18.0-1 [156 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x libevent-2.1-6 s390x 2.1.8-stable-4build1 [122 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main s390x libevent-core-2.1-6 s390x 2.1.8-stable-4build1 [79.6 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main s390x libevent-pthreads-2.1-6 s390x 2.1.8-stable-4build1 [5192 B] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x libgmpxx4ldbl s390x 2:6.1.2+dfsg-3 [8872 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x libgmp-dev s390x 2:6.1.2+dfsg-3 [302 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libltdl7 s390x 2.4.6-2.1 [37.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libltdl-dev s390x 2.4.6-2.1 [161 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/universe s390x libhwloc5 s390x 1.11.10-1 [91.6 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x libpciaccess0 s390x 0.14-1 [16.6 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x ocl-icd-libopencl1 s390x 2.2.11-1ubuntu1 [31.0 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/universe s390x libhwloc-plugins s390x 1.11.10-1 [11.8 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/universe s390x libpmix2 s390x 2.1.1~rc1-4 [295 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libopenmpi3 s390x 3.0.1.real-4 [1823 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/universe s390x libsprng2 s390x 2.0a-11 [71.4 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/universe s390x libsprng2-dev s390x 2.0a-11 [77.7 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x openmpi-common all 3.0.1.real-4 [143 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x openmpi-bin s390x 3.0.1.real-4 [92.1 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/universe s390x libhwloc-dev s390x 1.11.10-1 [155 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libibverbs-dev s390x 18.0-1 [114 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libopenmpi-dev s390x 3.0.1.real-4 [827 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.0 MB in 1s (27.9 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 12406 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_s390x.deb ... Unpacking libbsd0:s390x (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_s390x.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.0-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_s390x.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.33-2_s390x.deb ... Unpacking libmagic-mgc (1:5.33-2) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../06-libmagic1_1%3a5.33-2_s390x.deb ... Unpacking libmagic1:s390x (1:5.33-2) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.33-2_s390x.deb ... Unpacking file (1:5.33-2) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../08-libglib2.0-0_2.56.1-2ubuntu1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.56.1-2ubuntu1) ... Selecting previously unselected package libicu60:s390x. Preparing to unpack .../09-libicu60_60.2-3ubuntu3_s390x.deb ... Unpacking libicu60:s390x (60.2-3ubuntu3) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../10-libxml2_2.9.4+dfsg1-6.1ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.4+dfsg1-6.1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-6build1_s390x.deb ... Unpacking gettext-base (0.19.8.1-6build1) ... Selecting previously unselected package libedit2:s390x. Preparing to unpack .../12-libedit2_3.1-20170329-1build1_s390x.deb ... Unpacking libedit2:s390x (3.1-20170329-1build1) ... Selecting previously unselected package libkrb5support0:s390x. Preparing to unpack .../13-libkrb5support0_1.16-2build1_s390x.deb ... Unpacking libkrb5support0:s390x (1.16-2build1) ... Selecting previously unselected package libk5crypto3:s390x. Preparing to unpack .../14-libk5crypto3_1.16-2build1_s390x.deb ... Unpacking libk5crypto3:s390x (1.16-2build1) ... Selecting previously unselected package libkeyutils1:s390x. Preparing to unpack .../15-libkeyutils1_1.5.9-9.2ubuntu3_s390x.deb ... Unpacking libkeyutils1:s390x (1.5.9-9.2ubuntu3) ... Selecting previously unselected package libkrb5-3:s390x. Preparing to unpack .../16-libkrb5-3_1.16-2build1_s390x.deb ... Unpacking libkrb5-3:s390x (1.16-2build1) ... Selecting previously unselected package libgssapi-krb5-2:s390x. Preparing to unpack .../17-libgssapi-krb5-2_1.16-2build1_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.16-2build1) ... Selecting previously unselected package libssl1.0.0:s390x. Preparing to unpack .../18-libssl1.0.0_1.0.2n-1ubuntu5_s390x.deb ... Unpacking libssl1.0.0:s390x (1.0.2n-1ubuntu5) ... Selecting previously unselected package openssh-client. Preparing to unpack .../19-openssh-client_1%3a7.7p1-2_s390x.deb ... Unpacking openssh-client (1:7.7p1-2) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../20-libsigsegv2_2.12-2_s390x.deb ... Unpacking libsigsegv2:s390x (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../21-m4_1.4.18-1_s390x.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../22-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../23-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../24-automake_1%3a1.15.1-3ubuntu2_all.deb ... Unpacking automake (1:1.15.1-3ubuntu2) ... Selecting previously unselected package autopoint. Preparing to unpack .../25-autopoint_0.19.8.1-6build1_all.deb ... Unpacking autopoint (0.19.8.1-6build1) ... Selecting previously unselected package libtool. Preparing to unpack .../26-libtool_2.4.6-2.1_all.deb ... Unpacking libtool (2.4.6-2.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../27-dh-autoreconf_17_all.deb ... Unpacking dh-autoreconf (17) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../28-libarchive-zip-perl_1.60-1_all.deb ... Unpacking libarchive-zip-perl (1.60-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../29-libfile-stripnondeterminism-perl_0.041-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.041-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../30-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../31-dh-strip-nondeterminism_0.041-1_all.deb ... Unpacking dh-strip-nondeterminism (0.041-1) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../32-libcroco3_0.6.12-2_s390x.deb ... Unpacking libcroco3:s390x (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../33-gettext_0.19.8.1-6build1_s390x.deb ... Unpacking gettext (0.19.8.1-6build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../34-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../35-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../36-debhelper_11.2.1ubuntu1_all.deb ... Unpacking debhelper (11.2.1ubuntu1) ... Selecting previously unselected package libnl-3-200:s390x. Preparing to unpack .../37-libnl-3-200_3.2.29-0ubuntu3_s390x.deb ... Unpacking libnl-3-200:s390x (3.2.29-0ubuntu3) ... Selecting previously unselected package libnl-route-3-200:s390x. Preparing to unpack .../38-libnl-route-3-200_3.2.29-0ubuntu3_s390x.deb ... Unpacking libnl-route-3-200:s390x (3.2.29-0ubuntu3) ... Selecting previously unselected package libibverbs1:s390x. Preparing to unpack .../39-libibverbs1_18.0-1_s390x.deb ... Unpacking libibverbs1:s390x (18.0-1) ... Selecting previously unselected package ibverbs-providers:s390x. Preparing to unpack .../40-ibverbs-providers_18.0-1_s390x.deb ... Unpacking ibverbs-providers:s390x (18.0-1) ... Selecting previously unselected package libevent-2.1-6:s390x. Preparing to unpack .../41-libevent-2.1-6_2.1.8-stable-4build1_s390x.deb ... Unpacking libevent-2.1-6:s390x (2.1.8-stable-4build1) ... Selecting previously unselected package libevent-core-2.1-6:s390x. Preparing to unpack .../42-libevent-core-2.1-6_2.1.8-stable-4build1_s390x.deb ... Unpacking libevent-core-2.1-6:s390x (2.1.8-stable-4build1) ... Selecting previously unselected package libevent-pthreads-2.1-6:s390x. Preparing to unpack .../43-libevent-pthreads-2.1-6_2.1.8-stable-4build1_s390x.deb ... Unpacking libevent-pthreads-2.1-6:s390x (2.1.8-stable-4build1) ... Selecting previously unselected package libgmpxx4ldbl:s390x. Preparing to unpack .../44-libgmpxx4ldbl_2%3a6.1.2+dfsg-3_s390x.deb ... Unpacking libgmpxx4ldbl:s390x (2:6.1.2+dfsg-3) ... Selecting previously unselected package libgmp-dev:s390x. Preparing to unpack .../45-libgmp-dev_2%3a6.1.2+dfsg-3_s390x.deb ... Unpacking libgmp-dev:s390x (2:6.1.2+dfsg-3) ... Selecting previously unselected package libltdl7:s390x. Preparing to unpack .../46-libltdl7_2.4.6-2.1_s390x.deb ... Unpacking libltdl7:s390x (2.4.6-2.1) ... Selecting previously unselected package libltdl-dev:s390x. Preparing to unpack .../47-libltdl-dev_2.4.6-2.1_s390x.deb ... Unpacking libltdl-dev:s390x (2.4.6-2.1) ... Selecting previously unselected package libhwloc5:s390x. Preparing to unpack .../48-libhwloc5_1.11.10-1_s390x.deb ... Unpacking libhwloc5:s390x (1.11.10-1) ... Selecting previously unselected package libpciaccess0:s390x. Preparing to unpack .../49-libpciaccess0_0.14-1_s390x.deb ... Unpacking libpciaccess0:s390x (0.14-1) ... Selecting previously unselected package ocl-icd-libopencl1:s390x. Preparing to unpack .../50-ocl-icd-libopencl1_2.2.11-1ubuntu1_s390x.deb ... Unpacking ocl-icd-libopencl1:s390x (2.2.11-1ubuntu1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../51-libhwloc-plugins_1.11.10-1_s390x.deb ... Unpacking libhwloc-plugins (1.11.10-1) ... Selecting previously unselected package libpmix2:s390x. Preparing to unpack .../52-libpmix2_2.1.1~rc1-4_s390x.deb ... Unpacking libpmix2:s390x (2.1.1~rc1-4) ... Selecting previously unselected package libopenmpi3:s390x. Preparing to unpack .../53-libopenmpi3_3.0.1.real-4_s390x.deb ... Unpacking libopenmpi3:s390x (3.0.1.real-4) ... Selecting previously unselected package libsprng2. Preparing to unpack .../54-libsprng2_2.0a-11_s390x.deb ... Unpacking libsprng2 (2.0a-11) ... Selecting previously unselected package libsprng2-dev. Preparing to unpack .../55-libsprng2-dev_2.0a-11_s390x.deb ... Unpacking libsprng2-dev (2.0a-11) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../56-openmpi-common_3.0.1.real-4_all.deb ... Unpacking openmpi-common (3.0.1.real-4) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../57-openmpi-bin_3.0.1.real-4_s390x.deb ... Unpacking openmpi-bin (3.0.1.real-4) ... Selecting previously unselected package libhwloc-dev:s390x. Preparing to unpack .../58-libhwloc-dev_1.11.10-1_s390x.deb ... Unpacking libhwloc-dev:s390x (1.11.10-1) ... Selecting previously unselected package libibverbs-dev:s390x. Preparing to unpack .../59-libibverbs-dev_18.0-1_s390x.deb ... Unpacking libibverbs-dev:s390x (18.0-1) ... Selecting previously unselected package libopenmpi-dev:s390x. Preparing to unpack .../60-libopenmpi-dev_3.0.1.real-4_s390x.deb ... Unpacking libopenmpi-dev:s390x (3.0.1.real-4) ... Selecting previously unselected package sbuild-build-depends-tree-puzzle-dummy. Preparing to unpack .../61-sbuild-build-depends-tree-puzzle-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-tree-puzzle-dummy (0.invalid.0) ... Setting up libedit2:s390x (3.1-20170329-1build1) ... Setting up libicu60:s390x (60.2-3ubuntu3) ... Setting up libevent-2.1-6:s390x (2.1.8-stable-4build1) ... Setting up libevent-core-2.1-6:s390x (2.1.8-stable-4build1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libssl1.0.0:s390x (1.0.2n-1ubuntu5) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up libsprng2 (2.0a-11) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:s390x (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:s390x (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:s390x (0.8.7-1) ... Setting up libkrb5support0:s390x (1.16-2build1) ... Setting up libxml2:s390x (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:s390x (1:5.33-2) ... Setting up libcroco3:s390x (0.6.12-2) ... Setting up libevent-pthreads-2.1-6:s390x (2.1.8-stable-4build1) ... Setting up openmpi-common (3.0.1.real-4) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:s390x (2.4.6-2.1) ... Setting up libpciaccess0:s390x (0.14-1) ... Setting up ocl-icd-libopencl1:s390x (2.2.11-1ubuntu1) ... Setting up libkeyutils1:s390x (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:s390x (2:6.1.2+dfsg-3) ... Setting up libnl-3-200:s390x (3.2.29-0ubuntu3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libgmp-dev:s390x (2:6.1.2+dfsg-3) ... Setting up libk5crypto3:s390x (1.16-2build1) ... Setting up libltdl-dev:s390x (2.4.6-2.1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libnl-route-3-200:s390x (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:s390x (1.11.10-1) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libsprng2-dev (2.0a-11) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:s390x (1.16-2build1) ... Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:s390x (18.0-1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:s390x (1.11.10-1) ... Setting up libpmix2:s390x (2.1.1~rc1-4) ... Setting up libgssapi-krb5-2:s390x (1.16-2build1) ... Setting up ibverbs-providers:s390x (18.0-1) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libibverbs-dev:s390x (18.0-1) ... Setting up libopenmpi3:s390x (3.0.1.real-4) ... Setting up openmpi-bin (3.0.1.real-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:s390x (3.0.1.real-4) ... update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-tree-puzzle-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-124-generic s390x (s390x) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-19ubuntu1 gcc-7_7.3.0-19ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu1 linux-libc-dev_4.15.0-21.22 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-s390x-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-19ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-19ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-19ubuntu1 gcc-7-base_7.3.0-19ubuntu1 gcc-8-base_8.1.0-3ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 ibverbs-providers_18.0-1 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-3ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-3ubuntu1 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20170329-1build1 libevent-2.1-6_2.1.8-stable-4build1 libevent-core-2.1-6_2.1.8-stable-4build1 libevent-pthreads-2.1-6_2.1.8-stable-4build1 libext2fs2_1.44.1-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-19ubuntu1 libgcc1_1:8.1.0-3ubuntu1 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp-dev_2:6.1.2+dfsg-3 libgmp10_2:6.1.2+dfsg-3 libgmpxx4ldbl_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-3ubuntu1 libgpg-error0_1.31-1 libgssapi-krb5-2_1.16-2build1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs-dev_18.0-1 libibverbs1_18.0-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-3ubuntu1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu3 libkmod2_24-1ubuntu3 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libopenmpi-dev_3.0.1.real-4 libopenmpi3_3.0.1.real-4 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpmix2_2.1.1~rc1-4 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsprng2_2.0a-11 libsprng2-dev_2.0a-11 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu1 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-19ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-21.22 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.0.1.real-4 openmpi-common_3.0.1.real-4 openssh-client_1:7.7p1-2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tree-puzzle-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-1 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun May 13 15:06:53 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tree-puzzle_5.2-10build1.dsc dpkg-source: info: extracting tree-puzzle in tree-puzzle-5.2 dpkg-source: info: unpacking tree-puzzle_5.2.orig.tar.gz dpkg-source: info: unpacking tree-puzzle_5.2-10build1.debian.tar.xz dpkg-source: info: applying 20_no_copy_of_sprng.patch dpkg-source: info: applying tests-need-bash.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14874525 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14874525 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14874525 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package tree-puzzle dpkg-buildpackage: info: source version 5.2-10build1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build tree-puzzle-5.2 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --no-parallel dh_clean -O--no-parallel debian/rules build-arch dh build-arch --no-parallel dh_update_autotools_config -a -O--no-parallel dh_autoreconf -a -O--no-parallel configure.ac:27: warning: underquoted definition of AC_TEST_MPICC configure.ac:27: run info Automake 'Extending aclocal' configure.ac:27: or see http://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:11: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:11: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:17: installing './compile' src/Makefile.am:45: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' dh_auto_configure -a -O--no-parallel ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking target system type... s390x-ibm-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking whether gcc and cc understand -c and -o together... yes checking whether make sets $(MAKE)... (cached) yes checking for mpcc... no checking for hcc... no checking for mpicc... /usr/bin/mpicc checking for mpicc_lam... no checking for mpicc_mpich... no checking for cc... /usr/bin/cc checking whether /usr/bin/mpicc works as MPI compiler... yes checking whether /usr/bin/mpicc handles quotes correctly... yes checking whether gcc handles quotes correctly... yes checking for main in -lm... yes checking for main in -lsprng... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating data/Makefile config.status: creating tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a -O--no-parallel make -j1 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-am make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv gamma.o sgamma.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml1.c && mv ml1.o sml1.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml2.c && mv ml2.o sml2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./mlparam.c && mv mlparam.o smlparam.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model1.c && mv model1.o smodel1.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model2.c && mv model2.o smodel2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle1.c && mv puzzle1.o spuzzle1.o ./puzzle1.c: In function ‘readallquarts’: ./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "TREE-PUZZLE\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n\n", dummyversion); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "species: %d\n", &dummynspec); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "quartets: %lu\n", &dummynquart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n", dummyname); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function ‘setoptions’: ./puzzle1.c:718:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &locroot); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &fracinv); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Geta); ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numcats); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numclust); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &(Freqtpm[i])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &Numtrial); ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &lmqts); ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &outgroup); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &TSparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &YRparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &tstvf84); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ACrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_AGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ATrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_GTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle2.c && mv puzzle2.o spuzzle2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./pstep.c && mv pstep.o spstep.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./util.c && mv util.o sutil.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./consensus.c && mv consensus.o sconsensus.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treesort.c && mv treesort.o streesort.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treetest.c && mv treetest.o streetest.o gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o -lsprng -lm -o puzzle /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv gamma.o pgamma.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml1.c && mv ml1.o pml1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml2.c && mv ml2.o pml2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./mlparam.c && mv mlparam.o pmlparam.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model1.c && mv model1.o pmodel1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model2.c && mv model2.o pmodel2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle1.c && mv puzzle1.o ppuzzle1.o ./puzzle1.c: In function ‘readallquarts’: ./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "TREE-PUZZLE\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n\n", dummyversion); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "species: %d\n", &dummynspec); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "quartets: %lu\n", &dummynquart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n", dummyname); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function ‘setoptions’: ./puzzle1.c:718:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &locroot); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &fracinv); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Geta); ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numcats); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numclust); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &(Freqtpm[i])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &Numtrial); ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &lmqts); ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &outgroup); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &TSparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &YRparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &tstvf84); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ACrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_AGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ATrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_GTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle2.c && mv puzzle2.o ppuzzle2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./pstep.c && mv pstep.o ppstep.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./sched.c && mv sched.o psched.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./util.c && mv util.o putil.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./consensus.c && mv consensus.o pconsensus.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treesort.c && mv treesort.o ptreesort.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treetest.c && mv treetest.o ptreetest.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ppuzzle.c ./ppuzzle.c: In function ‘PP_Update_EEI’: ./ppuzzle.c:300:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:302:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:304:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:306:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(3, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_Final_Update’: ./ppuzzle.c:344:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(DMVector[0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:346:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:348:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(fracinv), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:350:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:352:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:354:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:356:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(6, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendSizes’: ./ppuzzle.c:722:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:723:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:725:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvSizes’: ./ppuzzle.c:800:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:801:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:803:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvData’: ./ppuzzle.c:892:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:894:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:896:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:898:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:900:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:902:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:904:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:906:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:908:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:910:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(iexp[0][0]), &(Dtypeaddr[9])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:912:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:914:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:916:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendData’: ./ppuzzle.c:987:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:989:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:991:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:993:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:995:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:997:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:999:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1001:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1003:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1005:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(iexp[0][0]), &(Dtypeaddr [9])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1007:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1009:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1011:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendQuart’: ./ppuzzle.c:1153:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1154:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1156:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvQuart’: ./ppuzzle.c:1204:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1205:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1207:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendQuartBlock’: ./ppuzzle.c:1371:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ulis, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1372:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1374:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c:1387:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(trueaddr, DtypeaddrRes); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1390:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(bq, (DtypeaddrRes + 1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1392:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvQuartBlock’: ./ppuzzle.c:1458:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ulis, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1459:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1461:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c:1489:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(trueaddr, DtypeaddrRes); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1494:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(bq, (DtypeaddrRes+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1495:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendAllQuarts’: ./ppuzzle.c:1640:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(quartetinfo[0]), Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1641:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvAllQuarts’: ./ppuzzle.c:1689:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(quartetinfo[0]), Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1690:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendSplitsBlock’: ./ppuzzle.c:1751:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(biparts[n][0][0]), &(Dtypeaddr[n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1757:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address((*pstptr).tree, &(Dtypeaddr[(int)blocksize + n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1767:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[((int)blocksize + pstnum)])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1769:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(((int)blocksize + pstnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvSplitsBlock’: ./ppuzzle.c:1846:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&((*bip)[n][0][0]), &(Dtypeaddr[n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1852:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstarr[n][0]), &(Dtypeaddr[(int)*blocksize + n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1857:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[(int)*blocksize + pstlistnum])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1859:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(((int)*blocksize + pstlistnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendDone’: ./ppuzzle.c:2056:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2057:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2059:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvDone’: ./ppuzzle.c:2176:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2177:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1201:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2179:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:1818:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now pgamma.o pml1.o pml2.o pmlparam.o pmodel1.o pmodel2.o ppuzzle1.o ppuzzle2.o ppstep.o psched.o putil.o pconsensus.o ptreesort.o ptreetest.o ppuzzle.o -lsprng -lm -o ppuzzle make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' Making all in data make[2]: Entering directory '/<>/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/data' Making all in tests make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' # unfortunately most tests are failing for the moment # the issue is documented in # debian/patches/patch_test_results.patch # and needs to be discussed with upstream dh_auto_test || true make -j1 check VERBOSE=1 make[2]: Entering directory '/<>' Making check in src make[3]: Entering directory '/<>/src' make[3]: Leaving directory '/<>/src' Making check in doc make[3]: Entering directory '/<>/doc' make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>/doc' make[3]: Leaving directory '/<>/doc' Making check in data make[3]: Entering directory '/<>/data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/data' Making check in tests make[3]: Entering directory '/<>/tests' make check-TESTS make[4]: Entering directory '/<>/tests' make[5]: Entering directory '/<>/tests' SKIP: build-puzzle FAIL: qp-pure-bin.test FAIL: qp-pure-nucl.test FAIL: qp-tn-nucl.test FAIL: qp-hky-clock-nucl.test FAIL: qp-hky-rhet-nucl.test FAIL: qp-hky-rhet-clock-nucl.test FAIL: qp-pure-prot.test FAIL: qp-mtrev-prot.test FAIL: qp-vt-prot.test FAIL: qp-wag-prot.test FAIL: qp-clock.test FAIL: qp-jtt-prot.test FAIL: qp-jtt-rhet-prot.test FAIL: qp-jtt-rhet-clock-prot.test FAIL: lm-pure-prot.test FAIL: ut-pure-prot.test FAIL: cons-pure-prot.test SKIP: build-remark ============================ : tests/test-suite.log ============================ # TOTAL: 19 # PASS: 0 # SKIP: 2 # XFAIL: 0 # FAIL: 17 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 SKIP: build-puzzle ================== SKIP build-puzzle (exit status: 77) FAIL: qp-pure-bin ================= Testing: binary data, quartet puzzling (qp-pure-bin) 171d170 < *...* : 1000 172a172 > *...* : 1000 FAIL qp-pure-bin.test (exit status: 1) FAIL: qp-pure-nucl ================== Testing: nucleotide data, default model, quartet puzzling (qp-pure-nucl) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); FAIL qp-pure-nucl.test (exit status: 1) FAIL: qp-tn-nucl ================ Testing: nucleotide data, TN, quartet puzzling (qp-tn-nucl) 24,25c24,25 < Transition/transversion parameter (estimated from data set): 1.25 (S.E. 0.40) < Y/R transition parameter (estimated from data set): 2.26 (S.E. 0.89) --- > Transition/transversion parameter (estimated from data set): 1.24 (S.E. 0.61) > Y/R transition parameter (estimated from data set): 2.27 (S.E. 0.65) 30c30 < A-G rate: 1.54307 --- > A-G rate: 1.52641 33c33 < C-T rate: 3.45671 --- > C-T rate: 3.42338 43,44c43,44 < Expected transition/transversion ratio: 1.58 < Expected pyrimidine transition/purine transition ratio: 6.68 --- > Expected transition/transversion ratio: 1.57 > Expected pyrimidine transition/purine transition ratio: 6.69 102,116c102,116 < Thylacinus 0.00000 0.25985 0.22390 0.25044 0.26641 0.22 0.22626 < 0.24180 < Sarcophilu 0.25985 0.00000 0.13242 0.27396 0.28989 0.33153 0.26303 < 0.30195 < Dasyurus 0.22390 0.13242 0.00000 0.20339 0.25292 0.25452 0.17982 < 0.24252 < Echymipera 0.25044 0.27396 0.20339 0.00000 0.30315 0.34463 0.23492 < 0.27794 < Trichosuru 0.26641 0.28989 0.25292 0.30315 0.00000 0.21427 0.29184 < 0.27804 < Phalanger 0.22 0.33153 0.25452 0.34463 0.21427 0.00000 0.29454 < 0.33617 < Philander 0.22626 0.26303 0.17982 0.23492 0.29184 0.29454 0.00000 < 0.22765 < Bos 0.24180 0.30195 0.24252 0.27794 0.27804 0.33617 0.22765 --- > Thylacinus 0.00000 0.25968 0.22378 0.25026 0.26619 0.25302 0.22610 > 0.24162 > Sarcophilu 0.25968 0.00000 0.13240 0.27376 0.28965 0.33121 0.26282 > 0.30169 > Dasyurus 0.22378 0.13240 0.00000 0.20328 0.25274 0.25432 0.17972 > 0.24235 > Echymipera 0.25026 0.27376 0.20328 0.00000 0.30289 0.34430 0.23479 > 0.27773 > Trichosuru 0.26619 0.28965 0.25274 0.30289 0.00000 0.21414 0.29157 > 0.27782 > Phalanger 0.25302 0.33121 0.25432 0.34430 0.21414 0.00000 0.29425 > 0.33582 > Philander 0.22610 0.26282 0.17972 0.23479 0.29157 0.29425 0.00000 > 0.22749 > Bos 0.24162 0.30169 0.24235 0.27773 0.27782 0.33582 0.22749 119,121c119,121 < Average distance (over all possible pairs of sequences): 0.25896 < minimum : 0.13242, maximum : 0.34463 < variance : 0.00217, std.dev. : 0.04660 --- > Average distance (over all possible pairs of sequences): 0.25876 > minimum : 0.13240, maximum : 0.34430 > variance : 0.00217, std.dev. : 0.04653 186c186 < :-----93: --- > :-----94: 193,194c193,194 < :-67: :---Philander < : :-66: --- > :-63: :---Philander > : :-67: 204,205c204,205 < (Thylacinus,(Trichosuru,Phalanger)93,((Sarcophilu,Dasyurus)98, < (Philander,Bos)66,Echymipera)67); --- > (Thylacinus,(Trichosuru,Phalanger)94,((Sarcophilu,Dasyurus)98, > (Philander,Bos)67,Echymipera)63); 215,218c215,218 < *..***** : 981 < ****..** : 929 < *...**.. : 667 < ******.. : 655 --- > *..***** : 979 > ****..** : 935 > ******.. : 666 > *...**.. : 629 224c224 < *...**** : 399 --- > *...**** : 422 229,248c229,248 < ***.**.. : 267 < *..***.. : 153 < *...**.* : 142 < ***.**.* : 113 < *..*..** : 98 < ****..*. : 91 < *.....** : 71 < *....*.. : 69 < ****.... : 61 < *..*.... : 49 < ***.***. : 34 < *..***.* : 34 < ***..... : 32 < ***...** : 26 < *..*..*. : 25 < *.....*. : 24 < *......* : 21 < **..**** : 18 < *...***. : 15 < *..****. : 14 --- > ***.**.. : 271 > *..***.. : 132 > *...**.* : 122 > ***.**.* : 112 > *..*..** : 94 > *.....** : 88 > ****.... : 83 > ****..*. : 79 > *..*.... : 65 > *....*.. : 56 > *..***.* : 49 > ***.***. : 40 > ***..... : 36 > **..**** : 21 > *..*..*. : 21 > *.....*. : 20 > *......* : 19 > *...***. : 17 > ***...** : 13 > ****.**. : 7 250c250 < (3 other less frequent bipartitions not shown) --- > (9 other less frequent bipartitions not shown) 277,284c277,284 < Thylacinus 1 0.11477 0.03960 9 0.05938 0.03457 < Sarcophilu 2 0.12894 0.03728 10 0.08150 0.03444 < Dasyurus 3 0.00944 0.01286 11 0.04414 0.02611 < Echymipera 4 0.14315 0.04219 12 0.05430 0.03073 < Trichosuru 5 0.10852 0.03853 < Phalanger 6 0.12336 0.04131 < Philander 7 0.09011 0.03480 7 iterations until convergence < Bos 8 0.13730 0.04197 log L: -600.80 --- > Thylacinus 1 0.11472 0.03957 9 0.05924 0.03453 > Sarcophilu 2 0.12889 0.03726 10 0.08141 0.03441 > Dasyurus 3 0.00946 0.01286 11 0.04411 0.02610 > Echymipera 4 0.14312 0.04216 12 0.05429 0.03071 > Trichosuru 5 0.10849 0.03850 > Phalanger 6 0.12332 0.04128 > Philander 7 0.09008 0.03478 7 iterations until convergence > Bos 8 0.13724 0.04194 log L: -600.80 290,292c290,292 < (Thylacinus:0.11477,(Trichosuru:0.10852,Phalanger:0.12336)93:0.05938, < ((Sarcophilu:0.12894,Dasyurus:0.00944)98:0.08150,(Philander:0.09011, < Bos:0.13730)66:0.04414,Echymipera:0.14315)67:0.05430); --- > (Thylacinus:0.11472,(Trichosuru:0.10849,Phalanger:0.12332)94:0.05924, > ((Sarcophilu:0.12889,Dasyurus:0.00946)98:0.08141,(Philander:0.09008, > Bos:0.13724)67:0.04411,Echymipera:0.14312)63:0.05429); FAIL qp-tn-nucl.test (exit status: 1) FAIL: qp-hky-clock-nucl ======================= Testing: nucleotide data, HKY, clock, quartet puzzling (qp-hky-clock-nucl) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); 346,348c346,348 < (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)96:0.04504 < ,((Sarcophilu:0.06189,Dasyurus:0.06189)99:0.06663,(Philander:0.09549, < Bos:0.09549)66:0.03304,Echymipera:0.12852)70:0.01851):0.00001); --- > (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)97:0.04504 > ,((Sarcophilu:0.06189,Dasyurus:0.06189)98:0.06663,(Philander:0.09549, > Bos:0.09549)65:0.03304,Echymipera:0.12852)71:0.01851):0.00001); FAIL qp-hky-clock-nucl.test (exit status: 1) FAIL: qp-hky-rhet-nucl ====================== Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling (qp-hky-rhet-nucl) 29c29 < A-G rate: 5.85001 --- > A-G rate: 5.85063 32c32 < C-T rate: 5.85001 --- > C-T rate: 5.85063 101,115c101,115 < Thylacinus 0.00000 0.52935 0.37897 0.31 0.58915 0.56144 0.43928 < 0.85 < Sarcophilu 0.52935 0.00000 0.17837 0.62525 0.69884 0.93 0.62320 < 0.78586 < Dasyurus 0.37897 0.17837 0.00000 0.39029 0.53425 0.60362 0.31917 < 0.14 < Echymipera 0.31 0.62525 0.39029 0.00000 0.70221 0.94270 0.42012 < 0.66056 < Trichosuru 0.58915 0.69884 0.53425 0.70221 0.00000 0.39413 0.70009 < 0.62690 < Phalanger 0.56144 0.93 0.60362 0.94270 0.39413 0.00000 0.78648 < 0.98907 < Philander 0.43928 0.62320 0.31917 0.42012 0.70009 0.78648 0.00000 < 0.49259 < Bos 0.85 0.78586 0.14 0.66056 0.62690 0.98907 0.49259 --- > Thylacinus 0.00000 0.52940 0.37900 0.52236 0.58922 0.56150 0.43932 > 0.55291 > Sarcophilu 0.52940 0.00000 0.17837 0.62532 0.69892 0.93602 0.62327 > 0.78596 > Dasyurus 0.37900 0.17837 0.00000 0.39032 0.53431 0.60369 0.31919 > 0.56220 > Echymipera 0.52236 0.62532 0.39032 0.00000 0.70229 0.94283 0.42016 > 0.66063 > Trichosuru 0.58922 0.69892 0.53431 0.70229 0.00000 0.39416 0.70017 > 0.62697 > Phalanger 0.56150 0.93602 0.60369 0.94283 0.39416 0.00000 0.78658 > 0.98921 > Philander 0.43932 0.62327 0.31919 0.42016 0.70017 0.78658 0.00000 > 0.49264 > Bos 0.55291 0.78596 0.56220 0.66063 0.62697 0.98921 0.49264 118,120c118,120 < Average distance (over all possible pairs of sequences): 0.59090 < minimum : 0.17837, maximum : 0.98907 < variance : 0.03580, std.dev. : 0.18921 --- > Average distance (over all possible pairs of sequences): 0.59096 > minimum : 0.17837, maximum : 0.98921 > variance : 0.03581, std.dev. : 0.18924 137,139c137,139 < 6 0.7769 0.1250 < 7 1.8181 0.1250 < 8 4.9545 0.1250 --- > 6 0.7768 0.1250 > 7 1.8180 0.1250 > 8 4.9547 0.1250 210c210 < :-92: --- > :-90: 214c214 < :-86: --- > :-87: 228c228 < (Thylacinus,(Sarcophilu,Dasyurus)92,(Trichosuru,Phalanger)86, --- > (Thylacinus,(Sarcophilu,Dasyurus)90,(Trichosuru,Phalanger)87, 239,240c239,240 < *..***** : 924 < ****..** : 855 --- > *..***** : 904 > ****..** : 872 246,248c246,247 < *...**.. : 387 < ******.. : 339 < *...**** : 213 --- > *...**.. : 377 > ******.. : 357 253,272c252,271 < ***.**.* : 209 < ***.**.. : 203 < ***.***. : 171 < *..*..** : 138 < *......* : 114 < *...**.* : 112 < *..***.. : 98 < *.....** : 96 < *..***.* : 94 < *..*.... : 93 < ***..... : 88 < *..****. : 78 < *...***. : 77 < ****..*. : 72 < ***...** : 66 < *....*.. : 62 < *.....*. : 61 < ****.... : 61 < ****...* : 45 < *..*..*. : 42 --- > ***.**.* : 220 > ***.**.. : 218 > *...**** : 205 > ***.***. : 145 > *......* : 135 > *..*..** : 129 > *...**.* : 124 > *.....** : 106 > *..*.... : 102 > *..***.* : 92 > *..***.. : 91 > ***..... : 86 > *.....*. : 71 > ***...** : 70 > *..****. : 67 > ****..*. : 67 > *....*.. : 64 > *...***. : 54 > ****.... : 52 > *..*...* : 47 274c273 < (47 other less frequent bipartitions not shown) --- > (49 other less frequent bipartitions not shown) 301,308c300,307 < Thylacinus 1 0.23361 0.10247 9 0.19926 0.09575 < Sarcophilu 2 0.18904 0.06712 10 0.22288 0.13092 < Dasyurus 3 0.00001 0.00143 < Echymipera 4 0.27839 0.11689 < Trichosuru 5 0.17820 0.10158 < Phalanger 6 0.27517 0.12611 < Philander 7 0.22531 0.10268 10 iterations until convergence < Bos 8 0.38503 0.14564 log L: -570.33 --- > Thylacinus 1 0.23363 0.10248 9 0.19927 0.09576 > Sarcophilu 2 0.18905 0.06712 10 0.22291 0.13093 > Dasyurus 3 0.00001 0.00200 > Echymipera 4 0.27841 0.11691 > Trichosuru 5 0.17822 0.10160 > Phalanger 6 0.27519 0.12613 > Philander 7 0.22533 0.10269 10 iterations until convergence > Bos 8 0.38507 0.14566 log L: -570.33 316,318c315,317 < (Thylacinus:0.23361,(Sarcophilu:0.18904,Dasyurus:0.00001)92:0.19926, < (Trichosuru:0.17820,Phalanger:0.27517)86:0.22288,Echymipera:0.27839, < Philander:0.22531,Bos:0.38503); --- > (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)90:0.19927, > (Trichosuru:0.17822,Phalanger:0.27519)87:0.22291,Echymipera:0.27841, > Philander:0.22533,Bos:0.38507); FAIL qp-hky-rhet-nucl.test (exit status: 1) FAIL: qp-hky-rhet-clock-nucl ============================ Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet puzzling (qp-hky-rhet-clock-nucl) 29c29 < A-G rate: 5.85001 --- > A-G rate: 5.85063 32c32 < C-T rate: 5.85001 --- > C-T rate: 5.85063 101,115c101,115 < Thylacinus 0.00000 0.52935 0.37897 0.31 0.58915 0.56144 0.43928 < 0.85 < Sarcophilu 0.52935 0.00000 0.17837 0.62525 0.69884 0.93 0.62320 < 0.78586 < Dasyurus 0.37897 0.17837 0.00000 0.39029 0.53425 0.60362 0.31917 < 0.14 < Echymipera 0.31 0.62525 0.39029 0.00000 0.70221 0.94270 0.42012 < 0.66056 < Trichosuru 0.58915 0.69884 0.53425 0.70221 0.00000 0.39413 0.70009 < 0.62690 < Phalanger 0.56144 0.93 0.60362 0.94270 0.39413 0.00000 0.78648 < 0.98907 < Philander 0.43928 0.62320 0.31917 0.42012 0.70009 0.78648 0.00000 < 0.49259 < Bos 0.85 0.78586 0.14 0.66056 0.62690 0.98907 0.49259 --- > Thylacinus 0.00000 0.52940 0.37900 0.52236 0.58922 0.56150 0.43932 > 0.55291 > Sarcophilu 0.52940 0.00000 0.17837 0.62532 0.69892 0.93602 0.62327 > 0.78596 > Dasyurus 0.37900 0.17837 0.00000 0.39032 0.53431 0.60369 0.31919 > 0.56220 > Echymipera 0.52236 0.62532 0.39032 0.00000 0.70229 0.94283 0.42016 > 0.66063 > Trichosuru 0.58922 0.69892 0.53431 0.70229 0.00000 0.39416 0.70017 > 0.62697 > Phalanger 0.56150 0.93602 0.60369 0.94283 0.39416 0.00000 0.78658 > 0.98921 > Philander 0.43932 0.62327 0.31919 0.42016 0.70017 0.78658 0.00000 > 0.49264 > Bos 0.55291 0.78596 0.56220 0.66063 0.62697 0.98921 0.49264 118,120c118,120 < Average distance (over all possible pairs of sequences): 0.59090 < minimum : 0.17837, maximum : 0.98907 < variance : 0.03580, std.dev. : 0.18921 --- > Average distance (over all possible pairs of sequences): 0.59096 > minimum : 0.17837, maximum : 0.98921 > variance : 0.03581, std.dev. : 0.18924 137,139c137,139 < 6 0.7769 0.1250 < 7 1.8181 0.1250 < 8 4.9545 0.1250 --- > 6 0.7768 0.1250 > 7 1.8180 0.1250 > 8 4.9547 0.1250 210c210 < :-92: --- > :-90: 214c214 < :-86: --- > :-87: 228c228 < (Thylacinus,(Sarcophilu,Dasyurus)92,(Trichosuru,Phalanger)86, --- > (Thylacinus,(Sarcophilu,Dasyurus)90,(Trichosuru,Phalanger)87, 239,240c239,240 < *..***** : 924 < ****..** : 855 --- > *..***** : 904 > ****..** : 872 246,248c246,247 < *...**.. : 387 < ******.. : 339 < *...**** : 213 --- > *...**.. : 377 > ******.. : 357 253,272c252,271 < ***.**.* : 209 < ***.**.. : 203 < ***.***. : 171 < *..*..** : 138 < *......* : 114 < *...**.* : 112 < *..***.. : 98 < *.....** : 96 < *..***.* : 94 < *..*.... : 93 < ***..... : 88 < *..****. : 78 < *...***. : 77 < ****..*. : 72 < ***...** : 66 < *....*.. : 62 < *.....*. : 61 < ****.... : 61 < ****...* : 45 < *..*..*. : 42 --- > ***.**.* : 220 > ***.**.. : 218 > *...**** : 205 > ***.***. : 145 > *......* : 135 > *..*..** : 129 > *...**.* : 124 > *.....** : 106 > *..*.... : 102 > *..***.* : 92 > *..***.. : 91 > ***..... : 86 > *.....*. : 71 > ***...** : 70 > *..****. : 67 > ****..*. : 67 > *....*.. : 64 > *...***. : 54 > ****.... : 52 > *..*...* : 47 274c273 < (47 other less frequent bipartitions not shown) --- > (49 other less frequent bipartitions not shown) 301,308c300,307 < Thylacinus 1 0.23361 0.10247 9 0.19926 0.09575 < Sarcophilu 2 0.18904 0.06712 10 0.22288 0.13092 < Dasyurus 3 0.00001 0.00143 < Echymipera 4 0.27839 0.11689 < Trichosuru 5 0.17820 0.10158 < Phalanger 6 0.27517 0.12611 < Philander 7 0.22531 0.10268 10 iterations until convergence < Bos 8 0.38503 0.14564 log L: -570.33 --- > Thylacinus 1 0.23363 0.10248 9 0.19927 0.09576 > Sarcophilu 2 0.18905 0.06712 10 0.22291 0.13093 > Dasyurus 3 0.00001 0.00200 > Echymipera 4 0.27841 0.11691 > Trichosuru 5 0.17822 0.10160 > Phalanger 6 0.27519 0.12613 > Philander 7 0.22533 0.10269 10 iterations until convergence > Bos 8 0.38507 0.14566 log L: -570.33 316,318c315,317 < (Thylacinus:0.23361,(Sarcophilu:0.18904,Dasyurus:0.00001)92:0.19926, < (Trichosuru:0.17820,Phalanger:0.27517)86:0.22288,Echymipera:0.27839, < Philander:0.22531,Bos:0.38503); --- > (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)90:0.19927, > (Trichosuru:0.17822,Phalanger:0.27519)87:0.22291,Echymipera:0.27841, > Philander:0.22533,Bos:0.38507); 352,359c351,358 < Thylacinus 1 0.29774 0.785 9 0.20354 0.979 < Sarcophilu 2 0.09419 2.007 10 0.22844 0.976 < Dasyurus 3 0.09419 0.000 < Echymipera 4 0.29774 0.935 < Trichosuru 5 0.23469 0.759 < Phalanger 6 0.23469 1.172 < Philander 7 0.29774 0.757 16 iterations until convergence < Bos 8 0.29774 1.293 log L: -573.89 --- > Thylacinus 1 0.29776 0.785 9 0.20356 0.979 > Sarcophilu 2 0.09420 2.007 10 0.22846 0.976 > Dasyurus 3 0.09420 0.000 > Echymipera 4 0.29776 0.935 > Trichosuru 5 0.23472 0.759 > Phalanger 6 0.23472 1.172 > Philander 7 0.29776 0.757 16 iterations until convergence > Bos 8 0.29776 1.293 log L: -573.89 362,365c361,364 < 0.23469 0.07630 10 5 6 < 0.09419 0.03153 9 2 3 < 0.29774 0.05401 10 4 7 8 1 9 < 0.38044 0.07030 of root at branch 10 --- > 0.23472 0.07631 10 5 6 > 0.09420 0.03153 9 2 3 > 0.29776 0.05401 10 4 7 8 1 9 > 0.38047 0.07031 of root at branch 10 371,373c370,372 < ((Trichosuru:0.23469,Phalanger:0.23469)86:0.14574,(Echymipera:0.29774, < Philander:0.29774,Bos:0.29774,Thylacinus:0.29774,(Sarcophilu:0.09419, < Dasyurus:0.09419)92:0.20354):0.08270); --- > ((Trichosuru:0.23472,Phalanger:0.23472)87:0.14575,(Echymipera:0.29776, > Philander:0.29776,Bos:0.29776,Thylacinus:0.29776,(Sarcophilu:0.09420, > Dasyurus:0.09420)90:0.20356):0.08271); FAIL qp-hky-rhet-clock-nucl.test (exit status: 1) FAIL: qp-pure-prot ================== Testing: protein data, default model, quartet puzzling (qp-pure-prot) 177,185c177,185 < :---GLB5_PETMA < :-56: < :100: :---LGB2_LUPLU < : : < :100: :-------MYG_PHYCA < : : < : : :---HBA_HUMAN < : :----100: < : :---HBA_HORSE --- > :---HBA_HUMAN > :----100: > : :---HBA_HORSE > :100: > : : :---GLB5_PETMA > : : :-54: > : :100: :---LGB2_LUPLU > : : > : :-------MYG_PHYCA 194,195c194,195 < (HBB_HUMAN,(((GLB5_PETMA,LGB2_LUPLU)56,MYG_PHYCA)100,(HBA_HUMAN, < HBA_HORSE)100)100,HBB_HORSE); --- > (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,((GLB5_PETMA,LGB2_LUPLU)54, > MYG_PHYCA)100)100,HBB_HORSE); 205,206d204 < ****... : 1000 < **..*** : 1000 208c206,208 < *****.. : 563 --- > **..*** : 1000 > ****... : 1000 > *****.. : 544 219,220c219,220 < ****..* : 221 < ****.*. : 216 --- > ****.*. : 234 > ****..* : 222 229,233c229,231 < :------6 GLB5_PETMA < :---8 < : :----------------7 LGB2_LUPLU < :-----9 < : :-------------5 MYG_PHYCA --- > :-3 HBA_HUMAN > :----8 > : :-4 HBA_HORSE 235,237c233,237 < : : :-3 HBA_HUMAN < : :---10 < : :-4 HBA_HORSE --- > : : :------6 GLB5_PETMA > : : :---9 > : : : :----------------7 LGB2_LUPLU > : :----10 > : :-------------5 MYG_PHYCA 245,251c245,251 < HBB_HUMAN 1 0.04915 0.03158 8 0.18155 0.13086 < HBB_HORSE 2 0.12604 0.03871 9 0.34694 0.12 < HBA_HUMAN 3 0.02555 0.02185 10 0.28345 0.08777 < HBA_HORSE 4 0.09 0.03153 11 0.60239 0.11261 < MYG_PHYCA 5 1.33162 0.21116 < GLB5_PETMA 6 0.57465 0.13843 10 iterations until convergence < LGB2_LUPLU 7 1.71330 0.27644 log L: -1699.00 --- > HBB_HUMAN 1 0.04915 0.03158 8 0.28345 0.08777 > HBB_HORSE 2 0.12603 0.03871 9 0.18154 0.13086 > HBA_HUMAN 3 0.02555 0.02185 10 0.34694 0.12552 > HBA_HORSE 4 0.09542 0.03153 11 0.60239 0.11261 > MYG_PHYCA 5 1.33166 0.21117 > GLB5_PETMA 6 0.57466 0.13843 10 iterations until convergence > LGB2_LUPLU 7 1.71333 0.27645 log L: -1699.00 257,259c257,259 < (HBB_HUMAN:0.04915,(((GLB5_PETMA:0.57465,LGB2_LUPLU:1.71330)56:0.18155, < MYG_PHYCA:1.33162)100:0.34694,(HBA_HUMAN:0.02555,HBA_HORSE:0.09) < 100:0.28345)100:0.60239,HBB_HORSE:0.12604); --- > (HBB_HUMAN:0.04915,((HBA_HUMAN:0.02555,HBA_HORSE:0.09542)100:0.28345, > ((GLB5_PETMA:0.57466,LGB2_LUPLU:1.71333)54:0.18154,MYG_PHYCA:1.33166) > 100:0.34694)100:0.60239,HBB_HORSE:0.12603); FAIL qp-pure-prot.test (exit status: 1) FAIL: qp-mtrev-prot =================== Testing: protein data, mtREV, quartet puzzling (qp-mtrev-prot) 107c107 < HBA_HORSE 1.16856 1.20524 0.13144 0.00000 2.44163 1.55 3.05140 --- > HBA_HORSE 1.16856 1.20524 0.13144 0.00000 2.44163 1.55582 3.05140 109c109 < GLB5_PETMA 2.15305 2.18071 1.43785 1.55 2.62256 0.00000 2.97722 --- > GLB5_PETMA 2.15305 2.18071 1.43785 1.55582 2.62256 0.00000 2.97722 183c183 < : :-96:---GLB5_PETMA --- > : :-97:---GLB5_PETMA 194c194 < (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,(MYG_PHYCA,GLB5_PETMA,LGB2_LUPLU)96)100, --- > (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,(MYG_PHYCA,GLB5_PETMA,LGB2_LUPLU)97)100, 205d204 < **..*** : 1000 207c206,207 < ****... : 959 --- > **..*** : 1000 > ****... : 971 213c213 < *****.. : 444 --- > ****.*. : 462 218,221c218,222 < ****.*. : 442 < ****..* : 113 < **..*.. : 24 < **..*.* : 18 --- > *****.. : 436 > ****..* : 100 > **..*.* : 15 > **..*.. : 14 > **....* : 2 259c260 < (MYG_PHYCA:1.58550,GLB5_PETMA:0.88663,LGB2_LUPLU:2.13259)96:0.34149) --- > (MYG_PHYCA:1.58550,GLB5_PETMA:0.88663,LGB2_LUPLU:2.13259)97:0.34149) FAIL qp-mtrev-prot.test (exit status: 1) FAIL: qp-vt-prot ================ Testing: protein data, VT, quartet puzzling (qp-vt-prot) 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < ****..* : 365 --- > *****.. : 347 218,219c218,219 < *****.. : 324 < ****.*. : 311 --- > ****..* : 331 > ****.*. : 322 246c246 < HBA_HUMAN 3 0.03150 0.02213 10 0.96 0.10035 --- > HBA_HUMAN 3 0.03150 0.02213 10 0.54296 0.10035 257c257 < 100:0.42025,(HBA_HUMAN:0.03150,HBA_HORSE:0.08803)100:0.25241)100:0.96, --- > 100:0.42025,(HBA_HUMAN:0.03150,HBA_HORSE:0.08803)100:0.25241)100:0.54296, FAIL qp-vt-prot.test (exit status: 1) FAIL: qp-wag-prot ================= Testing: protein data, WAG, quartet puzzling (qp-wag-prot) 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < ****..* : 365 --- > *****.. : 347 218,219c218,219 < *****.. : 324 < ****.*. : 311 --- > ****..* : 331 > ****.*. : 322 244,246c244,246 < HBB_HUMAN 1 0.08 0.03102 8 0.44299 0.11946 < HBB_HORSE 2 0.11946 0.03741 9 0.25788 0.08204 < HBA_HUMAN 3 0.02934 0.02190 10 0.57110 0.10504 --- > HBB_HUMAN 1 0.05028 0.03102 8 0.44299 0.11946 > HBB_HORSE 2 0.11946 0.03740 9 0.25788 0.08204 > HBA_HUMAN 3 0.02934 0.02189 10 0.57110 0.10504 256c256 < (HBB_HUMAN:0.08,((MYG_PHYCA:1.11230,GLB5_PETMA:0.59340,LGB2_LUPLU:1.46501) --- > (HBB_HUMAN:0.05028,((MYG_PHYCA:1.11230,GLB5_PETMA:0.59340,LGB2_LUPLU:1.46501) FAIL qp-wag-prot.test (exit status: 1) FAIL: qp-clock ============== Testing: default data, default model, clock, quartet puzzling (qp-clock) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); 346,348c346,348 < (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)96:0.04504 < ,((Sarcophilu:0.06189,Dasyurus:0.06189)99:0.06663,(Philander:0.09549, < Bos:0.09549)66:0.03304,Echymipera:0.12852)70:0.01851):0.00001); --- > (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)97:0.04504 > ,((Sarcophilu:0.06189,Dasyurus:0.06189)98:0.06663,(Philander:0.09549, > Bos:0.09549)65:0.03304,Echymipera:0.12852)71:0.01851):0.00001); FAIL qp-clock.test (exit status: 1) FAIL: qp-jtt-prot ================= Testing: protein data, JTT, quartet puzzling (qp-jtt-prot) 106,107c106,107 < HBA_HUMAN 0.93732 0.97297 0.00000 0.12200 1.93956 1.26 2.51688 < HBA_HORSE 0.96340 0.97742 0.12200 0.00000 1.99570 1.34817 2.47 --- > HBA_HUMAN 0.93732 0.97297 0.00000 0.12200 1.93956 1.25126 2.51688 > HBA_HORSE 0.96340 0.97742 0.12200 0.00000 1.99570 1.34817 2.47562 109,110c109,110 < GLB5_PETMA 1.74159 1.75271 1.26 1.34817 2.04426 0.00000 2.23399 < LGB2_LUPLU 2.60857 2.65715 2.51688 2.47 2.69086 2.23399 0.00000 --- > GLB5_PETMA 1.74159 1.75271 1.25126 1.34817 2.04426 0.00000 2.23399 > LGB2_LUPLU 2.60857 2.65715 2.51688 2.47562 2.69086 2.23399 0.00000 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < *****.. : 396 --- > *****.. : 393 218,219c218,219 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 245,246c245,246 < HBB_HORSE 2 0.12734 0.03889 9 0.25371 0.08 < HBA_HUMAN 3 0.02556 0.02190 10 0.61836 0.11268 --- > HBB_HORSE 2 0.12734 0.03889 9 0.25371 0.08572 > HBA_HUMAN 3 0.02556 0.02189 10 0.61836 0.11268 FAIL qp-jtt-prot.test (exit status: 1) FAIL: qp-jtt-rhet-prot ====================== Testing: protein data, JTT, rate heterogeneity, quartet puzzling (qp-jtt-rhet-prot) 232d231 < **..*** : 1000 233a233 > **..*** : 1000 239c239 < *****.. : 396 --- > *****.. : 393 244,245c244,245 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 270c270 < HBB_HUMAN 1 0.04933 0.03410 8 0.50700 0.17282 --- > HBB_HUMAN 1 0.04933 0.03409 8 0.50700 0.17281 FAIL qp-jtt-rhet-prot.test (exit status: 1) FAIL: qp-jtt-rhet-clock-prot ============================ Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling (qp-jtt-rhet-clock-prot) 232d231 < **..*** : 1000 233a233 > **..*** : 1000 239c239 < *****.. : 396 --- > *****.. : 393 244,245c244,245 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 270c270 < HBB_HUMAN 1 0.04933 0.03410 8 0.50700 0.17282 --- > HBB_HUMAN 1 0.04933 0.03409 8 0.50700 0.17281 316c316 < HBB_HUMAN 1 0.08775 0. 8 0.58020 0.874 --- > HBB_HUMAN 1 0.08775 0.562 8 0.58020 0.874 FAIL qp-jtt-rhet-clock-prot.test (exit status: 1) FAIL: lm-pure-prot ================== Testing: protein data, default model, likelihood mapping (lm-pure-prot) 148c148 < Number of quartets in region 1: 17 (= 48.6%) --- > Number of quartets in region 1: 14 (= 40.0%) 150c150 < Number of quartets in region 3: 7 (= 20.0%) --- > Number of quartets in region 3: 10 (= 28.6%) 165,167c165,167 < Number of quartets in region 1: 16 (= 45.7%) left: 7 right: 9 < Number of quartets in region 2: 9 (= 25.7%) bottom: 3 top: 6 < Number of quartets in region 3: 7 (= 20.0%) bottom: 2 top: 5 --- > Number of quartets in region 1: 12 (= 34.3%) left: 3 right: 9 > Number of quartets in region 2: 11 (= 31.4%) bottom: 3 top: 8 > Number of quartets in region 3: 9 (= 25.7%) bottom: 4 top: 5 FAIL lm-pure-prot.test (exit status: 1) FAIL: ut-pure-prot ================== Testing: protein data, default model, user tree evaluation (ut-pure-prot) 151c151 < HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00192 --- > HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00141 191,193c191,193 < HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08777 < HBB_HORSE 2 0.12604 0.03871 9 0.18149 0.13086 < HBA_HUMAN 3 0.02555 0.02185 10 0.34695 0.12 --- > HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08778 > HBB_HORSE 2 0.12604 0.03871 9 0.18149 0.13088 > HBA_HUMAN 3 0.02555 0.02185 10 0.34695 0.12552 196c196 < GLB5_PETMA 6 0.57473 0.13844 9 iterations until convergence --- > GLB5_PETMA 6 0.57473 0.13845 9 iterations until convergence 289,292c289,292 < 1 -1699.50 0.49 1.0266 0.3220 + 0.4870 + 0.1918 + + < 2 -1699.00 0.00 <---- best 1.0000 + 1.0000 + 0.3601 + best < 3 -1699.32 0.32 1.3440 0.3930 + 0.4610 + 0.2563 + + < 4 -1699.50 0.49 1.0267 0.2960 + 0.4870 + 0.1918 + + --- > 1 -1699.50 0.49 1.0266 0.3020 + 0.4700 + 0.1881 + + > 2 -1699.00 0.00 <---- best 1.0000 + 1.0000 + 0.3650 + best > 3 -1699.32 0.32 1.3440 0.4030 + 0.4690 + 0.2588 + + > 4 -1699.50 0.49 1.0267 0.3070 + 0.4700 + 0.1881 + + FAIL ut-pure-prot.test (exit status: 1) FAIL: cons-pure-prot ==================== Testing: protein data, default model, consensus construction (cons-pure-prot) 203c203 < HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08745 --- > HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08746 FAIL cons-pure-prot.test (exit status: 1) SKIP: build-remark ================== *** *** !!! Important remark !!! *** *** Please note that only the output file *.puzzle is checked *** for identity. The overall precision reached in the program *** is heavily dependent on the compiler as well as the optimization *** level (-O) used to compile the executable. *** Hence, even if tests are marked as failed this might just be *** due to differences in less significant digits caused by rounding *** errors from less acurate computations for the sake of faster *** running times. (If you want to be sure about this please refer *** to your compiler's manual!) *** *** Please check the output file differences which are printed during the tests. *** The template files which the results are checked against have been *** generated with TREE-PUZZLE 5.2 compiled with GCC version 3.3-20030226 *** and default compiler flags '-g -O2' and using the SPRNG random number *** generator. *** SKIP build-remark (exit status: 77) ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 19 # PASS: 0 # SKIP: 2 # XFAIL: 0 # FAIL: 17 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log ============================================================================ Makefile:563: recipe for target 'test-suite.log' failed make[5]: *** [test-suite.log] Error 1 make[5]: Leaving directory '/<>/tests' Makefile:669: recipe for target 'check-TESTS' failed make[4]: *** [check-TESTS] Error 2 make[4]: Leaving directory '/<>/tests' Makefile:749: recipe for target 'check-am' failed make[3]: *** [check-am] Error 2 make[3]: Leaving directory '/<>/tests' Makefile:380: recipe for target 'check-recursive' failed make[2]: *** [check-recursive] Error 1 make[2]: Leaving directory '/<>' dh_auto_test: make -j1 check VERBOSE=1 returned exit code 2 make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --no-parallel dh_testroot -a -O--no-parallel dh_prep -a -O--no-parallel dh_installdirs -a -O--no-parallel dh_auto_install -a -O--no-parallel make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c puzzle ppuzzle '/<>/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/doc' make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' Making install in data make[2]: Entering directory '/<>/data' make[3]: Entering directory '/<>/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/data' make[2]: Leaving directory '/<>/data' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a # The binary has to be renamed because of the generic name mv `pwd`/debian/tmp/usr/bin/puzzle `pwd`/debian/tree-puzzle/usr/bin/tree-puzzle mv `pwd`/debian/tmp/usr/bin/ppuzzle `pwd`/debian/tree-ppuzzle/usr/bin/tree-ppuzzle make[1]: Leaving directory '/<>' dh_installdocs -a -O--no-parallel dh_installchangelogs -a -O--no-parallel dh_installexamples -a -O--no-parallel dh_installman -a -O--no-parallel dh_installmenu -a -O--no-parallel dh_perl -a -O--no-parallel dh_link -a -O--no-parallel dh_strip_nondeterminism -a -O--no-parallel debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf --exclude .phy --exclude trees --exclude .b make[1]: Leaving directory '/<>' dh_fixperms -a -O--no-parallel dh_missing -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -a -O--no-parallel dh_gencontrol -a -O--no-parallel dh_md5sums -a -O--no-parallel dh_builddeb -a -O--no-parallel INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing tree-puzzle (in debian/tree-puzzle); do_strip: , oemstrip: pkgstriptranslations: processing tree-puzzle-dbgsym (in debian/.debhelper/tree-puzzle/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing tree-ppuzzle (in debian/tree-ppuzzle); do_strip: , oemstrip: INFO: pkgstriptranslations version 138 pkgstriptranslations: processing tree-ppuzzle-dbgsym (in debian/.debhelper/tree-ppuzzle/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/tree-ppuzzle/DEBIAN/control, package tree-ppuzzle, directory debian/tree-ppuzzle INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... pkgstripfiles: processing control file: debian/.debhelper/tree-ppuzzle/dbgsym-root/DEBIAN/control, package tree-ppuzzle-dbgsym, directory debian/.debhelper/tree-ppuzzle/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-ppuzzle-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-ppuzzle-dbgsym' in 'debian/.debhelper/scratch-space/build-tree-ppuzzle/tree-ppuzzle-dbgsym_5.2-10build1_s390x.deb'. Renaming tree-ppuzzle-dbgsym_5.2-10build1_s390x.deb to tree-ppuzzle-dbgsym_5.2-10build1_s390x.ddeb INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/tree-puzzle/dbgsym-root/DEBIAN/control, package tree-puzzle-dbgsym, directory debian/.debhelper/tree-puzzle/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-puzzle-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-puzzle-dbgsym' in 'debian/.debhelper/scratch-space/build-tree-puzzle/tree-puzzle-dbgsym_5.2-10build1_s390x.deb'. INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... Renaming tree-puzzle-dbgsym_5.2-10build1_s390x.deb to tree-puzzle-dbgsym_5.2-10build1_s390x.ddeb INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/tree-puzzle/DEBIAN/control, package tree-puzzle, directory debian/tree-puzzle pkgstripfiles: Truncating usr/share/doc/tree-puzzle/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-puzzle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-puzzle' in '../tree-puzzle_5.2-10build1_s390x.deb'. pkgstripfiles: Truncating usr/share/doc/tree-ppuzzle/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-ppuzzle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-ppuzzle' in '../tree-ppuzzle_5.2-10build1_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../tree-puzzle_5.2-10build1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build tree-puzzle-5.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180513-1510 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tree-puzzle_5.2-10build1_s390x.changes: --------------------------------------- Format: 1.8 Date: Sun, 13 May 2018 15:06:08 +0000 Source: tree-puzzle Binary: tree-puzzle tree-ppuzzle tree-puzzle-doc Architecture: s390x Version: 5.2-10build1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: tree-ppuzzle - Parallelized reconstruction of phylogenetic trees by maximum like tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood tree-puzzle-doc - Reconstruction of phylogenetic trees by maximum likelihood (doc) Changes: tree-puzzle (5.2-10build1) cosmic; urgency=medium . * No-change rebuild for dune openmpi soname change. Checksums-Sha1: 6f43af2ae2c2f135613adbc85288419cc6d55ead 261360 tree-ppuzzle-dbgsym_5.2-10build1_s390x.ddeb 4a60cfbaf8dddd7369254cba519bac2f7411877d 133404 tree-ppuzzle_5.2-10build1_s390x.deb 4820c99be1ac5320e43898ecf5438477fa9cc374 214696 tree-puzzle-dbgsym_5.2-10build1_s390x.ddeb cb4f7eac4fa5e8717f67e0dabc17cf883505735f 6783 tree-puzzle_5.2-10build1_s390x.buildinfo eb0b3605359ed85a1485d8bec10e5faff1be9399 117300 tree-puzzle_5.2-10build1_s390x.deb Checksums-Sha256: 7345ee945f78a717eed730d24763f997c0a65f9a6e3975c0483f2f9128ddf9a3 261360 tree-ppuzzle-dbgsym_5.2-10build1_s390x.ddeb 7208fb7008886aef06d241d65d1dcd6a882490fc47c574cd8d4317dab3f23338 133404 tree-ppuzzle_5.2-10build1_s390x.deb 38193582f04316557e12523dfc212c71c00a5ecc102af1d9eaf242db88fb2729 214696 tree-puzzle-dbgsym_5.2-10build1_s390x.ddeb 12a74b1780d745bc690ac0eb917bc389949c382d9270467ab1fb089dbb2a1609 6783 tree-puzzle_5.2-10build1_s390x.buildinfo ecf966a00fba3edfbb3231351ca908dca4dc6c15ec81f5d45db8ea812c0d73f5 117300 tree-puzzle_5.2-10build1_s390x.deb Files: e6ef35b642769d1d192370052d6d9091 261360 debug optional tree-ppuzzle-dbgsym_5.2-10build1_s390x.ddeb aff99b78f05fefeae16313f479c51fdf 133404 science optional tree-ppuzzle_5.2-10build1_s390x.deb 854471fb26f240c8e58c1a0e79e81ca7 214696 debug optional tree-puzzle-dbgsym_5.2-10build1_s390x.ddeb 9fcdd51c77311fda61300d6b2199199f 6783 science optional tree-puzzle_5.2-10build1_s390x.buildinfo 20804393061445e92df1549e733c95f0 117300 science optional tree-puzzle_5.2-10build1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tree-ppuzzle_5.2-10build1_s390x.deb ----------------------------------- new debian package, version 2.0. size 133404 bytes: control archive=1452 bytes. 1266 bytes, 26 lines control 621 bytes, 9 lines md5sums 199 bytes, 7 lines * postinst #!/bin/sh 174 bytes, 5 lines * postrm #!/bin/sh Package: tree-ppuzzle Source: tree-puzzle Version: 5.2-10build1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 369 Depends: libc6 (>= 2.7), libopenmpi3, libsprng2, openmpi-bin Recommends: tree-puzzle-doc Suggests: phylip, treetool Section: science Priority: optional Homepage: http://www.tree-puzzle.de Description: Parallelized reconstruction of phylogenetic trees by maximum likelihood TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. . This is the parallelized version of tree-puzzle. drwxr-xr-x root/root 0 2018-05-13 15:06 ./ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/bin/ -rwxr-xr-x root/root 350184 2018-05-13 15:06 ./usr/bin/tree-ppuzzle drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/doc/tree-ppuzzle/ -rw-r--r-- root/root 1063 2002-08-05 00:45 ./usr/share/doc/tree-ppuzzle/AUTHORS -rw-r--r-- root/root 1558 2004-07-01 02:39 ./usr/share/doc/tree-ppuzzle/README -rw-r--r-- root/root 411 2017-10-13 05:48 ./usr/share/doc/tree-ppuzzle/README.Debian -rw-r--r-- root/root 1664 2018-05-13 15:06 ./usr/share/doc/tree-ppuzzle/changelog.Debian.gz -rw-r--r-- root/root 1289 2017-10-13 05:48 ./usr/share/doc/tree-ppuzzle/copyright drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/man/man1/ -rw-r--r-- root/root 804 2018-05-13 15:06 ./usr/share/man/man1/tree-ppuzzle.1.gz drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/menu/ -rw-r--r-- root/root 276 2017-10-13 05:48 ./usr/share/menu/tree-ppuzzle drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/pixmaps/ -rw-r--r-- root/root 1292 2017-10-13 05:48 ./usr/share/pixmaps/tree-ppuzzle.xpm tree-puzzle_5.2-10build1_s390x.deb ---------------------------------- new debian package, version 2.0. size 117300 bytes: control archive=1400 bytes. 1153 bytes, 23 lines control 612 bytes, 9 lines md5sums 199 bytes, 7 lines * postinst #!/bin/sh 174 bytes, 5 lines * postrm #!/bin/sh Package: tree-puzzle Version: 5.2-10build1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 325 Depends: libc6 (>= 2.7), libsprng2 Recommends: tree-puzzle-doc Suggests: phylip, treetool Section: science Priority: optional Homepage: http://www.tree-puzzle.de Description: Reconstruction of phylogenetic trees by maximum likelihood TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. drwxr-xr-x root/root 0 2018-05-13 15:06 ./ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/bin/ -rwxr-xr-x root/root 305080 2018-05-13 15:06 ./usr/bin/tree-puzzle drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/doc/tree-puzzle/ -rw-r--r-- root/root 1063 2002-08-05 00:45 ./usr/share/doc/tree-puzzle/AUTHORS -rw-r--r-- root/root 1558 2004-07-01 02:39 ./usr/share/doc/tree-puzzle/README -rw-r--r-- root/root 411 2017-10-13 05:48 ./usr/share/doc/tree-puzzle/README.Debian -rw-r--r-- root/root 1664 2018-05-13 15:06 ./usr/share/doc/tree-puzzle/changelog.Debian.gz -rw-r--r-- root/root 1289 2017-10-13 05:48 ./usr/share/doc/tree-puzzle/copyright drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/man/man1/ -rw-r--r-- root/root 798 2018-05-13 15:06 ./usr/share/man/man1/tree-puzzle.1.gz drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/menu/ -rw-r--r-- root/root 245 2017-10-13 05:48 ./usr/share/menu/tree-puzzle drwxr-xr-x root/root 0 2018-05-13 15:06 ./usr/share/pixmaps/ -rw-r--r-- root/root 1286 2017-10-13 05:48 ./usr/share/pixmaps/tree-puzzle.xpm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 14432 Build-Time: 41 Distribution: cosmic-proposed Host Architecture: s390x Install-Time: 8 Job: tree-puzzle_5.2-10build1.dsc Machine Architecture: s390x Package: tree-puzzle Package-Time: 50 Source-Version: 5.2-10build1 Space: 14432 Status: successful Version: 5.2-10build1 -------------------------------------------------------------------------------- Finished at 20180513-1510 Build needed 00:00:50, 14432k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14874525 Scanning for processes to kill in build PACKAGEBUILD-14874525 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14874525 Stopping target for build PACKAGEBUILD-14874525 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14874525 Removing build PACKAGEBUILD-14874525